Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 105 of 253
Found at i:32734240 original size:37 final size:37
Alignment explanation
Indices: 32734098--32734239 Score: 230
Period size: 37 Copynumber: 3.8 Consensus size: 37
32734088 AATATATTCT
32734098 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
32734135 GGGTAAGATCCGATGACTACGTGTGGAGATTATGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
32734172 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* * *
32734209 GGGTAAGACCCGATAACTTCATGTGGAGATT
1 GGGTAAGACCCGATGACTACGTGTGGAGATT
32734240 TCGTCTGAGC
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.27
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:32741877 original size:73 final size:75
Alignment explanation
Indices: 32741780--32741956 Score: 236
Period size: 73 Copynumber: 2.3 Consensus size: 75
32741770 AGCCCGGTTA
* * *
32741780 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-CTTATAGTAACTCGCA-CAATGCTTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGATT-TAGTAACTCGCACCAATGCCTTCGG
32741843 GACTTAG-CC-T
65 G-CTTAGCCCAT
32741853 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCACCAATGCCTTCGG
32741918 GCTTAGCCCGGAAT
65 GCTTAGCCC---AT
*
32741932 TAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
32741957 ATCTTAGTCC
Statistics
Matches: 92, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
73 34 0.37
74 17 0.18
75 16 0.17
79 25 0.27
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (75 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGATTTAGTAACTCGCACCAATGCCTTCGGG
CTTAGCCCAT
Found at i:32741943 original size:113 final size:114
Alignment explanation
Indices: 32741752--32741956 Score: 299
Period size: 113 Copynumber: 1.8 Consensus size: 114
32741742 GCTACTCGTT
* *
32741752 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCCT
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCCG
* *
32741817 TATAGTAACTCGCAC-AATGCTTTCGGGACTTAGCCTTAGTAACTCGCA
66 AATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCTTAGTAACTCGCA
* * *
32741865 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCC
*
32741928 GAATTAGTATCTCGCACAAATGCCTTCGG
65 GAA-TAGTAACTCGCACAAATGCCTTCGG
32741957 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
112 9 0.11
113 60 0.74
114 12 0.15
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (114 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCCG
AATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCTTAGTAACTCGCA
Found at i:32742009 original size:40 final size:40
Alignment explanation
Indices: 32741752--32742009 Score: 295
Period size: 40 Copynumber: 6.7 Consensus size: 40
32741742 GCTACTCGTT
* *
32741752 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
**
32741792 CAAATGCCTTCGGGACTTAGCCC-CTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
32741831 C-AATGCTTTCGGGACTTAG-CC---T-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32741865 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32741905 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
32741944 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
32741985 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32742010 CATCATTCGA
Statistics
Matches: 190, Mismatches: 16, Indels: 24
0.83 0.07 0.10
Matches are distributed among these distances:
34 13 0.07
35 17 0.09
36 2 0.01
37 2 0.01
38 19 0.10
39 48 0.25
40 77 0.41
41 12 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:32750413 original size:47 final size:47
Alignment explanation
Indices: 32750344--32750668 Score: 497
Period size: 47 Copynumber: 6.7 Consensus size: 47
32750334 CCCTTCGGGA
* *
32750344 CTTATCACATTTATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32750391 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32750438 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
32750487 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32750534 CTTATCACATATATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32750585 CTTATCACATATATATACACTTTCACATTCACCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32750634 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
32750669 AGAATCCTAA
Statistics
Matches: 258, Mismatches: 14, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
47 124 0.48
49 89 0.34
51 45 0.17
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32750506 original size:96 final size:96
Alignment explanation
Indices: 32750344--32750668 Score: 505
Period size: 96 Copynumber: 3.4 Consensus size: 96
32750334 CCCTTCGGGA
*
32750344 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32750407 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
32750438 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32750503 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
32750534 CTTATCACATATATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATAT
* * *
32750599 ATACACTTTCACATTCACCACATTGGCCATTCGGC
62 ATACACTTTCACATTCATCACATCGGCCATTAGGC
32750634 CTTATCAC--ATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATATACACTTTCACATTCATCACAT
32750669 AGAATCCTAA
Statistics
Matches: 211, Mismatches: 14, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
94 10 0.05
95 1 0.00
96 112 0.53
98 45 0.21
100 43 0.20
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32750607 original size:147 final size:143
Alignment explanation
Indices: 32750344--32750668 Score: 560
Period size: 147 Copynumber: 2.2 Consensus size: 143
32750334 CCCTTCGGGA
* *
32750344 CTTATCACATTTATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
32750409 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGACACTTTCACATTCACCACA
32750474 TTGGCCATTCGGC
131 TTGGCCATTCGGC
*
32750487 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATAT
* *
32750552 ACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAC
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGACACTTTCACATTCAC
32750617 CACATTGGCCATTCGGC
127 CACATTGGCCATTCGGC
32750634 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
32750669 AGAATCCTAA
Statistics
Matches: 171, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
143 52 0.30
147 119 0.70
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGACACTTTCACATTCACCACA
TTGGCCATTCGGC
Found at i:32754293 original size:85 final size:85
Alignment explanation
Indices: 32754164--32754342 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
32754154 TATTTTATTG
*
32754164 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
32754229 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
32754249 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTGTGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
32754314 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
32754334 CCCATGCTC
1 CCCATGCTC
32754343 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:32755153 original size:40 final size:40
Alignment explanation
Indices: 32755116--32755337 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 40
32755106 GCTACTCGTT
* *
32755116 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
32755156 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
32755196 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* * *
32755236 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
32755275 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
32755316 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
32755338 AGACATCATT
Statistics
Matches: 155, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.02
39 28 0.18
40 109 0.70
41 15 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:32755294 original size:119 final size:120
Alignment explanation
Indices: 32755118--32755340 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
32755108 TACTCGTTCA
* * *
32755118 AATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGTT
1 AATGCCTTCGAGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGGACTTAGCCCGGAT
*
32755183 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
* * * *
32755238 AATGCCTTCG-GGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCC-TTCGGATCTTAGTCCGG
1 AATGCCTTCGAGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTTCGGA-CTTAGCCCGG
* * *
32755300 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCAGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCAGA
32755341 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 6 0.07
119 65 0.73
120 18 0.20
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGAGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
Found at i:32760574 original size:12 final size:12
Alignment explanation
Indices: 32760557--32760601 Score: 72
Period size: 12 Copynumber: 3.7 Consensus size: 12
32760547 TTGTAGATTC
*
32760557 AAAAAAAATCGA
1 AAAAAAAATTGA
32760569 AAAAAAAATTGAA
1 AAAAAAAATTG-A
32760582 AAAAAAAATTGA
1 AAAAAAAATTGA
32760594 AAAAAAAA
1 AAAAAAAA
32760602 ATTGCATACG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 19 0.61
13 12 0.39
ACGTcount: A:0.80, C:0.02, G:0.07, T:0.11
Consensus pattern (12 bp):
AAAAAAAATTGA
Found at i:32760575 original size:13 final size:13
Alignment explanation
Indices: 32760557--32760605 Score: 82
Period size: 13 Copynumber: 3.8 Consensus size: 13
32760547 TTGTAGATTC
*
32760557 AAAAAAAATCG-A
1 AAAAAAAATTGAA
32760569 AAAAAAAATTGAA
1 AAAAAAAATTGAA
32760582 AAAAAAAATTGAA
1 AAAAAAAATTGAA
32760595 AAAAAAAATTG
1 AAAAAAAATTG
32760606 CATACGGTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
12 10 0.29
13 25 0.71
ACGTcount: A:0.76, C:0.02, G:0.08, T:0.14
Consensus pattern (13 bp):
AAAAAAAATTGAA
Found at i:32762866 original size:17 final size:18
Alignment explanation
Indices: 32762827--32762868 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
32762817 AAGAAGAAAA
32762827 ACAAAA-AGATGAGTGAT
1 ACAAAAGAGATGAGTGAT
*
32762844 AAAAAAGAGA-GAGTGAT
1 ACAAAAGAGATGAGTGAT
*
32762861 TCAAAAGA
1 ACAAAAGA
32762869 AAAAGAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.24, T:0.14
Consensus pattern (18 bp):
ACAAAAGAGATGAGTGAT
Found at i:32769000 original size:20 final size:21
Alignment explanation
Indices: 32768961--32769000 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32768951 GAATTAATGG
*
32768961 CTACACAGGCGTGTTGCCCTT
1 CTACACAGGCATGTTGCCCTT
*
32768982 CTACACGGGCATG-TGCCCT
1 CTACACAGGCATGTTGCCCT
32769001 GTTCCAGAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (21 bp):
CTACACAGGCATGTTGCCCTT
Found at i:32777811 original size:22 final size:21
Alignment explanation
Indices: 32777778--32777819 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
32777768 TCAAACCTAC
32777778 ACAAGCATGCAAAATTTACACA
1 ACAAGCATGCAAAA-TTACACA
*
32777800 ACAAGGCA-GCAACATTACAC
1 ACAA-GCATGCAAAATTACAC
32777820 CACTATTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 6 0.33
22 9 0.50
23 3 0.17
ACGTcount: A:0.48, C:0.26, G:0.12, T:0.14
Consensus pattern (21 bp):
ACAAGCATGCAAAATTACACA
Found at i:32778434 original size:12 final size:13
Alignment explanation
Indices: 32778419--32778451 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
32778409 GATCTCGATC
32778419 TCTTTTTC-CTTT
1 TCTTTTTCACTTT
32778431 TCTTTTTCACTTT
1 TCTTTTTCACTTT
32778444 T-TTTTTCA
1 TCTTTTTCA
32778452 ATTTCAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (13 bp):
TCTTTTTCACTTT
Found at i:32779488 original size:17 final size:18
Alignment explanation
Indices: 32779461--32779507 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
32779451 AAAATTCAAA
32779461 TTGAATTTTTTTTAT-TT
1 TTGAATTTTTTTTATATT
* *
32779478 TTTATTTTTTTTTATATT
1 TTGAATTTTTTTTATATT
32779496 TTGAATTTTTTT
1 TTGAATTTTTTT
32779508 ACACAACAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (18 bp):
TTGAATTTTTTTTATATT
Found at i:32779508 original size:17 final size:18
Alignment explanation
Indices: 32779461--32779508 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 18
32779451 AAAATTCAAA
32779461 TTGAATTTTTTT-TATTT
1 TTGAATTTTTTTATATTT
* *
32779478 TT-TATTTTTTTTTATATT
1 TTGAATTTTTTTATAT-TT
32779496 TTGAATTTTTTTA
1 TTGAATTTTTTTA
32779509 CACAACAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 8 0.32
17 5 0.20
18 4 0.16
19 8 0.32
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (18 bp):
TTGAATTTTTTTATATTT
Found at i:32781432 original size:46 final size:44
Alignment explanation
Indices: 32781374--32781493 Score: 152
Period size: 46 Copynumber: 2.7 Consensus size: 44
32781364 ATCAAGACAA
* *
32781374 GTGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGAC
1 GTGCCAGTGTAAGACATGTTTGGGACATGCATCAG-CTACGAGAC
*
32781418 GTAAGCCAGTGTAAGACATGTTTGGGACATGCATCAGCTACGAGAT
1 GT--GCCAGTGTAAGACATGTTTGGGACATGCATCAGCTACGAGAC
* *
32781464 GTGTCAGTGTAAGACCATGTCTGGGACATG
1 GTGCCAGTGTAAGA-CATGTTTGGGACATG
32781494 GCATTAGCAC
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
44 13 0.19
45 16 0.24
46 38 0.57
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (44 bp):
GTGCCAGTGTAAGACATGTTTGGGACATGCATCAGCTACGAGAC
Found at i:32781737 original size:24 final size:25
Alignment explanation
Indices: 32781705--32781757 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 25
32781695 AGTAAGTTTG
32781705 GCTTATGCCACTTGTGTATTATGA-
1 GCTTATGCCACTTGTGTATTATGAT
32781729 GCTTATGCCACTTGTGTATTATGAT
1 GCTTATGCCACTTGTGTATTATGAT
32781754 GCTT
1 GCTT
32781758 GTTGATGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (25 bp):
GCTTATGCCACTTGTGTATTATGAT
Found at i:32787063 original size:30 final size:31
Alignment explanation
Indices: 32786992--32787063 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 31
32786982 CTTTTGTTTC
*
32786992 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCATCTTCTTTTTCAATCTCA
*
32787023 AATTTC-TTTTCGT-TCTCTTTTTCAATCTC-
1 AATTTCTTTTTCATCT-TCTTTTTCAATCTCA
*
32787052 ATTTTCTTTTTC
1 AATTTCTTTTTC
32787064 TTTTTGATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 6 0.17
30 24 0.67
31 6 0.17
ACGTcount: A:0.14, C:0.24, G:0.01, T:0.61
Consensus pattern (31 bp):
AATTTCTTTTTCATCTTCTTTTTCAATCTCA
Found at i:32787157 original size:15 final size:14
Alignment explanation
Indices: 32787137--32787200 Score: 65
Period size: 16 Copynumber: 4.2 Consensus size: 14
32787127 CTCTTGCCTC
32787137 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-TT
*
32787152 TCTTTTTCTTTTTCT
1 TC-TTTTCTTTTTTT
32787167 TCTTTTGCTTTTTCTT
1 TCTTTT-CTTTTT-TT
*
32787183 TCCTTTTCTTTGTTT
1 T-CTTTTCTTTTTTT
32787198 TCT
1 TCT
32787201 CTTTACAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
14 6 0.14
15 14 0.33
16 17 0.40
17 5 0.12
ACGTcount: A:0.02, C:0.19, G:0.03, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:32788141 original size:12 final size:13
Alignment explanation
Indices: 32788115--32788162 Score: 71
Period size: 13 Copynumber: 3.6 Consensus size: 13
32788105 TTCAGATTTT
32788115 TTTTTCTTTTCGAA
1 TTTTT-TTTTCGAA
32788129 TTTTTTTTT-GAA
1 TTTTTTTTTCGAA
32788141 TTTTTTTTTTCGAA
1 -TTTTTTTTTCGAA
32788155 TTTTTTTT
1 TTTTTTTT
32788163 GACTTGTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.09
13 21 0.66
14 8 0.25
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.75
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:32788146 original size:14 final size:14
Alignment explanation
Indices: 32788114--32788162 Score: 75
Period size: 14 Copynumber: 3.6 Consensus size: 14
32788104 GTTCAGATTT
32788114 TTTTTTCTTTTCGAA
1 TTTTTT-TTTTCGAA
32788129 -TTTTTTTTT-GAA
1 TTTTTTTTTTCGAA
32788141 TTTTTTTTTTCGAA
1 TTTTTTTTTTCGAA
32788155 TTTTTTTT
1 TTTTTTTT
32788163 GACTTGTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.09
13 13 0.41
14 16 0.50
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.76
Consensus pattern (14 bp):
TTTTTTTTTTCGAA
Found at i:32791697 original size:15 final size:16
Alignment explanation
Indices: 32791671--32791701 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
32791661 TCTCTCTTAC
32791671 TTTTAGATCATATATA
1 TTTTAGATCATATATA
32791687 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
32791702 AGACAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:32794541 original size:18 final size:18
Alignment explanation
Indices: 32794518--32794572 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
32794508 TGAGAAAGGC
32794518 TGAGAAAGAAAAGGGAAT
1 TGAGAAAGAAAAGGGAAT
*
32794536 TGAGAAAGAAAAAGGAAAT
1 TGAGAAAG-AAAAGGGAAT
* *
32794555 TGGGAAAGAAAACGGAAT
1 TGAGAAAGAAAAGGGAAT
32794573 GGGGGGAGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 16 0.50
19 16 0.50
ACGTcount: A:0.56, C:0.02, G:0.31, T:0.11
Consensus pattern (18 bp):
TGAGAAAGAAAAGGGAAT
Found at i:32794550 original size:19 final size:19
Alignment explanation
Indices: 32794518--32794571 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 19
32794508 TGAGAAAGGC
*
32794518 TGAGAAAG-AAAAGGGAAT
1 TGAGAAAGAAAAAGGAAAT
32794536 TGAGAAAGAAAAAGGAAAT
1 TGAGAAAGAAAAAGGAAAT
* *
32794555 TGGGAAAGAAAACGGAA
1 TGAGAAAGAAAAAGGAA
32794572 TGGGGGGAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
18 8 0.25
19 24 0.75
ACGTcount: A:0.57, C:0.02, G:0.31, T:0.09
Consensus pattern (19 bp):
TGAGAAAGAAAAAGGAAAT
Found at i:32794635 original size:18 final size:18
Alignment explanation
Indices: 32794612--32794648 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32794602 GATTAGTTGA
*
32794612 GAAAGAAAATGGAATTGG
1 GAAAGAAAAGGGAATTGG
*
32794630 GAAAGAAGAGGGAATTGG
1 GAAAGAAAAGGGAATTGG
32794648 G
1 G
32794649 GGGAGAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.41, T:0.14
Consensus pattern (18 bp):
GAAAGAAAAGGGAATTGG
Found at i:32795335 original size:22 final size:22
Alignment explanation
Indices: 32795310--32795353 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
32795300 AACCATAAAT
32795310 CATAAACCATAATCCCTAAACC
1 CATAAACCATAATCCCTAAACC
* *
32795332 CATAATCCATAATCCGTAAACC
1 CATAAACCATAATCCCTAAACC
32795354 TTAAACCCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.34, G:0.02, T:0.20
Consensus pattern (22 bp):
CATAAACCATAATCCCTAAACC
Found at i:32795336 original size:15 final size:14
Alignment explanation
Indices: 32795263--32795339 Score: 52
Period size: 14 Copynumber: 5.4 Consensus size: 14
32795253 CCCTAACCTT
32795263 TAATCCCTAACACC-
1 TAATCCCTAA-ACCA
* * *
32795277 TGATCCTTAAACCC
1 TAATCCCTAAACCA
*
32795291 CAA-CCCTTAAACCA
1 TAATCCC-TAAACCA
*
32795305 TAAAT-CATAAACCA
1 T-AATCCCTAAACCA
32795319 TAATCCCTAAACCCA
1 TAATCCCTAAA-CCA
32795334 TAATCC
1 TAATCC
32795340 ATAATCCGTA
Statistics
Matches: 48, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
13 8 0.17
14 28 0.58
15 12 0.25
ACGTcount: A:0.40, C:0.36, G:0.01, T:0.22
Consensus pattern (14 bp):
TAATCCCTAAACCA
Found at i:32795342 original size:36 final size:36
Alignment explanation
Indices: 32795284--32795366 Score: 89
Period size: 36 Copynumber: 2.3 Consensus size: 36
32795274 ACCTGATCCT
* *
32795284 TAAACCC-CAACCCTTAAACCATAAAT-CATAAACCA
1 TAAACCCTAAACCCATAAACCAT-AATCCATAAACCA
* * * *
32795319 TAATCCCTAAACCCATAATCCATAATCCGTAAACCT
1 TAAACCCTAAACCCATAAACCATAATCCATAAACCA
32795355 TAAACCCTAAAC
1 TAAACCCTAAAC
32795367 TATAATGATA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
35 9 0.23
36 30 0.77
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (36 bp):
TAAACCCTAAACCCATAAACCATAATCCATAAACCA
Found at i:32795723 original size:40 final size:40
Alignment explanation
Indices: 32795679--32795998 Score: 246
Period size: 40 Copynumber: 8.1 Consensus size: 40
32795669 TTTTGTGGTA
*
32795679 TTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
* * * * *
32795719 TTTTTTAAAAATCGCCGCTAATGCTCAATCTATAGCTGCA
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
*
32795759 TTTTTCAAAAAGCGCCGCTAATGC-C-A-CTA-A--AGC-
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
*** * * ** * * * * *
32795792 -TCAACATAAAA-CGACGGC-ATTGTACTTAATTTTTTTGTGGCA
1 TTTTTCA-AAAAGCG-CCGCTAATG--CTCGA-TCTATAGCGGCG
* * * * *
32795834 TTTTTCAAAAAGCACCACTAATGGTCAACCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
* ***
32795874 TTTTTCAGAAAGCGCCGCTAATGCTCGATCTATAGCTATG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
* * *
32795914 TTTTTCAAAAAGTGCTGCTAATGCTCGATCTATAGCGGTG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
32795954 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
32795994 TTTTT
1 TTTTT
32795999 ATCCAAACGC
Statistics
Matches: 216, Mismatches: 49, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
32 8 0.04
33 7 0.03
34 3 0.01
36 2 0.01
37 3 0.01
38 2 0.01
39 1 0.00
40 172 0.80
41 5 0.02
42 6 0.03
43 7 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (40 bp):
TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCG
Found at i:32799593 original size:42 final size:42
Alignment explanation
Indices: 32799528--32799639 Score: 102
Period size: 43 Copynumber: 2.6 Consensus size: 42
32799518 GACTTATGGT
* * * * *
32799528 TTACGTGTAAGATCATGTTTGGGACATCGACATCG-TATTTGA
1 TTACATGTAAGACCACGTCTGGGACAT-GACATCGATATTCGA
* * * *
32799570 TTTCGTGTAAGACC-CTTTCTGGGACAGTGGCATCGATATTCGA
1 TTACATGTAAGACCAC-GTCTGGGACA-TGACATCGATATTCGA
32799613 TTACATGTAAGACCACGTCTGGGACAT
1 TTACATGTAAGACCACGTCTGGGACAT
32799640 TGGCATTGTA
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
42 27 0.48
43 28 0.50
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACATGACATCGATATTCGA
Found at i:32800893 original size:17 final size:17
Alignment explanation
Indices: 32800871--32800905 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32800861 GTGTGTGACC
*
32800871 TGTTTAACTTTGAAAAA
1 TGTTTAACTTTCAAAAA
*
32800888 TGTTTAAGTTTCAAAAA
1 TGTTTAACTTTCAAAAA
32800905 T
1 T
32800906 TTTGTATGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (17 bp):
TGTTTAACTTTCAAAAA
Found at i:32817076 original size:55 final size:54
Alignment explanation
Indices: 32816978--32817156 Score: 177
Period size: 55 Copynumber: 3.3 Consensus size: 54
32816968 GGATGTTACA
* * * *
32816978 GACATAGTCTTACATG-GTATCCTTG-CTT-TATGAACTCACCAATGGCATGCCTT
1 GACATGGTCTTACATGAGGA-CCTTGACTTATA-GAACTCATCAATGCCATGCCTT
* ** *
32817031 GCCATGGTCTTACAT-AGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTT
1 GACATGGTCTTACATGAGGACC-TTGACTTATAG-AACTCATCAATGCCATGCCTT
*** *
32817086 GACATGGTCTTACATGATTTCCTTGACTTATAGAACTTATCAATGCCATGCCTT
1 GACATGGTCTTACATGAGGACCTTGACTTATAGAACTCATCAATGCCATGCCTT
*
32817140 GGCATGGTCTTACATGA
1 GACATGGTCTTACATGA
32817157 TATCCTTATC
Statistics
Matches: 104, Mismatches: 16, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 17 0.16
54 39 0.38
55 43 0.41
56 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (54 bp):
GACATGGTCTTACATGAGGACCTTGACTTATAGAACTCATCAATGCCATGCCTT
Found at i:32817149 original size:54 final size:53
Alignment explanation
Indices: 32816978--32817163 Score: 198
Period size: 54 Copynumber: 3.5 Consensus size: 53
32816968 GGATGTTACA
* * * *
32816978 GACATAGTCTTACATGGTATCCTTGCTT-TATGAACTCACCAATGGCATGCCTT
1 GACATGGTCTTACATGATATCCTTGCTTATA-GAACTCATCAATGCCATGCCTT
* * * *
32817031 GCCATGGTCTTACAT-AGGA-CCTTTTCCTTATAGTAACTCATCAATGCCATGTCTT
1 GACATGGTCTTACATGA-TATCC--TTGCTTATAG-AACTCATCAATGCCATGCCTT
* *
32817086 GACATGGTCTTACATGATTTCCTTGACTTATAGAACTTATCAATGCCATGCCTT
1 GACATGGTCTTACATGATATCCTTG-CTTATAGAACTCATCAATGCCATGCCTT
*
32817140 GGCATGGTCTTACATGATATCCTT
1 GACATGGTCTTACATGATATCCTT
32817164 ATCTTACCAA
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
52 2 0.02
53 14 0.13
54 49 0.45
55 41 0.38
56 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
GACATGGTCTTACATGATATCCTTGCTTATAGAACTCATCAATGCCATGCCTT
Found at i:32817196 original size:47 final size:47
Alignment explanation
Indices: 32817142--32817263 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
32817132 CATGCCTTGG
* * *
32817142 CATGGTCTTACATGATATCCTTATCTTACCAATTG-CTATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTC-ATGTTCCAAA
*
32817189 CATGGTCTTACATGGTATACTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
*
32817236 CATGGTGTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
32817264 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
47 67 0.99
48 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
Found at i:32817483 original size:44 final size:44
Alignment explanation
Indices: 32817400--32817486 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
32817390 GTATTCTTAA
* * *
32817400 CCGTCAATTCCTCCTTAAATGCCATGTTATGAACTTGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTATCAACATGGACTTTT
* *
32817444 CCGTCAATTCTTCCTTAATTGCCATGGTA-CAACCATGGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTATCAA-CATGGACTTT
32817487 GAGATATCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTATCAACATGGACTTTT
Found at i:32818782 original size:19 final size:19
Alignment explanation
Indices: 32818758--32818797 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32818748 AGCTCCCATG
32818758 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
32818777 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
32818796 TA
1 TA
32818798 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:32820466 original size:11 final size:12
Alignment explanation
Indices: 32820450--32820481 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
32820440 TATACAAGTT
32820450 AAAAAAAATTC-
1 AAAAAAAATTCG
32820461 AAAAAAAATTCG
1 AAAAAAAATTCG
32820473 AAAAAAAAT
1 AAAAAAAAT
32820482 AAAAGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.75, C:0.06, G:0.03, T:0.16
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:32820500 original size:10 final size:10
Alignment explanation
Indices: 32820449--32820500 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 10
32820439 TTATACAAGT
*
32820449 TAAAAAAAAT
1 TAAAAAAAAA
*
32820459 TCAAAAAAAAT
1 T-AAAAAAAAA
*
32820470 TCGAAAAAAAA
1 T-AAAAAAAAA
*
32820481 TAAAAGAAAA
1 TAAAAAAAAA
32820491 TAAAAAAAAA
1 TAAAAAAAAA
32820501 GTTGATTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
10 17 0.47
11 19 0.53
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.13
Consensus pattern (10 bp):
TAAAAAAAAA
Found at i:32825740 original size:19 final size:19
Alignment explanation
Indices: 32825716--32825755 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32825706 AGCTCCCATG
32825716 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
32825735 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
32825754 TA
1 TA
32825756 TCAGCTTACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:32828771 original size:52 final size:51
Alignment explanation
Indices: 32828707--32828838 Score: 194
Period size: 50 Copynumber: 2.6 Consensus size: 51
32828697 TGAAAAAAAT
* *
32828707 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAAC-TTAACTAACATGA
* *
32828759 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
* *
32828809 GAGTTACATAATGCATGACTTTATTAAATG
1 GAGTTACATAATGCATGACTTAATTTAATG
32828839 CAAAAGACAT
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
50 34 0.48
51 14 0.20
52 23 0.32
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (51 bp):
GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
Found at i:32831142 original size:56 final size:56
Alignment explanation
Indices: 32831069--32831188 Score: 168
Period size: 56 Copynumber: 2.1 Consensus size: 56
32831059 GTTGGTATCA
* * * *
32831069 ATATGTGACTCCGATATATGTGTATGAGTAAGACCCTGTCTAGGACAGTGGCATCG
1 ATATGTGACTCCGATATATATGTACGAGTAAGACCCTATCCAGGACAGTGGCATCG
* * *
32831125 ATATGTGACTCCGATATATATGTGCGAGTAAGACCCTATCCGGGACAGTGGCATTG
1 ATATGTGACTCCGATATATATGTACGAGTAAGACCCTATCCAGGACAGTGGCATCG
*
32831181 ACATGTGA
1 ATATGTGA
32831189 TTACATGTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (56 bp):
ATATGTGACTCCGATATATATGTACGAGTAAGACCCTATCCAGGACAGTGGCATCG
Found at i:32834960 original size:27 final size:27
Alignment explanation
Indices: 32834930--32835124 Score: 273
Period size: 27 Copynumber: 7.2 Consensus size: 27
32834920 TAACACCCTA
* *
32834930 AGGGCAAAATGGTAATTTTATAAATCG
1 AGGGTAAAATGGTAATTTTGTAAATCG
32834957 AGGGTAAAATGGTAATTTTGTAAATCG
1 AGGGTAAAATGGTAATTTTGTAAATCG
* * *
32834984 AGGGTAAAATAGTAATTCTGTAAATCA
1 AGGGTAAAATGGTAATTTTGTAAATCG
* * *
32835011 AGGGCAAAATGGTAATTTTATAAATTG
1 AGGGTAAAATGGTAATTTTGTAAATCG
*
32835038 AGGGTAAAATGGTAATTTTGTAAATCA
1 AGGGTAAAATGGTAATTTTGTAAATCG
* *
32835065 AGGGTAAAATAGTAATTCTGTAAATCG
1 AGGGTAAAATGGTAATTTTGTAAATCG
* *
32835092 AGGGTAAAACGGTAATTTTATAAATCG
1 AGGGTAAAATGGTAATTTTGTAAATCG
32835119 AGGGTA
1 AGGGTA
32835125 CTTTGGTAAT
Statistics
Matches: 146, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.31
Consensus pattern (27 bp):
AGGGTAAAATGGTAATTTTGTAAATCG
Found at i:32835132 original size:27 final size:27
Alignment explanation
Indices: 32834939--32835297 Score: 222
Period size: 27 Copynumber: 13.3 Consensus size: 27
32834929 AAGGGCAAAA
**
32834939 TGGTAATTTTATAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAATT
* **
32834966 TGGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAATT
* * * * * **
32834993 TAGTAATTCTGTAAATCAAGGGCAAAA
1 TGGTAATTTTATAAATCGAGGGTAATT
* **
32835020 TGGTAATTTTATAAATTGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAATT
* * **
32835047 TGGTAATTTTGTAAATCAAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAATT
* * * **
32835074 TAGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTATAAATCGAGGGTAATT
* *
32835101 CGGTAATTTTATAAATCGAGGGTACTT
1 TGGTAATTTTATAAATCGAGGGTAATT
* * * *
32835128 TGGTAATTTTAGAAGTAGAGGGTATTT
1 TGGTAATTTTATAAATCGAGGGTAATT
* * **
32835155 TAGTAATTTTACAGGTCGAGGGT-ATT
1 TGGTAATTTTATAAATCGAGGGTAATT
** * * *
32835181 TCAATAATTTCACAAATC-AGAGGTATTT
1 T-GGTAATTTTATAAATCGAG-GGTAATT
* * *
32835209 TGGTAATTTTACAAA-CTAGGGGTATTT
1 TGGTAATTTTATAAATCGA-GGGTAATT
* * *
32835236 TGGTAATTTTACAAA-CCAGGGGTATTT
1 TGGTAATTTTATAAATCGA-GGGTAATT
* * *
32835263 TGGTAATTTTATAAACCAAGGGTATTT
1 TGGTAATTTTATAAATCGAGGGTAATT
32835290 TGGTAATT
1 TGGTAATT
32835298 CTACCCTACA
Statistics
Matches: 281, Mismatches: 45, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.02
27 269 0.96
28 6 0.02
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36
Consensus pattern (27 bp):
TGGTAATTTTATAAATCGAGGGTAATT
Found at i:32835137 original size:81 final size:81
Alignment explanation
Indices: 32834929--32835124 Score: 347
Period size: 81 Copynumber: 2.4 Consensus size: 81
32834919 TTAACACCCT
*
32834929 AAGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAT
1 AAGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAAT
32834994 AGTAATTCTGTAAATC
66 AGTAATTCTGTAAATC
*
32835010 AAGGGCAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAAT
1 AAGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAAT
32835075 AGTAATTCTGTAAATC
66 AGTAATTCTGTAAATC
* * *
32835091 GAGGGTAAAACGGTAATTTTATAAATCGAGGGTA
1 AAGGGCAAAATGGTAATTTTATAAATCGAGGGTA
32835125 CTTTGGTAAT
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 109 1.00
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.31
Consensus pattern (81 bp):
AAGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAAT
AGTAATTCTGTAAATC
Found at i:32835149 original size:54 final size:54
Alignment explanation
Indices: 32834930--32835151 Score: 250
Period size: 54 Copynumber: 4.1 Consensus size: 54
32834920 TAACACCCTA
* *
32834930 AGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTT-GTAAATCG
1 AGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAATGGTAATTTTAG-AAATCG
* * * * * *
32834984 AGGGTAAAATAGTAATTCTGTAAATCAAGGGCAAAATGGTAATTTTATAAATTG
1 AGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAATGGTAATTTTAGAAATCG
* * *
32835038 AGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCT-GTAAATCG
1 AGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAATGGTAATTTTAG-AAATCG
* * *** * *
32835092 AGGGTAAAACGGTAATTTTATAAATCGAGGGTACTTTGGTAATTTTAGAAGTAG
1 AGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAATGGTAATTTTAGAAATCG
32835146 AGGGTA
1 AGGGTA
32835152 TTTTAGTAAT
Statistics
Matches: 140, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
54 139 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (54 bp):
AGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAATGGTAATTTTAGAAATCG
Found at i:32835162 original size:81 final size:81
Alignment explanation
Indices: 32834929--32835151 Score: 333
Period size: 81 Copynumber: 2.8 Consensus size: 81
32834919 TTAACACCCT
*
32834929 AAGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAT
1 AAGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATAGAGGGTAAAAT
32834994 AGTAATTCTGTAAATC
66 AGTAATTCTGTAAATC
*
32835010 AAGGGCAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTGTAAATCA-AGGGTAAAA
1 AAGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAAT-AGAGGGTAAAA
32835074 TAGTAATTCTGTAAATC
65 TAGTAATTCTGTAAATC
* * * *** *
32835091 GAGGGTAAAACGGTAATTTTATAAATCGAGGGTACTTTGGTAATTTTAG-AAGTAGAGGGTA
1 AAGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTT-GTAAATAGAGGGTA
32835152 TTTTAGTAAT
Statistics
Matches: 129, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
80 1 0.01
81 127 0.98
82 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.31
Consensus pattern (81 bp):
AAGGGCAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATAGAGGGTAAAAT
AGTAATTCTGTAAATC
Found at i:32839100 original size:45 final size:45
Alignment explanation
Indices: 32839040--32839217 Score: 302
Period size: 45 Copynumber: 4.0 Consensus size: 45
32839030 CGATATCATT
* * *
32839040 TCACCGGCATTATAGCCTACTAGGCTCGAAGACCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
32839085 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
32839130 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
32839175 TCACTGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
32839218 CCGTACAAAA
Statistics
Matches: 128, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 128 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:32841707 original size:27 final size:27
Alignment explanation
Indices: 32841677--32841881 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
32841667 ATATTGAGTC
* * * *
32841677 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32841704 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32841731 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32841759 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32841786 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32841813 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32841840 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32841867 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32841882 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32849934 original size:29 final size:29
Alignment explanation
Indices: 32849895--32849973 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
32849885 CTTAATAATC
*
32849895 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
32849925 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
32849954 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
32849974 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:32855387 original size:40 final size:40
Alignment explanation
Indices: 32855313--32855494 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
32855303 AACCCAAGTA
* * *
32855313 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
32855352 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
32855392 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
32855432 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
32855472 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
32855495 CATTCGAATA
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.09
40 115 0.88
41 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:32858494 original size:67 final size:67
Alignment explanation
Indices: 32858419--32858571 Score: 288
Period size: 67 Copynumber: 2.3 Consensus size: 67
32858409 CATCATGTGT
*
32858419 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGGGATATATATAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
32858484 AG
66 AG
32858486 ACAAGAGAGCTACGGGATATATATAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGGGATATATATAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
32858551 AG
66 AG
*
32858553 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGGGATA
32858572 AACTGGTTAG
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 84 1.00
ACGTcount: A:0.31, C:0.18, G:0.31, T:0.20
Consensus pattern (67 bp):
ACAAGAGAGCTACGGGATATATATAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
AG
Found at i:32869229 original size:21 final size:21
Alignment explanation
Indices: 32869177--32869230 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
32869167 GTCCTCATCC
*
32869177 GAGTTGGACTAACTACCCTTG
1 GAGTTGGACTGACTACCCTTG
32869198 GAGTTGGACTGACT-CCTCTTG
1 GAGTTGGACTGACTACC-CTTG
*
32869219 GAGTTGAACTGA
1 GAGTTGGACTGA
32869231 TAACTGAGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 2 0.07
21 28 0.93
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (21 bp):
GAGTTGGACTGACTACCCTTG
Found at i:32869290 original size:84 final size:83
Alignment explanation
Indices: 32869216--32869481 Score: 399
Period size: 84 Copynumber: 3.2 Consensus size: 83
32869206 CTGACTCCTC
* * *
32869216 TTGGAGTTGAACTGATAACTGAGGTTGAGCTATGGGATTGATTCGATGAGGTGGACGTCCTTATC
1 TTGGAGTTGGACTG-TAACTGAAGTTGAGCTATGGGATTGATTCGATGAGGTGGACGTCCTCATC
32869281 TGAGTTGGACTAGCTACCA
65 TGAGTTGGACTAGCTACCA
* * *
32869300 TTGGAGTTGGACTGGTAACAGAAGTTGAGCTATGAGATTGACTCGATGAGGTGGACGTCCTCATC
1 TTGGAGTTGGACT-GTAACTGAAGTTGAGCTATGGGATTGATTCGATGAGGTGGACGTCCTCATC
32869365 TGAGTTGGACTAGCTACCA
65 TGAGTTGGACTAGCTACCA
* *
32869384 TTGGAGTTGGACTTGTAACTGAAGTTGAGCTATGGGATTGACTT-GATGAGATGGATGTCCTCAT
1 TTGGAGTTGGAC-TGTAACTGAAGTTGAGCTATGGGATTGA-TTCGATGAGGTGGACGTCCTCAT
* *
32869448 CTGAGTTGGACTAACTACCC
64 CTGAGTTGGACTAGCTACCA
32869468 TTGGAGTTGGACTG
1 TTGGAGTTGGACTG
32869482 GCTCCTCTTG
Statistics
Matches: 166, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
83 2 0.01
84 161 0.97
85 3 0.02
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.30
Consensus pattern (83 bp):
TTGGAGTTGGACTGTAACTGAAGTTGAGCTATGGGATTGATTCGATGAGGTGGACGTCCTCATCT
GAGTTGGACTAGCTACCA
Found at i:32869304 original size:105 final size:105
Alignment explanation
Indices: 32869120--32869313 Score: 309
Period size: 105 Copynumber: 1.8 Consensus size: 105
32869110 TCAGTGATAA
* *
32869120 AACTGATATCTGGAGTTGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCATCCGAGTTGGA
1 AACTGATAACTGGAGTTGAGCTATGGGATTGACTCGATGAGGTGGACGTCCTCATCCGAGTTGGA
*
32869185 CTAACTACCCTTGGAGTTGGACTGACTCCTCTTGGAGTTG
66 CTAACTACCATTGGAGTTGGACTGACTCCTCTTGGAGTTG
* * *
32869225 AACTGATAACT-GAGGTTGAGCTATGGGATTGATTCGATGAGGTGGACGTCCTTATCTGAGTTGG
1 AACTGATAACTGGA-GTTGAGCTATGGGATTGACTCGATGAGGTGGACGTCCTCATCCGAGTTGG
*
32869289 ACTAGCTACCATTGGAGTTGGACTG
65 ACTAACTACCATTGGAGTTGGACTG
32869314 GTAACAGAAG
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
104 2 0.02
105 79 0.98
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (105 bp):
AACTGATAACTGGAGTTGAGCTATGGGATTGACTCGATGAGGTGGACGTCCTCATCCGAGTTGGA
CTAACTACCATTGGAGTTGGACTGACTCCTCTTGGAGTTG
Found at i:32869474 original size:21 final size:21
Alignment explanation
Indices: 32869450--32869497 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
32869440 GTCCTCATCT
32869450 GAGTTGGACTAACTACC-CTTG
1 GAGTTGGACTAACT-CCTCTTG
**
32869471 GAGTTGGACTGGCTCCTCTTG
1 GAGTTGGACTAACTCCTCTTG
32869492 GAGTTG
1 GAGTTG
32869498 AACTGATAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.17, C:0.21, G:0.31, T:0.31
Consensus pattern (21 bp):
GAGTTGGACTAACTCCTCTTG
Found at i:32869475 original size:105 final size:103
Alignment explanation
Indices: 32869384--32870313 Score: 741
Period size: 105 Copynumber: 8.9 Consensus size: 103
32869374 CTAGCTACCA
* * *
32869384 TTGGAGTTGGACTTGTAACTGAAGTTGAGCTATGGGATTGACTTGATGAGATGGATGTCCTCATC
1 TTGGAGTTGAAC-TGTAACTGAAGTTGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCAT-
* *
32869449 TGAGTTGGACTAACTACCCTTGGAGTTGGACTGGCTCCTC
64 TGAGTTGGACTGACTACCCTTGGAGTTGGACTGACTCCTC
*
32869489 TTGGAGTTGAACTGATAACTGAAGTGGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCATC
1 TTGGAGTTGAACTG-TAACTGAAGTTGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCAT-
* *
32869554 CGAGTTGGACTAACTACCCTTGGAGTTGGACTGAAC-CCTC
64 TGAGTTGGACTGACTACCCTTGGAGTTGGACTG-ACTCCTC
* *
32869594 TTGGAGTTGAACTGATAACTGAAGTTAAGCTATGGGATTGACTCGATGAGGTGGATGTCCTGATT
1 TTGGAGTTGAACTG-TAACTGAAGTTGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCATT
* * * *
32869659 GGAGTTGGACTGACT-CCTCTTGGAATTGAAATGA-TAACAT-
65 -GAGTTGGACTGACTACC-CTTGGAGTTGGACTGACT--CCTC
* * * * * * * * *
32869699 TTGGAGTTGGACT-TACTCCTCTTGGAGTTGAACTGAT--AACTGA--AGTTGAGCTAAGGGAT-
1 TTGGAGTTGAACTGTA----AC-TGAAGTTGAGCT-ATGGGATTGACTCGATGAGGT---GGATG
* * * **
32869758 TGACTCGA-TGAGGTGGA-TG--TTCCCATCCGAGTTGGACTGACTACCT-
57 T-CCTC-ATTGAGTTGGACTGACTACCC-TTGGAGTTGGACTGACT-CCTC
** ** * * * * *
32869804 TTGGAGTTGAACAAATAACTGAAGTCAAGCTTTGGGATTGGCTCGAT-ATGCTGGATGTTCTTAT
1 TTGGAGTTGAAC-TGTAACTGAAGTTGAGCTATGGGATTGACTCGATGA-GGTGGATGTCCTCAT
* * *
32869868 TCGAATTGGACTGACTACCCTTGAAATTGGACTGACTCCTC
64 T-GAGTTGGACTGACTACCCTTGGAGTTGGACTGACTCCTC
* * *
32869909 TTGGGGTTGAAATGTGAACTGAAGTTGAGCTATGGGATTGACTTGATGAGGTGGATGTCCTCATC
1 TTGGAGTTGAACTGT-AACTGAAGTTGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCAT-
** * *
32869974 CCAGTTGGACTCACTACCCTTGGAGTTGGAATGACTCCTC
64 TGAGTTGGACTGACTACCCTTGGAGTTGGACTGACTCCTC
* * * *
32870014 TTGGAGTTGAACTGATAACTGAAGTTGAACTATGGGATTGACTTGATGAGGTGTATGTCCTTATC
1 TTGGAGTTGAACTG-TAACTGAAGTTGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCAT-
* *
32870079 TGAGTTGGACTCACTACCCTTGGAGTTGGATTGACTCCTC
64 TGAGTTGGACTGACTACCCTTGGAGTTGGACTGACTCCTC
* * * * *
32870119 TTGGAGTTGAAC--TAATTGAAGTTGAGCTATGGGATAGACTCAATGAGGTTGATTTCCTCATTC
1 TTGGAGTTGAACTGTAACTGAAGTTGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCATT-
* **
32870182 GAGTTGGACTGATTACCCTTGGAGTAAGACTGAC-CTCTC
65 GAGTTGGACTGACTACCCTTGGAGTTGGACTGACTC-CTC
** * * * * * * *
32870221 TTAAAGTTGAACT-AACTACTGGAGCTGAGCTATGGGATTGACTTGATAAGGTTGATGCCCTCAT
1 TTGGAGTTGAACTGTA--ACTGAAGTTGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCAT
* *
32870285 CCGAGTTGGACTGACT-CCTCTTGAAGTTG
64 -TGAGTTGGACTGACTACC-CTTGGAGTTG
32870314 AACTTATAAC
Statistics
Matches: 665, Mismatches: 114, Indels: 92
0.76 0.13 0.11
Matches are distributed among these distances:
101 4 0.01
102 97 0.15
103 14 0.02
104 16 0.02
105 488 0.73
106 12 0.02
107 15 0.02
108 16 0.02
109 3 0.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (103 bp):
TTGGAGTTGAACTGTAACTGAAGTTGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCATTG
AGTTGGACTGACTACCCTTGGAGTTGGACTGACTCCTC
Found at i:32869579 original size:21 final size:21
Alignment explanation
Indices: 32869555--32869608 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
32869545 GTCCTCATCC
32869555 GAGTTGGACT-AACTACC-CTTG
1 GAGTTGGACTGAAC--CCTCTTG
32869576 GAGTTGGACTGAACCCTCTTG
1 GAGTTGGACTGAACCCTCTTG
*
32869597 GAGTTGAACTGA
1 GAGTTGGACTGA
32869609 TAACTGAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 2 0.07
21 25 0.83
22 3 0.10
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (21 bp):
GAGTTGGACTGAACCCTCTTG
Found at i:32869681 original size:21 final size:21
Alignment explanation
Indices: 32869657--32869734 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
32869647 GATGTCCTGA
*
32869657 TTGGAGTTGGACTGACTCCTC
1 TTGGAGTTGAACTGACTCCTC
* * *
32869678 TTGGAATTGAAATGA-TAACAT-
1 TTGGAGTTGAACTGACT--CCTC
* *
32869699 TTGGAGTTGGACTTACTCCTC
1 TTGGAGTTGAACTGACTCCTC
32869720 TTGGAGTTGAACTGA
1 TTGGAGTTGAACTGA
32869735 TAACTGAAGT
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (21 bp):
TTGGAGTTGAACTGACTCCTC
Found at i:32869705 original size:126 final size:126
Alignment explanation
Indices: 32869573--32869814 Score: 373
Period size: 126 Copynumber: 1.9 Consensus size: 126
32869563 CTAACTACCC
*
32869573 TTGGAGTTGGACTGAAC-CCTCTTGGAGTTGAACTGATAACTGAAGTTAAGCTATGGGATTGACT
1 TTGGAGTTGGACT-AACTCCTCTTGGAGTTGAACTGATAACTGAAGTTAAGCTAAGGGATTGACT
* **
32869637 CGATGAGGTGGATG-TCCTGATTGGAGTTGGACTGACT-CCTCTTGGAATTGAAATGATAACAT
65 CGATGAGGTGGATGTTCC-CATCCGAGTTGGACTGACTACCT-TTGGAATTGAAATGATAACAT
* *
32869699 TTGGAGTTGGACTTACTCCTCTTGGAGTTGAACTGATAACTGAAGTTGAGCTAAGGGATTGACTC
1 TTGGAGTTGGACTAACTCCTCTTGGAGTTGAACTGATAACTGAAGTTAAGCTAAGGGATTGACTC
*
32869764 GATGAGGTGGATGTTCCCATCCGAGTTGGACTGACTACCTTTGGAGTTGAA
66 GATGAGGTGGATGTTCCCATCCGAGTTGGACTGACTACCTTTGGAATTGAA
32869815 CAAATAACTG
Statistics
Matches: 106, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
125 2 0.02
126 98 0.92
127 6 0.06
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (126 bp):
TTGGAGTTGGACTAACTCCTCTTGGAGTTGAACTGATAACTGAAGTTAAGCTAAGGGATTGACTC
GATGAGGTGGATGTTCCCATCCGAGTTGGACTGACTACCTTTGGAATTGAAATGATAACAT
Found at i:32869717 original size:42 final size:42
Alignment explanation
Indices: 32869657--32869738 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
32869647 GATGTCCTGA
32869657 TTGGAGTTGGACTGACTCCTCTTGGAATTGAAATGATAACAT
1 TTGGAGTTGGACTGACTCCTCTTGGAATTGAAATGATAACAT
* * *
32869699 TTGGAGTTGGACTTACTCCTCTTGGAGTTGAACTGATAAC
1 TTGGAGTTGGACTGACTCCTCTTGGAATTGAAATGATAAC
32869739 TGAAGTTGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (42 bp):
TTGGAGTTGGACTGACTCCTCTTGGAATTGAAATGATAACAT
Found at i:32869843 original size:84 final size:85
Alignment explanation
Indices: 32869702--32869890 Score: 224
Period size: 84 Copynumber: 2.3 Consensus size: 85
32869692 ATAACATTTG
* ** **
32869702 GAGTTGGACTTACT-CCTCTTGGAGTTGAACTGATAACTGAAGTTGAGCTAAGGGATTGACTCGA
1 GAGTTGGACTGACTACCTCTTGGAGTTGAACAAATAACTGAAGTCAAGCTAAGGGATTGACTCGA
*
32869766 TGA-GGTGGATGTTCCCATCC
66 T-ATGCTGGATGTTCCCATCC
** *
32869786 GAGTTGGACTGACTACCT-TTGGAGTTGAACAAATAACTGAAGTCAAGCTTTGGGATTGGCTCGA
1 GAGTTGGACTGACTACCTCTTGGAGTTGAACAAATAACTGAAGTCAAGCTAAGGGATTGACTCGA
** *
32869850 TATGCTGGATGTTCTTATTC
66 TATGCTGGATGTTCCCATCC
*
32869870 GAATTGGACTGACTACC-CTTG
1 GAGTTGGACTGACTACCTCTTG
32869891 AAATTGGACT
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
83 1 0.01
84 85 0.96
85 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (85 bp):
GAGTTGGACTGACTACCTCTTGGAGTTGAACAAATAACTGAAGTCAAGCTAAGGGATTGACTCGA
TATGCTGGATGTTCCCATCC
Found at i:32870000 original size:21 final size:21
Alignment explanation
Indices: 32869976--32870022 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
32869966 TCCTCATCCC
*
32869976 AGTTGGACTCACTACC-CTTGG
1 AGTTGGAATCACT-CCTCTTGG
*
32869997 AGTTGGAATGACTCCTCTTGG
1 AGTTGGAATCACTCCTCTTGG
32870018 AGTTG
1 AGTTG
32870023 AACTGATAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (21 bp):
AGTTGGAATCACTCCTCTTGG
Found at i:32870002 original size:210 final size:207
Alignment explanation
Indices: 32869399--32870521 Score: 657
Period size: 210 Copynumber: 5.5 Consensus size: 207
32869389 GTTGGACTTG
* * * * * * *
32869399 TAACTGAAGTTGAGCTATGGGATTGACTTGATGAGATGGATGTCCTCATCTGAGTTGGACTAACT
1 TAACTGAAGTTCAACTATGGGATTGACTCGATGAGCTGGATGTCCTTATCTGAATTGGACTCACT
* * * * *
32869464 ACCCTTGGAGTTGGACTGGCTCCTCTTGGAGTTGAACTGATAACTGAAGTGGAGCTATGGGATTG
66 ACCCTTGAAATTGGACTGACTCCTCTTGGAGTTGAAC---TAACTGAAGTTGAGCTATGGGATAG
* * *
32869529 ACTCGATGAGGTGGATGTCCTCATCCGAGTTGGACTAACTACCCTTGGAGTTGGACTGAAC-CCT
128 ACTCAATGAGGTGGATGTCCTCATCCCAGTTGGACTCACTACCCTTGGAGTTGGACTG-ACTCCT
**
32869593 CTTGGAGTTGAACTGA
192 CTTGGAGTTGAACAAA
* * * *
32869609 TAACTGAAGTT-AAGCTATGGGATTGACTCGATGAGGTGGATGTCCTGAT-TGGAGTTGGACTGA
1 TAACTGAAGTTCAA-CTATGGGATTGACTCGATGAGCTGGATGTCCTTATCT-GAATTGGACTCA
* * * * * * **** * ***
32869672 CT-CCTCTTGGAATTGAAATGA-TAACAT-TTGGAGTTGGACTTACTCCTCTTGGAGTTGAACTG
64 CTACC-CTTGAAATTGGACTGACT--CCTCTTGGAGTTGAACTAACTGAAGTT-GAGCT-ATGGG
* * * * * * * **
32869734 ATA-ACTGAAGTTGAGCTAAGGGAT-TGACTCGAT--GAGGTGGA-T--GTTCCCATCCGAGTTG
124 ATAGACTCAA--TGAGGT---GGATGT-CCTC-ATCCCAGTTGGACTCACTACCC-TTGGAGTTG
32869792 GACTGACTACCT-TTGGAGTTGAACAAA
181 GACTGACT-CCTCTTGGAGTTGAACAAA
* * * *
32869819 TAACTGAAG-TCAAGCTTTGGGATTGGCTCGAT-ATGCTGGATGTTCTTAT-TCGAATTGGACTG
1 TAACTGAAGTTCAA-CTATGGGATTGACTCGATGA-GCTGGATGTCCTTATCT-GAATTGGACTC
* *
32869881 ACTACCCTTGAAATTGGACTGACTCCTCTTGGGGTTGAAATGTGAACTGAAGTTGAGCTATGGGA
63 ACTACCCTTGAAATTGGACTGACTCCTCTTGGAGTTG-AA-CT-AACTGAAGTTGAGCTATGGGA
* ** *
32869946 TTGACTTGATGAGGTGGATGTCCTCATCCCAGTTGGACTCACTACCCTTGGAGTTGGAATGACTC
125 TAGACTCAATGAGGTGGATGTCCTCATCCCAGTTGGACTCACTACCCTTGGAGTTGGACTGACTC
**
32870011 CTCTTGGAGTTGAACTGA
190 CTCTTGGAGTTGAACAAA
* * * * *
32870029 TAACTGAAGTTGAACTATGGGATTGACTTGATGAGGTGTATGTCCTTATCTGAGTTGGACTCACT
1 TAACTGAAGTTCAACTATGGGATTGACTCGATGAGCTGGATGTCCTTATCTGAATTGGACTCACT
* * * *
32870094 ACCCTTGGAGTTGGATTGACTCCTCTTGGAGTTGAACTAATTGAAGTTGAGCTATGGGATAGACT
66 ACCCTTGAAATTGGACTGACTCCTCTTGGAGTTGAACTAACTGAAGTTGAGCTATGGGATAGACT
* * * * * * **
32870159 CAATGAGGTTGATTTCCTCATTCGAGTTGGACTGATTACCCTTGGAGTAAGACTGAC-CTCTCTT
131 CAATGAGGTGGATGTCCTCATCCCAGTTGGACTCACTACCCTTGGAGTTGGACTGACTC-CTCTT
** *
32870223 AAAGTTGAACTAAC
195 GGAGTTGAAC-AAA
* * * * * * * * * * * * *
32870237 T-ACTGGAGCTGAGCTATGGGATTGACTTGATAAGGTTGATGCCCTCATCCGAGTTGGACTGACT
1 TAACTGAAGTTCAACTATGGGATTGACTCGATGAGCTGGATGTCCTTATCTGAATTGGACTCACT
* *
32870301 -CCTCTTGAAGTT-GA---A-----C------TT--A-TAACTGAAGTTGAGCTATGGGATTGAC
66 ACC-CTTGAAATTGGACTGACTCCTCTTGGAGTTGAACTAACTGAAGTTGAGCTATGGGATAGAC
** * * * * *
32870347 TTGATAAGCTCGATGTTCTCATCCGAGTTGGACTCACTACCCTTGGAGTTGGACTGACTCCTCTT
130 TCAATGAGGTGGATGTCCTCATCCCAGTTGGACTCACTACCCTTGGAGTTGGACTGACTCCTCTT
* **
32870412 GAAGTTGAACTGA
195 GGAGTTGAACAAA
* * ** * * * * * * *
32870425 GAACTGAAGTTGAGTTTTGGGATTGACTTGATGGGATGGATGTCCTAATCTGAGTTGGACTGACT
1 TAACTGAAGTTCAACTATGGGATTGACTCGATGAGCTGGATGTCCTTATCTGAATTGGACTCACT
* * ** * *
32870490 TCCCTTGGAGGTAGACTAACTCCTCTTGGAGT
66 ACCCTTGAAATTGGACTGACTCCTCTTGGAGT
32870522 GGGGCTAACT
Statistics
Matches: 711, Mismatches: 145, Indels: 120
0.73 0.15 0.12
Matches are distributed among these distances:
189 144 0.20
190 6 0.01
192 2 0.00
193 1 0.00
198 2 0.00
203 1 0.00
204 1 0.00
206 7 0.01
207 157 0.22
208 17 0.02
209 25 0.04
210 294 0.41
211 23 0.03
212 17 0.02
213 12 0.02
214 2 0.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (207 bp):
TAACTGAAGTTCAACTATGGGATTGACTCGATGAGCTGGATGTCCTTATCTGAATTGGACTCACT
ACCCTTGAAATTGGACTGACTCCTCTTGGAGTTGAACTAACTGAAGTTGAGCTATGGGATAGACT
CAATGAGGTGGATGTCCTCATCCCAGTTGGACTCACTACCCTTGGAGTTGGACTGACTCCTCTTG
GAGTTGAACAAA
Found at i:32870064 original size:420 final size:420
Alignment explanation
Indices: 32869300--32870102 Score: 1138
Period size: 420 Copynumber: 1.9 Consensus size: 420
32869290 CTAGCTACCA
* * *
32869300 TTGGAGTTGGACTGGTAACAGAAGTTGAGCTATGAGATTGACTCGATGAGGTGGACGTCCTCATC
1 TTGGAGTTGAACTGATAACAGAAGTTGAGCTAAGAGATTGACTCGATGAGGTGGACGTCCTCATC
* * *** ** *
32869365 TGAGTTGGACTAGCTACCATTGGAGTTGGACTTGTAACTGAAGTTGAGCTATGGGATTGACTTGA
66 CGAGTTGGACTAGCTACCATTGGAGTTGAACAAATAACTGAAGTCAAGCTATGGGATTGACTCGA
* * * *
32869430 TGAGATGGATGTCCTCATCTGAGTTGGACTAACTACCCTTGGAGTTGGACTGGCTCCTCTTGGAG
131 TGAGATGGATGTCCTCATCTGAATTGGACTAACTACCCTTGAAATTGGACTGACTCCTCTTGGAG
* *
32869495 TTGAACTGATAACTGAAGTGGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCATCCGAGTT
196 TTGAAATGATAACTGAAGTGGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCATCCCAGTT
*
32869560 GGACTAACTACCCTTGGAGTTGGACTGAACCCTCTTGGAGTTGAACTGATAACTGAAGTTAAGCT
261 GGACTAACTACCCTTGGAGTTGGAATGAACCCTCTTGGAGTTGAACTGATAACTGAAGTTAAGCT
*
32869625 ATGGGATTGACTCGATGAGGTGGATGTCCTGAT-TGGAGTTGGACTGACT-CCTCTTGGAATTGA
326 ATGGGATTGACTCGATGAGGTGGATGTCCTGATCT-GAGTTGGACTCACTACC-CTTGGAATTGA
32869688 AATGATAACATTTGGAGTTGGACTTACTCCTC
389 AATGATAACATTTGGAGTTGGACTTACTCCTC
* * *
32869720 TTGGAGTTGAACTGATAACTGAAGTTGAGCTAAGGGATTGACTCGATGAGGTGGATGTTCC-CAT
1 TTGGAGTTGAACTGATAACAGAAGTTGAGCTAAGAGATTGACTCGATGAGGTGGACG-TCCTCAT
* * *
32869784 CCGAGTTGGACT-GACTACCTTTGGAGTTGAACAAATAACTGAAGTCAAGCTTTGGGATTGGCTC
65 CCGAGTTGGACTAG-CTACCATTGGAGTTGAACAAATAACTGAAGTCAAGCTATGGGATTGACTC
* * * *
32869848 GAT-ATGCTGGATGTTCTTAT-TCGAATTGGACTGACTACCCTTGAAATTGGACTGACTCCTCTT
129 GATGA-GATGGATGTCCTCATCT-GAATTGGACTAACTACCCTTGAAATTGGACTGACTCCTCTT
* * *
32869911 GGGGTTGAAATG-TGAACTGAAGTTGAGCTATGGGATTGACTTGATGAGGTGGATGTCCTCATCC
192 GGAGTTGAAATGAT-AACTGAAGTGGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCATCC
*
32869975 CAGTTGGACTCACTACCCTTGGAGTTGGAATG-ACTCCTCTTGGAGTTGAACTGATAACTGAAGT
256 CAGTTGGACTAACTACCCTTGGAGTTGGAATGAAC-CCTCTTGGAGTTGAACTGATAACTGAAGT
* * *
32870039 TGAA-CTATGGGATTGACTTGATGAGGTGTATGTCCTTATCTGAGTTGGACTCACTACCCTTGGA
320 T-AAGCTATGGGATTGACTCGATGAGGTGGATGTCCTGATCTGAGTTGGACTCACTACCCTTGGA
32870103 GTTGGATTGA
Statistics
Matches: 338, Mismatches: 36, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
419 6 0.02
420 324 0.96
421 8 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (420 bp):
TTGGAGTTGAACTGATAACAGAAGTTGAGCTAAGAGATTGACTCGATGAGGTGGACGTCCTCATC
CGAGTTGGACTAGCTACCATTGGAGTTGAACAAATAACTGAAGTCAAGCTATGGGATTGACTCGA
TGAGATGGATGTCCTCATCTGAATTGGACTAACTACCCTTGAAATTGGACTGACTCCTCTTGGAG
TTGAAATGATAACTGAAGTGGAGCTATGGGATTGACTCGATGAGGTGGATGTCCTCATCCCAGTT
GGACTAACTACCCTTGGAGTTGGAATGAACCCTCTTGGAGTTGAACTGATAACTGAAGTTAAGCT
ATGGGATTGACTCGATGAGGTGGATGTCCTGATCTGAGTTGGACTCACTACCCTTGGAATTGAAA
TGATAACATTTGGAGTTGGACTTACTCCTC
Found at i:32870089 original size:189 final size:188
Alignment explanation
Indices: 32869894--32870497 Score: 588
Period size: 189 Copynumber: 3.1 Consensus size: 188
32869884 ACCCTTGAAA
32869894 TTGGACTGACTCCTCTTGGGGTTGAAATGTGAACTGAAGTTGAGCTATGGGATTGACTTGATGAG
1 TTGGACTGACTCC-CTTGGGGTTGAAATGTGAACTGAAGTTGAGCTATGGGATTGACTTGATGAG
* * * *
32869959 GTGGATGTCCTCATCCCAGTTGGACTCACTACCCTTGGAGTTGGAATGACTCCTCTTGGAGTTGA
65 GTCGATGTCCTCATCCGAGTTGGACTCACTACCCTTGGAGTTGGACTGACTCCTCTTGAAGTTGA
* *
32870024 ACTGATAACTGAAGTTGAACTATGGGATTGACTTGATGAGGTGTATGTCCTTATCTGAG
130 ACTGATAACTGAAGTTGAGCTATGGGATTGACTTGATGAGGTGTATGTCCTAATCTGAG
* **
32870083 TTGGACTCACTACCCTTGGAGTTGGATTGACTCCTCTTGGAGTTGAACTAATTGAAGTTGAGCTA
1 TTGGACTGACT-CCCTT-G-G--GG-TTGA-----AAT---G-TGAAC----TGAAGTTGAGCTA
* ** * * * * * **
32870148 TGGGATAGACTCAATGAGGTTGATTTCCTCATTCGAGTTGGACTGATTACCCTTGGAGTAAGACT
47 TGGGATTGACTTGATGAGGTCGATGTCCTCATCCGAGTTGGACTCACTACCCTTGGAGTTGGACT
* * * * *
32870213 GAC-CTCTCTTAAAGTTGAACTAACT-ACTGGAGCTGAGCTATGGGATTGACTTGATAAGGT-TG
112 GACTC-CTCTTGAAGTTGAACTGA-TAACTGAAGTTGAGCTATGGGATTGACTTGATGAGGTGT-
* * *
32870275 ATGCCCTCATCCGAG
174 ATGTCCTAATCTGAG
** * * *
32870290 TTGGACTGACTCCTCTTGAAGTTGAACT-TATAACTGAAGTTGAGCTATGGGATTGACTTGATAA
1 TTGGACTGACTCC-CTTGGGGTTGAAATGT-GAACTGAAGTTGAGCTATGGGATTGACTTGATGA
* *
32870354 GCTCGATGTTCTCATCCGAGTTGGACTCACTACCCTTGGAGTTGGACTGACTCCTCTTGAAGTTG
64 GGTCGATGTCCTCATCCGAGTTGGACTCACTACCCTTGGAGTTGGACTGACTCCTCTTGAAGTTG
* * * *
32870419 AACTGAGAACTGAAGTTGAGTTTTGGGATTGACTTGATG-GGATGGATGTCCTAATCTGAG
129 AACTGATAACTGAAGTTGAGCTATGGGATTGACTTGATGAGG-TGTATGTCCTAATCTGAG
32870479 TTGGACTGACTTCCCTTGG
1 TTGGACTGAC-TCCCTTGG
32870498 AGGTAGACTA
Statistics
Matches: 329, Mismatches: 57, Indels: 58
0.74 0.13 0.13
Matches are distributed among these distances:
188 2 0.01
189 150 0.46
190 7 0.02
191 1 0.00
192 1 0.00
193 5 0.02
194 4 0.01
197 1 0.00
199 1 0.00
202 5 0.02
203 6 0.02
206 5 0.02
207 140 0.43
208 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (188 bp):
TTGGACTGACTCCCTTGGGGTTGAAATGTGAACTGAAGTTGAGCTATGGGATTGACTTGATGAGG
TCGATGTCCTCATCCGAGTTGGACTCACTACCCTTGGAGTTGGACTGACTCCTCTTGAAGTTGAA
CTGATAACTGAAGTTGAGCTATGGGATTGACTTGATGAGGTGTATGTCCTAATCTGAG
Found at i:32870104 original size:21 final size:21
Alignment explanation
Indices: 32870080--32870127 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
32870070 GTCCTTATCT
32870080 GAGTTGGACTCACTACC-CTTG
1 GAGTTGGACTCACT-CCTCTTG
* *
32870101 GAGTTGGATTGACTCCTCTTG
1 GAGTTGGACTCACTCCTCTTG
32870122 GAGTTG
1 GAGTTG
32870128 AACTAATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (21 bp):
GAGTTGGACTCACTCCTCTTG
Found at i:32870312 original size:84 final size:84
Alignment explanation
Indices: 32870209--32870397 Score: 240
Period size: 84 Copynumber: 2.2 Consensus size: 84
32870199 CTTGGAGTAA
* * *
32870209 GACTGAC-CTCTCTTAAAGTTGAACTAACT-ACTGGAGCTGAGCTATGGGATTGACTTGATAAGG
1 GACTGACTC-CTCTTGAAGTTGAACTAA-TAACTGAAGCTGAGCTATGGGATTGACTTGATAAGC
*
32870272 TTGATGCCCTCATCCGAGTTG
64 TCGATGCCCTCATCCGAGTTG
* *
32870293 GACTGACTCCTCTTGAAGTTGAACTTATAACTGAAGTTGAGCTATGGGATTGACTTGATAAGCTC
1 GACTGACTCCTCTTGAAGTTGAACTAATAACTGAAGCTGAGCTATGGGATTGACTTGATAAGCTC
**
32870358 GATGTTCTCATCCGAGTTG
66 GATGCCCTCATCCGAGTTG
* *
32870377 GACTCACTACC-CTTGGAGTTG
1 GACTGACT-CCTCTTGAAGTTG
32870398 GACTGACTCC
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
83 1 0.01
84 88 0.96
85 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (84 bp):
GACTGACTCCTCTTGAAGTTGAACTAATAACTGAAGCTGAGCTATGGGATTGACTTGATAAGCTC
GATGCCCTCATCCGAGTTG
Found at i:32870397 original size:21 final size:21
Alignment explanation
Indices: 32870371--32870418 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
32870361 GTTCTCATCC
32870371 GAGTTGGACTCACTACC-CTTG
1 GAGTTGGACTCACT-CCTCTTG
*
32870392 GAGTTGGACTGACTCCTCTTG
1 GAGTTGGACTCACTCCTCTTG
*
32870413 AAGTTG
1 GAGTTG
32870419 AACTGAGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (21 bp):
GAGTTGGACTCACTCCTCTTG
Found at i:32870480 original size:105 final size:105
Alignment explanation
Indices: 32870287--32870517 Score: 318
Period size: 105 Copynumber: 2.2 Consensus size: 105
32870277 GCCCTCATCC
* *
32870287 GAGTTGGACTGACTCCTCTTGAAGTTGAACTTATAACTGAAGTTGAGCTATGGGATTGACTTGAT
1 GAGTTGGACTGACTCCTCTTGAAGTTGAACTGAGAACTGAAGTTGAGCTATGGGATTGACTTGAT
* * *
32870352 AAGCTCGATGTTCTCATCCGAGTTGGACTCACTACCCTTG
66 AAGATCGATGTCCTAATCCGAGTTGGACTCACTACCCTTG
* *
32870392 GAGTTGGACTGACTCCTCTTGAAGTTGAACTGAGAACTGAAGTTGAGTTTTGGGATTGACTTGAT
1 GAGTTGGACTGACTCCTCTTGAAGTTGAACTGAGAACTGAAGTTGAGCTATGGGATTGACTTGAT
** * * * *
32870457 GGGATGGATGTCCTAATCTGAGTTGGACTGACTTCCCTTG
66 AAGATCGATGTCCTAATCCGAGTTGGACTCACTACCCTTG
* * *
32870497 GAGGTAGACTAACTCCTCTTG
1 GAGTTGGACTGACTCCTCTTG
32870518 GAGTGGGGCT
Statistics
Matches: 110, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
105 110 1.00
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (105 bp):
GAGTTGGACTGACTCCTCTTGAAGTTGAACTGAGAACTGAAGTTGAGCTATGGGATTGACTTGAT
AAGATCGATGTCCTAATCCGAGTTGGACTCACTACCCTTG
Found at i:32870517 original size:21 final size:21
Alignment explanation
Indices: 32870480--32870549 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
32870470 TAATCTGAGT
*
32870480 TGGACTGACTTCC-CTTGGAGG
1 TGGACTAAC-TCCTCTTGGAGG
*
32870501 TAGACTAACTCCTCTTGGA-G
1 TGGACTAACTCCTCTTGGAGG
* *
32870521 TGGGGCTAACTCCTCTTGAAGG
1 T-GGACTAACTCCTCTTGGAGG
32870543 TGGACTA
1 TGGACTA
32870550 GAAGGTCCTG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
20 5 0.12
21 33 0.82
22 2 0.05
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (21 bp):
TGGACTAACTCCTCTTGGAGG
Found at i:32877527 original size:40 final size:40
Alignment explanation
Indices: 32877495--32877669 Score: 296
Period size: 40 Copynumber: 4.4 Consensus size: 40
32877485 CGGATGTAAC
* *
32877495 AACCAGCACGAATGCCTTCGGGACTTAACTCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
32877535 AACCCGTACGAATGCCTTCGGGACTTAACCCTGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
32877575 AACCTGCATGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
32877615 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
32877655 AACCCGCACGAATGC
1 AACCCGCACGAATGC
32877670 TATGCACATA
Statistics
Matches: 125, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 125 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:32887731 original size:47 final size:47
Alignment explanation
Indices: 32887677--32887870 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
32887667 TTAGGATTTT
** * *
32887677 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32887724 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32887771 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
32887818 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32887865 ATGTGA
1 ATGTGA
32887871 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:32887777 original size:22 final size:22
Alignment explanation
Indices: 32887706--32887777 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
32887696 GTATATATGA
32887706 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
32887728 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
32887753 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
32887775 GAT
1 GAT
32887778 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:32887826 original size:25 final size:25
Alignment explanation
Indices: 32887751--32887826 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
32887741 ATGCATATAT
32887751 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
32887776 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
32887798 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
32887823 GTGA
1 GTGA
32887827 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:32887999 original size:98 final size:96
Alignment explanation
Indices: 32887841--32888024 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 96
32887831 GAACATGCAT
*
32887841 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
32887906 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
32887937 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
32888001 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
32888025 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
97 2 0.02
98 53 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:32888040 original size:50 final size:48
Alignment explanation
Indices: 32887840--32888024 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
32887830 TGAACATGCA
32887840 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
32887888 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
32887936 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
32887986 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
32888025 GGCGATGTGC
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
47 1 0.01
48 81 0.63
49 4 0.03
50 41 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:32888279 original size:37 final size:37
Alignment explanation
Indices: 32888171--32888279 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
32888161 GGAAATATAT
*
32888171 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
32888208 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
32888245 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
32888280 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:32889821 original size:40 final size:40
Alignment explanation
Indices: 32889772--32889946 Score: 332
Period size: 40 Copynumber: 4.4 Consensus size: 40
32889762 CGGATGTAAC
*
32889772 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
32889812 AACCCGCACGAATGCCTTCGGGACTTAACCCTGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
32889852 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
32889892 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
32889932 AACCCGCACGAATGC
1 AACCCGCACGAATGC
32889947 TATGCACATA
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:32891102 original size:18 final size:18
Alignment explanation
Indices: 32891079--32891117 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
32891069 ATTTCTAACA
32891079 TGGGTTACCTAAAGAACT
1 TGGGTTACCTAAAGAACT
32891097 TGGGTTACCTAAAGAACT
1 TGGGTTACCTAAAGAACT
32891115 TGG
1 TGG
32891118 TAACTAGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (18 bp):
TGGGTTACCTAAAGAACT
Found at i:32897874 original size:49 final size:48
Alignment explanation
Indices: 32897798--32898077 Score: 300
Period size: 49 Copynumber: 5.7 Consensus size: 48
32897788 AGGGTGTAAT
*
32897798 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTATTGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCG-G
* * * *
32897847 GCCAATGCCATGTCCTAGACATGGTCTTACACTGACTATCGAAATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCG-G
32897896 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCG-G
** * * *
32897945 GCCGACACCATGTCCCAAACATGGTCTTACACT-AGCT-TTCACATATCCGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATTGA-A-AT-CGG
* * * * *
32897995 GCCAATGTCATGTCCCAGACATGGTCTTACATTGAC-ACCTCT-ATA-CGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTA--T-TGAAATCGG
32898043 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA
32898078 TACATCTCAT
Statistics
Matches: 197, Mismatches: 25, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
48 39 0.20
49 121 0.61
50 31 0.16
51 3 0.02
52 2 0.01
53 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGG
Found at i:32898065 original size:147 final size:147
Alignment explanation
Indices: 32897805--32898077 Score: 369
Period size: 147 Copynumber: 1.9 Consensus size: 147
32897795 AATGCCGATG
* *
32897805 CCATGTCCCAAACATGGTCTTACACTGACTATTGAAATCGAGGCCAATGCCATGTCCTAGACATG
1 CCATGTCCCAAACATGGTCTTACACTGACTATTCAAATCGAGGCCAATGCCATGTCCCAGACATG
*
32897870 GTCTTACACTGACTATCGAAATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTAT
66 GTCTTACACTGACTATCGAAATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTAT
32897935 TGAAATCGTGGCCGACA
131 TGAAATCGTGGCCGACA
* *
32897952 CCATGTCCCAAACATGGTCTTACACT-AGCT-TTCACATATCCG-TGCCAATGTCATGTCCCAGA
1 CCATGTCCCAAACATGGTCTTACACTGA-CTATTCA-A-AT-CGAGGCCAATGCCATGTCCCAGA
* * * *
32898014 CATGGTCTTACATTGAC-ACCTCTATA-CG-TGCCGATGCCATGTCCCAGACATGGTCTTACACT
62 CATGGTCTTACACTGACTA--TCGAAATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACT
32898076 GA
125 GA
32898078 TACATCTCAT
Statistics
Matches: 111, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
146 4 0.04
147 65 0.59
148 36 0.32
149 6 0.05
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (147 bp):
CCATGTCCCAAACATGGTCTTACACTGACTATTCAAATCGAGGCCAATGCCATGTCCCAGACATG
GTCTTACACTGACTATCGAAATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTAT
TGAAATCGTGGCCGACA
Found at i:32906238 original size:13 final size:14
Alignment explanation
Indices: 32906220--32906254 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
32906210 TTCTTTTCTC
32906220 TTTTTTTTGT-AAA
1 TTTTTTTTGTCAAA
32906233 TTTTTTTT-TCAAA
1 TTTTTTTTGTCAAA
32906246 TTTTTTTTG
1 TTTTTTTTG
32906255 CTAATATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 1 0.05
13 19 0.95
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.74
Consensus pattern (14 bp):
TTTTTTTTGTCAAA
Found at i:32911544 original size:40 final size:40
Alignment explanation
Indices: 32911493--32911586 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
32911483 CTCAGTATCG
*
32911493 CACACTTAGTGCCACATATAGCCGAAGCTAT-TCCAATTCA
1 CACACTAAGTGCCACATATAGCCGAAGCTATCTCCAA-TCA
*** * *
32911533 CACACTAAGTGCTTTATATAGCCGAAGCTATCTCGAATCG
1 CACACTAAGTGCCACATATAGCCGAAGCTATCTCCAATCA
32911573 CACACTAAGTGCCA
1 CACACTAAGTGCCA
32911587 AACATAGTTG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
40 41 0.91
41 4 0.09
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCACATATAGCCGAAGCTATCTCCAATCA
Found at i:32913413 original size:20 final size:19
Alignment explanation
Indices: 32913367--32913406 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
32913357 CCACTCCCAA
*
32913367 AGTATGTTTAGGCCCTCGT
1 AGTATGTTTAGGGCCTCGT
32913386 AGTATGTTTAGGGCCTCGT
1 AGTATGTTTAGGGCCTCGT
32913405 AG
1 AG
32913407 GCTTGTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.30, T:0.35
Consensus pattern (19 bp):
AGTATGTTTAGGGCCTCGT
Found at i:32914553 original size:20 final size:20
Alignment explanation
Indices: 32914530--32914575 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
32914520 CCAGCTCGAA
*
32914530 TTAGCTCACATGAGCTTAAT
1 TTAGCTCACATGAGCTCAAT
***
32914550 TTAGCTCGTTTGAGCTCAAT
1 TTAGCTCACATGAGCTCAAT
32914570 TTAGCT
1 TTAGCT
32914576 TACTTTAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
TTAGCTCACATGAGCTCAAT
Found at i:32914557 original size:30 final size:30
Alignment explanation
Indices: 32914522--32914595 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
32914512 AGTTTTTCCC
32914522 AGCTCGAATT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-ATTGAGCTCA-ATTGAGCTTAATTT
* * *
32914552 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGATTGAGCTCAATTGAGCTTAATTT
*
32914582 AGCTCGTTTGAGCT
1 AGCTCGATTGAGCT
32914596 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 36 0.92
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (30 bp):
AGCTCGATTGAGCTCAATTGAGCTTAATTT
Found at i:32917364 original size:6 final size:6
Alignment explanation
Indices: 32917331--32917438 Score: 65
Period size: 6 Copynumber: 17.7 Consensus size: 6
32917321 AAAGAAATTG
* * * ** *
32917331 AAAG-A AAACAA AAAGAA AACGAA GAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
32917378 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
32917429 AAAGAA AAAG
1 AAAGAA AAAG
32917439 TGAAAAAAGA
Statistics
Matches: 73, Mismatches: 26, Indels: 7
0.69 0.25 0.07
Matches are distributed among these distances:
5 3 0.04
6 59 0.81
7 7 0.10
8 4 0.05
ACGTcount: A:0.70, C:0.04, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:32917392 original size:18 final size:18
Alignment explanation
Indices: 32917335--32917393 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
32917325 AAATTGAAAG
* *
32917335 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAATCGA
* * *
32917353 AGAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAATCGA
32917371 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAATCGA
32917389 AAAAG
1 AAAAG
32917394 TGAGAGAAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.71, C:0.07, G:0.17, T:0.05
Consensus pattern (18 bp):
AAAAGAAAAAGAAATCGA
Found at i:32917445 original size:15 final size:13
Alignment explanation
Indices: 32917400--32917456 Score: 62
Period size: 14 Copynumber: 4.2 Consensus size: 13
32917390 AAAGTGAGAG
32917400 AAAAAGAAAATGA
1 AAAAAGAAAATGA
32917413 AGAAAAGAAAATTG-
1 A-AAAAGAAAA-TGA
32917427 AAAAAGAAAAAGTGA
1 AAAAAG-AAAA-TGA
*
32917442 AAAAAGAAATTGA
1 AAAAAGAAAATGA
32917455 AA
1 AA
32917457 GAGAGCTTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
13 11 0.29
14 19 0.50
15 8 0.21
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.11
Consensus pattern (13 bp):
AAAAAGAAAATGA
Found at i:32917454 original size:27 final size:27
Alignment explanation
Indices: 32917399--32917456 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 27
32917389 AAAAGTGAGA
32917399 GAAAAAGAAAATGAAGAAAAGAAAATT
1 GAAAAAGAAAATGAAGAAAAGAAAATT
32917426 GAAAAAGAAAAAGTGAA-AAAAG-AAATT
1 GAAAAAG-AAAA-TGAAGAAAAGAAAATT
32917453 GAAA
1 GAAA
32917457 GAGAGCTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
27 16 0.55
28 9 0.31
29 4 0.14
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (27 bp):
GAAAAAGAAAATGAAGAAAAGAAAATT
Found at i:32917490 original size:33 final size:33
Alignment explanation
Indices: 32917453--32917515 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
32917443 AAAAGAAATT
32917453 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTGT-AAAAGAAA-CAAGTGAAAAA
*
32917486 GAAAGAGAGTCTGTAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTGTAAAAGAAACAAGTGAA
32917516 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.27, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTGTAAAAGAAACAAGTGAAAAA
Found at i:32919320 original size:20 final size:20
Alignment explanation
Indices: 32919297--32919342 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
32919287 CCAGCTCGAA
*
32919297 TTAGCTCACATGAGCTTAAT
1 TTAGCTCACATGAGCTCAAT
***
32919317 TTAGCTCGTTTGAGCTCAAT
1 TTAGCTCACATGAGCTCAAT
32919337 TTAGCT
1 TTAGCT
32919343 TACTTTATCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
TTAGCTCACATGAGCTCAAT
Found at i:32919333 original size:30 final size:30
Alignment explanation
Indices: 32919299--32919362 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
32919289 AGCTCGAATT
32919299 AGCTCACA-TGAGCTTAATTTAGCTCGTTTG
1 AGCTCA-ATTGAGCTTAATTTAGCTCGTTTG
* * *
32919329 AGCTCAATTTAGCTTACTTTATCTCGTTTG
1 AGCTCAATTGAGCTTAATTTAGCTCGTTTG
32919359 AGCT
1 AGCT
32919363 TGGCTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 1 0.03
30 29 0.97
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (30 bp):
AGCTCAATTGAGCTTAATTTAGCTCGTTTG
Found at i:32921892 original size:17 final size:18
Alignment explanation
Indices: 32921865--32921900 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
32921855 AAAACAATTA
32921865 TCTAGATGCAAAATAATC
1 TCTAGATGCAAAATAATC
*
32921883 TCTA-ATGCAAATTAATC
1 TCTAGATGCAAAATAATC
32921900 T
1 T
32921901 AAGTGTGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (18 bp):
TCTAGATGCAAAATAATC
Found at i:32925174 original size:131 final size:130
Alignment explanation
Indices: 32924941--32925178 Score: 395
Period size: 131 Copynumber: 1.8 Consensus size: 130
32924931 AAAAAAAACG
* *
32924941 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGCAAAGCGCCGCTAAAGGTCAAGGCTTTTA
1 CCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTA
* *
32925006 GCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGTGGCGTTTGTGGTAAAAGCA
66 GCGGCGTTTGTGCGAAAAGCGCCGCTAAACGTCAAGGCTTTTTAGTGGCGTTTGTGGTAAAAGCA
* *
32925071 CCGCTAAACGTCAAGGCTTTTTAGCGGCGTTTGTGGTAAAAGTGCCGCTAAAGGTCAAGGCTTTT
1 CCGCTAAACGTCAAGGC-TTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTT
* *
32925136 AGCGGCGTTTGTGCGTAAAGCGCCGCTAAACGTTAAGGCTTTT
65 AGCGGCGTTTGTGCGAAAAGCGCCGCTAAACGTCAAGGCTTTT
32925179 AGCGGCGCTT
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
130 16 0.16
131 83 0.84
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (130 bp):
CCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTA
GCGGCGTTTGTGCGAAAAGCGCCGCTAAACGTCAAGGCTTTTTAGTGGCGTTTGTGGTAAAAGCA
Found at i:32925208 original size:43 final size:43
Alignment explanation
Indices: 32924934--32925185 Score: 380
Period size: 43 Copynumber: 5.8 Consensus size: 43
32924924 TTATTGGAAA
* *
32924934 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGT
* *
32924977 CAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGT
*
32925020 AAAAGCGCCGCTAAAGGTCAAGGCTTTTTAGTGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGTGGT
* *
32925064 AAAAGCACCGCTAAACGTCAAGGCTTTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGTGGT
*
32925108 AAAAGTGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTG-GT
* *
32925152 -AAAGCGCCGCTAAACGTTAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
32925186 CTTTTTTTAC
Statistics
Matches: 193, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
43 112 0.58
44 81 0.42
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGT
Found at i:32925295 original size:31 final size:31
Alignment explanation
Indices: 32925260--32925340 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
32925250 CTTCCTGCAT
* *
32925260 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
32925291 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
32925322 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
32925341 TATTAATTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 26 0.65
33 14 0.35
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:32931277 original size:9 final size:9
Alignment explanation
Indices: 32931263--32931533 Score: 179
Period size: 9 Copynumber: 29.6 Consensus size: 9
32931253 TATTTAAGTA
32931263 TTATGTAAG
1 TTATGTAAG
*
32931272 TTATGTAAT
1 TTATGTAAG
*
32931281 TTATGATATG
1 TTATG-TAAG
* * *
32931291 ATATAT-AT
1 TTATGTAAG
*
32931299 TTATGTAAA
1 TTATGTAAG
* *
32931308 TTATAT-AT
1 TTATGTAAG
*
32931316 TTATCTAAG
1 TTATGTAAG
*
32931325 TTATATAAG
1 TTATGTAAG
32931334 TTATGTAAG
1 TTATGTAAG
*
32931343 TTATGTAAA
1 TTATGTAAG
*
32931352 TTATGATATAAAA
1 TTATG---T-AAG
*
32931365 TATATTTAAG
1 T-TATGTAAG
32931375 TATTATGTAAG
1 --TTATGTAAG
32931386 TTATGTAAG
1 TTATGTAAG
* *
32931395 TTATAT-AT
1 TTATGTAAG
*
32931403 TTATCTAAG
1 TTATGTAAG
*
32931412 TTATATAAG
1 TTATGTAAG
*
32931421 TTATATAAG
1 TTATGTAAG
*
32931430 TTATGTATG
1 TTATGTAAG
*
32931439 TTATATAAG
1 TTATGTAAG
32931448 TTATGTAAG
1 TTATGTAAG
* *
32931457 TTATATATG
1 TTATGTAAG
*
32931466 TTATATAAG
1 TTATGTAAG
*
32931475 TTATTTAAG
1 TTATGTAAG
*
32931484 TTATATAAG
1 TTATGTAAG
*
32931493 TTATATAAG
1 TTATGTAAG
*
32931502 TTATGTACG
1 TTATGTAAG
*
32931511 TTTTGTAAG
1 TTATGTAAG
* *
32931520 TTATATAAA
1 TTATGTAAG
32931529 TTATG
1 TTATG
32931534 ATATCAAATA
Statistics
Matches: 208, Mismatches: 43, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
8 16 0.08
9 168 0.81
10 7 0.03
11 8 0.04
12 2 0.01
13 4 0.02
14 3 0.01
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:32931342 original size:18 final size:18
Alignment explanation
Indices: 32931263--32931523 Score: 204
Period size: 18 Copynumber: 14.2 Consensus size: 18
32931253 TATTTAAGTA
* *
32931263 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
32931281 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
32931299 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
32931316 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
32931334 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
32931352 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
32931375 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
32931395 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
32931412 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
32931430 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
32931448 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* *
32931466 TTATATAAGTTATTTAAG
1 TTATGTAAGTTATATAAG
*
32931484 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* * *
32931502 TTATGTACGTTTTGTAAG
1 TTATGTAAGTTATATAAG
32931520 TTAT
1 TTAT
32931524 ATAAATTATG
Statistics
Matches: 199, Mismatches: 34, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
17 37 0.19
18 129 0.65
19 7 0.04
20 7 0.04
21 4 0.02
22 4 0.02
23 6 0.03
25 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:32931355 original size:27 final size:27
Alignment explanation
Indices: 32931316--32931533 Score: 213
Period size: 27 Copynumber: 7.9 Consensus size: 27
32931306 AATTATATAT
*
32931316 TTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
32931343 TTATGTAAATTATGATATAAAATATATTTAAG
1 TTATGT-AAGT-T-ATAT-AAGT-TATGTAAG
* * *
32931375 TATTATGTAAGTTATGTAAGTTATAT-AT
1 --TTATGTAAGTTATATAAGTTATGTAAG
* *
32931403 TTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
*
32931430 TTATGTATGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
32931457 TTATATATGTTATATAAGTTATTTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* *
32931484 TTATATAAGTTATATAAGTTATGTACG
1 TTATGTAAGTTATATAAGTTATGTAAG
* *
32931511 TTTTGTAAGTTATATAAATTATG
1 TTATGTAAGTTATATAAGTTATG
32931534 ATATCAAATA
Statistics
Matches: 160, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
26 22 0.14
27 99 0.62
28 4 0.03
29 5 0.03
30 7 0.04
31 6 0.04
32 8 0.05
33 3 0.02
34 6 0.04
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATATAAGTTATGTAAG
Found at i:32931373 original size:114 final size:114
Alignment explanation
Indices: 32931239--32931460 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
32931229 ACTAGTTATG
* * * *
32931239 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* *
32931303 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
* *
32931353 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* * *
32931418 AAGTTATATAAGTTATGTATGTTATATAAGTTATGTAAGTTAT
66 AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTAT
32931461 ATATGTTATA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 4 0.04
113 18 0.19
114 73 0.77
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
Found at i:32931657 original size:15 final size:15
Alignment explanation
Indices: 32931637--32931692 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
32931627 AAGTAGCGGG
32931637 ATTAAATAATATTTA
1 ATTAAATAATATTTA
32931652 ATTAAATAATATTT-
1 ATTAAATAATATTTA
32931666 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
32931681 ATTAAGTAATAT
1 ATTAAATAATAT
32931693 ACATGCCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:32932489 original size:290 final size:288
Alignment explanation
Indices: 32931901--32932606 Score: 1358
Period size: 290 Copynumber: 2.4 Consensus size: 288
32931891 ATAAAACGGA
32931901 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
32931966 CTCGATATAAGGCAACCCGTTAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAA-ATTTAAATA
32932031 TTAAAATCAAACATTATTAATATAAAAAATAGTATTTTGAATATAATAATATCAAAAAAGAATCG
130 TTAAAATCAAACATTATTAATATAAAAAATAGTATTTTGAATATAATAATATCAAAAAAGAATCG
32932096 TAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGA
195 TAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGA
32932161 GCTCGATAGAACTTTTTTCAAGTCTTTTT
260 GCTCGATAGAACTTTTTTCAAGTCTTTTT
*
32932190 GATTTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
32932255 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTTAAAAATTTAAATA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATC-TTTAAAAATTTAAATA
32932320 TTAAAATCAAACATTATTAATATAAAAAAATAGTATTTTGAATATAATAATATCAAAAAAGAATC
130 TTAAAATCAAACATTATTAATAT-AAAAAATAGTATTTTGAATATAATAATATCAAAAAAGAATC
32932385 GTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATG
194 GTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATG
32932450 AGCTCGATAGAACTTTTTTCAAGTCTTTTT
259 AGCTCGATAGAACTTTTTTCAAGTCTTTTT
32932480 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
32932545 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAATATTTAAA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAATTTAAA
32932607 ACAAGGTTGG
Statistics
Matches: 411, Mismatches: 4, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
289 156 0.38
290 255 0.62
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.37
Consensus pattern (288 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAATTTAAATAT
TAAAATCAAACATTATTAATATAAAAAATAGTATTTTGAATATAATAATATCAAAAAAGAATCGT
AGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGAG
CTCGATAGAACTTTTTTCAAGTCTTTTT
Found at i:32937685 original size:44 final size:44
Alignment explanation
Indices: 32937561--32937685 Score: 130
Period size: 45 Copynumber: 2.8 Consensus size: 44
32937551 AGTTTTTAGC
* *
32937561 GGCGTTTTACCTGAAAGCGTTCGCTAATGCTGCTGGCTTTGTAGCGT
1 GGCGTTTTACCT-AAAGCG-ACGCTAATGCT-CTGGCTTTGTAGCGA
*
32937608 GGCGTTTTACTTAAAGCGACGCTAATGCGTCTGGCTTT-TAAGC-A
1 GGCGTTTTACCTAAAGCGACGCTAATGC-TCTGGCTTTGT-AGCGA
*
32937652 GGC-TTTTACCCTAAAGCGCCGCCTAATGCTCTGG
1 GGCGTTTTA-CCTAAAGCGACG-CTAATGCTCTGG
32937686 ATTTAGCGGC
Statistics
Matches: 69, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
43 5 0.07
44 19 0.28
45 27 0.39
46 7 0.10
47 11 0.16
ACGTcount: A:0.18, C:0.24, G:0.26, T:0.31
Consensus pattern (44 bp):
GGCGTTTTACCTAAAGCGACGCTAATGCTCTGGCTTTGTAGCGA
Found at i:32943208 original size:12 final size:12
Alignment explanation
Indices: 32943191--32943217 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32943181 TGTTGCATGG
32943191 GATTGGGGTATT
1 GATTGGGGTATT
32943203 GATTGGGGTATT
1 GATTGGGGTATT
32943215 GAT
1 GAT
32943218 GGAGGAGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.41
Consensus pattern (12 bp):
GATTGGGGTATT
Found at i:32959144 original size:40 final size:40
Alignment explanation
Indices: 32959107--32959331 Score: 237
Period size: 40 Copynumber: 5.7 Consensus size: 40
32959097 GCTACTCGTT
*
32959107 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
32959147 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
32959187 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-ACTCGCA
* * * *
32959226 CAACTGCCTTC-GGATCTTAGTCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* *** * *
32959266 CAAATGCCTTC-GGATCTTAGTCCGGATACGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
32959307 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32959332 CATCATTCGA
Statistics
Matches: 160, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 115 0.72
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:32959218 original size:79 final size:78
Alignment explanation
Indices: 32959107--32959331 Score: 233
Period size: 79 Copynumber: 2.8 Consensus size: 78
32959097 GCTACTCGTT
* * *
32959107 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
32959172 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * *
32959187 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTATA-TCGCACAACTGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGG-ATTAGTA-ACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
32959250 GAATTAGTATCTCGCA
63 GAATTAGTAACTCGCA
* * * *
32959266 CAAATGCCTTCGGATCTTAGTCCGGA-TACGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGGATTA--GTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
32959329 GGA
62 GGA
32959332 CATCATTCGA
Statistics
Matches: 121, Mismatches: 15, Indels: 18
0.79 0.10 0.12
Matches are distributed among these distances:
78 5 0.04
79 64 0.53
80 42 0.35
81 10 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:32967183 original size:11 final size:11
Alignment explanation
Indices: 32967167--32967191 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32967157 TTTATCAACC
32967167 TCTATTCCATG
1 TCTATTCCATG
32967178 TCTATTCCATG
1 TCTATTCCATG
32967189 TCT
1 TCT
32967192 TCTCCGCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.28, G:0.08, T:0.48
Consensus pattern (11 bp):
TCTATTCCATG
Found at i:32971634 original size:61 final size:61
Alignment explanation
Indices: 32971565--32971687 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
32971555 GTGAATACAT
*
32971565 TGAAAGGTGATGGAATGAATTCATGATGTGAAAATATGATATGAAATAATGATGCATGAAA
1 TGAAAGGTGATGGAATGAATTCATGATGTGAAAATATGATATGAAACAATGATGCATGAAA
32971626 TGAAAGGTGATGGAATGAATTCATGATGTGAAAATATGATATGAAACAATGATGCATGAAA
1 TGAAAGGTGATGGAATGAATTCATGATGTGAAAATATGATATGAAACAATGATGCATGAAA
32971687 T
1 T
32971688 TCAAGAGAAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.44, C:0.04, G:0.24, T:0.28
Consensus pattern (61 bp):
TGAAAGGTGATGGAATGAATTCATGATGTGAAAATATGATATGAAACAATGATGCATGAAA
Found at i:32973607 original size:29 final size:29
Alignment explanation
Indices: 32973573--32973646 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
32973563 TCATCAACCA
*
32973573 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
* **
32973602 CGCACACTCAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
32973631 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
32973647 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:32979641 original size:30 final size:30
Alignment explanation
Indices: 32979607--32979670 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 30
32979597 CACGAGCAGA
*
32979607 GACATGG-TCGTGTGTCTTAGCTGTGTGGAT
1 GACATGGCT-GTGTGTCTCAGCTGTGTGGAT
32979637 GACATGGCTGTGTGTCTCAGCTGTGTGGAT
1 GACATGGCTGTGTGTCTCAGCTGTGTGGAT
32979667 GACA
1 GACA
32979671 CGGCCTAGCA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 31 0.97
31 1 0.03
ACGTcount: A:0.16, C:0.16, G:0.36, T:0.33
Consensus pattern (30 bp):
GACATGGCTGTGTGTCTCAGCTGTGTGGAT
Found at i:32979801 original size:22 final size:22
Alignment explanation
Indices: 32979773--32979825 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
32979763 ATGTTGATGG
32979773 CACACGGGCATGCCCCTGTGTC
1 CACACGGGCATGCCCCTGTGTC
32979795 CACACGGGCATGCCCCTGTGTC
1 CACACGGGCATGCCCCTGTGTC
32979817 CACACGGGC
1 CACACGGGC
32979826 GTGTGACCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.15, C:0.42, G:0.28, T:0.15
Consensus pattern (22 bp):
CACACGGGCATGCCCCTGTGTC
Found at i:32988374 original size:27 final size:26
Alignment explanation
Indices: 32988326--32988385 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
32988316 GCGAGGCTGC
*
32988326 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAG-TA
* * *
32988353 CAGATATTGTGGCTAGGCCACCAGTA
1 CAGATATTGTGACGAAGCCACCAGTA
32988379 CAGATAT
1 CAGATAT
32988386 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 9 0.31
27 20 0.69
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGTA
Found at i:32988472 original size:27 final size:26
Alignment explanation
Indices: 32988425--32988475 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
32988415 CGAGGCTGCC
*
32988425 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
32988451 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
32988476 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:32993741 original size:28 final size:28
Alignment explanation
Indices: 32993703--32993809 Score: 133
Period size: 28 Copynumber: 3.8 Consensus size: 28
32993693 GAATCATTTG
* * *
32993703 ATATTTTGCACACGAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
32993731 ATATCTCGCACACTAACTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
32993759 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
32993787 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
32993810 ATTTGATTGC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:32997844 original size:50 final size:50
Alignment explanation
Indices: 32997769--32997895 Score: 182
Period size: 50 Copynumber: 2.5 Consensus size: 50
32997759 CCATGGCAAC
32997769 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
* * * *
32997819 AAGTGGTAAGTGATATCTTCGGCTACACTTATCTGATCAATGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
* * *
32997869 CAACTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
32997896 CTGATCAGTG
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 46 0.69
51 21 0.31
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
Found at i:32997911 original size:31 final size:31
Alignment explanation
Indices: 32997873--32998019 Score: 233
Period size: 31 Copynumber: 4.7 Consensus size: 31
32997863 AAATGACAAC
32997873 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
32997904 TGAAAAGTGGTAGCTTCTGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
32997935 TGAAAAGTGGTAGCTCCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
32997966 TGAAAAATGGTAGC-TCTGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTC-GGCTACCTGATCAG
*
32997997 TGAATAGTGGTAGCTTCGGCTAC
1 TGAAAAGTGGTAGCTTCGGCTAC
32998020 AAGTGACAAG
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
30 1 0.01
31 103 0.97
32 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Done.