Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2731
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 54349
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:455 original size:36 final size:35
Alignment explanation
Indices: 409--502 Score: 111
Period size: 36 Copynumber: 2.7 Consensus size: 35
399 AGCCCGGTTA
409 TAGTAACTCGCAAAATG-CTTCGAACTTAACCGGATT
1 TAGTAACTCGCAAAATGCCTTCGAACTTAACC-GA-T
* ** *
445 TAGTAACTCGCACAATGCCTTCGGGCTTAGCCGAT
1 TAGTAACTCGCAAAATGCCTTCGAACTTAACCGAT
480 TAGT-ACTCGCACAAATGCCTTCG
1 TAGTAACTCGCA-AAATGCCTTCG
503 GATCTTAGTC
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
34 7 0.14
35 15 0.29
36 18 0.35
37 11 0.22
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (35 bp):
TAGTAACTCGCAAAATGCCTTCGAACTTAACCGAT
Found at i:4566 original size:40 final size:40
Alignment explanation
Indices: 4479--4682 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
4469 CAGAATTTAA
** * *
4479 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGA-CATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGATCTTAGT
* *
4519 CCTGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
* *
4559 CCGGTTATAGTAACTCGCACAAATGCCCTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
* *
4599 CTGGATAT-GTAACTCGCAAAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
* * * *
4638 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGT
4678 CCGGA
1 CCGGA
4683 CATCATTCAA
Statistics
Matches: 142, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 40 0.28
40 92 0.65
41 10 0.07
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
Found at i:12787 original size:39 final size:40
Alignment explanation
Indices: 12644--12834 Score: 237
Period size: 40 Copynumber: 4.8 Consensus size: 40
12634 CGGAATTTAA
** * *
12644 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGA-CATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGATCTTAGT
*
12684 CCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
* *
12724 CCGGTTATAGTAACTCGCACAAATGCCTTTGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
12764 CCGGATAT-GTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
* * *
12803 CCGGATATGGTCACTTAGCACAAA-GCCTTCGG
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGG
12835 GAATAAGCCC
Statistics
Matches: 137, Mismatches: 10, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
39 42 0.31
40 87 0.64
41 8 0.06
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
Found at i:12847 original size:79 final size:80
Alignment explanation
Indices: 12663--12847 Score: 243
Period size: 79 Copynumber: 2.3 Consensus size: 80
12653 GCTACTCGTT
*
12663 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* *
12728 TTATAGTAACTCGCA
66 ATATAGTAACTAGCA
* * *
12743 CAAATGCCTT-TGGATCTTAGTCCGGATAT-GTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
* *
12806 GATATGGTCACTTAGCA
65 GATATAGTAAC-TAGCA
12823 CAAA-GCCTTCGGGA-ATAAGCCCGGA
1 CAAATGCCTTCGGGACAT-AGCCCGGA
12848 CATTATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATATAGTAACTAGCA
Found at i:13428 original size:22 final size:21
Alignment explanation
Indices: 13410--13469 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 21
13400 ATAAATGACA
*
13410 TACATTTTACTAACTAATGCAT
1 TACATATTA-TAACTAATGCAT
13432 TACATATTATAACTCAATATGCAT
1 TACATATTATAACT--A-ATGCAT
13456 TACATATTATAACT
1 TACATATTATAACT
13470 CAATATGCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
21 5 0.15
22 8 0.24
23 1 0.03
24 20 0.59
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (21 bp):
TACATATTATAACTAATGCAT
Found at i:13454 original size:24 final size:24
Alignment explanation
Indices: 13426--13479 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
13416 TTACTAACTA
13426 ATGCATTACATATTATAACTCAAT
1 ATGCATTACATATTATAACTCAAT
13450 ATGCATTACATATTATAACTCAAT
1 ATGCATTACATATTATAACTCAAT
13474 ATGCAT
1 ATGCAT
13480 CCATCATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.41, C:0.17, G:0.06, T:0.37
Consensus pattern (24 bp):
ATGCATTACATATTATAACTCAAT
Found at i:18683 original size:18 final size:18
Alignment explanation
Indices: 18662--18698 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
18652 CGTCCGTATA
*
18662 GGCCTACACACTCGTGTG
1 GGCCTACACACTCATGTG
18680 GGCCTACACACTCATGTG
1 GGCCTACACACTCATGTG
18698 G
1 G
18699 CTCACACGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.22
Consensus pattern (18 bp):
GGCCTACACACTCATGTG
Found at i:33774 original size:31 final size:31
Alignment explanation
Indices: 33732--33810 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
33722 TTTAACGGTT
*
33732 ACTGGGACGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
33763 ACTGGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
33794 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
33811 ACTATAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:33906 original size:42 final size:42
Alignment explanation
Indices: 33834--33925 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
33824 TGGCCCATAG
* ** *
33834 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
33876 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
33918 GCCCATTT
1 GCCCATTT
33926 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:34099 original size:25 final size:26
Alignment explanation
Indices: 34058--34167 Score: 147
Period size: 26 Copynumber: 4.3 Consensus size: 26
34048 CTGGAGGCCT
*
34058 AGCCTCTTTT-AAT-AACTGGGGTA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
34082 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
34107 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
34133 AGCCCTTTTCAATAAACTGAGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
34159 AGCCCTTTT
1 AGCCCTTTT
34168 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
23 5 0.06
24 5 0.06
25 32 0.42
26 35 0.45
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:34139 original size:51 final size:49
Alignment explanation
Indices: 34058--34167 Score: 141
Period size: 51 Copynumber: 2.2 Consensus size: 49
34048 CTGGAGGCCT
* ** *
34058 AGCCTCTTTTAATAACTGGGGTAAAGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTGAGGCATA
34107 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGAGGCATA
1 AGCCCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCAATAAACTGAGGCATA
34159 AGCCCTTTT
1 AGCCCTTTT
34168 GCACTTCCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
48 5 0.09
49 7 0.13
50 9 0.17
51 22 0.42
52 10 0.19
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (49 bp):
AGCCCTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTGAGGCATA
Found at i:35032 original size:27 final size:27
Alignment explanation
Indices: 34970--35033 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
34960 GGGCATATTC
34970 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
34997 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
35024 GTCTTTTTAC
1 GTCATTTTAC
35034 TTAATAGGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:35118 original size:27 final size:27
Alignment explanation
Indices: 35065--35358 Score: 214
Period size: 27 Copynumber: 10.8 Consensus size: 27
35055 TTTCATCCTA
* * * *
35065 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
35092 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
35119 CAATGGTATTTCTATAATTTTTAAAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
* * * *
35148 CAAGGGTATTTCTGTAACTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
35175 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
** * *
35202 TGAGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* *
35229 C-AGTGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * * *
35256 TAGGGGTATTTTGGTAATTTTACAAGTC
1 CAAGGGTATTTCGGTAATTTTACAA-AC
* *
35284 CAA-GGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * * *
35310 CGAGGGTATTTCAGTATTTTTACAAAA
1 CAAGGGTATTTCGGTAATTTTACAAAC
*
35337 TAAGGGTATTTCGGTAATTTTA
1 CAAGGGTATTTCGGTAATTTTA
35359 GTAAACTAAA
Statistics
Matches: 214, Mismatches: 47, Indels: 12
0.78 0.17 0.04
Matches are distributed among these distances:
26 4 0.02
27 179 0.84
28 16 0.07
29 15 0.07
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:36609 original size:46 final size:46
Alignment explanation
Indices: 36559--36730 Score: 208
Period size: 45 Copynumber: 3.7 Consensus size: 46
36549 TGGTTGAGCA
*
36559 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
36605 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
36652 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
36698 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
36731 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 34 0.32
46 30 0.28
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:36991 original size:19 final size:20
Alignment explanation
Indices: 36954--36991 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
36944 ATAAGGTGGT
36954 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
36974 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
36992 TGGTGTACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:43703 original size:46 final size:48
Alignment explanation
Indices: 43585--43757 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 48
43575 AGGATGGTTG
*
43585 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAT
* * *
43634 -G--T-CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACT
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAT
* * *
43676 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAT
* *
43724 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
43758 TAGGGCGGGT
Statistics
Matches: 105, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
42 7 0.07
43 1 0.01
44 2 0.02
45 28 0.27
46 57 0.54
47 2 0.02
48 3 0.03
49 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (48 bp):
AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAT
Found at i:44017 original size:19 final size:20
Alignment explanation
Indices: 43980--44017 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
43970 ATAAGGTGGT
43980 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
44000 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
44018 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:46958 original size:17 final size:17
Alignment explanation
Indices: 46938--46978 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
46928 GCCGAGTTTT
46938 TGAAATGGCTTATGATA
1 TGAAATGGCTTATGATA
46955 TGAAATGGCTTATGATA
1 TGAAATGGCTTATGATA
46972 TGAAATG
1 TGAAATG
46979 AAAAGCTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.37, C:0.05, G:0.24, T:0.34
Consensus pattern (17 bp):
TGAAATGGCTTATGATA
Found at i:49308 original size:18 final size:17
Alignment explanation
Indices: 49287--49320 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
49277 TTAAACCGAG
49287 ATAGGTCGTGTGGGCCCA
1 ATAGG-CGTGTGGGCCCA
*
49305 ATAGGCTTGTGGGCCC
1 ATAGGCGTGTGGGCCC
49321 CACATGGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.15, C:0.24, G:0.38, T:0.24
Consensus pattern (17 bp):
ATAGGCGTGTGGGCCCA
Found at i:53318 original size:49 final size:49
Alignment explanation
Indices: 53208--53529 Score: 486
Period size: 49 Copynumber: 6.7 Consensus size: 49
53198 TCTGGTATTG
* *
53208 AATGGCCAATGTGATGAATTGTGAAAGTGTATATATATGTGATAAGGCCG
1 AATGGCCGATGTGATGAA-TGTGAAAGTGTATATATATGTGATAAGGCCT
*
53258 AATGG-CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
*
53306 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCG
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
53353 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
53402 AATGGCCGATGTGATGAA--TGAAAGTGTATATATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCT
*
53451 AATAGCCGATG-GATGAATGTGGAAAGTG--TA-ATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGT-GAAAGTGTATATATATGTGATAAGGCCT
53497 AATGGCCGATGTGATGAA--TGAAAGTGTATATAT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATAT
53530 GTGACAGGGC
Statistics
Matches: 254, Mismatches: 6, Indels: 27
0.89 0.02 0.09
Matches are distributed among these distances:
44 7 0.03
45 1 0.00
46 28 0.11
47 64 0.25
48 41 0.16
49 100 0.39
50 6 0.02
51 7 0.03
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
Found at i:53495 original size:144 final size:143
Alignment explanation
Indices: 53207--53529 Score: 512
Period size: 144 Copynumber: 2.3 Consensus size: 143
53197 ATCTGGTATT
*
53207 GAATGGCCAATGTGATGAATTGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCAATGTGAT
1 GAATGGCCGATGTGATGAA-TGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCAATGTGAT
*
53272 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
65 GAA-GTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
53337 ATATGTGATAAGGCC
129 ATATGTGATAAGGCC
* *
53352 GAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGG-CAATGTGAT
53417 GAA-TGAAAGTGTATATATATATGTGATAAGGCCTAATAGCCGATG-GATGAATGTGGAAAGTGT
65 GAAGTGAAAGTG--TATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT-GAAAGTGT
53480 A-ATATGTGATAAGGCC
127 ATATATGTGATAAGGCC
*
53496 TAATGGCCGATGTGATGAA--TGAAAGTGTATATAT
1 GAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
53530 GTGACAGGGC
Statistics
Matches: 169, Mismatches: 5, Indels: 11
0.91 0.03 0.06
Matches are distributed among these distances:
142 15 0.09
143 8 0.05
144 77 0.46
145 69 0.41
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
GAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCAATGTGATG
AAGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCC
Done.