genome.fa.s375.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1483
Parameters: 2 7 7 80 10 50 1000
Length:  60337

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4094--4271	27	6.6	27	79	3	115	28	28	16	26	1.97
4094--4271	54	3.3	55	80	10	204	28	28	16	26	1.97
4115--4270	82	1.9	81	85	3	215	28	28	16	26	1.97
7330--7403	29	2.6	29	89	4	105	25	17	31	25	1.97
7718--7955	40	5.9	40	83	4	214	23	23	28	24	1.99
7718--7953	80	3.0	80	82	2	269	23	23	28	25	2.00
11143--11829	47	14.4	47	89	4	950	32	9	28	29	1.88
11143--11768	145	4.3	143	90	5	976	32	8	28	29	1.87
11947--12025	37	2.1	37	90	0	122	24	18	31	25	1.98
20927--20987	30	2.0	30	96	0	113	22	21	22	32	1.98
22473--22597	42	3.0	42	88	3	180	30	10	24	35	1.89
22519--22628	43	2.6	42	78	5	114	30	13	24	30	1.94
22473--22628	85	1.8	84	83	4	206	30	12	23	33	1.91
24940--24985	19	2.4	19	96	0	83	23	34	28	13	1.92
25209--25415	81	2.6	81	91	1	326	24	14	18	42	1.87
25209--25423	27	8.0	27	88	1	279	24	13	19	42	1.87
31383--31446	33	2.0	32	84	3	83	20	23	20	35	1.96
31408--31467	27	2.3	26	85	2	75	21	23	20	35	1.96
35473--35568	42	2.3	42	87	3	140	35	12	19	32	1.89
54189--54267	37	2.1	37	90	0	122	25	31	18	24	1.98
54386--54722	47	7.1	47	91	2	521	27	30	9	32	1.88
54388--54722	143	2.4	143	92	1	548	28	30	9	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54386--54719	96	3.5	94	91	2	524	27	30	9	32	1.89

Tables:   1

The End!