Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 104 of 253
Found at i:32392910 original size:10 final size:11
Alignment explanation
Indices: 32392892--32392922 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
32392882 TTTCTTCACG
32392892 AATTTTTTTCA
1 AATTTTTTTCA
32392903 AATTTTTTTC-
1 AATTTTTTTCA
32392913 AATTTTTTTC
1 AATTTTTTTC
32392923 TAAAGATACG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.68
Consensus pattern (11 bp):
AATTTTTTTCA
Found at i:32402384 original size:37 final size:37
Alignment explanation
Indices: 32402334--32402412 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32402324 TTATTACGAA
* * *
32402334 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32402371 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32402408 GTCTT
1 GTCTT
32402413 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32402609 original size:47 final size:47
Alignment explanation
Indices: 32402531--32402867 Score: 494
Period size: 47 Copynumber: 7.1 Consensus size: 47
32402521 CCCTTCGGGA
* * * * * * *
32402531 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
32402578 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
*
32402625 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32402674 CTTATCACGTATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
32402721 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
32402768 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32402817 CTTATCACATATATACACTTTCACGTTCATCCCATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
32402864 CTTA
1 CTTA
32402868 CTATCATTTC
Statistics
Matches: 266, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 176 0.66
49 90 0.34
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32402695 original size:96 final size:96
Alignment explanation
Indices: 32402531--32402867 Score: 497
Period size: 96 Copynumber: 3.6 Consensus size: 96
32402521 CCCTTCGGGA
* * * * * * * *
32402531 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32402594 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
32402625 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
32402690 ACTTTCACATTCATCACATCGACCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
32402721 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
32402784 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32402817 CTTATCAC--ATATATACACTTTCACGTTCATCCCATCGGCCATTAGGCCTTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
32402868 CTATCATTTC
Statistics
Matches: 221, Mismatches: 16, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
94 54 0.24
95 1 0.00
96 166 0.75
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32402789 original size:143 final size:143
Alignment explanation
Indices: 32402531--32402867 Score: 557
Period size: 143 Copynumber: 2.4 Consensus size: 143
32402521 CCCTTCGGGA
* * * * * * * *
32402531 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
32402596 TTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACA
32402661 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
32402674 CTTATCACGTATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
32402739 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACA
32402804 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* *
32402817 CTTATCACATATATACACTTTCACGTTCATCCCATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
32402868 CTATCATTTC
Statistics
Matches: 179, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
143 179 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
TTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:32407905 original size:30 final size:29
Alignment explanation
Indices: 32407871--32407937 Score: 98
Period size: 30 Copynumber: 2.3 Consensus size: 29
32407861 ATGAATCGGA
*
32407871 AGCTTTGGCACTAAGTGTGTGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
*
32407901 AGCTTTAGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
*
32407930 GGCTTTGG
1 AGCTTTGG
32407938 TTACTTGAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
29 10 0.30
30 23 0.70
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:32420859 original size:15 final size:15
Alignment explanation
Indices: 32420839--32420868 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32420829 CTTTGTATTT
32420839 GGTAATCATTAAGTA
1 GGTAATCATTAAGTA
32420854 GGTAATCATTAAGTA
1 GGTAATCATTAAGTA
32420869 TAAGTGATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (15 bp):
GGTAATCATTAAGTA
Found at i:32433541 original size:27 final size:27
Alignment explanation
Indices: 32433503--32433554 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
32433493 TGTTTGTAGG
* *
32433503 TACATGCATGGACGGCATTGAAGATAA
1 TACATGCATGGACGACAATGAAGATAA
*
32433530 TACATGCGTGGACGACAATGAAGAT
1 TACATGCATGGACGACAATGAAGAT
32433555 GCTTCAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (27 bp):
TACATGCATGGACGACAATGAAGATAA
Found at i:32437255 original size:79 final size:81
Alignment explanation
Indices: 32437153--32437337 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
32437143 GCTCCTCGTT
* *
32437153 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32437216 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
32437233 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
32437297 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
32437313 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32437338 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:32437337 original size:40 final size:40
Alignment explanation
Indices: 32437153--32437337 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
32437143 GCTCCTCGTT
* *
32437153 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32437193 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
32437233 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
32437272 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
32437313 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32437338 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:32444992 original size:79 final size:81
Alignment explanation
Indices: 32444890--32445074 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
32444880 GCTCCTCGTT
* *
32444890 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32444953 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
32444970 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
32445034 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
32445050 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32445075 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:32445074 original size:40 final size:40
Alignment explanation
Indices: 32444890--32445074 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
32444880 GCTCCTCGTT
* *
32444890 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32444930 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
32444970 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
32445009 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
32445050 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32445075 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:32456676 original size:28 final size:27
Alignment explanation
Indices: 32456560--32456688 Score: 118
Period size: 28 Copynumber: 4.6 Consensus size: 27
32456550 TAATTATATG
**
32456560 TGGCACTTAACGTGCGAAGTATCAGGGA
1 TGGCACTTAGTGTGCGAAGTATC-GGGA
*
32456588 TGGCACTTAGTGTGCGAAGTAACGAGGA
1 TGGCACTTAGTGTGCGAAGTATCG-GGA
** * *
32456616 TGGCACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAT-CGGGA
*
32456644 CGGCACTTAGTGTGC-AAGGTATCGGGTA
1 TGGCACTTAGTGTGCGAA-GTATCGGG-A
32456672 TGGCA-TCTAGTGTGCGA
1 TGGCACT-TAGTGTGCGA
32456689 TACATTGAAT
Statistics
Matches: 81, Mismatches: 14, Indels: 11
0.76 0.13 0.10
Matches are distributed among these distances:
27 6 0.07
28 73 0.90
29 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (27 bp):
TGGCACTTAGTGTGCGAAGTATCGGGA
Found at i:32456802 original size:32 final size:32
Alignment explanation
Indices: 32456751--32456834 Score: 123
Period size: 32 Copynumber: 2.6 Consensus size: 32
32456741 TACGAGATGA
* *
32456751 TACAGGTATCTACGAAAATTGGTACAATATGG
1 TACAGGTATGTACGAAAATTGGTACAATATAG
* *
32456783 TACAGGTATGTACGGAAATTTGTACAATATAG
1 TACAGGTATGTACGAAAATTGGTACAATATAG
*
32456815 TACATGTATGTACGAAAATT
1 TACAGGTATGTACGAAAATT
32456835 CAATTGAGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (32 bp):
TACAGGTATGTACGAAAATTGGTACAATATAG
Found at i:32457460 original size:69 final size:70
Alignment explanation
Indices: 32457349--32457491 Score: 252
Period size: 69 Copynumber: 2.1 Consensus size: 70
32457339 GTTTCAGAAG
32457349 TTTGCTCGGGTTGGAAGTCAACAGAGATCACATCACACTATCCTACTATTGATTTTTGGTATTTT
1 TTTGCTCGGGTTGGAAGTCAACAGAGATCACATCACACTATCCTACTATTGATTTTTGGTATTTT
32457414 TACA-
66 TACAC
* * *
32457418 TTTGCTCTGGTTGGAAGTCAACAGAGATCGCATCACACTATCCTGCTATTGATTTTTGGTATTTT
1 TTTGCTCGGGTTGGAAGTCAACAGAGATCACATCACACTATCCTACTATTGATTTTTGGTATTTT
32457483 TACAC
66 TACAC
32457488 TTTG
1 TTTG
32457492 GGGCTTGGTA
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
69 66 0.94
70 4 0.06
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (70 bp):
TTTGCTCGGGTTGGAAGTCAACAGAGATCACATCACACTATCCTACTATTGATTTTTGGTATTTT
TACAC
Found at i:32464349 original size:30 final size:30
Alignment explanation
Indices: 32464315--32464411 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
32464305 TAAACTAAAA
32464315 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
32464345 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
32464375 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
32464405 TGAGCTA
1 TGAGCTA
32464412 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:32476558 original size:47 final size:47
Alignment explanation
Indices: 32476507--32477252 Score: 1305
Period size: 47 Copynumber: 15.7 Consensus size: 47
32476497 TTAGGATTCT
* * *
32476507 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
32476554 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32476601 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32476648 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
32476697 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32476744 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32476791 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
32476840 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
32476887 ATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32476934 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32476981 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
32477030 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32477077 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32477124 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
32477171 ATGTGATGAATGTGAATGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
32477218 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
32477253 TCCCGAAGGG
Statistics
Matches: 675, Mismatches: 17, Indels: 14
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 533 0.79
49 141 0.21
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:32476582 original size:25 final size:25
Alignment explanation
Indices: 32476554--32476632 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
32476544 CTAATGGCCG
32476554 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
32476579 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
32476601 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
32476626 ATGTGAT
1 ATGTGAT
32476633 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:32476687 original size:143 final size:143
Alignment explanation
Indices: 32476528--32477252 Score: 1300
Period size: 143 Copynumber: 5.1 Consensus size: 143
32476518 GTGAACATGC
*
32476528 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
32476593 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32476658 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
32476671 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
32476736 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32476801 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
32476814 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
32476879 AATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32476944 TGTGAAAGTG--T
131 TGTGAAAGTGTAT
32476955 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
32477020 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
64 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32477085 AATGTGAAAGTG--T
129 AATGTGAAAGTGTAT
32477098 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * * * * * *
32477163 AATGGCCGATGTGATGAATGTGAATGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
32477228 TGTGAAAGTGTAT
131 TGTGAAAGTGTAT
32477241 A-A-ATGTGATAAG
1 ATATATGTGATAAG
32477253 TCCCGAAGGG
Statistics
Matches: 567, Mismatches: 11, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
141 143 0.25
142 1 0.00
143 423 0.75
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (143 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTAT
Found at i:32476790 original size:190 final size:189
Alignment explanation
Indices: 32476507--32477252 Score: 1309
Period size: 190 Copynumber: 3.9 Consensus size: 189
32476497 TTAGGATTCT
* * *
32476507 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
32476571 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAA
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAA
32476635 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
130 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
32476697 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
32476762 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
32476827 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
130 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
32476887 ATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
32476952 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAA
32477017 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
130 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32477077 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
32477142 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAATGTG-TATATATGTGACAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
* * * * * *
32477206 GCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
131 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
32477253 TCCCGAAGGG
Statistics
Matches: 539, Mismatches: 14, Indels: 8
0.96 0.02 0.01
Matches are distributed among these distances:
188 54 0.10
189 1 0.00
190 437 0.81
192 47 0.09
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (189 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:32477426 original size:37 final size:37
Alignment explanation
Indices: 32477370--32477448 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32477360 CCGAGCTCTA
* * *
32477370 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
32477407 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32477444 AAGAC
1 AAGAC
32477449 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32479143 original size:40 final size:40
Alignment explanation
Indices: 32478661--32479129 Score: 717
Period size: 40 Copynumber: 11.8 Consensus size: 40
32478651 GAGAATTGAG
*
32478661 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
32478701 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
32478741 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
32478781 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
32478821 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
32478861 AGTGATATATCTGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
32478901 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
32478941 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
32478981 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
32479021 AGTGATGTATCC-GGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
32479060 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
* * *
32479100 GGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAG
32479130 TAATCATGCT
Statistics
Matches: 404, Mismatches: 22, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
39 36 0.09
40 366 0.91
41 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:32489300 original size:14 final size:14
Alignment explanation
Indices: 32489281--32489321 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
32489271 GTAGAAAGAG
*
32489281 GGGTAGGAACGAAA
1 GGGTAGGAACAAAA
32489295 GGGTAGGAACAAAA
1 GGGTAGGAACAAAA
* *
32489309 GGATATGAACAAA
1 GGGTAGGAACAAA
32489322 TTGGTCGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.49, C:0.07, G:0.34, T:0.10
Consensus pattern (14 bp):
GGGTAGGAACAAAA
Found at i:32491050 original size:14 final size:14
Alignment explanation
Indices: 32491028--32491072 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
32491018 TTAAAGAAGC
32491028 AACTCATTAAATTA
1 AACTCATTAAATTA
*
32491042 AATTCATTAAA-TA
1 AACTCATTAAATTA
*
32491055 AACTCATTTAATTA
1 AACTCATTAAATTA
32491069 AACT
1 AACT
32491073 AAGATGAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:32493192 original size:14 final size:14
Alignment explanation
Indices: 32493150--32493194 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
32493140 TTAAAGAAGC
32493150 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
32493164 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
32493177 AACTCATTTAATTA
1 AACTCATTAAATTA
32493191 AACT
1 AACT
32493195 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:32505438 original size:17 final size:17
Alignment explanation
Indices: 32505411--32505445 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
32505401 TATGTTCAAA
32505411 TTTTCAGATTTTGTTTTT
1 TTTTCAGATTTT-TTTTT
32505429 TTTTCA-ATTTTTTTTT
1 TTTTCAGATTTTTTTTT
32505445 T
1 T
32505446 GAATTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 5 0.29
18 6 0.35
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.77
Consensus pattern (17 bp):
TTTTCAGATTTTTTTTT
Found at i:32505440 original size:13 final size:13
Alignment explanation
Indices: 32505424--32505468 Score: 81
Period size: 13 Copynumber: 3.5 Consensus size: 13
32505414 TCAGATTTTG
*
32505424 TTTTTTTTTCAAT
1 TTTTTTTTTGAAT
32505437 TTTTTTTTTGAAT
1 TTTTTTTTTGAAT
32505450 TTTTTTTTTGAAT
1 TTTTTTTTTGAAT
32505463 TTTTTT
1 TTTTTT
32505469 GAAACTTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.80
Consensus pattern (13 bp):
TTTTTTTTTGAAT
Found at i:32508341 original size:14 final size:14
Alignment explanation
Indices: 32508319--32508363 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
32508309 TTAAAGAAGC
32508319 AACTCATTAAATTA
1 AACTCATTAAATTA
*
32508333 AATTCATTAAA-TA
1 AACTCATTAAATTA
*
32508346 AACTCATTTAATTA
1 AACTCATTAAATTA
32508360 AACT
1 AACT
32508364 AAGATGAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:32508407 original size:42 final size:42
Alignment explanation
Indices: 32508346--32508451 Score: 194
Period size: 42 Copynumber: 2.5 Consensus size: 42
32508336 TCATTAAATA
*
32508346 AACTCATTTAATTAAACTAAGATGAGTTGTATTAATGACCAGC
1 AACTCATTT-ATTAAACTAAGATGAGTTGTATTAATGACCAAC
32508389 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAAC
1 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAAC
32508431 AACTCATTTATTAAACTAAGA
1 AACTCATTTATTAAACTAAGA
32508452 GGCTTAAATG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
42 53 0.85
43 9 0.15
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (42 bp):
AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAAC
Found at i:32509398 original size:37 final size:37
Alignment explanation
Indices: 32509348--32509427 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
32509338 CTTATTACGA
* *
32509348 AGTCTTACCCGGACATAATCTC-CACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATC-CACACACGAAGTCATCG
*
32509385 AGTCTTACCCGGACAAAATCCACACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATCCACACACGAAGTCATCG
*
32509422 GGTCTT
1 AGTCTT
32509428 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCCACACACGAAGTCATCG
Found at i:32509624 original size:47 final size:47
Alignment explanation
Indices: 32509546--32513122 Score: 3512
Period size: 47 Copynumber: 75.7 Consensus size: 47
32509536 CCCTTCGACA
* * * * * *
32509546 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32509593 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32509640 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32509687 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32509734 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32509783 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32509832 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32509879 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32509926 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32509975 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510022 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510069 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32510118 CTTATCACATATATATAAACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510167 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510214 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510261 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510308 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32510355 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510402 CTTATCACAAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32510451 CTTATCACAAATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510498 CTTATCACAAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510547 CTTATCACAAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510596 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510643 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510692 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510739 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32510788 CTTATCACATATATACACTTTAACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32510835 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32510882 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**** ***
32510929 CTTATCACATATATATACACTTTCACATTCATCACATATATACACTTTCAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT-CGGCCA-TTAGGC
* * * *
32510980 ATTCATCACATCGGCCAT-TAGGC-CTTATCACA-T-AT-ATATAC--ACTTTCA--C
1 CTT-ATCACAT-----ATATA--CACTT-TCACATTCATCACAT-CGGCCATT-AGGC
* **** *** * **
32511029 ATTCATCACAT-CGGCCA-TTAGGCCTT-ATCACAT-----ATATATAC
1 CTT-ATCACATATATACACTTTCACATTCATCACATCGGCCAT-TAGGC
* ** * * * **
32511070 ACTT-TCACATTTAT-CACATCGGC-CATT-AGGC-CTTATC-ACAAATATATAC
1 -CTTATCACATATATACAC-T-TTCACATTCA-TCAC--ATCGGC-CAT-TAGGC
* * * * * **
32511119 ACTT-TCACAT-TCAT-CAC-ATCGGCCATT-AGGC-CTTATC-ACAAATATATAC
1 -CTTATCACATAT-ATACACTTTC--ACATTCA-TCAC--ATCGGC-CAT-TAGGC
* * * ** * * **
32511168 ACTT-TCACAT-TCAT-CAC-ATCGGCCATT-AGGCGTTATC-ACAAATATATAC
1 -CTTATCACATAT-ATACACTTTC--ACATTCA-TC-ACATCGGC-CAT-TAGGC
* * * * ** * **
32511217 ACTT-TCATAT-TCAT-CAC-ATCGGCCATT-AGGCGTTATC--ACATATATAC
1 -CTTATCACATAT-ATACACTTTC--ACATTCA-TC-ACATCGGCCAT-TAGGC
* * * ** * **
32511264 ACTT-TCACAT-TCAT-CAC-ATCGGCCATT-AGGCGTTATC--ACATATATAC
1 -CTTATCACATAT-ATACACTTTC--ACATTCA-TC-ACATCGGCCAT-TAGGC
* * * * **
32511311 ACTT-TCACAT-TCAT-CAC-ATCGGCCATT-AGGC-CTTATC--ACATATATAC
1 -CTTATCACATAT-ATACACTTTC--ACATTCA-TCAC--ATCGGCCAT-TAGGC
* * * * **
32511358 ACTT-TCACAT-TCAT-CAC-ATCGGCCATT-AGGC-CTTATC--ACATATATAC
1 -CTTATCACATAT-ATACACTTTC--ACATTCA-TCAC--ATCGGCCAT-TAGGC
* * * * * **
32511405 ACTT-TCACAT-TCAT-CAC-ATCGGCCATT-AGGC-CTTATC-ACAAATATATAC
1 -CTTATCACATAT-ATACACTTTC--ACATTCA-TCAC--ATCGGC-CAT-TAGGC
* * * * **
32511454 ACTT-TCACAT-TCAT-CAC-ATCGGCCATT-AGGC-CTTATC--ACATATATAC
1 -CTTATCACATAT-ATACACTTTC--ACATTCA-TCAC--ATCGGCCAT-TAGGC
** * *
32511501 ACTT-TCAC--AT-T-CA---TCACA-TCGGC-CATTAGGCC-TTA-TC
1 -CTTATCACATATATACACTTTCACATTCATCACA-TCGGCCATTAGGC
** * * ** * *
32511538 ACATATATAT-ACACT-TTCACATTCATCACA-TCGGC-CATTAGGCC-TTA-TC
1 -C---T-TATCACA-TATATACACT-TTCACATTCATCACA-TCGGCCATTAGGC
* ** *
32511587 ACATATAT-ACACTTTA-ACA-TTCATCACA-TCGGC-CATTAGGCC--T----
1 -C-T-TATCACA-TATATACACTT--TCACATTCATCACA-TCGGCCATTAGGC
32511630 --TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32511675 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32511722 CTTATCACATATATATACACTTTCACATTCATCACATCGG-CATTA-GC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32511769 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32511816 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32511865 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32511914 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32511961 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512008 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32512057 CTTATCACATATATGCAATTTCACATTCATCACAGCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32512104 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512151 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512200 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32512247 CTTATCACATATATATACACTTTCACAATCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512296 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32512343 CTTATCACATATATACACTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
32512390 CTTATCTCATATATGCA-TGTTCACATCCATCACAT-AG--A--A-TC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * * * * * *
32512431 CTACATCA-AAATATAGTAC--TGACA--CA--A-AT--GCCCTTCGGGA
1 CT-TATCACATATATA-CACTTTCACATTCATCACATCGGCCATT-AGGC
* * * * * * *
32512471 CTTATCACATTTATACACTTTCACATCCATCACGTTGGGCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32512518 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512565 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32512612 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512659 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512708 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512755 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32512804 CTTACCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512851 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512898 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512945 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32512994 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32513041 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32513088 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
32513123 AGAATCCTAC
Statistics
Matches: 3260, Mismatches: 138, Indels: 264
0.89 0.04 0.07
Matches are distributed among these distances:
34 1 0.00
35 2 0.00
36 1 0.00
37 4 0.00
38 16 0.00
39 27 0.01
40 28 0.01
41 18 0.01
42 22 0.01
43 7 0.00
44 6 0.00
45 33 0.01
46 13 0.00
47 1918 0.59
48 10 0.00
49 1116 0.34
50 6 0.00
51 7 0.00
52 5 0.00
53 4 0.00
54 4 0.00
55 6 0.00
56 6 0.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32509775 original size:96 final size:94
Alignment explanation
Indices: 32509546--32513122 Score: 5341
Period size: 96 Copynumber: 37.4 Consensus size: 94
32509536 CCCTTCGACA
* * * * * * * *
32509546 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32509611 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
32509640 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32509705 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
32509734 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
32509799 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
32509832 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32509897 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
32509926 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
32509991 AATTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
32510022 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32510087 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
32510118 CTTATCACATATATATAAACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32510183 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
32510214 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32510279 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
32510308 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
32510373 TTTCACATTCATCACATCGGCGATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
32510402 CTTATCACAAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32510467 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
32510498 CTTATCACAAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
32510563 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
32510596 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32510661 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
32510692 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32510757 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
32510788 CTTATCACATATATACACTTTAACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32510853 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
32510882 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
**** ***
32510947 ACTTTCACATTCATCACATATATACACTTTCAC
64 ACTTTCACATTCATCACAT-CGGCCA-TTAGGC
* ** *
32510980 ATTCATCACATCGGCCAT-TAGGC-CTTATCACATATATATACACTTTCACATTCATCACA-TCG
1 CTT-ATCACAT-----ATATA--CACTT-TCAC----AT-T-CA---TCACA-TCGGC-CATTAG
* * *** *
32511042 GCCATTAGGC-C-T-TAT-CACATATATATACACTT--TCACATTTATCACA-TCGGC
46 GCC-TTA-TCACATATATACAC-T-T-T-CACA-TTCATCACA-TCGGC-CATTAGGC
* * ** * *
32511093 CATTAGGC-C-T-TATCACAAATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTA
1 C-TTA-TCACATATAT-AC-ACT-TTCACATTCATCA---------CATCGGCCATTAGGCCTTA
32511154 TCACAAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
52 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32511199 GTTATCACAAATATATACACTTTCATATTCATCACATCGGCCATTAGGCGTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32511264 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
32511295 GTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32511360 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
32511389 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32511454 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
32511485 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32511550 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
32511581 CTTATCACATATATACACTTTAACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32511646 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
32511675 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32511740 ACTTTCACATTCATCACATCGG-CATTA-GC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
32511769 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32511834 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
32511865 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32511930 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
32511961 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32512026 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
32512057 CTTATCACATATATGCAATTTCACATTCATCACAGCGGCCATTAGGCCTTATCATATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32512122 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
32512151 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32512216 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
32512247 CTTATCACATATATATACACTTTCACAATCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32512312 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32512343 CTTATCACATATATACACTTTCACATTAATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
32512407 TGTTCACATCCATCACAT-AG--A--A-TC
66 T-TTCACATTCATCACATCGGCCATTAGGC
* * * * * * * *
32512431 CTACATCA-AAATATAGTAC--TGACA--CA--A-AT--GCCCTTCGGGACTTATCACATTTATA
1 CT-TATCACATATATA-CACTTTCACATTCATCACATCGGCCATT-AGGCCTTATCACATATATA
* * * * * *
32512486 CACTTTCACATCCATCACGTTGGGCACTCGGC
63 CACTTTCACATTCATCACATCGGCCATTAGGC
* *
32512518 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32512583 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
32512612 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32512677 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
32512708 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32512773 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
32512804 CTTACCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32512869 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
32512898 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32512963 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
32512994 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32513059 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
32513088 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
32513123 AGAATCCTAC
Statistics
Matches: 3236, Mismatches: 130, Indels: 234
0.90 0.04 0.06
Matches are distributed among these distances:
80 5 0.00
81 31 0.01
82 4 0.00
83 1 0.00
84 1 0.00
85 1 0.00
86 5 0.00
87 12 0.00
88 13 0.00
89 7 0.00
90 2 0.00
91 1 0.00
92 1 0.00
93 5 0.00
94 1199 0.37
95 15 0.00
96 1562 0.48
97 2 0.00
98 216 0.07
99 7 0.00
103 3 0.00
104 8 0.00
105 19 0.01
106 23 0.01
107 14 0.00
108 9 0.00
109 10 0.00
110 4 0.00
111 5 0.00
112 5 0.00
113 6 0.00
114 17 0.01
115 14 0.00
116 8 0.00
117 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:32509844 original size:143 final size:140
Alignment explanation
Indices: 32509546--32513122 Score: 5239
Period size: 143 Copynumber: 25.2 Consensus size: 140
32509536 CCCTTCGACA
* * * * * * * *
32509546 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32509611 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
32509676 GGCCATTAGGC
130 GGCCATTAGGC
32509687 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32509752 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
32509817 CATCGGCCATTAGGC
126 CATCGGCCATTAGGC
32509832 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32509897 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
32509962 TCGGCCATTAGGC
128 TCGGCCATTAGGC
*
32509975 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32510040 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
32510105 TCGGCCATTAGGC
128 TCGGCCATTAGGC
*
32510118 CTTATCACATATATATAAACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32510183 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
32510248 TCGGCCATTAGGC
128 TCGGCCATTAGGC
32510261 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32510326 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
32510391 GGCGATTAGGC
130 GGCCATTAGGC
*
32510402 CTTATCACAAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATAC
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32510467 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATATACACTTTCACATTCATCA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
32510532 CATCGGCCATTAGGC
126 CATCGGCCATTAGGC
32510547 CTTATCACAAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32510612 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
32510677 CATCGGCCATTAGGC
126 CATCGGCCATTAGGC
32510692 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
32510757 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTAACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
32510822 TCGGCCATTAGGC
128 TCGGCCATTAGGC
*
32510835 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32510900 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
32510965 T-----ATATA--C
128 TCGGCCAT-TAGGC
** * * * * *
32510972 ACTT-TCAC-AT-T-CA---TCACA-TCGGCCA-TTAGGCCTTATCA--CATATATATACACT-T
1 -CTTATCACAATATACACTTTCACATTC-ATCACATCGGCC--ATTAGGCCT-TAT-CACA-TAT
* * * * * *
32511025 -T-CACATTCATCA--CATCGGCCATTAGGCC-TTA-TCACATATATATACACT-T-TCACATTT
59 ATACACTTTCA-CATTCATC--ACA-TCGGCCATTAGGC-C-T-TAT-CACA-TATAT-ACACTT
** *
32511082 ATCACA-TCGGC-CATTAGGCC-TTA---
114 -TCACATTCATCACA-TCGGCCATTAGGC
* *
32511105 -TCA-CAAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
32511168 ACTTTCACATTCATCACATCGGCCATTAGGCGTTATCACAAATATATACACTTTCATATTCATCA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
32511233 CATCGGCCATTAGGC
126 CATCGGCCATTAGGC
* *
32511248 GTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCGTTATCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32511313 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
32511378 GGCCATTAGGC
130 GGCCATTAGGC
32511389 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32511454 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
32511519 TCGGCCATTAGGC
128 TCGGCCATTAGGC
32511532 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
32511597 ACTTTAACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
32511662 TCGGCCATTAGGC
128 TCGGCCATTAGGC
*
32511675 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32511740 ACTTTCACATTCATCACATCGG-CATTA-GCCTTATCACATATATACACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
32511803 TCGGCCATTAGGC
128 TCGGCCATTAGGC
32511816 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
32511881 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
61 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
32511946 CATCGGCCATTAGGC
126 CATCGGCCATTAGGC
*
32511961 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
32512026 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCAATTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
32512091 GCGGCCATTAGGC
128 TCGGCCATTAGGC
*
32512104 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
32512169 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
32512234 TCGGCCATTAGGC
128 TCGGCCATTAGGC
*
32512247 CTTATCACATATATATACACTTTCACAATCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
32512312 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTAATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
32512377 TCGGCCATTAGGC
128 TCGGCCATTAGGC
* * * * * * *
32512390 CTTATCTCATATATGCA-TGTTCACATCCATCACAT-AG--A--A-TCCTACATCA-AAATATAG
1 CTTATCACA-ATATACACT-TTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATA-
* * * * * * *
32512447 TAC--TGACA--CA--A-AT--GCCCTTCGGGACTTATCACATTTATACACTTTCACATCCATCA
62 CACTTTCACATTCATCACATCGGCCATT-AGGCCTTATCACATATATACACTTTCACATTCATCA
* * * * *
32512503 CGTTGGGCACTCGGC
126 CATCGGCCATTAGGC
* *
32512518 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32512583 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
32512648 GACCATTAGGC
130 GGCCATTAGGC
32512659 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32512724 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
32512789 CATCGGCCATTAGGC
126 CATCGGCCATTAGGC
* *
32512804 CTTACCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32512869 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
32512934 GGCCATTAGGC
130 GGCCATTAGGC
32512945 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32513010 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
32513075 TCGGCCATTAGGC
128 TCGGCCATTAGGC
* * *
32513088 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACA-ATATACACT-TTCACATTCATCACAT
32513123 AGAATCCTAC
Statistics
Matches: 3193, Mismatches: 131, Indels: 224
0.90 0.04 0.06
Matches are distributed among these distances:
127 5 0.00
128 73 0.02
129 21 0.01
130 23 0.01
131 28 0.01
132 12 0.00
133 13 0.00
134 17 0.01
135 18 0.01
136 7 0.00
137 14 0.00
138 25 0.01
139 35 0.01
140 19 0.01
141 572 0.18
142 14 0.00
143 1625 0.51
144 7 0.00
145 665 0.21
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (140 bp):
CTTATCACAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:32510891 original size:22 final size:22
Alignment explanation
Indices: 32510863--32510938 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
32510853 TTTCACATTC
32510863 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
* ** *** *
32510885 ATCACATATGTACACTTTCACATT
1 ATCACAT-CGGCCA-TTAGGCCTT
32510909 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
32510932 ATCACAT
1 ATCACAT
32510939 ATATATACAC
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:32510970 original size:27 final size:27
Alignment explanation
Indices: 32510932--32510990 Score: 104
Period size: 25 Copynumber: 2.3 Consensus size: 27
32510922 ATTAGGCCTT
32510932 ATCACATATATATACACTTTCACATTC
1 ATCACATATATATACACTTTCACATTC
32510959 ATCAC--ATATATACACTTTCACATTC
1 ATCACATATATATACACTTTCACATTC
32510984 ATCACAT
1 ATCACAT
32510991 CGGCCATTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 25 0.83
27 5 0.17
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.36
Consensus pattern (27 bp):
ATCACATATATATACACTTTCACATTC
Found at i:32510973 original size:74 final size:74
Alignment explanation
Indices: 32510885--32511039 Score: 301
Period size: 74 Copynumber: 2.1 Consensus size: 74
32510875 ATTAGGCCTT
*
32510885 ATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
32510950 TTCACATTC
66 TTCACATTC
32510959 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
32511024 TTCACATTC
66 TTCACATTC
32511033 ATCACAT
1 ATCACAT
32511040 CGGCCATTAG
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 80 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (74 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
TTCACATTC
Found at i:32511684 original size:22 final size:22
Alignment explanation
Indices: 32511656--32511731 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
32511646 TTTCACATTC
32511656 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
* ** *** *
32511678 ATCACATATGTACACTTTCACATT
1 ATCACAT-CGGCCA-TTAGGCCTT
32511702 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
32511725 ATCACAT
1 ATCACAT
32511732 ATATATACAC
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:32516437 original size:40 final size:40
Alignment explanation
Indices: 32516407--32516913 Score: 797
Period size: 40 Copynumber: 12.8 Consensus size: 40
32516397 AGCATGATTA
* * * * *
32516407 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
* * * *
32516447 CTCTTCGAG-TTTAGCACGGATATATTACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
32516486 CTCTTCG-GAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAG-ACTTAGCCCGGATACATCACTAGCACGAATG
32516526 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
32516566 CTCTTCGAGACTTAG-CCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
32516605 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
32516645 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
32516685 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
32516725 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
* *
32516765 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
32516805 CTCCTCGGGACTTAGCCCGGATATATCACTA-CACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
32516844 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
32516884 CTCCTCGGGACTTAGCCCGGATATATCACT
1 CTCTTCGAGACTTAGCCCGGATACATCACT
32516914 CTCATTCTCA
Statistics
Matches: 448, Mismatches: 14, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
38 1 0.00
39 109 0.24
40 337 0.75
41 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:32516618 original size:119 final size:120
Alignment explanation
Indices: 32516407--32516913 Score: 815
Period size: 119 Copynumber: 4.2 Consensus size: 120
32516397 AGCATGATTA
* * * * * *
32516407 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGAG-TTTAGCACGGATATA
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
*
32516471 TTACTAGCACGAATGCTCTTCG-GAACTTAGCCCGGATACATCACTAGCACGAATG
66 TCACTAGCACGAATGCTCTTCGAG-ACTTAGCCCGGATACATCACTAGCACGAATG
* *
32516526 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAG-CCGGATACA
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
32516590 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
66 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
* *
32516645 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
32516710 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
66 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
32516765 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
* * *
32516830 TCACTA-CACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
66 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
*
32516884 CTCCTCGGGACTTAGCCCGGATATATCACT
1 CTCTTCGGGACTTAGCCCGGATATATCACT
32516914 CTCATTCTCA
Statistics
Matches: 367, Mismatches: 18, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
119 232 0.63
120 135 0.37
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (120 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:32518185 original size:36 final size:36
Alignment explanation
Indices: 32518126--32518202 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
32518116 TTATTACGAA
* * * *
32518126 GTCTTACCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGACAAAATCCCCACACGAAGTCATCGG
*
32518162 GTCTTACCCGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGACAAAATCCCCACACGAAGTCATCGG
32518198 GTCTT
1 GTCTT
32518203 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (36 bp):
GTCTTACCCGACAAAATCCCCACACGAAGTCATCGG
Found at i:32518589 original size:49 final size:47
Alignment explanation
Indices: 32518320--32518806 Score: 821
Period size: 47 Copynumber: 10.2 Consensus size: 47
32518310 CCCTTCGGGA
* * * * * * *
32518320 CTTATCACATTTATACACTTTCACATCCATCACGTTGGTCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32518367 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32518414 CTTATCACATATATACACTTTCACATTCATCAACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATC-ACATCGGCCATTAGGC
32518462 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32518509 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32518556 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32518605 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32518652 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32518699 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32518748 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32518797 CTTATCACAT
1 CTTATCACAT
32518807 GTAACACCCC
Statistics
Matches: 423, Mismatches: 12, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
47 234 0.55
48 47 0.11
49 142 0.34
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32518646 original size:143 final size:143
Alignment explanation
Indices: 32518320--32518806 Score: 843
Period size: 143 Copynumber: 3.4 Consensus size: 143
32518310 CCCTTCGGGA
* * * * * * * * *
32518320 CTTATCACATTTATACACTTTCACATCCATCACGTTGGTCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32518385 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAAC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC-AC
32518448 ATCGGCCATTAGGC
130 ATCGGCCATTAGGC
32518462 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32518527 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
32518592 TCGGCCATTAGGC
131 TCGGCCATTAGGC
32518605 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32518670 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
32518735 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
32518748 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
32518807 GTAACACCCC
Statistics
Matches: 331, Mismatches: 10, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
142 93 0.28
143 167 0.50
144 23 0.07
145 48 0.15
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:32520174 original size:27 final size:27
Alignment explanation
Indices: 32520144--32520294 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
32520134 ATATTGAGTC
* * *
32520144 CGCACACTCAGTGCTATATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32520171 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32520199 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
**
32520226 CGCACACTTAGTGCATCACAT--TCATTT
1 CGCACACTTAGTGC-T-ACATAGTCAAAT
*
32520253 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32520280 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32520295 GTACAATTTA
Statistics
Matches: 105, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
25 4 0.04
27 75 0.71
28 23 0.22
29 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32538704 original size:40 final size:40
Alignment explanation
Indices: 32538645--32538812 Score: 218
Period size: 40 Copynumber: 4.2 Consensus size: 40
32538635 GGATTGATAC
*
32538645 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAAAT
* *
32538685 CCGGGCTAAGTCCCAAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAAAT
*
32538725 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-AAT
* * *
32538765 CCGAGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTAAAT
32538805 CC-GGCTAA
1 CCGGGCTAA
32538813 ACTCCGAAGG
Statistics
Matches: 112, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
39 9 0.08
40 102 0.91
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAAAT
Found at i:32552063 original size:67 final size:64
Alignment explanation
Indices: 32551923--32552106 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
32551913 ATACAGTTCG
* * * * * * *
32551923 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGAACCACCCATGCGACCTAGCTACATATATCCCAT
32551985 A
64 A
* * *
32551986 GCTCTCTTGTCTACATGGTGTCCTTTACCTAGAACCACGCATGCGACCTAGCTACATATATCCCA
1 GCTCTCTTGTCTACATGGTGTAC---ACATAGAACCACCCATGCGACCTAGCTACATATATCCCA
32552051 TA
63 TA
* *
32552053 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
32552107 CATAATGTCT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 27 0.27
66 22 0.22
67 32 0.32
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCATA
Found at i:32552576 original size:30 final size:30
Alignment explanation
Indices: 32552542--32552598 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
32552532 TAATTCAAAA
32552542 TTTTGCAAAATTACAATTTTGCCCCTAAAC
1 TTTTGCAAAATTACAATTTTGCCCCTAAAC
* * * *
32552572 TTTTGCATATTTACACTTTTGCGCCTA
1 TTTTGCAAAATTACAATTTTGCCCCTA
32552599 CGCTCGGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCTAAAC
Found at i:32553108 original size:123 final size:123
Alignment explanation
Indices: 32552941--32553186 Score: 474
Period size: 123 Copynumber: 2.0 Consensus size: 123
32552931 GGGTTAGAAT
32552941 GGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTATCCATGGCTTCCCCCATGCTAATTTCGG
1 GGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTATCCATGGCTTCCCCCATGCTAATTTCGG
*
32553006 CCTCCATGAAAAAGATGAGTCAATTTTGGCTTTATTTTCCCTTTTTATTTCTTTTAAC
66 CCTCAATGAAAAAGATGAGTCAATTTTGGCTTTATTTTCCCTTTTTATTTCTTTTAAC
*
32553064 GGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTATCCATGGCTTCTCCCATGCTAATTTCGG
1 GGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTATCCATGGCTTCCCCCATGCTAATTTCGG
32553129 CCTCAATGAAAAAGATGAGTCAATTTTGGCTTTATTTTCCCTTTTTATTTCTTTTAAC
66 CCTCAATGAAAAAGATGAGTCAATTTTGGCTTTATTTTCCCTTTTTATTTCTTTTAAC
32553187 CCTTCCTTAC
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 121 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (123 bp):
GGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTATCCATGGCTTCCCCCATGCTAATTTCGG
CCTCAATGAAAAAGATGAGTCAATTTTGGCTTTATTTTCCCTTTTTATTTCTTTTAAC
Found at i:32553782 original size:96 final size:91
Alignment explanation
Indices: 32553524--32553793 Score: 246
Period size: 96 Copynumber: 2.9 Consensus size: 91
32553514 CAATGAGAGC
* * * *
32553524 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAAACGA-GAGCTAGTGTAAGA-TATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAAC-TTG--ATGATGGGCTAGTGTAAGACCATGT
32553587 CT-GGACATGCATCGGCTACGAGATTTGT
63 CTGGGACATGCATCGGCTACGAGATTTGT
* * *
32553615 CTGTGTAAGACCATGTCTGGGACATGGCTTCGACAC-GGAT-ATGCGAAAGCTAGTGTAAGACCA
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-A-ACTTGATGATG-G---GCTAGTGTAAGACCA
* **
32553678 TGTTTGGGACATGGCATCGGCCT-CGATTTTGATAGT
60 TGTCTGGGACAT-GCATCGG-CTACGAGATT--T-GT
* *
32553714 CAGTGTAAGACCATGTCTGGGATATGGCATCAACTTGATGGATGGGCCAGTGTAAGACCATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAT-GATGGGCTAGTGTAAGACCATGTCT
32553779 GGGACATAGCATCGG
65 GGGACAT-GCATCGG
32553794 TATTACACAC
Statistics
Matches: 145, Mismatches: 17, Indels: 29
0.76 0.09 0.15
Matches are distributed among these distances:
88 1 0.01
89 2 0.01
91 30 0.21
92 1 0.01
93 13 0.09
94 5 0.03
95 6 0.04
96 44 0.30
97 4 0.03
98 5 0.03
99 31 0.21
100 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (91 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGATGGGCTAGTGTAAGACCATGTCTG
GGACATGCATCGGCTACGAGATTTGT
Found at i:32557812 original size:44 final size:42
Alignment explanation
Indices: 32557699--32557823 Score: 121
Period size: 44 Copynumber: 2.9 Consensus size: 42
32557689 GTAATAAAAT
*
32557699 ATCGATGCCACTATCCCAGATAG-GGTCTTACACGAAA--TCAA
1 ATCGATGCCAC-GTCCCAGAT-GTGGTCTTACACGAAATCTCAA
* * * **
32557740 ATACAATGCCGATGTCCTAGACATGGTCTTACACGTAAATCTCAA
1 AT-CGATGCC-ACGTCCCAGATGTGGTCTTACACG-AAATCTCAA
32557785 ATCGATGCCAACGTCCCAGATGTGGTCTTACACGAAATC
1 ATCGATGCC-ACGTCCCAGATGTGGTCTTACACGAAATC
32557824 ACATATCGGA
Statistics
Matches: 66, Mismatches: 12, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
41 2 0.03
42 23 0.35
43 9 0.14
44 26 0.39
45 6 0.09
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATCGATGCCACGTCCCAGATGTGGTCTTACACGAAATCTCAA
Found at i:32567623 original size:39 final size:39
Alignment explanation
Indices: 32567569--32567667 Score: 171
Period size: 39 Copynumber: 2.5 Consensus size: 39
32567559 AACACAAATG
32567569 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
* *
32567608 CCTTCGGGACTTAGCCCGGATATAACACCAGCATGAATG
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
*
32567647 CCTTCGAGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
32567668 GTAAATCTCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
Found at i:32575506 original size:39 final size:39
Alignment explanation
Indices: 32575452--32575632 Score: 272
Period size: 39 Copynumber: 4.6 Consensus size: 39
32575442 AACACAAATG
* *
32575452 CCTTCGGGACTTAGCCCGAATATAACTCCAGCACGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
* * *
32575491 CCTTCGGTACTTAGCCAGGATATAACACCAGCATGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
* *
32575530 CCTTCGAGACTTAGCTCGGATATAACACCAGCACGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
* *
32575569 CCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
*
32575608 CCTTCGGGACTTAGCCTGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAA
32575633 ATCTCACACA
Statistics
Matches: 127, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 127 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
Found at i:32580012 original size:44 final size:42
Alignment explanation
Indices: 32579874--32580032 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 42
32579864 TACAATTCCA
* * * * **
32579874 ACGTCCCAGATATGGCCTTACATGTAATCAACTATCAATGCC
1 ACGTCCCAGACATGGTCTTACACGAAATCAAAAATCAATGCC
* *
32579916 ACTGTCCCAGACAGGGTCTTACACGAAATCAAAAAT-GATGCC
1 AC-GTCCCAGACATGGTCTTACACGAAATCAAAAATCAATGCC
* **
32579958 GATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCAATGCC
1 -ACGTCCCAGACATGGTCTTACACG-AAATCAAAAATCAATGCC
* *
32580002 AACATCCCAGACGTGGTCTTACACGAAATCA
1 -ACGTCCCAGACATGGTCTTACACGAAATCA
32580033 CATATCGTAA
Statistics
Matches: 95, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 28 0.29
43 41 0.43
44 26 0.27
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
ACGTCCCAGACATGGTCTTACACGAAATCAAAAATCAATGCC
Found at i:32584331 original size:18 final size:19
Alignment explanation
Indices: 32584283--32584332 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
32584273 ACACGACCAA
*
32584283 GGCCAATATGGGC-TGTGT
1 GGCCCATATGGGCATGTGT
* * *
32584301 GGGCCACACGGGCATGTG-
1 GGCCCATATGGGCATGTGT
32584319 GGCCCATATGGGCA
1 GGCCCATATGGGCA
32584333 GACCAACACG
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.18, C:0.24, G:0.40, T:0.18
Consensus pattern (19 bp):
GGCCCATATGGGCATGTGT
Found at i:32586221 original size:41 final size:40
Alignment explanation
Indices: 32586143--32586425 Score: 311
Period size: 41 Copynumber: 7.0 Consensus size: 40
32586133 TTTTAAAATT
* * ** *
32586143 CAGAGCAATAGCGGCGTTCTAAAAAAACGCCGCTAAAA-A
1 CAGAGCATTAGCGGCGTTTTAGTAAAACGCCGCTAAAAGC
**
32586182 CAGAGCAACAGCGGCGTTTTAGTAAAAAACGCCGCTAAAAGC
1 CAGAGCATTAGCGGCGTTTTAGT--AAAACGCCGCTAAAAGC
* *
32586224 CAGAGCATTAGCAGCACTTTCT-GTAAAACGCCGCTAAAAGC
1 CAGAGCATTAGCGGC-GTTT-TAGTAAAACGCCGCTAAAAGC
** *
32586265 CAGAGCATTAG-GGCGCTTTCGGTAAAACGCCGCTAAAATC
1 CAGAGCATTAGCGGCG-TTTTAGTAAAACGCCGCTAAAAGC
*
32586305 CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAGC
1 CAGAGCATTAGCGGCGTTTTA-GTAAAACGCCGCTAAAAGC
* *
32586346 CAGAGCATTAGCGTCGCTTTAGGTAAAACGCCGCTAAAAGC
1 CAGAGCATTAGCGGCGTTTTA-GTAAAACGCCGCTAAAAGC
* **
32586387 CAGAGCATTAGCGACGCTTTCGGTAAAACGCCGCTAAAA
1 CAGAGCATTAGCGGCG-TTTTAGTAAAACGCCGCTAAAA
32586426 ATCTCATAAC
Statistics
Matches: 212, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
39 19 0.09
40 36 0.17
41 137 0.65
42 14 0.07
43 5 0.02
44 1 0.00
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (40 bp):
CAGAGCATTAGCGGCGTTTTAGTAAAACGCCGCTAAAAGC
Found at i:32586292 original size:81 final size:81
Alignment explanation
Indices: 32586166--32586425 Score: 364
Period size: 82 Copynumber: 3.2 Consensus size: 81
32586156 GCGTTCTAAA
* ** *
32586166 AAAACGCCGCTAAAA-ACAGAGCAACAGCGGCGTTTTA-GTAAAAAACGCCGCTAAAAGCCAGAG
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTAGGT--AAAACGCCGCTAAAAGCCAGAG
* *
32586229 CATTAGCAGCACTTTCTGT
64 CATTAGC-GCGCTTTCGGT
* *
32586248 AAAACGCCGCTAAAAGCCAGAGCATTAG-GGCGCTTTCGGTAAAACGCCGCTAAAATCCAGAGCA
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAGCCAGAGCA
*
32586312 TTAGCGGCGCTTTAGGT
66 TTAGC-GCGCTTTCGGT
*
32586329 AAAACGCCGCTAAAAGCCAGAGCATTAGCGTCGCTTTAGGTAAAACGCCGCTAAAAGCCAGAGCA
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAGCCAGAGCA
32586394 TTAGCGACGCTTTCGGT
66 TTAGCG-CGCTTTCGGT
32586411 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
32586426 ATCTCATAAC
Statistics
Matches: 160, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
81 65 0.41
82 84 0.52
83 11 0.07
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (81 bp):
AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAGCCAGAGCA
TTAGCGCGCTTTCGGT
Found at i:32586353 original size:122 final size:122
Alignment explanation
Indices: 32586166--32586426 Score: 393
Period size: 122 Copynumber: 2.1 Consensus size: 122
32586156 GCGTTCTAAA
*
32586166 AAAACGCCGCTAAAAACAGAGCAACAGCGGCGTTTTAGTAAAAAACGCCGCTAAAAGCCAGAGCA
1 AAAACGCCGCTAAAAACAGAGCAACAGCGGCGCTTTAGT-AAAAACGCCGCTAAAAGCCAGAGCA
** *
32586231 TTAGCAG-CACTTTCTGTAAAACGCCGCTAAAAGCCAGAGCATTAG-GGCGCTTTCGGT
65 TTAGC-GTCACTTTAGGTAAAACGCCGCTAAAAGCCAGAGCATTAGCGACGCTTTCGGT
* **
32586288 AAAACGCCGCTAAAATCCAGAGCATTAGCGGCGCTTTAGGT-AAAACGCCGCTAAAAGCCAGAGC
1 AAAACGCCGCTAAAA-ACAGAGCAACAGCGGCGCTTTA-GTAAAAACGCCGCTAAAAGCCAGAGC
*
32586352 ATTAGCGTCGCTTTAGGTAAAACGCCGCTAAAAGCCAGAGCATTAGCGACGCTTTCGGT
64 ATTAGCGTCACTTTAGGTAAAACGCCGCTAAAAGCCAGAGCATTAGCGACGCTTTCGGT
32586411 AAAACGCCGCTAAAAA
1 AAAACGCCGCTAAAAA
32586427 TCTCATAACC
Statistics
Matches: 126, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
121 1 0.01
122 79 0.63
123 44 0.35
124 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (122 bp):
AAAACGCCGCTAAAAACAGAGCAACAGCGGCGCTTTAGTAAAAACGCCGCTAAAAGCCAGAGCAT
TAGCGTCACTTTAGGTAAAACGCCGCTAAAAGCCAGAGCATTAGCGACGCTTTCGGT
Found at i:32587507 original size:24 final size:24
Alignment explanation
Indices: 32587440--32587507 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 24
32587430 AATTTAGAAG
* *
32587440 ATAAATGTATATAAGATAAATATAA
1 ATAAATATATATATGA-AAATATAA
* * *
32587465 ATAAA-ATATTATTTTAAAATATAT
1 ATAAATATA-TATATGAAAATATAA
32587489 ATAAATATATATATGAAAA
1 ATAAATATATATATGAAAA
32587508 GTGGTTTAGT
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
24 22 0.65
25 12 0.35
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (24 bp):
ATAAATATATATATGAAAATATAA
Found at i:32591886 original size:290 final size:287
Alignment explanation
Indices: 32591366--32592067 Score: 1352
Period size: 290 Copynumber: 2.4 Consensus size: 287
32591356 CCAACCTTGT
32591366 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
32591431 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAATCAA
32591496 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
32591561 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
196 TCCAATTTACTTATAAAAATTAAACTACGATTC-TTTTTGATATTATTATATTCAAAATACTA--
32591626 TTTTTATATTAATAATGTTTGATTTTAATA
258 TTTTTATATTAATAATGTTTGATTTTAATA
32591656 TTTAAAT-TTTTAAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGC
1 TTTAAATATTTT-AAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGC
32591720 TGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAATCA
65 TGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAATCA
32591785 AAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTAT
130 AAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTAT
32591850 TTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTGATATTATTATATTCAAAATACTATT
195 TTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTGATATTATTATATTCAAAATACTATT
32591915 TTTATATTAATAATGTTTGATTTTAATA
260 TTTATATTAATAATGTTTGATTTTAATA
32591943 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
32592008 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAA
32592068 TTCTCCGTTT
Statistics
Matches: 409, Mismatches: 1, Indels: 7
0.98 0.00 0.02
Matches are distributed among these distances:
287 150 0.37
288 4 0.01
289 33 0.08
290 222 0.54
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (287 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAATCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTGATATTATTATATTCAAAATACTATTT
TTATATTAATAATGTTTGATTTTAATA
Found at i:32592323 original size:15 final size:15
Alignment explanation
Indices: 32592279--32592334 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
32592269 AACGACATGT
*
32592279 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
32592295 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
32592308 ATATTATTTAATTAA
1 ATATTATTTAATTAA
32592323 ATATTATTTAAT
1 ATATTATTTAAT
32592335 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 16 0.46
16 4 0.11
17 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:32592469 original size:27 final size:27
Alignment explanation
Indices: 32592439--32592655 Score: 213
Period size: 27 Copynumber: 7.9 Consensus size: 27
32592429 TATTTGATAT
* * *
32592439 CATAATTTATATAACTTACAAAACGTA
1 CATAACTTATATAACTTACATAACTTA
*
32592466 CATAACTTATATAACTTATATAACTTA
1 CATAACTTATATAACTTACATAACTTA
* *
32592493 -ATAACTTATATAACATATATAACTTA
1 CATAACTTATATAACTTACATAACTTA
*
32592519 CATAACTTATATAACATACATAACTTA
1 CATAACTTATATAACTTACATAACTTA
* * *
32592546 TATAACTTATATAACTTAGATAA-ATA
1 CATAACTTATATAACTTACATAACTTA
* *
32592572 TATAACTTACATAACTTACATAATACTTA
1 CATAACTTATATAACTTACAT-A-ACTTA
* * *
32592601 AATATATTTTATATCATAATTTACATAACTTA
1 CATA-A--CT-TAT-ATAACTTACATAACTTA
*
32592633 CATAACTTATATAACTTAGATAA
1 CATAACTTATATAACTTACATAA
32592656 ATATATAATT
Statistics
Matches: 160, Mismatches: 21, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
26 46 0.29
27 80 0.50
28 4 0.03
29 6 0.04
30 1 0.01
31 1 0.01
32 9 0.06
33 3 0.02
34 10 0.06
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (27 bp):
CATAACTTATATAACTTACATAACTTA
Found at i:32592479 original size:9 final size:9
Alignment explanation
Indices: 32592440--32592708 Score: 186
Period size: 9 Copynumber: 29.4 Consensus size: 9
32592430 ATTTGATATC
*
32592440 ATAATTTAT
1 ATAACTTAT
*
32592449 ATAACTTAC
1 ATAACTTAT
* * *
32592458 AAAACGTAC
1 ATAACTTAT
32592467 ATAACTTAT
1 ATAACTTAT
32592476 ATAACTTAT
1 ATAACTTAT
32592485 ATAACTTA-
1 ATAACTTAT
32592493 ATAACTTAT
1 ATAACTTAT
*
32592502 ATAACATAT
1 ATAACTTAT
*
32592511 ATAACTTAC
1 ATAACTTAT
32592520 ATAACTTAT
1 ATAACTTAT
* *
32592529 ATAACATAC
1 ATAACTTAT
32592538 ATAACTTAT
1 ATAACTTAT
32592547 ATAACTTAT
1 ATAACTTAT
*
32592556 ATAACTTAG
1 ATAACTTAT
*
32592565 ATAA-ATAT
1 ATAACTTAT
*
32592573 ATAACTTAC
1 ATAACTTAT
*
32592582 ATAACTTAC
1 ATAACTTAT
32592591 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
32592604 ATATTTTATAT
1 ATA-ACT-TAT
* *
32592615 CATAATTTAC
1 -ATAACTTAT
*
32592625 ATAACTTAC
1 ATAACTTAT
32592634 ATAACTTAT
1 ATAACTTAT
*
32592643 ATAACTTAG
1 ATAACTTAT
*
32592652 ATAA-ATAT
1 ATAACTTAT
* *
32592660 ATAATTTAC
1 ATAACTTAT
*
32592669 ATAA-ATAT
1 ATAACTTAT
* *
32592677 ATATCATAT
1 ATAACTTAT
* *
32592686 CATAAATTAC
1 -ATAACTTAT
*
32592696 ATAACTTAC
1 ATAACTTAT
32592705 ATAA
1 ATAA
32592709 TACTTAAATA
Statistics
Matches: 209, Mismatches: 40, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
8 25 0.12
9 158 0.76
10 8 0.04
11 8 0.04
12 6 0.03
13 4 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:32592525 original size:71 final size:71
Alignment explanation
Indices: 32592435--32592594 Score: 223
Period size: 71 Copynumber: 2.2 Consensus size: 71
32592425 AATATATTTG
* * * *
32592435 ATATCATAATTTATATAACTTACAAAACGTACATAACTTATATAACTTATATAACTTA-ATAACT
1 ATAT-ATAACTTACATAACTTACAAAACATACATAACTTATATAACTTATATAACTTAGATAA-A
32592499 TATATAAC
64 TATATAAC
* *
32592507 ATATATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATA
1 ATATATAACTTACATAACTTACAAAACATACATAACTTATATAACTTATATAACTTAGATAAATA
32592572 TATAAC
66 TATAAC
* *
32592578 TTACATAACTTACATAA
1 ATATATAACTTACATAA
32592595 TACTTAAATA
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
71 71 0.90
72 8 0.10
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.37
Consensus pattern (71 bp):
ATATATAACTTACATAACTTACAAAACATACATAACTTATATAACTTATATAACTTAGATAAATA
TATAAC
Found at i:32592633 original size:114 final size:114
Alignment explanation
Indices: 32592511--32592732 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
32592501 TATAACATAT
* * *
32592511 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATA-AATAT-A
1 ATAACTTACATAACTTATATAACATACATAA-ATATATAACTTACATAA-ATAGATATAATATCA
* * *
32592574 TAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
32592625 ATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATATCATA
1 ATAACTTACATAACTTATATAACATACATAAATATATAACTTACATAAATAGATATAATATCATA
32592690 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
32592733 CATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAAATATATAACTTACATAAATAGATATAATATCATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:32592756 original size:43 final size:45
Alignment explanation
Indices: 32592660--32592758 Score: 125
Period size: 43 Copynumber: 2.3 Consensus size: 45
32592650 AGATAAATAT
* *
32592660 ATAATTTACATAAATATATATCATATCATAAATTACATAACTTAC
1 ATAATTTACTTAAATATATATCATATCATAAATAACATAACTTAC
* **
32592705 ATAA--TACTTAAATATATATCATATCATACATAAC-TAGTTTAC
1 ATAATTTACTTAAATATATATCATATCATAAATAACATAACTTAC
32592747 A-AATTTACTTAA
1 ATAATTTACTTAA
32592759 CTTACATAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
41 2 0.04
42 7 0.15
43 34 0.72
45 4 0.09
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (45 bp):
ATAATTTACTTAAATATATATCATATCATAAATAACATAACTTAC
Found at i:32599402 original size:43 final size:44
Alignment explanation
Indices: 32599304--32599516 Score: 251
Period size: 43 Copynumber: 4.9 Consensus size: 44
32599294 TGAATTCATC
* * * *
32599304 CACCGGCATT-TCA-CCTACTAGGCTCGAAGCTCG-ATA-TCATTT
1 CACCGGCATTAT-AGCCTGCTAGGCTCAAAGCCCGAATAGT-ATCT
* * *
32599346 CACCGGCATTATAG-CTACTAGGCTCGAAGACCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGTATCT
32599389 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT-T
1 CACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAATAGTATCT
*
32599433 CACCGGCATCATAGCCTGCTAGGCTCAAAGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGTATCT
* * *
32599477 CA-CTGCATCATAGCCTGCTAGGCTCAAAGGCCGAATAGTA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGTA
32599517 CCGTACAAAA
Statistics
Matches: 155, Mismatches: 9, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
42 28 0.18
43 70 0.45
44 45 0.29
45 12 0.08
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (44 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGTATCT
Found at i:32599440 original size:87 final size:86
Alignment explanation
Indices: 32599344--32599516 Score: 267
Period size: 87 Copynumber: 2.0 Consensus size: 86
32599334 TCGATATCAT
* * *
32599344 TTCACCGGCATTATAG-CTACTAGGCTCGAAGACCGAATAGTATCTCACCGGCATTATAGCCTGC
1 TTCACCGGCATCATAGCCTACTAGGCTCAAAGACCGAATAGTATCTCA-CGGCATCATAGCCTGC
32599408 TAGGCTCAAAGGCCCGAATAGTA
65 TAGGCTCAAAGG-CCGAATAGTA
* * *
32599431 TTCACCGGCATCATAGCCTGCTAGGCTCAAAGCCCGAATAGTATCTCACTGCATCATAGCCTGCT
1 TTCACCGGCATCATAGCCTACTAGGCTCAAAGACCGAATAGTATCTCACGGCATCATAGCCTGCT
32599496 AGGCTCAAAGGCCGAATAGTA
66 AGGCTCAAAGGCCGAATAGTA
32599517 CCGTACAAAA
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
86 10 0.13
87 41 0.52
88 28 0.35
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (86 bp):
TTCACCGGCATCATAGCCTACTAGGCTCAAAGACCGAATAGTATCTCACGGCATCATAGCCTGCT
AGGCTCAAAGGCCGAATAGTA
Found at i:32602020 original size:27 final size:27
Alignment explanation
Indices: 32601990--32602194 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
32601980 ATATTGAGTC
* * * *
32601990 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32602017 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32602044 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32602072 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32602099 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32602126 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32602153 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32602180 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32602195 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32609931 original size:27 final size:27
Alignment explanation
Indices: 32609901--32610105 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
32609891 ATATTGAGTC
* * * *
32609901 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32609928 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32609955 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32609983 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32610010 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32610037 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32610064 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32610091 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32610106 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32618500 original size:42 final size:42
Alignment explanation
Indices: 32618421--32618532 Score: 120
Period size: 42 Copynumber: 2.6 Consensus size: 42
32618411 TTTTATCAAA
* *
32618421 TCACCGGCATTTAGCCATGCTAGGTTTTAAACCCGAAT-TCATC
1 TCACCGGCATTTAGCC-TGCTAGGCTTGAAACCCGAATAT-ATC
* * *
32618464 -CACCGGCATTTCGCCTGCTAGGCTTGAAGGCGCGAATAGTATC
1 TCACCGGCATTTAGCCTGCTAGGCTTGAA-ACCCGAATA-TATC
32618507 TCACCGGCATTATAGCCTGCTAGGCT
1 TCACCGGCATT-TAGCCTGCTAGGCT
32618533 CAAAGGCCCG
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
41 11 0.19
42 20 0.34
43 3 0.05
44 11 0.19
45 13 0.22
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (42 bp):
TCACCGGCATTTAGCCTGCTAGGCTTGAAACCCGAATATATC
Found at i:32618530 original size:45 final size:44
Alignment explanation
Indices: 32618421--32618549 Score: 133
Period size: 45 Copynumber: 3.0 Consensus size: 44
32618411 TTTTATCAAA
* *
32618421 TCACCGGCATTTAGCCATGCTAGGTTTTAAA--CCCGAAT--TCATC
1 TCACCGGCATTTAGCC-TGCTAGG-CTCAAAGGCCCGAATAGT-ATC
* ** *
32618464 -CACCGGCATTTCGCCTGCTAGGCTTGAAGGCGCGAATAGTATC
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
32618507 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
32618550 CCGTACAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
40 4 0.06
41 7 0.10
42 20 0.28
43 3 0.04
44 11 0.15
45 27 0.38
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (44 bp):
TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:32627046 original size:27 final size:27
Alignment explanation
Indices: 32626922--32627099 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
32626912 TTAGTTTACC
* *
32626922 AAATTACTAAAATACCC-CCAGTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * * *
32626948 AAATTGCCAAAGTACCCCCGGTTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
32626975 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
32627002 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * **
32627029 ACATTA-TCAAAGTACCCTCGATTTACA
1 AAATTACT-AAAATACCCTCGATTTGTA
* * *** *
32627056 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
32627083 AAATTATTGAAATACCC
1 AAATTACTAAAATACCC
32627100 CTATAGGATA
Statistics
Matches: 116, Mismatches: 33, Indels: 5
0.75 0.21 0.03
Matches are distributed among these distances:
26 15 0.13
27 101 0.87
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:32627061 original size:81 final size:80
Alignment explanation
Indices: 32626922--32627100 Score: 187
Period size: 81 Copynumber: 2.2 Consensus size: 80
32626912 TTAGTTTACC
* * * ** *
32626922 AAATTACTAAAATACCCCCAGTTGTAAAATTGCCAAAGTACCCCCGGTTTGTAAAATTACTAAAA
1 AAATTACTAAAATACCCCCACTTGTAAAATTACCAAAGTACCCCCGATTTACAAAATTACCAAAA
*
32626987 TACCCTCAATTTGTA
66 TACCCTCAATTTATA
* * * * * **
32627002 AAATTACTAAAATACCCTCGACTTGTAACATTATCAAAGTACCCTCGATTTACAGAATTACCATT
1 AAATTACTAAAATACCC-CCACTTGTAAAATTACCAAAGTACCCCCGATTTACAAAATTACCAAA
* *
32627067 TTACCCTCGATTTATA
65 ATACCCTCAATTTATA
* *
32627083 AAATTATTGAAATACCCC
1 AAATTACTAAAATACCCC
32627101 TATAGGATAG
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 18 0.22
81 62 0.77
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (80 bp):
AAATTACTAAAATACCCCCACTTGTAAAATTACCAAAGTACCCCCGATTTACAAAATTACCAAAA
TACCCTCAATTTATA
Found at i:32627121 original size:27 final size:27
Alignment explanation
Indices: 32627091--32627545 Score: 454
Period size: 27 Copynumber: 16.9 Consensus size: 27
32627081 TAAAATTATT
* * *
32627091 GAAATACCCCTATAGGATAGAAATGTC
1 GAAATACCCCTGTAGGGTAGAAATATC
* * *
32627118 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATATC
* *
32627145 GAAATACCCCTATAGGGTAGAATTA-C
1 GAAATACCCCTGTAGGGTAGAAATATC
* *
32627171 TGAAATACCCTTGTAGGGTAGAAATACC
1 -GAAATACCCCTGTAGGGTAGAAATATC
*
32627199 GAAATACCCTTGTAGGGTAGAAATA-C
1 GAAATACCCCTGTAGGGTAGAAATATC
*
32627225 TGAAATACCCCTGTAGGGTAGAATTA-C
1 -GAAATACCCCTGTAGGGTAGAAATATC
*
32627252 TGAAATACCCCTGTAGGGTAGAATTA-C
1 -GAAATACCCCTGTAGGGTAGAAATATC
* * * *
32627279 CAAATTACCCTTGTAGGGTAGAATTACC
1 GAAA-TACCCCTGTAGGGTAGAAATATC
*
32627307 GAAATACCCCTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATATC
* * *
32627334 GAAATACCCCTGTAGAGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAAATATC
* * *
32627361 GAAATACCTCTATAGGATAGAAATATC
1 GAAATACCCCTGTAGGGTAGAAATATC
* * *
32627388 GAAATACCCTTATAGGGTACAAATATC
1 GAAATACCCCTGTAGGGTAGAAATATC
* *
32627415 GAAATTCCCCTGTAGGGTAGAATTA-C
1 GAAATACCCCTGTAGGGTAGAAATATC
* * * * * *
32627441 TAAAATACCCCTATATGATAGAATTACC
1 -GAAATACCCCTGTAGGGTAGAAATATC
* *
32627469 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATATC
* *
32627496 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAAATATC
* *
32627523 GAGATACCCTTGTAGGGTA-AAAT
1 GAAATACCCCTGTAGGGTAGAAAT
32627546 TACCATTTTT
Statistics
Matches: 370, Mismatches: 51, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
26 9 0.02
27 355 0.96
28 6 0.02
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAAATATC
Found at i:32627549 original size:81 final size:81
Alignment explanation
Indices: 32627091--32627545 Score: 556
Period size: 81 Copynumber: 5.6 Consensus size: 81
32627081 TAAAATTATT
* * * **
32627091 GAAATACCCCTATAGGATAGAAATGTCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCT
* * *
32627156 ATAGGGTAGAATTACT
66 GTAGGGTAGAAATACC
* * * *
32627172 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCT
* *
32627237 GTAGGGTAGAATTACT
66 GTAGGGTAGAAATACC
* *
32627253 GAAATACCCCTGTAGGGTAGAATTACC-AAATTACCCTTGTAGGGTAGAATTACCGAAATACCCC
1 GAAATACCCCTGTAGGGTAGAATTACCGAAA-TACCCTTATAGGGTAGAAATACCGAAATACCCC
32627317 TGTAGGGTAGAAATACC
65 TGTAGGGTAGAAATACC
* ** * * *
32627334 GAAATACCCCTGTAGAGTAGAATTATTGAAATA-CCTCTATAGGATAGAAATATCGAAATACCCT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCT-TATAGGGTAGAAATACCGAAATACCCC
* * *
32627398 TATAGGGTACAAATATC
65 TGTAGGGTAGAAATACC
* ** * * * * *
32627415 GAAATTCCCCTGTAGGGTAGAATTACTAAAATACCCCTATATGATAGAATTACCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCT
32627480 GTAGGGTAGAAATACC
66 GTAGGGTAGAAATACC
* *
32627496 GAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTAGGGTA-AAAT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAAT
32627546 TACCATTTTT
Statistics
Matches: 325, Mismatches: 45, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
80 9 0.03
81 311 0.96
82 5 0.02
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (81 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCT
GTAGGGTAGAAATACC
Found at i:32627989 original size:22 final size:22
Alignment explanation
Indices: 32627937--32628001 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32627927 GCCAATTATT
* *
32627937 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
32627959 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
32627981 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
32628002 ACATATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:32628340 original size:6 final size:6
Alignment explanation
Indices: 32628331--32628409 Score: 54
Period size: 6 Copynumber: 12.8 Consensus size: 6
32628321 TTGCATTCAC
* *
32628331 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
32628381 ATTTTG ATTCTA ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
32628410 AGTTCTAATA
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
5 3 0.05
6 45 0.80
7 6 0.11
8 2 0.04
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:32628362 original size:25 final size:25
Alignment explanation
Indices: 32628334--32628397 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
32628324 CATTCACATT
*
32628334 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
32628359 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
* *
32628384 TTGATTCTAATTCT
1 CTGATTCTGATTCT
32628398 CATTTTGATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:32628404 original size:18 final size:18
Alignment explanation
Indices: 32628381--32628415 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32628371 CTGTCACCTG
32628381 ATTTTGATTCTAATTCTC
1 ATTTTGATTCTAATTCTC
*
32628399 ATTTTGATTCTAGTTCT
1 ATTTTGATTCTAATTCT
32628416 AATAATGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.14, G:0.09, T:0.57
Consensus pattern (18 bp):
ATTTTGATTCTAATTCTC
Found at i:32632161 original size:17 final size:17
Alignment explanation
Indices: 32632135--32632168 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32632125 TATATAATTG
*
32632135 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
32632152 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
32632169 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:32633345 original size:24 final size:24
Alignment explanation
Indices: 32633254--32633339 Score: 147
Period size: 24 Copynumber: 3.6 Consensus size: 24
32633244 GAAATGATTT
*
32633254 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGTA
32633278 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
32633302 TGGCACTATGTGTGC-AGATTTGTA
1 TGGCACTATGTGTGCGA-ATTTGTA
32633326 TGGCACTATGTGTG
1 TGGCACTATGTGTG
32633340 GGGATTCGAA
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
23 1 0.02
24 59 0.98
ACGTcount: A:0.21, C:0.13, G:0.30, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGTA
Found at i:32633360 original size:48 final size:48
Alignment explanation
Indices: 32633257--32633387 Score: 126
Period size: 48 Copynumber: 2.7 Consensus size: 48
32633247 ATGATTTTGG
* * *
32633257 CACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTTGTATGG
1 CACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTCGAATGC
* * *
32633305 CACTATGTGTGC-AGATTTGTATGGCACTATGTGTGGGGATTCGAATGTC
1 CACTATGTGTGCGA-ATTTGAATGGCACTATGTGTGCGAATTCGAATG-C
* *
32633354 CA-TATGTATGTGAATTACT-AA-GGCACTATGTGTG
1 CACTATGTGTGCGAATT--TGAATGGCACTATGTGTG
32633388 TAACACACCG
Statistics
Matches: 69, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
47 1 0.01
48 63 0.91
49 4 0.06
50 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.28, T:0.35
Consensus pattern (48 bp):
CACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTCGAATGC
Found at i:32633379 original size:72 final size:72
Alignment explanation
Indices: 32633254--32633387 Score: 171
Period size: 72 Copynumber: 1.9 Consensus size: 72
32633244 GAAATGATTT
* * * ** *
32633254 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTTGTATGGCACTATGTGTGCAG
1 TGGCACTATGTGTGCGAATTCGAATGCCACTATGTATGCGAATTACTAAGGCACTATGTGTGCAG
32633319 ATTTGTA
66 ATTTGTA
* * *
32633326 TGGCACTATGTGTGGGGATTCGAATGTCCA-TATGTATGTGAATTACTAAGGCACTATGTGTG
1 TGGCACTATGTGTGCGAATTCGAATG-CCACTATGTATGCGAATTACTAAGGCACTATGTGTG
32633388 TAACACACCG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
72 50 0.96
73 2 0.04
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.35
Consensus pattern (72 bp):
TGGCACTATGTGTGCGAATTCGAATGCCACTATGTATGCGAATTACTAAGGCACTATGTGTGCAG
ATTTGTA
Found at i:32634992 original size:28 final size:28
Alignment explanation
Indices: 32634929--32635082 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
32634919 ATATTAAGTC
* *
32634929 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
32634956 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
32634984 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
32635012 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
32635040 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
32635068 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32635083 GTACAATTTA
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 102 0.82
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:32643188 original size:28 final size:28
Alignment explanation
Indices: 32643125--32643275 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
32643115 ATATTAAGTC
*
32643125 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32643152 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32643180 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32643208 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32643236 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32643265 CGCACACTTAG
1 CGCACACTTAG
32643276 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32647171 original size:26 final size:26
Alignment explanation
Indices: 32647101--32647173 Score: 110
Period size: 27 Copynumber: 2.8 Consensus size: 26
32647091 AGCATGGCTG
* *
32647101 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
32647127 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
32647154 CCAGAACAGATAATGTGGCA
1 CCAGAACAGATATTGTGGCA
32647174 AAGCAACTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 19 0.44
27 24 0.56
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:32647367 original size:22 final size:22
Alignment explanation
Indices: 32647339--32647403 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
32647329 GCAAATACGT
*
32647339 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
32647361 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
32647383 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
32647404 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:32648345 original size:27 final size:27
Alignment explanation
Indices: 32647826--32648337 Score: 637
Period size: 27 Copynumber: 19.0 Consensus size: 27
32647816 GGGGCAAAAT
* * * * *
32647826 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32647853 AGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32647880 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32647907 AGTAATTCTATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
32647934 AGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32647961 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32647988 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32648015 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32648042 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32648069 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32648096 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32648123 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32648150 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32648177 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
32648204 AGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * **
32648231 GATATTTCTACCCTACAACGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
32648258 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
32648285 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
32648312 GATAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
32648338 TAAAAATTTT
Statistics
Matches: 417, Mismatches: 68, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 417 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:32648360 original size:27 final size:27
Alignment explanation
Indices: 32648330--32648499 Score: 135
Period size: 27 Copynumber: 6.3 Consensus size: 27
32648320 TACCCTACAG
* *
32648330 GGGTATTTTAAAAATTTTGTAAATCGA
1 GGGTATTTTAATAATTTTGCAAATCGA
***** * * *
32648357 GGGTAAAACGATAATTCTGTAAATCGG
1 GGGTATTTTAATAATTTTGCAAATCGA
* * * * *
32648384 GGGTACTTTGATAATTTTACAAGTCAA
1 GGGTATTTTAATAATTTTGCAAATCGA
*
32648411 GGGTATTTTAATAATTTTACAAATCGA
1 GGGTATTTTAATAATTTTGCAAATCGA
32648438 GGGTATTTTAATAATTTTGCAAA-CTGA
1 GGGTATTTTAATAATTTTGCAAATC-GA
*** *
32648465 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTTAATAATTTTGCAAATCGA
*
32648492 GGATATTT
1 GGGTATTT
32648500 GGGTAATTTT
Statistics
Matches: 113, Mismatches: 28, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
26 1 0.01
27 111 0.98
28 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTTAATAATTTTGCAAATCGA
Found at i:32648504 original size:27 final size:27
Alignment explanation
Indices: 32648377--32648540 Score: 159
Period size: 27 Copynumber: 6.1 Consensus size: 27
32648367 ATAATTCTGT
* * *
32648377 AAATCGGGGGTACTTTGATAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
* * **
32648404 AAGTCAAGGGTATTTTAATAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
** *
32648431 AAATCGAGGGTATTTTAATAATTTTGC
1 AAATCGAGGGTATTTTGGTAATTTTAC
*
32648458 AAA-CTGAGGGTATTTCGGTAATTTTAC
1 AAATC-GAGGGTATTTTGGTAATTTTAC
* * *
32648485 AAATCGAGGATATTTGGGTAATTTTAT
1 AAATCGAGGGTATTTTGGTAATTTTAC
* * *
32648512 AAACCGGGGGTACTTTGGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
32648539 AA
1 AA
32648541 CTAGGGGTAT
Statistics
Matches: 114, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 112 0.98
28 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
AAATCGAGGGTATTTTGGTAATTTTAC
Found at i:32648507 original size:81 final size:80
Alignment explanation
Indices: 32648395--32648553 Score: 176
Period size: 81 Copynumber: 2.0 Consensus size: 80
32648385 GGTACTTTGA
* * * * * *
32648395 TAATTTTACAAGTCAAGGGTATTTTAATAATTTTACAAATCGAGGGTATTTTAATAATTTTGCAA
1 TAATTTTACAAATCAAGGATATTTGAATAATTTTACAAACCGAGGGTACTTTAATAATTTTAC-A
32648460 ACT-GAGGGTATTTCGG
65 ACTAG-GGGTATTTCGG
* ** * * **
32648476 TAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAA
1 TAATTTTACAAATCAAGGATATTTGAATAATTTTACAAACCGAGGGTACTTTAATAATTTTACAA
32648541 CTAGGGGTATTTC
66 CTAGGGGTATTTC
32648554 ATTAATTTGG
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
80 13 0.20
81 51 0.80
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
TAATTTTACAAATCAAGGATATTTGAATAATTTTACAAACCGAGGGTACTTTAATAATTTTACAA
CTAGGGGTATTTCGG
Found at i:32648547 original size:27 final size:26
Alignment explanation
Indices: 32648384--32648561 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 26
32648374 TGTAAATCGG
* *
32648384 GGGTACTTTGATAATTTTACAAGTCAA
1 GGGTA-TTTGATAATTTTACAACTCGA
* *
32648411 GGGTATTTTAATAATTTTACAAATCGA
1 GGGTA-TTTGATAATTTTACAACTCGA
* *
32648438 GGGTATTTTAATAATTTTGCAAACT-GA
1 GGGTA-TTTGATAATTTTAC-AACTCGA
* *
32648465 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTT-GATAATTTTACAACTCGA
* * * *
32648492 GGATATTTGGGTAATTTTATAAAC-CGG
1 GGGTATTT-GATAATTTTA-CAACTCGA
* *
32648519 GGGTACTTTGGTAATTTTACAACTAG-
1 GGGTA-TTTGATAATTTTACAACTCGA
*
32648545 GGGTATTTCATTAATTT
1 GGGTATTTGA-TAATTT
32648562 GGTAAACTAA
Statistics
Matches: 124, Mismatches: 20, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
25 3 0.02
26 20 0.16
27 93 0.75
28 8 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
GGGTATTTGATAATTTTACAACTCGA
Found at i:32651426 original size:22 final size:23
Alignment explanation
Indices: 32651401--32651446 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
32651391 CAACCAAATC
32651401 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
32651423 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
32651446 A
1 A
32651447 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:32651452 original size:23 final size:23
Alignment explanation
Indices: 32651408--32651452 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
32651398 ATCAATTCAA
*
32651408 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
32651431 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
32651453 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:32655252 original size:20 final size:21
Alignment explanation
Indices: 32655227--32655266 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32655217 CTCTTGAAAC
32655227 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
32655247 AGGGCAACATGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
32655267 TCATGCCGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:32655943 original size:46 final size:45
Alignment explanation
Indices: 32655835--32656000 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 45
32655825 AAGCTGACGC
* * * *
32655835 CATGTCCCAGACAGGTCTTACACTAGCT-TGTATCTCACGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTG--CCTCA--ATGCTGATG
32655883 CATGTCCCAGACATGTCTTACACTAGCTCTCGCCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-GCCTCAATGCTGATG
* * **
32655929 CATGTCCCAGACATGTCTTACACTGGCTCT-CATACTGTGGCTGAT-
1 CATGTCCCAGACATGTCTTACACTAGCTCTGCCT-CAAT-GCTGATG
*
32655974 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
32656001 ACACAAATGA
Statistics
Matches: 104, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
44 2 0.02
45 27 0.26
46 42 0.40
48 31 0.30
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTGCCTCAATGCTGATG
Found at i:32663632 original size:46 final size:45
Alignment explanation
Indices: 32663570--32663696 Score: 168
Period size: 46 Copynumber: 2.8 Consensus size: 45
32663560 TATCTCGCGA
*
32663570 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGCTTCAA-T
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCT--CAT-AAGT
* *
32663617 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGT
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAA-GT
*
32663662 GGCTGATGCATGTCCCAAACATGTCTTACACTAGC
1 GGCCGATGCATGTCCCAAACATGTCTTACACTAGC
32663697 ACACAAATGA
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
43 2 0.03
44 2 0.03
45 1 0.01
46 66 0.93
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAAGT
Found at i:32671741 original size:47 final size:47
Alignment explanation
Indices: 32671687--32671880 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
32671677 TTAGGATTTT
** * *
32671687 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32671734 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32671781 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
32671828 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32671875 ATGTGA
1 ATGTGA
32671881 AATATATATA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:32671787 original size:22 final size:22
Alignment explanation
Indices: 32671716--32671787 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
32671706 GTATATATGA
32671716 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
32671738 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
32671763 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
32671785 GAT
1 GAT
32671788 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:32671836 original size:25 final size:25
Alignment explanation
Indices: 32671761--32671836 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
32671751 ATGCATATAT
32671761 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
32671786 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
32671808 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
32671833 GTGA
1 GTGA
32671837 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:32680173 original size:50 final size:50
Alignment explanation
Indices: 32680068--32680198 Score: 163
Period size: 50 Copynumber: 2.6 Consensus size: 50
32680058 ATTTATAAGT
*
32680068 CATGCATTATGTAACTCTCATGATTAGTTAAGTTTGCATCACAAATAATGA
1 CATGCATTATGTAACTCTCATG-TTAGTTAAGATTGCATCACAAATAATGA
* * ** **
32680119 CATGCATTATGTAACTCTCATGTTAGTTAAGATTGCATTATAAATTTTTC
1 CATGCATTATGTAACTCTCATGTTAGTTAAGATTGCATCACAAATAATGA
* * *
32680169 CATGCATTGTGTAATTCCCATGTTAGTTAA
1 CATGCATTATGTAACTCTCATGTTAGTTAA
32680199 AGTTTGTATC
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
50 48 0.69
51 22 0.31
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (50 bp):
CATGCATTATGTAACTCTCATGTTAGTTAAGATTGCATCACAAATAATGA
Found at i:32692198 original size:40 final size:40
Alignment explanation
Indices: 32692124--32692305 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
32692114 AACCCAAGTA
* * *
32692124 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
32692163 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
32692203 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
32692243 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
32692283 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
32692306 CATTCGAATA
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.09
40 115 0.88
41 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:32698623 original size:29 final size:29
Alignment explanation
Indices: 32698584--32698662 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
32698574 CTTAATAATC
*
32698584 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
32698614 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
32698643 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
32698663 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:32706010 original size:27 final size:27
Alignment explanation
Indices: 32705979--32706156 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32705969 TAAATTGTAC
32705979 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32706006 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32706032 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32706060 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32706088 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32706115 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32706142 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32706157 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32706093 original size:82 final size:81
Alignment explanation
Indices: 32705980--32706135 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32705970 AAATTGTACA
* *
32705980 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32706044 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32706061 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32706126 TGCGAGTTGA
65 TGCGAATTGA
32706136 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32706147 original size:82 final size:81
Alignment explanation
Indices: 32705976--32706156 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32705966 GATTAAATTG
* *
32705976 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32706041 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32706057 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32706121 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32706139 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32706157 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32714132 original size:27 final size:27
Alignment explanation
Indices: 32714101--32714278 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32714091 TAAATTGTAC
32714101 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32714128 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32714154 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32714182 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32714210 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32714237 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32714264 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32714279 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32714215 original size:82 final size:81
Alignment explanation
Indices: 32714102--32714257 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32714092 AAATTGTACA
* *
32714102 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32714166 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32714183 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32714248 TGCGAGTTGA
65 TGCGAATTGA
32714258 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32714269 original size:82 final size:81
Alignment explanation
Indices: 32714098--32714278 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32714088 GATTAAATTG
* *
32714098 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32714163 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32714179 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32714243 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32714261 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32714279 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32719742 original size:11 final size:11
Alignment explanation
Indices: 32719726--32719775 Score: 61
Period size: 11 Copynumber: 4.7 Consensus size: 11
32719716 ATAAATCAAC
*
32719726 TTTTTTTCG-A
1 TTTTTTTTGAA
32719736 TTTTTTTT--A
1 TTTTTTTTGAA
32719745 TTTTTTTTCGAA
1 TTTTTTTT-GAA
32719757 TTTTTTTTGAA
1 TTTTTTTTGAA
32719768 TTTTTTTT
1 TTTTTTTT
32719776 AACTTGTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
9 9 0.25
10 7 0.19
11 11 0.31
12 9 0.25
ACGTcount: A:0.12, C:0.04, G:0.06, T:0.78
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:32720162 original size:14 final size:14
Alignment explanation
Indices: 32720145--32720184 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
32720135 CGAATGGAAT
*
32720145 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
32720159 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
32720173 GATATGAACAAA
1 GGTAGGAACAAA
32720185 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:32721699 original size:46 final size:46
Alignment explanation
Indices: 32721649--32721824 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
32721639 TGGTTGAGCA
32721649 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
32721695 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
*
32721740 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32721788 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32721825 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 6 0.05
43 5 0.05
45 2 0.02
46 60 0.54
47 26 0.23
48 2 0.02
50 4 0.04
51 6 0.05
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32721805 original size:93 final size:93
Alignment explanation
Indices: 32721646--32721815 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
32721636 GGATGGTTGA
* *
32721646 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32721711 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
*
32721739 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32721804 TGAGTCCGAGTT
66 TGAGTCCGAGTT
32721816 CGCTTATGGG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:32725793 original size:47 final size:47
Alignment explanation
Indices: 32725732--32725853 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
32725722 GCATTGGCAC
32725732 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACAT-GACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATAG-CATTTGG
*
32725779 TAAGACAAGTATACCATGTAAGACCATGTTTGGAACATAGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGG
* *
32725826 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
32725854 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
47 69 0.99
48 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATAGCATTTGG
Found at i:32725961 original size:55 final size:54
Alignment explanation
Indices: 32725826--32725990 Score: 190
Period size: 54 Copynumber: 3.1 Consensus size: 54
32725816 TAGCATTTGG
* * *
32725826 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGAAAAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
** * *
32725880 TAAGTCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTA
1 TAAGAAAAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTA
*** * *
32725935 TAAGGAAAAGGTCCT-ATGTAAGACCATGCCAAGGCATGCCATTGGTGAGTTC-A
1 TAA-GAAAAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
32725988 TAA
1 TAA
32725991 AGCAAGGATA
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
53 4 0.04
54 46 0.49
55 38 0.40
56 6 0.06
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (54 bp):
TAAGAAAAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTA
Found at i:32731187 original size:85 final size:85
Alignment explanation
Indices: 32731044--32731222 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
32731034 GGCCGGCCAT
32731044 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
32731109 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
32731129 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATGAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
32731194 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
32731214 GGGCATGGG
1 GAGCATGGG
32731223 AAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:32733459 original size:47 final size:47
Alignment explanation
Indices: 32733408--32733888 Score: 701
Period size: 47 Copynumber: 10.1 Consensus size: 47
32733398 TTAGGATTTT
*
32733408 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
32733455 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
32733506 AGGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
32733553 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
32733600 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
32733651 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
32733698 ATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
32733745 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGGATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
32733792 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
32733839 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
32733886 ATG
1 ATG
32733889 CGAAACATGT
Statistics
Matches: 394, Mismatches: 32, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
47 305 0.77
49 4 0.01
51 85 0.22
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:32733558 original size:145 final size:145
Alignment explanation
Indices: 32733408--32733888 Score: 772
Period size: 145 Copynumber: 3.3 Consensus size: 145
32733398 TTAGGATTTT
*
32733408 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
32733473 CGTATATATATGTGTGATAAGGCCGAATGGCCAAGGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
32733538 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
* *
32733553 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
32733618 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
32733683 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
* *
32733698 ATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAA--
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*** * * * *
32733761 C--ATGCGTATGTGTGATAAGGCCGGATGGCCAATGTGATGAATGTGAACATGCATATATGAGAT
66 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
32733824 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
** * * *
32733839 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
32733889 CGAAACATGT
Statistics
Matches: 316, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
141 113 0.36
143 1 0.00
145 202 0.64
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (145 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
AAGGCCGAATGGCCA
Found at i:32733655 original size:24 final size:24
Alignment explanation
Indices: 32733627--32733702 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
32733617 CCGTATATAT
32733627 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
32733651 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
32733674 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
32733698 ATGTG
1 ATGTG
32733703 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:32733775 original size:25 final size:25
Alignment explanation
Indices: 32733699--32733776 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
32733689 GAATGGCCAA
32733699 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
32733724 CGTGAT-AAGGCTG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
32733746 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
32733771 TGTGAT
1 TGTGAT
32733777 AAGGCCGGAT
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.28, C:0.10, G:0.32, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:32733928 original size:46 final size:46
Alignment explanation
Indices: 32733862--32733952 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
32733852 GAACATGAAT
* * *
32733862 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
32733908 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
32733953 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Done.