genome.fa.s38.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1359
Parameters: 2 7 7 80 10 50 1000
Length:  73978

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2264--2342	40	2.0	39	97	2	149	21	20	25	32	1.97
2368--2470	40	2.6	40	92	3	165	25	20	31	23	1.98
10450--10636	40	4.7	40	95	1	313	23	20	26	29	1.99
10449--10700	40	6.3	40	90	3	312	23	20	26	28	1.99
18442--18625	40	4.6	39	82	9	203	24	22	27	25	2.00
20059--20110	26	2.0	26	96	0	95	13	23	34	28	1.92
19981--20343	101	3.6	101	94	2	597	19	20	29	30	1.97
20160--20211	26	2.0	26	96	0	95	13	23	34	28	1.92
20259--20310	27	1.9	27	96	0	95	13	25	32	28	1.93
27636--27687	26	2.0	26	96	0	95	13	23	34	28	1.92
27558--27924	103	3.6	104	94	2	618	19	20	29	30	1.97
27839--27890	27	1.9	27	96	0	95	13	25	32	28	1.93
35854--36270	47	8.8	47	95	1	708	29	28	8	32	1.87
35854--36270	192	2.2	188	93	1	708	29	28	8	32	1.87
36190--36268	25	3.3	25	64	10	74	34	27	5	32	1.79
40946--41130	40	4.7	40	82	7	209	24	22	27	25	2.00
41002--41153	79	1.9	79	84	7	202	25	20	27	26	1.99
46016--46394	48	7.9	48	78	3	352	25	28	18	27	1.98
46016--46377	96	3.8	96	80	4	426	24	28	19	27	1.98
46015--46394	144	2.7	141	78	7	408	25	28	18	27	1.98
50545--50607	23	3.0	20	88	9	83	31	0	0	68	0.90
58047--58215	39	4.3	39	90	2	241	23	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57994--58217	40	5.7	40	84	7	255	24	22	28	25	1.99
58047--58250	79	2.6	79	82	5	200	25	20	28	25	1.99
62203--62401	54	3.7	53	82	7	217	35	16	25	22	1.95
62203--62401	107	1.8	109	88	4	305	35	16	25	22	1.95
62640--62670	16	1.9	16	93	0	53	41	0	22	35	1.54
68848--68885	16	2.4	16	95	0	67	31	26	10	31	1.90
72906--73059	42	3.6	42	85	3	202	29	16	24	30	1.96

Tables:   1

The End!