Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold773
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51054
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:4178 original size:24 final size:25
Alignment explanation
Indices: 4151--4197 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
4141 ATGATTATGG
* *
4151 TGATGTGTACATG-CGATGAATGAA
1 TGATGAGTACATGAAGATGAATGAA
*
4175 TGATGAGTATATGAAGATGAATG
1 TGATGAGTACATGAAGATGAATG
4198 TCAAAGAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.04, G:0.30, T:0.30
Consensus pattern (25 bp):
TGATGAGTACATGAAGATGAATGAA
Found at i:8003 original size:25 final size:25
Alignment explanation
Indices: 7951--8004 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
7941 TAAATAGTAG
*
7951 TAGTGTTAGAAATATACTATATATA
1 TAGTGTTAGAAATATACTATATAGA
7976 TAGTGTTAGAAGTATATAC-ATA-AGA
1 TAGTGTTAGAA--ATATACTATATAGA
8001 TAGT
1 TAGT
8005 AAAAATACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 17 0.65
26 3 0.12
27 6 0.23
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.37
Consensus pattern (25 bp):
TAGTGTTAGAAATATACTATATAGA
Found at i:9232 original size:20 final size:20
Alignment explanation
Indices: 9185--9233 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
9175 AAAAACAGAA
*
9185 GAGGAGGGAGAGAAAAGAGGG
1 GAGG-GGGAAAGAAAAGAGGG
* * *
9206 AACGGGGAAAGAAGAGAGGG
1 GAGGGGGAAAGAAAAGAGGG
9226 GAGGGGGA
1 GAGGGGGA
9234 GCTCCGGCCA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.41, C:0.02, G:0.57, T:0.00
Consensus pattern (20 bp):
GAGGGGGAAAGAAAAGAGGG
Found at i:9830 original size:22 final size:22
Alignment explanation
Indices: 9773--9830 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
9763 TACGAGGACT
* * *
9773 GTGGAGGTATGGGACTGTTGTA
1 GTGGGGGTATGGGGCTGTTGAA
9795 GTGGGGGTATGGGGCTGTTGAA
1 GTGGGGGTATGGGGCTGTTGAA
9817 GTGGGGGTATGGGG
1 GTGGGGGTATGGGG
9831 TTGCTGAGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.14, C:0.03, G:0.55, T:0.28
Consensus pattern (22 bp):
GTGGGGGTATGGGGCTGTTGAA
Found at i:12836 original size:14 final size:14
Alignment explanation
Indices: 12790--12867 Score: 68
Period size: 14 Copynumber: 5.4 Consensus size: 14
12780 GTATCTTGGG
*
12790 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
*
12805 TCT-TTTATTCTGGA
1 TTTCTTTATTC-GGA
*
12819 TTTCTTTATTCGGG
1 TTTCTTTATTCGGA
* *
12833 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
12848 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
12862 TTTCTT
1 TTTCTT
12868 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
14 31 0.61
15 20 0.39
ACGTcount: A:0.10, C:0.17, G:0.14, T:0.59
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:15285 original size:46 final size:45
Alignment explanation
Indices: 15235--15410 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 45
15225 TGGTTGAGCA
*
15235 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* ** * *
15281 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATAT-AACTAG-GCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC---ACTTATGGA-T-GCGAAG
* *
15328 TCCGAGCTCAATGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
15374 CCCGAGCTAATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
15411 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 7 0.07
45 1 0.01
46 63 0.59
47 26 0.24
48 1 0.01
49 7 0.07
50 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:15391 original size:93 final size:93
Alignment explanation
Indices: 15232--15402 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
15222 GGATGGTTGA
** * * **
15232 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCAATGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTAATTGAGT
15297 TGAGTCCGAGTTCGAGAGATATAACTAG
66 TGAGTCCGAGTTCGAGAGATATAACTAG
* *
15325 GCATCCGAGCTCAATGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTAATTGAGT
1 GCATCCGAACTCAATGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTAATTGAGT
15390 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
15403 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCAATGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTAATTGAGT
TGAGTCCGAGTTCGAGAGATATAACTAG
Found at i:18672 original size:46 final size:46
Alignment explanation
Indices: 18620--18795 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
18610 TGGTTGAGCA
*
18620 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
18666 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
18711 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
18759 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18796 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:18730 original size:93 final size:93
Alignment explanation
Indices: 18617--18787 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
18607 GGATGGTTGA
* * **
18617 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18682 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
18710 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18775 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
18788 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22581 original size:13 final size:12
Alignment explanation
Indices: 22559--22592 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
22549 AGCTCGCCCG
22559 TATTAATTTTTTA
1 TATT-ATTTTTTA
22572 TATTA-TTTTTA
1 TATTATTTTTTA
22583 TATTATTTTT
1 TATTATTTTT
22593 AAATATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 11 0.55
12 5 0.25
13 4 0.20
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TATTATTTTTTA
Found at i:22598 original size:13 final size:11
Alignment explanation
Indices: 22566--22593 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
22556 CCGTATTAAT
22566 TTTTTATATTA
1 TTTTTATATTA
22577 TTTTTATATTA
1 TTTTTATATTA
22588 TTTTTA
1 TTTTTA
22594 AATATATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTTATATTA
Found at i:22757 original size:30 final size:31
Alignment explanation
Indices: 22699--22761 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 31
22689 TTAACAAGTC
22699 AATGCCTCTAAAATAATAACAAAAAATTAACA
1 AATGCCTCTAAAATAATAAC-AAAAATTAACA
*
22731 AATGCCTTTAAAATAATAAC-AAAATTAACA
1 AATGCCTCTAAAATAATAACAAAAATTAACA
22761 A
1 A
22762 GAAAATAAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 11 0.37
32 19 0.63
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (31 bp):
AATGCCTCTAAAATAATAACAAAAATTAACA
Found at i:25785 original size:15 final size:14
Alignment explanation
Indices: 25756--25782 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25746 CTCTTTTTCC
25756 TTCATTAGGTTTTA
1 TTCATTAGGTTTTA
25770 TTCATTAGGTTTT
1 TTCATTAGGTTTT
25783 TATCCTACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.07, G:0.15, T:0.59
Consensus pattern (14 bp):
TTCATTAGGTTTTA
Found at i:26104 original size:53 final size:53
Alignment explanation
Indices: 26023--26136 Score: 219
Period size: 53 Copynumber: 2.2 Consensus size: 53
26013 TATATATAAC
26023 TCTTTTATAAATGAAAAGAGGAGACGAGAAAATTCTCTATTTACTTTAAGTGT
1 TCTTTTATAAATGAAAAGAGGAGACGAGAAAATTCTCTATTTACTTTAAGTGT
*
26076 TCTTTTATAAATGAAAAGAGGAGCCGAGAAAATTCTCTATTTACTTTAAGTGT
1 TCTTTTATAAATGAAAAGAGGAGACGAGAAAATTCTCTATTTACTTTAAGTGT
26129 TCTTTTAT
1 TCTTTTAT
26137 TTAATTAATT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 60 1.00
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.39
Consensus pattern (53 bp):
TCTTTTATAAATGAAAAGAGGAGACGAGAAAATTCTCTATTTACTTTAAGTGT
Found at i:30456 original size:19 final size:19
Alignment explanation
Indices: 30434--30489 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 19
30424 TTAATATGAC
30434 TTTTAATTAATATTTAATA
1 TTTTAATTAATATTTAATA
* *
30453 TTTTAAATT-TTATTTAGTA
1 TTTT-AATTAATATTTAATA
* *
30472 TTTTTATAAAT-TTTAATA
1 TTTTAATTAATATTTAATA
30490 ATGTTTTAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
18 8 0.28
19 17 0.59
20 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTAATTAATATTTAATA
Found at i:33408 original size:21 final size:21
Alignment explanation
Indices: 33357--33408 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
33347 GAAATCTCAT
33357 ACGCCAGTGTGGCCAAAGGAC
1 ACGCCAGTGTGGCCAAAGGAC
*
33378 ACGGCC-GTGT-GCCCAAGGCAC
1 AC-GCCAGTGTGGCCAAAGG-AC
33399 ACGCCAGTGT
1 ACGCCAGTGT
33409 TCAAATTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 10 0.37
21 14 0.52
22 3 0.11
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.12
Consensus pattern (21 bp):
ACGCCAGTGTGGCCAAAGGAC
Found at i:36663 original size:45 final size:44
Alignment explanation
Indices: 36591--36712 Score: 127
Period size: 45 Copynumber: 2.7 Consensus size: 44
36581 TGTTCCAAAG
** * ** *
36591 AATGCCATGGTATCTTCCAACCATGGTCTTATGCATTCCCGAAAT
1 AATGCCATAATATCTTTCAACTGTGGTCTTAT-CATTACCGAAAT
* * * *
36636 AGTGCCATAGTATCTTTCAATTGTGGTCTTGATCATTACCGATAT
1 AATGCCATAATATCTTTCAACTGTGGTCTT-ATCATTACCGAAAT
*
36681 AATGCCTTAATATCTTTCAACTGTGGTCTTAT
1 AATGCCATAATATCTTTCAACTGTGGTCTTAT
36713 TCGTATTGGC
Statistics
Matches: 64, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 2 0.03
45 60 0.94
46 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (44 bp):
AATGCCATAATATCTTTCAACTGTGGTCTTATCATTACCGAAAT
Found at i:36729 original size:45 final size:45
Alignment explanation
Indices: 36680--36844 Score: 149
Period size: 45 Copynumber: 3.7 Consensus size: 45
36670 ATTACCGATA
* * *
36680 TAATGCCTTAATATCTTTCAACTGTGGTCTTATTCGTATTGGCTT
1 TAATGCCATAATATCTTTCAACTATGGTCTTATTCATATTGGCTT
* * ** * *
36725 TAATGCCATAGTATCTTTCAACCATGGTCTTACACATTTTGGGTT
1 TAATGCCATAATATCTTTCAACTATGGTCTTATTCATATTGGCTT
* *
36770 TAGTGCCATAATATCGTTCAACTATGGTCTTATT-AT-TTCGG-TT
1 TAATGCCATAATATCTTTCAACTATGGTCTTATTCATATT-GGCTT
** *
36813 TAAATGTTATGATATCTTTCAA-TCATGGTCTT
1 T-AATGCCATAATATCTTTCAACT-ATGGTCTT
36845 TCTCGTTTCT
Statistics
Matches: 97, Mismatches: 20, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
43 6 0.06
44 27 0.28
45 64 0.66
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (45 bp):
TAATGCCATAATATCTTTCAACTATGGTCTTATTCATATTGGCTT
Found at i:40132 original size:79 final size:82
Alignment explanation
Indices: 40021--40205 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
40011 GCTACTCGTT
* *
40021 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
40084 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
40101 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
40164 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
40181 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
40206 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:40205 original size:40 final size:40
Alignment explanation
Indices: 40002--40205 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
39992 CGGAATTTAA
** *
40002 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
40042 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
40082 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
40121 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
40161 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
40201 CCGGA
1 CCGGA
40206 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48085 original size:79 final size:82
Alignment explanation
Indices: 47974--48158 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
47964 GCTACTCGTT
* *
47974 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
48037 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
48054 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
48117 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
48134 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48159 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:48158 original size:40 final size:40
Alignment explanation
Indices: 47955--48158 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
47945 CGGAATTTAA
** *
47955 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47995 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48035 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48074 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48114 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48154 CCGGA
1 CCGGA
48159 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Done.