genome.fa.s395.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1154
Parameters: 2 7 7 80 10 50 1000
Length:  38101

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13615--13731	53	2.2	54	89	6	175	29	32	16	21	1.95
13642--13731	28	3.3	27	68	14	78	31	28	16	23	1.96
13721--13773	25	2.2	24	83	12	65	24	32	13	30	1.93
13639--13760	53	2.3	52	86	5	158	28	30	16	24	1.96
13892--14034	43	3.3	43	86	0	187	34	31	21	12	1.91
14023--14143	40	3.0	40	92	0	179	27	31	21	19	1.98
20531--20589	10	5.7	10	80	6	55	37	18	10	33	1.85
20539--20601	10	6.0	11	75	15	53	31	20	12	34	1.90
20531--20589	31	1.9	31	92	0	100	37	18	10	33	1.85
24781--25216	47	9.3	47	92	0	719	27	29	8	34	1.86
27426--27555	47	2.8	46	81	13	160	30	29	19	21	1.97
27434--27574	46	3.0	44	78	14	135	29	29	19	22	1.98
33353--33522	85	2.0	84	98	1	331	38	8	25	27	1.84
35788--35989	49	4.3	47	91	6	320	33	7	28	30	1.86
35786--35989	95	2.2	93	95	3	365	32	7	28	30	1.86
35959--36021	32	2.0	31	93	6	110	34	0	30	34	1.58
35971--36021	16	3.1	17	78	21	72	37	0	27	35	1.57
35815--36161	172	2.0	172	94	4	610	32	6	29	30	1.84
35910--36161	93	3.0	79	88	10	328	32	6	30	30	1.82
35989--36254	47	5.7	47	89	1	401	31	8	31	28	1.86
35989--36254	93	2.9	94	89	1	401	31	8	31	28	1.86
35989--36254	140	1.9	140	92	1	444	31	8	31	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36369--36510	36	3.9	37	87	3	200	23	19	30	26	1.98
36369--36506	73	1.9	72	86	4	197	23	18	31	26	1.97

Tables:   1

The End!