Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 100 of 253
Found at i:31225573 original size:11 final size:12
Alignment explanation
Indices: 31225541--31225571 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
31225531 TTGAGAGAAC
31225541 TTGAAAAAGCCT
1 TTGAAAAAGCCT
31225553 TTGAAAAAGCCT
1 TTGAAAAAGCCT
31225565 TTGAAAA
1 TTGAAAA
31225572 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:31227781 original size:30 final size:30
Alignment explanation
Indices: 31227747--31227843 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
31227737 AGCTCACTCC
31227747 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
31227777 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
31227807 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
31227837 TAGCTCA
1 TAGCTCA
31227844 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:31233131 original size:12 final size:11
Alignment explanation
Indices: 31233114--31233154 Score: 73
Period size: 11 Copynumber: 3.6 Consensus size: 11
31233104 TTGTAGATTC
31233114 AAAAAAAATTG
1 AAAAAAAATTG
31233125 AAAAAAAATTG
1 AAAAAAAATTG
31233136 AAAAAAAATATG
1 AAAAAAAAT-TG
31233148 AAAAAAA
1 AAAAAAA
31233155 TTGCATACGG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 20 0.69
12 9 0.31
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (11 bp):
AAAAAAAATTG
Found at i:31239699 original size:24 final size:24
Alignment explanation
Indices: 31239667--31239807 Score: 158
Period size: 24 Copynumber: 5.9 Consensus size: 24
31239657 TCGGTCAAGG
* * *
31239667 AAATTCGCACAAATAGTGCCATGC
1 AAATCCGCACACATAGTGCCATTC
* *
31239691 TAACCCGCACACATAGTGCC-TTGC
1 AAATCCGCACACATAGTGCCATT-C
* * * *
31239715 TAATCCACAAACGTAGTGCCATTC
1 AAATCCGCACACATAGTGCCATTC
*
31239739 AAATCCGCACACATAGTACCATTC
1 AAATCCGCACACATAGTGCCATTC
*
31239763 AAATCCACACACATAGTGCCATTC
1 AAATCCGCACACATAGTGCCATTC
*
31239787 GAATCCGCACACATAGTGCCA
1 AAATCCGCACACATAGTGCCA
31239808 ATGTCATTTC
Statistics
Matches: 97, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
23 1 0.01
24 94 0.97
25 2 0.02
ACGTcount: A:0.34, C:0.32, G:0.13, T:0.21
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCCATTC
Found at i:31249344 original size:14 final size:14
Alignment explanation
Indices: 31249307--31249347 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
31249297 CTTTTCTTTC
*
31249307 TTTTCTTTTCACTCT
1 TTTTCTTTT-TCTCT
31249322 TTTT-TTTTTCTCT
1 TTTTCTTTTTCTCT
31249335 TTTTCTTTTTCTC
1 TTTTCTTTTTCTC
31249348 GATCAATAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 8 0.33
14 12 0.50
15 4 0.17
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTCTTTTTCTCT
Found at i:31251392 original size:16 final size:17
Alignment explanation
Indices: 31251370--31251404 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
31251360 ACTTCTCTCT
*
31251370 TTTTTTTTAATTCTGAA
1 TTTTTTTTAATACTGAA
31251387 TTTTTTTTAATACTGAA
1 TTTTTTTTAATACTGAA
31251404 T
1 T
31251405 ACACAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.63
Consensus pattern (17 bp):
TTTTTTTTAATACTGAA
Found at i:31254008 original size:27 final size:27
Alignment explanation
Indices: 31253978--31254133 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
31253968 TGCTATTCAC
* *
31253978 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
31254005 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
31254032 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
31254060 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
31254087 TCTTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
31254114 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
31254134 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:31254049 original size:55 final size:55
Alignment explanation
Indices: 31253983--31254134 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
31253973 TTCACTCAAC
* *
31253983 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* ** * ***
31254038 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
31254092 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
31254135 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:31259645 original size:55 final size:55
Alignment explanation
Indices: 31259561--31259672 Score: 188
Period size: 55 Copynumber: 2.0 Consensus size: 55
31259551 CGTGACGATT
**
31259561 ATTGCCCACACTAGCTACCGAAGTAGCTCGGGATTCCATCGATGATCTTGATCTG
1 ATTGCCCACACTAGCTACCGAAGTAGCTCGGGAGCCCATCGATGATCTTGATCTG
* *
31259616 ATTGCCCACACTAGCTACCGAAGTAGCTCGGGAGCCCATCGATGGTCTTGCTCTG
1 ATTGCCCACACTAGCTACCGAAGTAGCTCGGGAGCCCATCGATGATCTTGATCTG
31259671 AT
1 AT
31259673 GGAAATTCCC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (55 bp):
ATTGCCCACACTAGCTACCGAAGTAGCTCGGGAGCCCATCGATGATCTTGATCTG
Found at i:31262122 original size:27 final size:27
Alignment explanation
Indices: 31262092--31262246 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
31262082 TGCTATTCAC
* *
31262092 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * *
31262119 TCAAATCGCAC-CTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
31262145 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
31262173 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
31262200 TCTTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
31262227 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
31262247 TGTACAATTT
Statistics
Matches: 104, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
26 15 0.14
27 74 0.71
28 15 0.14
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:31262155 original size:54 final size:55
Alignment explanation
Indices: 31262097--31262247 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
31262087 TTCACTCAAC
*
31262097 TCGCACACTTAGTGCCACGTAATCAAATCGCAC-CTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* ** * ***
31262151 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
31262205 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
31262248 GTACAATTTA
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
54 68 0.85
55 12 0.15
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:31265835 original size:33 final size:33
Alignment explanation
Indices: 31265797--31265859 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
31265787 GATTACTCAC
31265797 TTCACTCG-TTTCTTTT-ACAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
31265830 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
31265860 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.27, G:0.06, T:0.54
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:31265886 original size:21 final size:21
Alignment explanation
Indices: 31265857--31265912 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
31265847 CAAGCTCTCT
*
31265857 TTCAATTTCTTTTTTCGCTTT-
1 TTCATTTTCTTTTTTC-CTTTC
* ** *
31265878 TTCTTTTTCAATTTTCTTTTC
1 TTCATTTTCTTTTTTCCTTTC
31265899 TTCATTTTCTTTTT
1 TTCATTTTCTTTTT
31265913 CTCTCACTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (21 bp):
TTCATTTTCTTTTTTCCTTTC
Found at i:31265905 original size:14 final size:14
Alignment explanation
Indices: 31265856--31265912 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
31265846 TCAAGCTCTC
31265856 TTTCAA-TTTCTTT
1 TTTCAATTTTCTTT
**
31265869 TTTCGCTTTT-TCTT
1 TTTCAATTTTCT-TT
31265883 TTTCAATTTTCTTT
1 TTTCAATTTTCTTT
31265897 TCTTC-ATTTTCTTT
1 T-TTCAATTTTCTTT
31265911 TT
1 TT
31265913 CTCTCACTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
13 6 0.17
14 26 0.72
15 4 0.11
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.72
Consensus pattern (14 bp):
TTTCAATTTTCTTT
Found at i:31265972 original size:18 final size:18
Alignment explanation
Indices: 31265874--31265977 Score: 84
Period size: 18 Copynumber: 5.6 Consensus size: 18
31265864 TCTTTTTTCG
31265874 CTTTTTCTTTTTCAATTTT
1 CTTTTTCTTTTTC-ATTTT
* *
31265893 CTTTTCTTCATTTTCTTTTT
1 C-TTT-TTCTTTTTCATTTT
* **
31265913 CTCTCACTTTTTCGA-TTT
1 CTTTTTCTTTTTC-ATTTT
* *
31265931 CTTTTTCTTTTGCAATTT
1 CTTTTTCTTTTTCATTTT
*
31265949 CTTTTTCTTTTTCGTTTT
1 CTTTTTCTTTTTCATTTT
*
31265967 CTTTTTGTTTT
1 CTTTTTCTTTT
31265978 CTTTCAATTT
Statistics
Matches: 66, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
17 1 0.02
18 46 0.70
19 3 0.05
20 8 0.12
21 8 0.12
ACGTcount: A:0.07, C:0.18, G:0.04, T:0.71
Consensus pattern (18 bp):
CTTTTTCTTTTTCATTTT
Found at i:31265994 original size:6 final size:6
Alignment explanation
Indices: 31265874--31265981 Score: 74
Period size: 6 Copynumber: 17.7 Consensus size: 6
31265864 TCTTTTTTCG
* * * **
31265874 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
** * ** *
31265925 CGATTT CTTTTT CTTTTG CAATTT CTTTTT CTTTTT CGTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
*
31265973 -GTTTT CTTT
1 CTTTTT CTTT
31265982 CAATTTCTTT
Statistics
Matches: 74, Mismatches: 25, Indels: 6
0.70 0.24 0.06
Matches are distributed among these distances:
5 4 0.05
6 58 0.78
7 9 0.12
8 3 0.04
ACGTcount: A:0.06, C:0.19, G:0.04, T:0.71
Consensus pattern (6 bp):
CTTTTT
Found at i:31269346 original size:23 final size:22
Alignment explanation
Indices: 31269294--31269346 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
31269284 TCCACGTCTT
*
31269294 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
31269316 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
31269339 TTTCTTTT
1 TTTCTTTT
31269347 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:31272461 original size:27 final size:27
Alignment explanation
Indices: 31272431--31272492 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
31272421 TTAAACTTGA
*
31272431 TTTTTTTTTGCTC-ACCTTTTTTTT-TCT
1 TTTTTTTTTGCTCGA--TTTTTTTTCACT
31272458 TTTTTTTTTGCTCGATTTTTTTTCACT
1 TTTTTTTTTGCTCGATTTTTTTTCACT
31272485 TTTTTTTT
1 TTTTTTTT
31272493 GAATTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 8 0.25
27 23 0.72
28 1 0.03
ACGTcount: A:0.05, C:0.15, G:0.05, T:0.76
Consensus pattern (27 bp):
TTTTTTTTTGCTCGATTTTTTTTCACT
Found at i:31272530 original size:13 final size:12
Alignment explanation
Indices: 31272473--31272533 Score: 50
Period size: 13 Copynumber: 4.6 Consensus size: 12
31272463 TTTTGCTCGA
*
31272473 TTTTTTTTCACT
1 TTTTTTTTCAAT
*
31272485 TTTTTTTTGAATT
1 TTTTTTTTCAA-T
31272498 TTTTTTTTCAAT
1 TTTTTTTTCAAT
31272510 CAAATTTTTTTTCGAAT
1 ----TTTTTTTTC-AAT
31272527 TTTTTTT
1 TTTTTTT
31272534 GATTTTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
12 10 0.25
13 18 0.45
16 9 0.22
17 3 0.08
ACGTcount: A:0.16, C:0.08, G:0.03, T:0.72
Consensus pattern (12 bp):
TTTTTTTTCAAT
Found at i:31272538 original size:10 final size:11
Alignment explanation
Indices: 31272512--31272544 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
31272502 TTTTCAATCA
31272512 AATTTTTTTTCG
1 AATTTTTTTT-G
31272524 AATTTTTTTTG
1 AATTTTTTTTG
31272535 -ATTTTTTTTG
1 AATTTTTTTTG
31272545 TTACTCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 1 0.05
12 10 0.48
ACGTcount: A:0.15, C:0.03, G:0.09, T:0.73
Consensus pattern (11 bp):
AATTTTTTTTG
Found at i:31275152 original size:20 final size:20
Alignment explanation
Indices: 31275129--31275175 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
31275119 GGGTTAAGAT
*
31275129 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
31275149 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
31275169 TGAGCTG
1 TGAGCTG
31275176 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:31276899 original size:48 final size:48
Alignment explanation
Indices: 31276844--31276949 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
31276834 TTGTCTTTTC
*
31276844 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
31276892 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
31276940 TTTCTTTTTC
1 TTTCTTTTTC
31276950 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:31278044 original size:11 final size:11
Alignment explanation
Indices: 31278030--31278054 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
31278020 TTTTTTTTTT
31278030 TTTTTTTTGAA
1 TTTTTTTTGAA
31278041 TTTTTTTTGAA
1 TTTTTTTTGAA
31278052 TTT
1 TTT
31278055 CTTCTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:31279570 original size:20 final size:20
Alignment explanation
Indices: 31279547--31279593 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
31279537 GGGTTAAGAT
*
31279547 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
31279567 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
31279587 TGAGCTG
1 TGAGCTG
31279594 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:31282077 original size:22 final size:20
Alignment explanation
Indices: 31282055--31282095 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
31282045 ATTAGTGTAA
31282055 TTAGTTTAAGTTGTTTAAATAAT
1 TTAG-TTAAG-TG-TTAAATAAT
31282078 TTAGTTAAGTGTTAAATA
1 TTAGTTAAGTGTTAAATA
31282096 TGTCTTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 2 0.11
22 5 0.28
23 4 0.22
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
TTAGTTAAGTGTTAAATAAT
Found at i:31284892 original size:31 final size:29
Alignment explanation
Indices: 31284837--31284896 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
31284827 TGCATTATAT
*
31284837 ATATATATGCTGAATTAAGTTGTAAAATA
1 ATATAAATGCTGAATTAAGTTGTAAAATA
31284866 ATATAAATG-TGAAGTTGAAGTATGTAAAATA
1 ATATAAATGCTGAA-TT-AAGT-TGTAAAATA
31284897 TGAACTGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 4 0.15
29 10 0.37
30 4 0.15
31 9 0.33
ACGTcount: A:0.47, C:0.02, G:0.17, T:0.35
Consensus pattern (29 bp):
ATATAAATGCTGAATTAAGTTGTAAAATA
Found at i:31287119 original size:48 final size:48
Alignment explanation
Indices: 31287054--31287188 Score: 182
Period size: 48 Copynumber: 2.8 Consensus size: 48
31287044 GGAAGTACAT
* *
31287054 GTGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-
1 GTGAGATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAC
* * *
31287101 GATGAGATCCCGTATAAGAACATGTCTGGGACATGGCATCGGCCTCGAC
1 G-TGAGATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAC
* * *
31287150 GTGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GTGAGATCCCGTGTAAGACCATGTCTGGGACATGGCATC
31287189 ATTAGGAGAC
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
47 1 0.01
48 74 0.97
49 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (48 bp):
GTGAGATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAC
Found at i:31288978 original size:30 final size:30
Alignment explanation
Indices: 31288883--31288980 Score: 81
Period size: 30 Copynumber: 3.3 Consensus size: 30
31288873 TTAAACTAAA
* *
31288883 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAA-T
* * * * * * *
31288914 -TGAGCTGAGATTAAACTCCTAAGTTGAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAT
* *
31288943 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAT
31288973 ATGAGCTA
1 ATGAGCTA
31288981 GGAGTGAGCT
Statistics
Matches: 48, Mismatches: 18, Indels: 3
0.70 0.26 0.04
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
ATGAGCTAAGATTTAGCTCGTGAGCTGAAT
Found at i:31291671 original size:30 final size:30
Alignment explanation
Indices: 31291637--31291735 Score: 101
Period size: 30 Copynumber: 3.3 Consensus size: 30
31291627 TAAACTAAAA
*
31291637 TGAGCTAAGCCTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGCTTAGCTCGTGAGCTAAAGT
* * * * * *
31291667 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGCTTAGCTCGTGAGCTAAAGT
* *
31291697 TGAGCTAAGGTTTAGCTCGTGAGTTAAAAG-
1 TGAGCTAAGGCTTAGCTCGTGAGCT-AAAGT
31291727 TGAGCTAAG
1 TGAGCTAAG
31291736 AGTGAGCTCG
Statistics
Matches: 53, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
30 50 0.94
31 3 0.06
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (30 bp):
TGAGCTAAGGCTTAGCTCGTGAGCTAAAGT
Found at i:31291813 original size:21 final size:20
Alignment explanation
Indices: 31291763--31291814 Score: 95
Period size: 20 Copynumber: 2.5 Consensus size: 20
31291753 TCAGGCAAGA
31291763 TGGATTGAGCTCAAATAAGC
1 TGGATTGAGCTCAAATAAGC
31291783 TGGATTGAGCTCAAATAAGC
1 TGGATTGAGCTCAAATAAGC
31291803 TGGATTTGAGCT
1 TGGA-TTGAGCT
31291815 GGACGGAGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 24 0.77
21 7 0.23
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (20 bp):
TGGATTGAGCTCAAATAAGC
Found at i:31293207 original size:20 final size:20
Alignment explanation
Indices: 31293161--31293207 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
31293151 AGCTCGTTTC
* *
31293161 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGATCAAGT
* *
31293181 CAACTCACTCAAGATCAATT
1 CAGCTCACTCAAGATCAAGT
31293201 CAGCTCA
1 CAGCTCA
31293208 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.32, C:0.34, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGATCAAGT
Found at i:31294745 original size:23 final size:25
Alignment explanation
Indices: 31294705--31294759 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
31294695 AGAAGAAATT
** *
31294705 CAAAAAATAAAAATAAAAAAATTGA
1 CAAAAAAGGAAAATAAAAAAAGTGA
*
31294730 -AAAAAAGGAAAA-AAAAGAAGTGA
1 CAAAAAAGGAAAATAAAAAAAGTGA
31294753 CAAAAAA
1 CAAAAAA
31294760 ATCGAGTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.76, C:0.04, G:0.11, T:0.09
Consensus pattern (25 bp):
CAAAAAAGGAAAATAAAAAAAGTGA
Found at i:31295843 original size:6 final size:6
Alignment explanation
Indices: 31295810--31295928 Score: 69
Period size: 6 Copynumber: 19.2 Consensus size: 6
31295800 AAAGAAATTG
* * * ** *
31295810 AAAG-A AAACAA AAAGAA AACGAA GAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
31295857 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
31295908 AAAGAA AAAGCGAA AAAGAA A
1 AAAGAA AAA--GAA AAAGAA A
31295929 TTGAAAGAGA
Statistics
Matches: 82, Mismatches: 26, Indels: 11
0.69 0.22 0.09
Matches are distributed among these distances:
5 3 0.04
6 62 0.76
7 7 0.09
8 10 0.12
ACGTcount: A:0.71, C:0.04, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:31295899 original size:14 final size:13
Alignment explanation
Indices: 31295878--31295934 Score: 55
Period size: 14 Copynumber: 4.3 Consensus size: 13
31295868 AAAAGTGAGA
31295878 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
31295890 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
**
31295905 GAAAAAGAAAAAGC
1 GAAAAAG-AAAATT
31295919 GAAAAAG-AAATT
1 GAAAAAGAAAATT
31295931 GAAA
1 GAAA
31295935 GAGAGCTTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 8 0.22
13 6 0.16
14 21 0.57
15 2 0.05
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:31296088 original size:47 final size:47
Alignment explanation
Indices: 31295997--31296101 Score: 119
Period size: 47 Copynumber: 2.2 Consensus size: 47
31295987 GAGTGTCATG
*
31295997 GAAAAAGAAATTGAGATTGAAAAGGATGTGAAAAAGAGAA-AGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAGATGTGAAAAAGAGAAGA-AAATC
*
31296044 GAAAAAGAAATTGAGATTGAACAAA-AGTGTGAGGAAAA-AG-AGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAGA-TGTGA--AAAAGAGAAGAAAATC
31296092 GAAAAAGAAA
1 GAAAAAGAAA
31296102 GAAAAGACAA
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
47 22 0.43
48 22 0.43
49 3 0.06
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAGATGTGAAAAAGAGAAGAAAATC
Found at i:31297814 original size:20 final size:20
Alignment explanation
Indices: 31297768--31297814 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
31297758 AGCTCGTTTC
*
31297768 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
31297788 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
31297808 CAGCTCA
1 CAGCTCA
31297815 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:31299352 original size:23 final size:25
Alignment explanation
Indices: 31299312--31299366 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
31299302 AGAAGAAATT
** *
31299312 CAAAAAATAAAAATAAAAAAATTGA
1 CAAAAAAGGAAAATAAAAAAAGTGA
*
31299337 -AAAAAAGGAAAA-AAAAGAAGTGA
1 CAAAAAAGGAAAATAAAAAAAGTGA
31299360 CAAAAAA
1 CAAAAAA
31299367 ATCGAGTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.76, C:0.04, G:0.11, T:0.09
Consensus pattern (25 bp):
CAAAAAAGGAAAATAAAAAAAGTGA
Found at i:31300448 original size:6 final size:6
Alignment explanation
Indices: 31300415--31300522 Score: 65
Period size: 6 Copynumber: 17.7 Consensus size: 6
31300405 AAAGAAATTG
* * * ** *
31300415 AAAG-A AAACAA AAAGAA AACGAA GAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
31300462 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
31300513 AAAGAA AAAG
1 AAAGAA AAAG
31300523 CGAAAAAAGA
Statistics
Matches: 73, Mismatches: 26, Indels: 7
0.69 0.25 0.07
Matches are distributed among these distances:
5 3 0.04
6 59 0.81
7 7 0.10
8 4 0.05
ACGTcount: A:0.70, C:0.04, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:31300476 original size:18 final size:18
Alignment explanation
Indices: 31300419--31300477 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
31300409 AAATTGAAAG
* *
31300419 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAATCGA
* * *
31300437 AGAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAATCGA
31300455 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAATCGA
31300473 AAAAG
1 AAAAG
31300478 TGAGAGAAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.71, C:0.07, G:0.17, T:0.05
Consensus pattern (18 bp):
AAAAGAAAAAGAAATCGA
Found at i:31300504 original size:14 final size:13
Alignment explanation
Indices: 31300483--31300520 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
31300473 AAAAGTGAGA
31300483 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
31300495 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
31300510 GAAAAAGAAAA
1 GAAAAAGAAAA
31300521 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:31300534 original size:21 final size:21
Alignment explanation
Indices: 31300484--31300534 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
31300474 AAAGTGAGAG
*
31300484 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
31300505 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
31300526 AAAAAGAAA
1 AAAAAGAAA
31300535 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:31300538 original size:27 final size:27
Alignment explanation
Indices: 31300436--31300540 Score: 77
Period size: 27 Copynumber: 3.8 Consensus size: 27
31300426 AAAGAAAACG
* *
31300436 AAGAAGAAAAAGAAATTGCAAAAGAAA
1 AAGAAGAAAAAAAAATTGAAAAAGAAA
*** **
31300463 AAGAAATCGAAAAAGTGAGAGAAAAAGAAA
1 AAG-AA--GAAAAAAAAATTGAAAAAGAAA
* *
31300493 ATGAAGAAAAGAAAATTGAAAAAGAAA
1 AAGAAGAAAAAAAAATTGAAAAAGAAA
*
31300520 AAG-CGAAAAAAGAAATTGAAA
1 AAGAAGAAAAAA-AAATTGAAA
31300541 GAGAGCTTGA
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
26 6 0.10
27 30 0.51
28 2 0.03
29 2 0.03
30 19 0.32
ACGTcount: A:0.69, C:0.03, G:0.20, T:0.09
Consensus pattern (27 bp):
AAGAAGAAAAAAAAATTGAAAAAGAAA
Found at i:31300682 original size:48 final size:47
Alignment explanation
Indices: 31300603--31300708 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
31300593 GAGTGTCATG
*
31300603 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
31300651 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
31300699 GAAAAAGAAA
1 GAAAAAGAAA
31300709 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:31302421 original size:20 final size:20
Alignment explanation
Indices: 31302375--31302421 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
31302365 AGCTCGTTTC
*
31302375 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
31302395 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
31302415 CAGCTCA
1 CAGCTCA
31302422 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:31305477 original size:44 final size:44
Alignment explanation
Indices: 31305406--31305509 Score: 154
Period size: 44 Copynumber: 2.4 Consensus size: 44
31305396 CTGAATTTGA
* *
31305406 GGCACTATGTGTGCGATACCGATATGAGTTCGGTTTAATGTAAC
1 GGCACTAAGTGTGCGATACCAATATGAGTTCGGTTTAATGTAAC
* * * *
31305450 GGCATTAAGTGTGCGATACTAATATGAGTTTGGTTTAATGTAAT
1 GGCACTAAGTGTGCGATACCAATATGAGTTCGGTTTAATGTAAC
31305494 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
31305510 GTTCGTTGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (44 bp):
GGCACTAAGTGTGCGATACCAATATGAGTTCGGTTTAATGTAAC
Found at i:31319152 original size:21 final size:22
Alignment explanation
Indices: 31319129--31319173 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
31319119 AAGAGAAAAC
31319129 AAAG-AAAAGAAAAGAAAAAGCA
1 AAAGCAAAAG-AAAGAAAAAGCA
31319151 AAAGCAAAAG-AAGAAAAAG-A
1 AAAGCAAAAGAAAGAAAAAGCA
31319171 AAA
1 AAA
31319174 TGATCTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.18
21 9 0.41
22 4 0.18
23 5 0.23
ACGTcount: A:0.78, C:0.04, G:0.18, T:0.00
Consensus pattern (22 bp):
AAAGCAAAAGAAAGAAAAAGCA
Found at i:31320360 original size:55 final size:55
Alignment explanation
Indices: 31320276--31320412 Score: 267
Period size: 55 Copynumber: 2.5 Consensus size: 55
31320266 AGCAGCAAGG
31320276 GAGATGTTCCCATGCATGGAACGGCATTTAAAGGAAGCAAAGACATGGATTTAAT
1 GAGATGTTCCCATGCATGGAACGGCATTTAAAGGAAGCAAAGACATGGATTTAAT
31320331 GAGATGTTCCCATGCATGGAACGGCATTTAAAGGAAGCAAAGACATGGATTTAAT
1 GAGATGTTCCCATGCATGGAACGGCATTTAAAGGAAGCAAAGACATGGATTTAAT
31320386 GAGATGTTCCCATGCATGG-ACGGCATT
1 GAGATGTTCCCATGCATGGAACGGCATT
31320413 AATGAAAGCA
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
54 8 0.10
55 74 0.90
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (55 bp):
GAGATGTTCCCATGCATGGAACGGCATTTAAAGGAAGCAAAGACATGGATTTAAT
Found at i:31321521 original size:13 final size:14
Alignment explanation
Indices: 31321503--31321565 Score: 53
Period size: 13 Copynumber: 4.6 Consensus size: 14
31321493 ACGGTATTGT
31321503 AAAAAAAATAT--A
1 AAAAAAAATATCAA
31321515 AAAAAAAAT-TCGAAAA
1 AAAAAAAATATC---AA
* *
31321531 AAAAAAAATTTGAA
1 AAAAAAAATATCAA
31321545 AAAAAAAAT-TCAA
1 AAAAAAAATATCAA
31321558 AAAAAAAA
1 AAAAAAAA
31321566 AGTTTGTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
11 1 0.02
12 9 0.21
13 11 0.26
14 11 0.26
16 10 0.23
17 1 0.02
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.14
Consensus pattern (14 bp):
AAAAAAAATATCAA
Found at i:31321522 original size:14 final size:14
Alignment explanation
Indices: 31321503--31321566 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
31321493 ACGGTATTGT
31321503 AAAAAAAATAT-AA
1 AAAAAAAATATAAA
*
31321516 AAAAAAATTCGA-AAA
1 AAAAAAAAT--ATAAA
* *
31321531 AAAAAAAATTTGAA
1 AAAAAAAATATAAA
31321545 AAAAAAAAT-TCAAA
1 AAAAAAAATAT-AAA
31321559 AAAAAAAA
1 AAAAAAAA
31321567 GTTTGTATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
13 9 0.22
14 21 0.51
15 11 0.27
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.14
Consensus pattern (14 bp):
AAAAAAAATATAAA
Found at i:31321533 original size:16 final size:16
Alignment explanation
Indices: 31321514--31321566 Score: 76
Period size: 14 Copynumber: 3.5 Consensus size: 16
31321504 AAAAAAATAT
31321514 AAAAAAAAATTCGAAA
1 AAAAAAAAATTCGAAA
*
31321530 AAAAAAAAATTTG--A
1 AAAAAAAAATTCGAAA
31321544 AAAAAAAAATTC-AAA
1 AAAAAAAAATTCGAAA
31321559 AAAAAAAA
1 AAAAAAAA
31321567 GTTTGTATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
14 12 0.36
15 9 0.27
16 12 0.36
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.13
Consensus pattern (16 bp):
AAAAAAAAATTCGAAA
Found at i:31321548 original size:30 final size:29
Alignment explanation
Indices: 31321514--31321571 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
31321504 AAAAAAATAT
31321514 AAAAAAAAATTCGAAAAAAAAAAAATTTGA
1 AAAAAAAAATTC-AAAAAAAAAAAATTTGA
*
31321544 AAAAAAAAATTCAAAAAAAAAAAGTTTG
1 AAAAAAAAATTCAAAAAAAAAAAATTTG
31321572 TATTCAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.17
Consensus pattern (29 bp):
AAAAAAAAATTCAAAAAAAAAAAATTTGA
Found at i:31321625 original size:13 final size:13
Alignment explanation
Indices: 31321607--31321662 Score: 58
Period size: 13 Copynumber: 3.9 Consensus size: 13
31321597 ATTTAGTATT
31321607 GAAGAAAAAAAAA
1 GAAGAAAAAAAAA
31321620 GAAGAAAAAAAAA
1 GAAGAAAAAAAAA
*
31321633 TTCGGAATTAAAAAAAAA
1 ----GAA-GAAAAAAAAA
31321651 GAAGAAAAAAAA
1 GAAGAAAAAAAA
31321663 TCAAAATTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
13 21 0.58
14 3 0.08
17 3 0.08
18 9 0.25
ACGTcount: A:0.77, C:0.02, G:0.14, T:0.07
Consensus pattern (13 bp):
GAAGAAAAAAAAA
Found at i:31321681 original size:31 final size:31
Alignment explanation
Indices: 31321611--31321680 Score: 99
Period size: 30 Copynumber: 2.3 Consensus size: 31
31321601 AGTATTGAAG
**
31321611 AAAAAAAAAGAAGAAAAAAAAATTCGGAATT
1 AAAAAAAAAGAAGAAAAAAAAATTCAAAATT
31321642 AAAAAAAAAGAAG-AAAAAAAA-TCAAAATT
1 AAAAAAAAAGAAGAAAAAAAAATTCAAAATT
31321671 GAAAAAAAAA
1 -AAAAAAAAA
31321681 AAAAAGTGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
29 6 0.17
30 17 0.47
31 13 0.36
ACGTcount: A:0.77, C:0.03, G:0.10, T:0.10
Consensus pattern (31 bp):
AAAAAAAAAGAAGAAAAAAAAATTCAAAATT
Found at i:31324317 original size:55 final size:55
Alignment explanation
Indices: 31324233--31324369 Score: 267
Period size: 55 Copynumber: 2.5 Consensus size: 55
31324223 AGCAGCAAGG
31324233 GAGATGTTCCCATGCATGGAACGGCATTTAAAGGAAGCAAAGACATGGATTTAAT
1 GAGATGTTCCCATGCATGGAACGGCATTTAAAGGAAGCAAAGACATGGATTTAAT
31324288 GAGATGTTCCCATGCATGGAACGGCATTTAAAGGAAGCAAAGACATGGATTTAAT
1 GAGATGTTCCCATGCATGGAACGGCATTTAAAGGAAGCAAAGACATGGATTTAAT
31324343 GAGATGTTCCCATGCATGG-ACGGCATT
1 GAGATGTTCCCATGCATGGAACGGCATT
31324370 AATGAAAGCA
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
54 8 0.10
55 74 0.90
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (55 bp):
GAGATGTTCCCATGCATGGAACGGCATTTAAAGGAAGCAAAGACATGGATTTAAT
Found at i:31328039 original size:21 final size:21
Alignment explanation
Indices: 31328013--31328075 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
31328003 TTGGTATTTG
31328013 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
31328034 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
31328055 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
31328076 ACGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:31331732 original size:15 final size:15
Alignment explanation
Indices: 31331712--31331759 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
31331702 TCAAAGGTGG
31331712 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
31331727 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
31331742 -TTTATGGATATAAA
1 GTTTATGGATATGAA
31331756 GTTT
1 GTTT
31331760 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:31332882 original size:24 final size:23
Alignment explanation
Indices: 31332828--31332883 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
31332818 GATTAATTAA
**
31332828 GAAATGGTATTTGGTTTTGGTAC
1 GAAATGGTATTTGGAATTGGTAC
***
31332851 GTTTTGGTATTTGGGAATTGGTAC
1 GAAATGGTATTT-GGAATTGGTAC
31332875 GAAATGGTA
1 GAAATGGTA
31332884 ATGGTTCAAA
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.23, C:0.04, G:0.32, T:0.41
Consensus pattern (23 bp):
GAAATGGTATTTGGAATTGGTAC
Found at i:31337390 original size:13 final size:13
Alignment explanation
Indices: 31337372--31337396 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31337362 AAACCGTATG
31337372 CAATTTTTTTTTT
1 CAATTTTTTTTTT
31337385 CAATTTTTTTTT
1 CAATTTTTTTTT
31337397 CTTTTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (13 bp):
CAATTTTTTTTTT
Found at i:31337750 original size:22 final size:22
Alignment explanation
Indices: 31337720--31337763 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
31337710 TTTGGTATTT
31337720 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
31337742 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
31337764 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:31342719 original size:18 final size:18
Alignment explanation
Indices: 31342698--31342732 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
31342688 TTTTTCTTTT
31342698 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
31342716 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
31342733 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:31342729 original size:6 final size:6
Alignment explanation
Indices: 31342720--31342824 Score: 52
Period size: 6 Copynumber: 17.2 Consensus size: 6
31342710 TCAATCTCAA
* * * ** **
31342720 TTTCTT TTTCAAT TTTCTTT TCTTCAT TTTCTT TTTCTC TCACTAT TTTGAT
1 TTTCTT TTTC-TT TTTC-TT T-TTCTT TTTCTT TTTCTT TTTCT-T TTTCTT
* ** * *
31342772 TT-CTT TTTCTT TTGCAA TTTCTT TTTCTT TTTCGT TTTCTT TTT-GT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
31342818 TTTCTT T
1 TTTCTT T
31342825 CAATTTCTTT
Statistics
Matches: 69, Mismatches: 25, Indels: 10
0.66 0.24 0.10
Matches are distributed among these distances:
5 7 0.10
6 49 0.71
7 10 0.14
8 3 0.04
ACGTcount: A:0.08, C:0.17, G:0.04, T:0.71
Consensus pattern (6 bp):
TTTCTT
Found at i:31342837 original size:6 final size:6
Alignment explanation
Indices: 31342771--31342824 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
31342761 ACTATTTTGA
* ** * *
31342771 TTTCTT TTTCTT TTGCAA TTTCTT TTTCTT TTTCGT TTTCTT TTT-GT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
31342818 TTTCTT T
1 TTTCTT T
31342825 CAATTTCTTT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.04, C:0.15, G:0.06, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:31343548 original size:4 final size:4
Alignment explanation
Indices: 31343539--31343572 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
31343529 AAGTTTTATT
31343539 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
31343573 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:31343580 original size:22 final size:22
Alignment explanation
Indices: 31343522--31343581 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
31343512 AAGTGGCCCA
*
31343522 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
31343546 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
31343567 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
31343582 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:31346455 original size:20 final size:20
Alignment explanation
Indices: 31346432--31346478 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
31346422 GGGTTAAGAT
*
31346432 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
31346452 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
31346472 TGAGCTG
1 TGAGCTG
31346479 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:31350456 original size:30 final size:28
Alignment explanation
Indices: 31350403--31350458 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
31350393 TTCTTCCACG
* *
31350403 CTTTCTTTTTGCTCACTCTCTTTTTCAA
1 CTTTCTTTTTGCACACACTCTTTTTCAA
31350431 CTTTACTTTCTTGCACACACTCTTTTTC
1 CTTT-CTTT-TTGCACACACTCTTTTTC
31350459 TTTTTCGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.12, C:0.30, G:0.04, T:0.54
Consensus pattern (28 bp):
CTTTCTTTTTGCACACACTCTTTTTCAA
Found at i:31351506 original size:17 final size:19
Alignment explanation
Indices: 31351484--31351518 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
31351474 TATGTTCAAA
31351484 TTTTCAG-A-TTTTGTTTT
1 TTTTCAGAATTTTTGTTTT
31351501 TTTTCAGAATTTTTGTTT
1 TTTTCAGAATTTTTGTTT
31351519 GAAATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 1 0.06
19 8 0.50
ACGTcount: A:0.14, C:0.06, G:0.11, T:0.69
Consensus pattern (19 bp):
TTTTCAGAATTTTTGTTTT
Found at i:31352452 original size:10 final size:10
Alignment explanation
Indices: 31352436--31352493 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
31352426 CAACTCCGAC
31352436 CAGCTCAATT
1 CAGCTCAATT
* *
31352446 GAGCTCATTT
1 CAGCTCAATT
31352456 CAGCTCAA-T
1 CAGCTCAATT
31352465 CGAGCTCAATT
1 C-AGCTCAATT
*
31352476 TAGCTACAATT
1 CAGCT-CAATT
31352487 CAGCTCA
1 CAGCTCA
31352494 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 27 0.69
11 10 0.26
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:31352459 original size:20 final size:20
Alignment explanation
Indices: 31352436--31352496 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
31352426 CAACTCCGAC
31352436 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
31352456 CAGCTCAATCGAGCTCAATTT
1 CAGCTCAATTGAGCTC-ATTT
*
31352477 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
31352497 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:31354819 original size:30 final size:30
Alignment explanation
Indices: 31354724--31354820 Score: 83
Period size: 30 Copynumber: 3.2 Consensus size: 30
31354714 CATCAACTCC
* *
31354724 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAAC-TTCAGCTCACGAGCTAAAGCT
* * **
31354754 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAAG-CT
*
31354784 CAGCTCAACTAT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACT-TCAGCTCACGAGCTAAAGCT
31354814 TAGCTCA
1 TAGCTCA
31354821 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
29 2 0.04
30 43 0.84
31 6 0.12
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAAGCT
Found at i:31362350 original size:13 final size:13
Alignment explanation
Indices: 31362332--31362357 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31362322 ACCTGAAAGC
31362332 AATTTAATTCATA
1 AATTTAATTCATA
31362345 AATTTAATTCATA
1 AATTTAATTCATA
31362358 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:31362772 original size:20 final size:21
Alignment explanation
Indices: 31362747--31362785 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
31362737 TCAAACAAGC
31362747 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
31362767 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
31362786 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:31378357 original size:30 final size:28
Alignment explanation
Indices: 31378279--31378362 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 28
31378269 GCAAGACTTT
**
31378279 TCACTTTTTTTTAAACTTGATTTTTTTTGC
1 TCACTTTTTTTT--ACTTTTTTTTTTTTGC
*
31378309 TCACCTTTTTTTTTCTTTTCTTTTTTTTGC
1 TCA-CTTTTTTTTACTTTT-TTTTTTTTGC
31378339 TCGA-TTTTTTTTCACTTTTTTTTT
1 TC-ACTTTTTTTT-ACTTTTTTTTT
31378363 GAATTTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
29 16 0.35
30 20 0.43
31 10 0.22
ACGTcount: A:0.10, C:0.15, G:0.05, T:0.70
Consensus pattern (28 bp):
TCACTTTTTTTTACTTTTTTTTTTTTGC
Found at i:31378359 original size:13 final size:14
Alignment explanation
Indices: 31378354--31378405 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 14
31378344 TTTTTTTCAC
*
31378354 TTTTTTTTT-GAAT
1 TTTTTTTTTCAAAT
31378367 TTTTTTTTTCAATCAAT
1 TTTTTTTTTC-A--AAT
*
31378384 TTTTTTTTTCGAAT
1 TTTTTTTTTCAAAT
31378398 TTTTTTTT
1 TTTTTTTT
31378406 GATTTTTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
13 9 0.27
14 11 0.33
17 13 0.39
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (14 bp):
TTTTTTTTTCAAAT
Found at i:31378410 original size:11 final size:13
Alignment explanation
Indices: 31378343--31378414 Score: 53
Period size: 13 Copynumber: 5.5 Consensus size: 13
31378333 TTTTGCTCGA
*
31378343 TTTTTTTTC-ACT
1 TTTTTTTTCGAAT
31378355 TTTTTTTT-GAATT
1 TTTTTTTTCGAA-T
*
31378368 TTTTTTTTCAATCAATT
1 TTTTTTTTC---GAA-T
31378385 TTTTTTTTCGAAT
1 TTTTTTTTCGAAT
31378398 TTTTTTTT-G-AT
1 TTTTTTTTCGAAT
31378409 TTTTTT
1 TTTTTT
31378415 GTTACTTCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
11 8 0.16
12 10 0.20
13 18 0.35
14 2 0.04
17 13 0.25
ACGTcount: A:0.14, C:0.07, G:0.04, T:0.75
Consensus pattern (13 bp):
TTTTTTTTCGAAT
Found at i:31380184 original size:17 final size:18
Alignment explanation
Indices: 31380152--31380188 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
31380142 TGTTGAGCTG
31380152 AACTTAATTAAATTAACT
1 AACTTAATTAAATTAACT
*
31380170 AACTT-ATTTAATTAACT
1 AACTTAATTAAATTAACT
31380187 AA
1 AA
31380189 GTTTATTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.41
Consensus pattern (18 bp):
AACTTAATTAAATTAACT
Found at i:31383819 original size:22 final size:22
Alignment explanation
Indices: 31383791--31383834 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
31383781 TTTTGAACCA
31383791 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
31383813 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
31383835 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:31385285 original size:15 final size:15
Alignment explanation
Indices: 31385265--31385298 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
31385255 GTTCAACGAA
*
31385265 GAGGCCAACGCAATC
1 GAGGCCAACGAAATC
31385280 GAGGCCAACGAAATC
1 GAGGCCAACGAAATC
31385295 GAGG
1 GAGG
31385299 GAGGTTCGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.26, G:0.32, T:0.06
Consensus pattern (15 bp):
GAGGCCAACGAAATC
Found at i:31386761 original size:20 final size:20
Alignment explanation
Indices: 31386736--31386778 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
31386726 AAAAGAAAAG
31386736 AAAGAAGAGAGATTGAGAGA
1 AAAGAAGAGAGATTGAGAGA
** *
31386756 AAAGAATCGAGATTGTGAGA
1 AAAGAAGAGAGATTGAGAGA
31386776 AAA
1 AAA
31386779 ACAAGAGCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.02, G:0.30, T:0.14
Consensus pattern (20 bp):
AAAGAAGAGAGATTGAGAGA
Found at i:31394721 original size:6 final size:5
Alignment explanation
Indices: 31394686--31394753 Score: 59
Period size: 5 Copynumber: 13.0 Consensus size: 5
31394676 ACATTCTTGT
* *
31394686 AAAGA AAAAA CAAAGA AAAGA AAAGAA AAAGTA AAAGA AGA-A AAAGA
1 AAAGA AAAGA -AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA
31394733 AAATGA AATA-A AAAGA AAAGA
1 AAA-GA AA-AGA AAAGA AAAGA
31394754 GAGGCAAGAG
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
4 4 0.08
5 29 0.56
6 18 0.35
7 1 0.02
ACGTcount: A:0.78, C:0.01, G:0.16, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:31394726 original size:15 final size:14
Alignment explanation
Indices: 31394697--31394753 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
31394687 AAGAAAAAAC
31394697 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
31394713 AAAGTAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
31394728 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
31394744 AAAGAAAAGA
1 AAAGAAAAGA
31394754 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:31394854 original size:24 final size:24
Alignment explanation
Indices: 31394827--31394889 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
31394817 AAAACAAAAA
*
31394827 GAAAAAGAAAAAGAAAATGAGATT
1 GAAAAAGAAAAAGAAAAAGAGATT
* * *
31394851 GAAAAAGAGAATGAAAAAGAGTTT
1 GAAAAAGAAAAAGAAAAAGAGATT
* *
31394875 GAGAGAGAAAAAGAA
1 GAAAAAGAAAAAGAA
31394890 TGTGAACAAG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.63, C:0.00, G:0.25, T:0.11
Consensus pattern (24 bp):
GAAAAAGAAAAAGAAAAAGAGATT
Found at i:31394856 original size:13 final size:12
Alignment explanation
Indices: 31394827--31394871 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
31394817 AAAACAAAAA
* *
31394827 GAAAAAGAAAAA
1 GAAAAAGAGAAT
* *
31394839 GAAAATGAGATT
1 GAAAAAGAGAAT
31394851 GAAAAAGAGAAT
1 GAAAAAGAGAAT
31394863 GAAAAAGAG
1 GAAAAAGAG
31394872 TTTGAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (12 bp):
GAAAAAGAGAAT
Found at i:31395319 original size:15 final size:15
Alignment explanation
Indices: 31395299--31395329 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
31395289 GTTAACGATT
31395299 TTGTTTCAAAAGATG
1 TTGTTTCAAAAGATG
31395314 TTGTTTCAAAAGATG
1 TTGTTTCAAAAGATG
31395329 T
1 T
31395330 CATGAAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (15 bp):
TTGTTTCAAAAGATG
Found at i:31398752 original size:953 final size:953
Alignment explanation
Indices: 31396906--31398814 Score: 3818
Period size: 953 Copynumber: 2.0 Consensus size: 953
31396896 TGAATGGGAA
31396906 GATTCATGCACGACCTGGTTCAATGCTTGGAGGGAATTAAGTTCATATACATGGGAGGTTAATTA
1 GATTCATGCACGACCTGGTTCAATGCTTGGAGGGAATTAAGTTCATATACATGGGAGGTTAATTA
31396971 CATGCATGTGGATTAAGAAGATACATTCACTTTGGACGGCACACATGCATGAATGAAGGCATTTA
66 CATGCATGTGGATTAAGAAGATACATTCACTTTGGACGGCACACATGCATGAATGAAGGCATTTA
31397036 TTGCATGTTCATGTACGGCCAGATTCAAGCTCCCTTCTAGTTCATGCATGGCCGAATGTATGTGG
131 TTGCATGTTCATGTACGGCCAGATTCAAGCTCCCTTCTAGTTCATGCATGGCCGAATGTATGTGG
31397101 GTGAAATACATGAATTGTTTACTGTCCAATTGACTTCCCTAGGTGTCTATTCGGCCAAGAGACAC
196 GTGAAATACATGAATTGTTTACTGTCCAATTGACTTCCCTAGGTGTCTATTCGGCCAAGAGACAC
31397166 TTTTTGAATGATTCATTCATCCCATGGCCGAATTTAGGCAAGCTATTGAGTTCCCAAGACATCAC
261 TTTTTGAATGATTCATTCATCCCATGGCCGAATTTAGGCAAGCTATTGAGTTCCCAAGACATCAC
31397231 ATTCATCCAAGATGCTTTGCTTACACATGAAGCTGTCCAATGGAGTTCCCACTAGCCGAATTTAG
326 ATTCATCCAAGATGCTTTGCTTACACATGAAGCTGTCCAATGGAGTTCCCACTAGCCGAATTTAG
31397296 TCCTAGCTAATTAAAGACTTGTTCTAGATTATTCTAGTGCATTCATAGCTGAATTTATTTAGTCT
391 TCCTAGCTAATTAAAGACTTGTTCTAGATTATTCTAGTGCATTCATAGCTGAATTTATTTAGTCT
31397361 TTAAAGCTATTAGTTTGTCCATTCGGCTACTACTTGTTAGCCTATAAATAGTTTGCACATTTCAT
456 TTAAAGCTATTAGTTTGTCCATTCGGCTACTACTTGTTAGCCTATAAATAGTTTGCACATTTCAT
31397426 TGTAAAGGGACTTTTTGCCAAAATTGTTAATGAACATTTGTTCTTGTGAGGTTGCTTCCTCTCAT
521 TGTAAAGGGACTTTTTGCCAAAATTGTTAATGAACATTTGTTCTTGTGAGGTTGCTTCCTCTCAT
31397491 ATCTCATACAAGTTTCGAAAGACTTATCTGACTTGTGCTAGTGGCGTCAATCGTCTTGTTTGAAC
586 ATCTCATACAAGTTTCGAAAGACTTATCTGACTTGTGCTAGTGGCGTCAATCGTCTTGTTTGAAC
31397556 TTATCACCAATCTTGGTGTGGCGTTCACCTATCCATCTATCCATCTTTTCACCTTAACAATATAG
651 TTATCACCAATCTTGGTGTGGCGTTCACCTATCCATCTATCCATCTTTTCACCTTAACAATATAG
31397621 GAACCGGGGTGACACTTCTTAGTGTTGAATCATTCCTGACGTTAAGTTCGTTTTCCATTCCCACC
716 GAACCGGGGTGACACTTCTTAGTGTTGAATCATTCCTGACGTTAAGTTCGTTTTCCATTCCCACC
31397686 CTTCGAATTATTTTCTTGTTATTCCAAACCGAGCCATTTAACCAGCATCCATCTTTGCTACTAAA
781 CTTCGAATTATTTTCTTGTTATTCCAAACCGAGCCATTTAACCAGCATCCATCTTTGCTACTAAA
31397751 TCGAACCTATTACTAAATTCACCCTACTTTGAAACCTTCCGTTTACCCGTATCTTTTCATTCACT
846 TCGAACCTATTACTAAATTCACCCTACTTTGAAACCTTCCGTTTACCCGTATCTTTTCATTCACT
31397816 TCTAGTTCTAAAACCCGAAGCACGAATGACTCTCTCGAACGAC
911 TCTAGTTCTAAAACCCGAAGCACGAATGACTCTCTCGAACGAC
31397859 GATTCATGCACGACCTGGTTCAATGCTTGGAGGGAATTAAGTTCATATACATGGGAGGTTAATTA
1 GATTCATGCACGACCTGGTTCAATGCTTGGAGGGAATTAAGTTCATATACATGGGAGGTTAATTA
31397924 CATGCATGTGGATTAAGAAGATACATTCACTTTGGACGGCACACATGCATGAATGAAGGCATTTA
66 CATGCATGTGGATTAAGAAGATACATTCACTTTGGACGGCACACATGCATGAATGAAGGCATTTA
31397989 TTGCATGTTCATGTACGGCCAGATTCAAGCTCCCTTCTAGTTCATGCATGGCCGAATGTATGTGG
131 TTGCATGTTCATGTACGGCCAGATTCAAGCTCCCTTCTAGTTCATGCATGGCCGAATGTATGTGG
31398054 GTGAAATACATGAATTGTTTACTGTCCAATTGACTTCCCTAGGTGTCTATTCGGCCAAGAGACAC
196 GTGAAATACATGAATTGTTTACTGTCCAATTGACTTCCCTAGGTGTCTATTCGGCCAAGAGACAC
31398119 TTTTTGAATGATTCATTCATCCCATGGCCGAATTTAGGCAAGCTATTGAGTTCCCAAGACATCAC
261 TTTTTGAATGATTCATTCATCCCATGGCCGAATTTAGGCAAGCTATTGAGTTCCCAAGACATCAC
31398184 ATTCATCCAAGATGCTTTGCTTACACATGAAGCTGTCCAATGGAGTTCCCACTAGCCGAATTTAG
326 ATTCATCCAAGATGCTTTGCTTACACATGAAGCTGTCCAATGGAGTTCCCACTAGCCGAATTTAG
31398249 TCCTAGCTAATTAAAGACTTGTTCTAGATTATTCTAGTGCATTCATAGCTGAATTTATTTAGTCT
391 TCCTAGCTAATTAAAGACTTGTTCTAGATTATTCTAGTGCATTCATAGCTGAATTTATTTAGTCT
31398314 TTAAAGCTATTAGTTTGTCCATTCGGCTACTACTTGTTAGCCTATAAATAGTTTGCACATTTCAT
456 TTAAAGCTATTAGTTTGTCCATTCGGCTACTACTTGTTAGCCTATAAATAGTTTGCACATTTCAT
31398379 TGTAAAGGGACTTTTTGCCAAAATTGTTAATGAACATTTGTTCTTGTGAGGTTGCTTCCTCTCAT
521 TGTAAAGGGACTTTTTGCCAAAATTGTTAATGAACATTTGTTCTTGTGAGGTTGCTTCCTCTCAT
31398444 ATCTCATACAAGTTTCGAAAGACTTATCTGACTTGTGCTAGTGGCGTCAATCGTCTTGTTTGAAC
586 ATCTCATACAAGTTTCGAAAGACTTATCTGACTTGTGCTAGTGGCGTCAATCGTCTTGTTTGAAC
31398509 TTATCACCAATCTTGGTGTGGCGTTCACCTATCCATCTATCCATCTTTTCACCTTAACAATATAG
651 TTATCACCAATCTTGGTGTGGCGTTCACCTATCCATCTATCCATCTTTTCACCTTAACAATATAG
31398574 GAACCGGGGTGACACTTCTTAGTGTTGAATCATTCCTGACGTTAAGTTCGTTTTCCATTCCCACC
716 GAACCGGGGTGACACTTCTTAGTGTTGAATCATTCCTGACGTTAAGTTCGTTTTCCATTCCCACC
31398639 CTTCGAATTATTTTCTTGTTATTCCAAACCGAGCCATTTAACCAGCATCCATCTTTGCTACTAAA
781 CTTCGAATTATTTTCTTGTTATTCCAAACCGAGCCATTTAACCAGCATCCATCTTTGCTACTAAA
31398704 TCGAACCTATTACTAAATTCACCCTACTTTGAAACCTTCCGTTTACCCGTATCTTTTCATTCACT
846 TCGAACCTATTACTAAATTCACCCTACTTTGAAACCTTCCGTTTACCCGTATCTTTTCATTCACT
31398769 TCTAGTTCTAAAACCCGAAGCACGAATGACTCTCTCGAACGAC
911 TCTAGTTCTAAAACCCGAAGCACGAATGACTCTCTCGAACGAC
31398812 GAT
1 GAT
31398815 CAGGCAACTA
Statistics
Matches: 956, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
953 956 1.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (953 bp):
GATTCATGCACGACCTGGTTCAATGCTTGGAGGGAATTAAGTTCATATACATGGGAGGTTAATTA
CATGCATGTGGATTAAGAAGATACATTCACTTTGGACGGCACACATGCATGAATGAAGGCATTTA
TTGCATGTTCATGTACGGCCAGATTCAAGCTCCCTTCTAGTTCATGCATGGCCGAATGTATGTGG
GTGAAATACATGAATTGTTTACTGTCCAATTGACTTCCCTAGGTGTCTATTCGGCCAAGAGACAC
TTTTTGAATGATTCATTCATCCCATGGCCGAATTTAGGCAAGCTATTGAGTTCCCAAGACATCAC
ATTCATCCAAGATGCTTTGCTTACACATGAAGCTGTCCAATGGAGTTCCCACTAGCCGAATTTAG
TCCTAGCTAATTAAAGACTTGTTCTAGATTATTCTAGTGCATTCATAGCTGAATTTATTTAGTCT
TTAAAGCTATTAGTTTGTCCATTCGGCTACTACTTGTTAGCCTATAAATAGTTTGCACATTTCAT
TGTAAAGGGACTTTTTGCCAAAATTGTTAATGAACATTTGTTCTTGTGAGGTTGCTTCCTCTCAT
ATCTCATACAAGTTTCGAAAGACTTATCTGACTTGTGCTAGTGGCGTCAATCGTCTTGTTTGAAC
TTATCACCAATCTTGGTGTGGCGTTCACCTATCCATCTATCCATCTTTTCACCTTAACAATATAG
GAACCGGGGTGACACTTCTTAGTGTTGAATCATTCCTGACGTTAAGTTCGTTTTCCATTCCCACC
CTTCGAATTATTTTCTTGTTATTCCAAACCGAGCCATTTAACCAGCATCCATCTTTGCTACTAAA
TCGAACCTATTACTAAATTCACCCTACTTTGAAACCTTCCGTTTACCCGTATCTTTTCATTCACT
TCTAGTTCTAAAACCCGAAGCACGAATGACTCTCTCGAACGAC
Found at i:31399904 original size:21 final size:20
Alignment explanation
Indices: 31399878--31399945 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 20
31399868 ACATTCTTGT
31399878 AAAGAAAAAACAAAGAAAAGA
1 AAAGAAAAAACAAA-AAAAGA
* *
31399899 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAACAAAAAAAG-A
31399920 AAAGAAAAAGA-AATAAAAAGA
1 AAAGAAAAA-ACAA-AAAAAGA
31399941 AAAGA
1 AAAGA
31399946 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 4 0.10
21 31 0.77
22 5 0.12
ACGTcount: A:0.79, C:0.03, G:0.16, T:0.01
Consensus pattern (20 bp):
AAAGAAAAAACAAAAAAAGA
Found at i:31399913 original size:6 final size:5
Alignment explanation
Indices: 31399878--31399945 Score: 59
Period size: 5 Copynumber: 13.0 Consensus size: 5
31399868 ACATTCTTGT
* *
31399878 AAAGA AAAAA CAAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGAA
1 AAAGA AAAGA -AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAG-A
31399926 AAAGA AATA-A AAAGA AAAGA
1 AAAGA AA-AGA AAAGA AAAGA
31399946 GAGGCAAGAG
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
4 4 0.08
5 28 0.54
6 20 0.38
ACGTcount: A:0.79, C:0.03, G:0.16, T:0.01
Consensus pattern (5 bp):
AAAGA
Found at i:31400046 original size:18 final size:18
Alignment explanation
Indices: 31400005--31400048 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
31399995 GAAAAAGCCT
31400005 TTGAAAAATAAAAAGAAA
1 TTGAAAAATAAAAAGAAA
** * *
31400023 AAGAAAAATAAAATGAGA
1 TTGAAAAATAAAAAGAAA
31400041 TTGAAAAA
1 TTGAAAAA
31400049 GAGAATGAAA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.14, T:0.16
Consensus pattern (18 bp):
TTGAAAAATAAAAAGAAA
Found at i:31400059 original size:24 final size:24
Alignment explanation
Indices: 31400019--31400078 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
31400009 AAAATAAAAA
*
31400019 GAAAAAGAAAAATAAAATGAGATT
1 GAAAAAGAAAAATAAAAAGAGATT
* *
31400043 GAAAAAG-AGAATGAAAAAGAGTTT
1 GAAAAAGAAAAAT-AAAAAGAGATT
* *
31400067 GAGAGAGAAAAA
1 GAAAAAGAAAAA
31400079 GAATGTGAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
23 4 0.14
24 21 0.75
25 3 0.11
ACGTcount: A:0.63, C:0.00, G:0.23, T:0.13
Consensus pattern (24 bp):
GAAAAAGAAAAATAAAAAGAGATT
Found at i:31401721 original size:20 final size:20
Alignment explanation
Indices: 31401698--31401745 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
31401688 AGCTCCGTCC
31401698 AGCTCAACTCAGCTCATTTA
1 AGCTCAACTCAGCTCATTTA
*** * *
31401718 AGCTCGTTTCAGCTCGTTTG
1 AGCTCAACTCAGCTCATTTA
31401738 AGCTCAAC
1 AGCTCAAC
31401746 CGAGCTTACT
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTA
Found at i:31411194 original size:22 final size:22
Alignment explanation
Indices: 31411164--31411207 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
31411154 TTTGGTATTT
31411164 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
31411186 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
31411208 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:31415180 original size:17 final size:17
Alignment explanation
Indices: 31415155--31415208 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
31415145 TCTCTTTTCA
*
31415155 TTCTCTTTTTTTGAATT
1 TTCTTTTTTTTTGAATT
* *
31415172 TTCTTTTTTTTTCATTT
1 TTCTTTTTTTTTGAATT
* *
31415189 TTCTTTTCTTTTGTATT
1 TTCTTTTTTTTTGAATT
31415206 TTC
1 TTC
31415209 GCTCTTTTCT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.07, C:0.13, G:0.04, T:0.76
Consensus pattern (17 bp):
TTCTTTTTTTTTGAATT
Found at i:31421120 original size:15 final size:16
Alignment explanation
Indices: 31421081--31421121 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
31421071 AACAACACTC
31421081 CTTTCTTTTTCACTTT
1 CTTTCTTTTTCACTTT
* *
31421097 C-ATCCTTTTCA-TTT
1 CTTTCTTTTTCACTTT
31421111 CTTTCTTTTTC
1 CTTTCTTTTTC
31421122 CAACTCATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 3
0.74 0.15 0.11
Matches are distributed among these distances:
14 4 0.20
15 15 0.75
16 1 0.05
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.66
Consensus pattern (16 bp):
CTTTCTTTTTCACTTT
Found at i:31421316 original size:17 final size:15
Alignment explanation
Indices: 31421279--31421317 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 15
31421269 TATCTCCCAC
31421279 TCATCTTCTTTTTCTT
1 TCAT-TTCTTTTTCTT
31421295 TCATTTCTTTTTCATGT
1 TCATTTCTTTTTC-T-T
31421312 TCATTT
1 TCATTT
31421318 TCTTGCTCGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.10, C:0.21, G:0.03, T:0.67
Consensus pattern (15 bp):
TCATTTCTTTTTCTT
Found at i:31422255 original size:26 final size:28
Alignment explanation
Indices: 31422214--31422280 Score: 95
Period size: 27 Copynumber: 2.4 Consensus size: 28
31422204 TTTCAATCAC
31422214 TCTTTTTTTTTCAATT-TCG-ATTTTTTT
1 TCTTTTTTTTTCAATTCT-GAATTTTTTT
31422241 TCTTTTTTTTT-AATTCTGAATTTTTTT
1 TCTTTTTTTTTCAATTCTGAATTTTTTT
31422268 TCTTCTTTTTTTC
1 TCTT-TTTTTTTC
31422281 TTCAATACTA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
26 5 0.14
27 24 0.67
28 7 0.19
ACGTcount: A:0.10, C:0.12, G:0.03, T:0.75
Consensus pattern (28 bp):
TCTTTTTTTTTCAATTCTGAATTTTTTT
Found at i:31427734 original size:19 final size:19
Alignment explanation
Indices: 31427710--31427749 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
31427700 AGCTCCCATG
31427710 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
31427729 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
31427748 TA
1 TA
31427750 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:31430558 original size:22 final size:22
Alignment explanation
Indices: 31430528--31430571 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
31430518 TTTGGTATTT
31430528 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
31430550 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
31430572 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:31435688 original size:20 final size:20
Alignment explanation
Indices: 31435642--31435688 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
31435632 AGCTCGTTTC
*
31435642 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
31435662 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
31435682 CAGCTCA
1 CAGCTCA
31435689 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:31436088 original size:22 final size:22
Alignment explanation
Indices: 31436058--31436101 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
31436048 TTTGGTATTT
31436058 GGGAATTGGTACAAAATGGTAA
1 GGGAATTGGTACAAAATGGTAA
* *
31436080 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACAAAATGGTAA
31436102 TGGTTCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.34, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACAAAATGGTAA
Found at i:31438857 original size:11 final size:12
Alignment explanation
Indices: 31438841--31438925 Score: 50
Period size: 11 Copynumber: 6.7 Consensus size: 12
31438831 TTGGAGTAAC
31438841 AAAAAAAATC-A
1 AAAAAAAATCGA
*
31438852 AAAAAAATTCGA
1 AAAAAAAATCGA
*
31438864 AAAAAAAATTTGA
1 AAAAAAAA-TCGA
*
31438877 TTGAAAAAAAATTCAA
1 ---AAAAAAAA-TCGA
31438893 AAAAAAAAGT-G-
1 AAAAAAAA-TCGA
31438904 AAAAAAAATCGA
1 AAAAAAAATCGA
31438916 GCAAAAAAAA
1 --AAAAAAAA
31438926 GAAAAGAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
10 1 0.02
11 18 0.31
12 8 0.14
13 12 0.21
14 8 0.14
16 11 0.19
ACGTcount: A:0.72, C:0.06, G:0.08, T:0.14
Consensus pattern (12 bp):
AAAAAAAATCGA
Found at i:31438867 original size:13 final size:13
Alignment explanation
Indices: 31438851--31438911 Score: 61
Period size: 13 Copynumber: 4.5 Consensus size: 13
31438841 AAAAAAAATC
31438851 AAAAAAAATTCGA
1 AAAAAAAATTCGA
*
31438864 AAAAAAAATTTGA
1 AAAAAAAATTCGA
*
31438877 TTGAAAAAAAATTCAA
1 ---AAAAAAAATTCGA
*
31438893 AAAAAAAAGT-GA
1 AAAAAAAATTCGA
31438905 AAAAAAA
1 AAAAAAA
31438912 TCGAGCAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
12 8 0.20
13 21 0.52
16 11 0.28
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.16
Consensus pattern (13 bp):
AAAAAAAATTCGA
Found at i:31438923 original size:29 final size:28
Alignment explanation
Indices: 31438890--31438954 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
31438880 AAAAAAAATT
**
31438890 CAAAAAAAA-AAGTGAAAAAAAA-TCGAG
1 CAAAAAAAAGAAAAGAAAAAAAAGT-GAG
31438917 CAAAAAAAAGAAAAGAAAAAAAAGGTGAG
1 CAAAAAAAAGAAAAGAAAAAAAA-GTGAG
31438946 CAAAAAAAA
1 CAAAAAAAA
31438955 TCAAGTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 9 0.27
28 11 0.33
29 12 0.36
30 1 0.03
ACGTcount: A:0.74, C:0.06, G:0.15, T:0.05
Consensus pattern (28 bp):
CAAAAAAAAGAAAAGAAAAAAAAGTGAG
Found at i:31441579 original size:12 final size:12
Alignment explanation
Indices: 31441562--31441608 Score: 67
Period size: 12 Copynumber: 3.7 Consensus size: 12
31441552 TCGGTATTGT
31441562 AAAAAAAATTCA
1 AAAAAAAATTCA
31441574 AAAAAAAATTCGAAA
1 AAAAAAAATTC---A
31441589 AAAAAAAATTCA
1 AAAAAAAATTCA
31441601 AAAAAAAA
1 AAAAAAAA
31441609 CTTTGTATTC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
12 20 0.62
15 12 0.38
ACGTcount: A:0.79, C:0.06, G:0.02, T:0.13
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:31441696 original size:25 final size:27
Alignment explanation
Indices: 31441654--31441714 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
31441644 TATTGAAGAA
* *
31441654 AAAAAAGAAGAAATAAAATTCGGAATT-
1 AAAAAA-AAGAAATAAAAATCGAAATTG
31441681 AAAAAAAAGAAA-AAAAATCGAAATTG
1 AAAAAAAAGAAATAAAAATCGAAATTG
31441707 AAAAAAAA
1 AAAAAAAA
31441715 AGAGTGATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 11 0.35
26 14 0.45
27 6 0.19
ACGTcount: A:0.72, C:0.03, G:0.11, T:0.13
Consensus pattern (27 bp):
AAAAAAAAGAAATAAAAATCGAAATTG
Found at i:31442637 original size:17 final size:15
Alignment explanation
Indices: 31442617--31442655 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 15
31442607 GCGAGCGAGA
31442617 AAATGAACATGAAAAAG
1 AAATGAA-A-GAAAAAG
31442634 AAATGAAAGAAAAAG
1 AAATGAAAGAAAAAG
31442649 AAGATGA
1 AA-ATGA
31442656 GTGGGACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.67, C:0.03, G:0.21, T:0.10
Consensus pattern (15 bp):
AAATGAAAGAAAAAG
Found at i:31443614 original size:4 final size:4
Alignment explanation
Indices: 31443605--31443632 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
31443595 TTAAACTAAG
31443605 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
31443633 AATAAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:31445037 original size:23 final size:22
Alignment explanation
Indices: 31444985--31445037 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
31444975 TCCACGTCTT
*
31444985 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
31445007 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
31445030 TTTCTTTT
1 TTTCTTTT
31445038 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:31453888 original size:48 final size:47
Alignment explanation
Indices: 31453809--31453914 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
31453799 AAGTGTCATG
*
31453809 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
31453857 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
31453905 GAAAAAGAAA
1 GAAAAAGAAA
31453915 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:31455631 original size:20 final size:20
Alignment explanation
Indices: 31455585--31455631 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
31455575 AGCTCGTTTC
31455585 CAGCTCACTCAAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
31455605 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
31455625 CAGCTCA
1 CAGCTCA
31455632 ATCTTAACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.36, G:0.11, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:31460767 original size:30 final size:30
Alignment explanation
Indices: 31460682--31460778 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
31460672 TAAACTAAAA
* *
31460682 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * *
31460712 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
*
31460742 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
31460771 ATGAGCTA
1 -TGAGCTA
31460779 GGAGTGAGCT
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:31465964 original size:15 final size:15
Alignment explanation
Indices: 31465944--31465991 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
31465934 TCAAAGATGG
31465944 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
31465959 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
31465974 -TTTATGGATATAAA
1 GTTTATGGATATGAA
31465988 GTTT
1 GTTT
31465992 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:31465971 original size:29 final size:29
Alignment explanation
Indices: 31465938--31465997 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
31465928 AAGGATTCAA
* *
31465938 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGATTTATGGATATAAAGTTTATGT
*
31465967 AGATGGATTTATGGATATAAAGTTTTTGT
1 AGATGGATTTATGGATATAAAGTTTATGT
31465996 AG
1 AG
31465998 GTTTGGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (29 bp):
AGATGGATTTATGGATATAAAGTTTATGT
Found at i:31467017 original size:14 final size:14
Alignment explanation
Indices: 31466975--31467019 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
31466965 TTAAAGAAGC
31466975 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
31466989 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
31467002 AACTCATTTAATTA
1 AACTCATTAAATTA
31467016 AACT
1 AACT
31467020 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:31468128 original size:28 final size:28
Alignment explanation
Indices: 31468088--31468142 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
31468078 AATAAGGAAA
31468088 CAATAGGAGAAGGCAATGATTTTTCTAC
1 CAATAGGAGAAGGCAATGATTTTTCTAC
31468116 CAATAGGAGAAGGCAATGATTTTTCTA
1 CAATAGGAGAAGGCAATGATTTTTCTA
31468143 TCTCGTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (28 bp):
CAATAGGAGAAGGCAATGATTTTTCTAC
Found at i:31473969 original size:19 final size:19
Alignment explanation
Indices: 31473945--31473982 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
31473935 TTACTACAGC
31473945 AATTTAAGTTATCTTAGTT
1 AATTTAAGTTATCTTAGTT
* *
31473964 AATTTAATTTGTCTTAGTT
1 AATTTAAGTTATCTTAGTT
31473983 TAATGCATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.05, G:0.11, T:0.55
Consensus pattern (19 bp):
AATTTAAGTTATCTTAGTT
Found at i:31479765 original size:23 final size:22
Alignment explanation
Indices: 31479713--31479765 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
31479703 TCCACGTCTT
*
31479713 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
31479735 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
31479758 TTTCTTTT
1 TTTCTTTT
31479766 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:31482639 original size:24 final size:24
Alignment explanation
Indices: 31482612--31482663 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
31482602 CCTTTATTTG
* *
31482612 TTTCAAT-TTTTTTGTCTTTTTCTT
1 TTTCAATCTTTTTT-TCTTGTACTT
*
31482636 TTTCACTCTTTTTTTCTTGTACTT
1 TTTCAATCTTTTTTTCTTGTACTT
31482660 TTTC
1 TTTC
31482664 TTTCAATTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.08, C:0.17, G:0.04, T:0.71
Consensus pattern (24 bp):
TTTCAATCTTTTTTTCTTGTACTT
Found at i:31484721 original size:30 final size:30
Alignment explanation
Indices: 31484687--31484768 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
31484677 TAAACTAAAA
* *
31484687 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGC
* * * * * *
31484717 TGAGCTGAGATTAAACTCCTAAGCTGAAGC
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGC
*
31484747 TGAGCTAAGGTTTAGCTCGTGA
1 TGAGCTAAGATTTAGCTCGTGA
31484769 ACTGAATATG
Statistics
Matches: 38, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGC
Found at i:31486521 original size:12 final size:13
Alignment explanation
Indices: 31486504--31486536 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
31486494 TTGTAGATTC
31486504 AAAAAAAATCGA-
1 AAAAAAAATCGAG
31486516 AAAAAAAATCGAG
1 AAAAAAAATCGAG
31486529 AAAAAAAA
1 AAAAAAAA
31486537 ATTTGCATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.79, C:0.06, G:0.09, T:0.06
Consensus pattern (13 bp):
AAAAAAAATCGAG
Found at i:31493686 original size:22 final size:22
Alignment explanation
Indices: 31493658--31493701 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
31493648 TTTTGAACCA
31493658 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
31493680 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
31493702 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Done.