Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 107 of 253
Found at i:33394881 original size:45 final size:45
Alignment explanation
Indices: 33394817--33395029 Score: 336
Period size: 45 Copynumber: 4.7 Consensus size: 45
33394807 TATTATTCAA
* *
33394817 GCCTTCGAGCCTAGCAGGCTATAATACCGGTGAGATACTATTTGG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGG
* * *
33394862 GCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGATACTATTTGG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGG
* * *
33394907 GCCTTCGACCCTAGCAGGCTATAATGCCGATGAGATGCTATTCGG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGG
*
33394952 GCCTTCGAGCTTAGCAGGCTATAATGCCGGTGAGATACTATTCGG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGG
*
33394997 GCTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
33395030 ATGAATTCAG
Statistics
Matches: 153, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 153 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (45 bp):
GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGG
Found at i:33401427 original size:31 final size:31
Alignment explanation
Indices: 33401392--33401468 Score: 154
Period size: 31 Copynumber: 2.5 Consensus size: 31
33401382 CTTCCTGATT
33401392 AAATCCAACCAAAAATAGCAAATATAGCATG
1 AAATCCAACCAAAAATAGCAAATATAGCATG
33401423 AAATCCAACCAAAAATAGCAAATATAGCATG
1 AAATCCAACCAAAAATAGCAAATATAGCATG
33401454 AAATCCAACCAAAAA
1 AAATCCAACCAAAAA
33401469 CATTAAATCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.57, C:0.21, G:0.08, T:0.14
Consensus pattern (31 bp):
AAATCCAACCAAAAATAGCAAATATAGCATG
Found at i:33401727 original size:21 final size:21
Alignment explanation
Indices: 33401703--33401743 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
33401693 TCTACTGCCA
*
33401703 TCGTTGCTACCTCTGCCTCCT
1 TCGTTGCTACCGCTGCCTCCT
*
33401724 TCGTTGTTACCGCTGCCTCC
1 TCGTTGCTACCGCTGCCTCC
33401744 CTCTCTACTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.41, G:0.17, T:0.37
Consensus pattern (21 bp):
TCGTTGCTACCGCTGCCTCCT
Found at i:33402193 original size:13 final size:14
Alignment explanation
Indices: 33402167--33402195 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
33402157 ACTAATGACG
33402167 AATTAAAGCATTAT
1 AATTAAAGCATTAT
33402181 AATTAAA-CATTAT
1 AATTAAAGCATTAT
33402194 AA
1 AA
33402196 ATATTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.34
Consensus pattern (14 bp):
AATTAAAGCATTAT
Found at i:33407274 original size:9 final size:9
Alignment explanation
Indices: 33407260--33407416 Score: 85
Period size: 9 Copynumber: 18.0 Consensus size: 9
33407250 TTACGTAAGT
*
33407260 TAAGTTTTG
1 TAAGTTATG
33407269 TAAGTTATG
1 TAAGTTATG
33407278 TAAGTTATG
1 TAAGTTATG
* *
33407287 ATATGCTAT-
1 -TAAGTTATG
* *
33407296 AAATTTATG
1 TAAGTTATG
*
33407305 TAAGGTATG
1 TAAGTTATG
33407314 TAAGTTATG
1 TAAGTTATG
*
33407323 TAAATTATG
1 TAAGTTATG
* ** *
33407332 ATATGAAATA
1 -TAAGTTATG
*
33407342 T-ATTTATG
1 TAAGTTATG
**
33407350 T-A-TTACA
1 TAAGTTATG
*
33407357 TAATTTATG
1 TAAGTTATG
*
33407366 TAAGTTATA
1 TAAGTTATG
*
33407375 T-ATTTATG
1 TAAGTTATG
33407383 T-A-TTATG
1 TAAGTTATG
*
33407390 TAAGTTTTG
1 TAAGTTATG
33407399 TAAGTTATG
1 TAAGTTATG
33407408 TAAGTTATG
1 TAAGTTATG
33407417 ATATGATATA
Statistics
Matches: 109, Mismatches: 32, Indels: 14
0.70 0.21 0.09
Matches are distributed among these distances:
7 10 0.09
8 17 0.16
9 72 0.66
10 10 0.09
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:33407377 original size:33 final size:33
Alignment explanation
Indices: 33407339--33407406 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
33407329 ATGATATGAA
33407339 ATATATTTATGTATTACATAA-TTTATGTAAGTT
1 ATATATTTATGTATTACATAAGTTT-TGTAAGTT
**
33407372 ATATATTTATGTATTATGTAAGTTTTGTAAGTT
1 ATATATTTATGTATTACATAAGTTTTGTAAGTT
33407405 AT
1 AT
33407407 GTAAGTTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 29 0.91
34 3 0.09
ACGTcount: A:0.34, C:0.01, G:0.12, T:0.53
Consensus pattern (33 bp):
ATATATTTATGTATTACATAAGTTTTGTAAGTT
Found at i:33407381 original size:17 final size:16
Alignment explanation
Indices: 33407339--33407388 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
33407329 ATGATATGAA
33407339 ATATATTTATGT-ATT
1 ATATATTTATGTAATT
*
33407354 ACATAATTTATGTAAGTT
1 ATAT-ATTTATGTAA-TT
33407372 ATATATTTATGT-ATT
1 ATATATTTATGTAATT
33407387 AT
1 AT
33407389 GTAAGTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 7 0.23
16 9 0.30
17 9 0.30
18 5 0.17
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.54
Consensus pattern (16 bp):
ATATATTTATGTAATT
Found at i:33407401 original size:85 final size:88
Alignment explanation
Indices: 33407273--33407432 Score: 236
Period size: 85 Copynumber: 1.9 Consensus size: 88
33407263 GTTTTGTAAG
33407273 TTATGTAAGTTATGATATGCTATAAATTTATGTAAGGTATGTAAGTTATGTAAATTATGATATGA
1 TTATGTAAGTTATGATATGCTATAAATTTATGTAAGGTATGTAAGTTATGTAAATTATGATATGA
33407338 AATATATTTATGTATTACATAAT
66 AATATATTTATGTATTACATAAT
* ** * * *
33407361 TTATGTAAGTTAT-ATAT-TTATGTA-TTATGTAAGTTTTGTAAGTTATGTAAGTTATGATATGA
1 TTATGTAAGTTATGATATGCTATAAATTTATGTAAGGTATGTAAGTTATGTAAATTATGATATGA
*
33407423 TATATATTTA
66 AATATATTTA
33407433 ACATTAAGAT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
85 44 0.68
86 4 0.06
87 4 0.06
88 13 0.20
ACGTcount: A:0.36, C:0.01, G:0.15, T:0.47
Consensus pattern (88 bp):
TTATGTAAGTTATGATATGCTATAAATTTATGTAAGGTATGTAAGTTATGTAAATTATGATATGA
AATATATTTATGTATTACATAAT
Found at i:33408096 original size:12 final size:13
Alignment explanation
Indices: 33408079--33408109 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
33408069 TAAATTTATT
33408079 AAAAATAG-TAAA
1 AAAAATAGATAAA
33408091 AAAAATAGATAAA
1 AAAAATAGATAAA
33408104 AAAAAT
1 AAAAAT
33408110 TCATGTGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.16
Consensus pattern (13 bp):
AAAAATAGATAAA
Found at i:33411636 original size:41 final size:41
Alignment explanation
Indices: 33411591--33411669 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
33411581 GCGTTTGGAT
*
33411591 AAAAAATGGCGCTATATATCAACTTTTT-GCGGCGTTTGTTA
1 AAAAAATGCCGCTATATATC-ACTTTTTAGCGGCGTTTGTTA
* * *
33411632 AAAAAATGCCGCTATTTCTCAGTTTTTAGCGGCGTTTG
1 AAAAAATGCCGCTATATATCACTTTTTAGCGGCGTTTG
33411670 GACTATAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 6 0.18
41 27 0.82
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (41 bp):
AAAAAATGCCGCTATATATCACTTTTTAGCGGCGTTTGTTA
Found at i:33411684 original size:41 final size:41
Alignment explanation
Indices: 33411633--33411822 Score: 236
Period size: 41 Copynumber: 4.6 Consensus size: 41
33411623 CGTTTGTTAA
*
33411633 AAAAATGCCGCTATTTCTCAGTTTTTAGCGGCGTTTGGACT
1 AAAAACGCCGCTATTTCTCAGTTTTTAGCGGCGTTTGGACT
* * * * * *
33411674 ATAAACGCCGCTATTTCTGAGTTTTTAGCTGCATTTGAACC
1 AAAAACGCCGCTATTTCTCAGTTTTTAGCGGCGTTTGGACT
* * * *
33411715 AAAAACACCGCTATTTCTGAGCTTTTAGCAGCGTTTGGACT
1 AAAAACGCCGCTATTTCTCAGTTTTTAGCGGCGTTTGGACT
* * *
33411756 AAAAACGCCACTATTGCTCAGTTTTTAGCGGCGTTTGGATT
1 AAAAACGCCGCTATTTCTCAGTTTTTAGCGGCGTTTGGACT
* *
33411797 AAAAACGCCGATATTGCTCAGTTTTT
1 AAAAACGCCGCTATTTCTCAGTTTTT
33411823 TGCAACGTTT
Statistics
Matches: 126, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 126 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (41 bp):
AAAAACGCCGCTATTTCTCAGTTTTTAGCGGCGTTTGGACT
Found at i:33411686 original size:82 final size:81
Alignment explanation
Indices: 33411581--33411792 Score: 189
Period size: 82 Copynumber: 2.6 Consensus size: 81
33411571 ATTTTTTATG
* * * **
33411581 GCGTTTGGA-TAAAAAATGGCGCTATATATC-AACTTTTT-GCGGCGTTTGTTAA-AAAAATGCC
1 GCGTTTGGACT-AAAAACGCCGCTAT-T-TCTAACTTTTTAGCGGCATTTG--AACAAAAACACC
* *
33411642 GCTATTTCTCAGTTTTTAGCG
61 GCTATTTCTCAGCTTTTAGCA
* * * *
33411663 GCGTTTGGACTATAAACGCCGCTATTTCTGAGTTTTTAGCTGCATTTGAACCAAAAACACCGCTA
1 GCGTTTGGACTAAAAACGCCGCTATTTCTAACTTTTTAGCGGCATTTGAA-CAAAAACACCGCTA
*
33411728 TTTCTGAGCTTTTAGCA
65 TTTCTCAGCTTTTAGCA
* * * * *
33411745 GCGTTTGGACTAAAAACGCCACTATTGCTCAGTTTTTAGCGGCGTTTG
1 GCGTTTGGACTAAAAACGCCGCTATTTCTAACTTTTTAGCGGCATTTG
33411793 GATTAAAAAC
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
80 4 0.04
81 7 0.07
82 95 0.89
83 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (81 bp):
GCGTTTGGACTAAAAACGCCGCTATTTCTAACTTTTTAGCGGCATTTGAACAAAAACACCGCTAT
TTCTCAGCTTTTAGCA
Found at i:33411832 original size:41 final size:41
Alignment explanation
Indices: 33411633--33411849 Score: 229
Period size: 41 Copynumber: 5.3 Consensus size: 41
33411623 CGTTTGTTAA
* *
33411633 AAAAATGCCGCTATTTCTCAGTTTTTAGCGGCGTTTGGACT
1 AAAAACGCCGCTATTTCTCAGTTTTTAGCAGCGTTTGGACT
* * * * * *
33411674 ATAAACGCCGCTATTTCTGAGTTTTTAGCTGCATTTGAACC
1 AAAAACGCCGCTATTTCTCAGTTTTTAGCAGCGTTTGGACT
* * *
33411715 AAAAACACCGCTATTTCTGAGCTTTTAGCAGCGTTTGGACT
1 AAAAACGCCGCTATTTCTCAGTTTTTAGCAGCGTTTGGACT
* * * *
33411756 AAAAACGCCACTATTGCTCAGTTTTTAGCGGCGTTTGGATT
1 AAAAACGCCGCTATTTCTCAGTTTTTAGCAGCGTTTGGACT
* * * * *
33411797 AAAAACGCCGATATTGCTCAGTTTTTTGCAACGTTT-TACT
1 AAAAACGCCGCTATTTCTCAGTTTTTAGCAGCGTTTGGACT
* *
33411837 GAAAACGCTGCTA
1 AAAAACGCCGCTA
33411850 ATGCATAATA
Statistics
Matches: 145, Mismatches: 31, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
40 12 0.08
41 133 0.92
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (41 bp):
AAAAACGCCGCTATTTCTCAGTTTTTAGCAGCGTTTGGACT
Found at i:33412714 original size:36 final size:36
Alignment explanation
Indices: 33412640--33412715 Score: 107
Period size: 36 Copynumber: 2.1 Consensus size: 36
33412630 ATTAACATCG
* *
33412640 AATAGGATAATAGTTTATGTTGCATTTTATCTTCAT
1 AATAGGATAATAGTTTATGTCGCATTTTATATTCAT
* * *
33412676 AATAGGATAATTGTTTATGTCGCATTTTTTATTTAT
1 AATAGGATAATAGTTTATGTCGCATTTTATATTCAT
33412712 AATA
1 AATA
33412716 TATATTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.07, G:0.13, T:0.49
Consensus pattern (36 bp):
AATAGGATAATAGTTTATGTCGCATTTTATATTCAT
Found at i:33413059 original size:16 final size:17
Alignment explanation
Indices: 33413040--33413077 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
33413030 AAAAAAATTT
33413040 TAAATTT-TTAAAAAAA
1 TAAATTTATTAAAAAAA
**
33413056 TAAATTTATTTTAAAAA
1 TAAATTTATTAAAAAAA
33413073 TAAAT
1 TAAAT
33413078 CCAGATGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATTTATTAAAAAAA
Found at i:33413720 original size:21 final size:21
Alignment explanation
Indices: 33413676--33413720 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
33413666 TAAATTTCAT
*
33413676 TTTTTTTATATCTTTTAATGA
1 TTTTTTTATATCTTTTAATAA
* * *
33413697 TTTTTTTATGTTTTTTTATAA
1 TTTTTTTATATCTTTTAATAA
33413718 TTT
1 TTT
33413721 CTAAAAGAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (21 bp):
TTTTTTTATATCTTTTAATAA
Found at i:33415678 original size:24 final size:25
Alignment explanation
Indices: 33415641--33415695 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 25
33415631 TATTATTTTA
33415641 ATTTTAGAATATAT-ATATATATTGTT
1 ATTTTAGAATATATGAT-TATA-TGTT
*
33415667 TTTTTA-AA-ATATGATTATATGTT
1 ATTTTAGAATATATGATTATATGTT
33415690 ATTTTA
1 ATTTTA
33415696 CTAATCTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 9 0.35
24 8 0.31
25 4 0.15
26 5 0.19
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.56
Consensus pattern (25 bp):
ATTTTAGAATATATGATTATATGTT
Found at i:33415694 original size:26 final size:26
Alignment explanation
Indices: 33415642--33415694 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33415632 ATTATTTTAA
* *
33415642 TTTTAGAATATATATATATATTGTTT
1 TTTTAAAATATATATATATATTATTT
*
33415668 TTTTAAAATATGAT-TATATGTTATTT
1 TTTTAAAATAT-ATATATATATTATTT
33415694 T
1 T
33415695 ACTAATCTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (26 bp):
TTTTAAAATATATATATATATTATTT
Found at i:33415765 original size:66 final size:66
Alignment explanation
Indices: 33415693--33415831 Score: 269
Period size: 66 Copynumber: 2.1 Consensus size: 66
33415683 ATATGTTATT
33415693 TTACTAATCTTGTTTACATAATTTGAAATTTTTATTGATGAGAGATAATTTCTTATATATTTTGA
1 TTACTAATCTTGTTTACATAATTTGAAATTTTTATTGATGAGAGATAATTTCTTATATATTTTGA
33415758 C
66 C
33415759 TTACTAATCTTGTTTACATAATTTGAAATTTTTATTGATGAGAGATAATTTCTTATATATTTTGA
1 TTACTAATCTTGTTTACATAATTTGAAATTTTTATTGATGAGAGATAATTTCTTATATATTTTGA
33415824 C
66 C
*
33415825 CTACTAA
1 TTACTAA
33415832 ATGATTAACT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 72 1.00
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (66 bp):
TTACTAATCTTGTTTACATAATTTGAAATTTTTATTGATGAGAGATAATTTCTTATATATTTTGA
C
Found at i:33416083 original size:29 final size:28
Alignment explanation
Indices: 33416051--33416117 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 28
33416041 ATCTTAATAT
*
33416051 TAACAATATTTTTTAATACTTTTTTGAAC
1 TAAC-ATATTTTTTAATAATTTTTTGAAC
*
33416080 TAACCGTATTTTTTAATAATTTTTTGAAC
1 TAA-CATATTTTTTAATAATTTTTTGAAC
33416109 TAACATATT
1 TAACATATT
33416118 ATATACAACT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 5 0.15
29 28 0.82
30 1 0.03
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.51
Consensus pattern (28 bp):
TAACATATTTTTTAATAATTTTTTGAAC
Found at i:33416898 original size:17 final size:17
Alignment explanation
Indices: 33416873--33416930 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
33416863 ATGAGAAGCA
33416873 AAATCCAATCTAATAAC
1 AAATCCAATCTAATAAC
* * *
33416890 AAATGCAA--TAAAAAA
1 AAATCCAATCTAATAAC
33416905 AAATCCAATCTAATAAC
1 AAATCCAATCTAATAAC
*
33416922 AAATGCAAT
1 AAATCCAAT
33416931 AAAAAAATAC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
15 12 0.38
17 20 0.62
ACGTcount: A:0.59, C:0.17, G:0.03, T:0.21
Consensus pattern (17 bp):
AAATCCAATCTAATAAC
Found at i:33416909 original size:32 final size:32
Alignment explanation
Indices: 33416872--33416937 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
33416862 TATGAGAAGC
33416872 AAAATCCAATCTAATAACAAATGCAATAAAAA
1 AAAATCCAATCTAATAACAAATGCAATAAAAA
33416904 AAAATCCAATCTAATAACAAATGCAATAAAAA
1 AAAATCCAATCTAATAACAAATGCAATAAAAA
33416936 AA
1 AA
33416938 TACTAAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.64, C:0.15, G:0.03, T:0.18
Consensus pattern (32 bp):
AAAATCCAATCTAATAACAAATGCAATAAAAA
Found at i:33419283 original size:24 final size:24
Alignment explanation
Indices: 33419256--33419303 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
33419246 TTATTTCCTT
33419256 GTACAGATTTCTCATCTATGTATA
1 GTACAGATTTCTCATCTATGTATA
33419280 GTACAGATTTCTCATCTATGTATA
1 GTACAGATTTCTCATCTATGTATA
33419304 AATACTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (24 bp):
GTACAGATTTCTCATCTATGTATA
Found at i:33424022 original size:122 final size:127
Alignment explanation
Indices: 33423840--33424089 Score: 316
Period size: 126 Copynumber: 2.0 Consensus size: 127
33423830 AAAAAAGAAA
* * *
33423840 AAGCAACTGAGGGTTGGAAAGAGAGAAATAAACAGCCAACAATTCTCCAAAACTGTT-AAAAG-A
1 AAGCAACTGAGGGTTGGAAAGAGAGAAATAAACAGCAAACAACTCTCCAAAACTCTTAAAAAGAA
* * * ** ** *
33423903 -C-TGTTTTAGACATG-TGTTATGTTTCTTTATGTCTGTGTTTACATACCTGAGAATATCTTT
66 CCGTGTTTCAGACATGCT-TCAGGCATCTCAATGTCTGTGTTTACATACCTGAGAATATATTT
*
33423963 AAGCAATTGA-GGTTGG-AAGAGAGAAATAAACAGCAAACAACTCTTCCAAAACTCTTAAAAAGA
1 AAGCAACTGAGGGTTGGAAAGAGAGAAATAAACAGCAAACAACTC-TCCAAAACTCTTAAAAAGA
*
33424026 ACCGTGTTTCAGACATGCTTCAGGCATCTCAATGTCTGTGTTTACCTACCTGAGAATATATTT
65 ACCGTGTTTCAGACATGCTTCAGGCATCTCAATGTCTGTGTTTACATACCTGAGAATATATTT
33424089 A
1 A
33424090 GATTTTTCTT
Statistics
Matches: 108, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
121 25 0.23
122 17 0.16
123 14 0.13
124 1 0.01
125 1 0.01
126 49 0.45
127 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.30
Consensus pattern (127 bp):
AAGCAACTGAGGGTTGGAAAGAGAGAAATAAACAGCAAACAACTCTCCAAAACTCTTAAAAAGAA
CCGTGTTTCAGACATGCTTCAGGCATCTCAATGTCTGTGTTTACATACCTGAGAATATATTT
Found at i:33426999 original size:14 final size:13
Alignment explanation
Indices: 33426977--33427025 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
33426967 TCAGAGGAAT
33426977 CAATTAATCTATA
1 CAATTAATCTATA
*
33426990 CAAGTTAATCTGTA
1 CAA-TTAATCTATA
*
33427004 CCAATTACTCTATA
1 -CAATTAATCTATA
33427018 CAAATTAA
1 C-AATTAA
33427026 AATAATTCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
13 4 0.14
14 22 0.76
15 3 0.10
ACGTcount: A:0.43, C:0.18, G:0.04, T:0.35
Consensus pattern (13 bp):
CAATTAATCTATA
Found at i:33428411 original size:13 final size:13
Alignment explanation
Indices: 33428395--33428473 Score: 97
Period size: 13 Copynumber: 6.1 Consensus size: 13
33428385 TTTAAACTAA
33428395 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
33428408 ACTTCTCAAAAGT
1 ACTTTTCAAAAGC
* *
33428421 ACTTCTCAAAAAC
1 ACTTTTCAAAAGC
*
33428434 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
33428447 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
33428460 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
33428473 A
1 A
33428474 TTGCCAAACT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
12 5 0.09
13 47 0.84
14 4 0.07
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:33429710 original size:66 final size:66
Alignment explanation
Indices: 33429603--33429744 Score: 196
Period size: 66 Copynumber: 2.2 Consensus size: 66
33429593 AGCCTCTAAA
* * * * * *
33429603 GGTACCCCTTTCTTATATGCATGATAACTTACTAACGATGTTTTTGGATCTAACACGGTCTAGCT
1 GGTACCCCTTTCCTACATGCATGATAACTTACTAACAATGTTTTTGGATCTAACACAGTCCAGCA
33429668 T
66 T
*
33429669 GGTACCCCTTTCCTACATGTATGGA-AACTTACTAACAATGTTTTTGGATCTAACACAGTCCAGC
1 GGTACCCCTTTCCTACATGCAT-GATAACTTACTAACAATGTTTTTGGATCTAACACAGTCCAGC
33429733 AT
65 AT
*
33429735 GGTCCCCCTT
1 GGTACCCCTT
33429745 CGAGCTCTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 65 0.97
67 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.35
Consensus pattern (66 bp):
GGTACCCCTTTCCTACATGCATGATAACTTACTAACAATGTTTTTGGATCTAACACAGTCCAGCA
T
Found at i:33434342 original size:16 final size:16
Alignment explanation
Indices: 33434321--33434351 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33434311 TTCACTATTA
*
33434321 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
33434337 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
33434352 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:33436060 original size:68 final size:72
Alignment explanation
Indices: 33435983--33436114 Score: 200
Period size: 68 Copynumber: 1.9 Consensus size: 72
33435973 TTTTAACACT
* *
33435983 TTAATATTAAATTTAATTTAATACTTATC-T-TA-AT-AGTATTTTATTAATTTAATATTAAAGT
1 TTAATATTAAATTTAATTTAATACTTATCTTGTAGATAAATATTATATTAATTTAATATTAAAGT
33436044 GATTATC
66 GATTATC
**
33436051 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAATATTATATTAATTTAATATTAAAG
1 TTAATATTAAATTTAATTTAATACTTATCTTGTAGATAAATATTATATTAATTTAATATTAAAG
33436115 ATATTAAGTT
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
68 27 0.48
69 1 0.02
70 2 0.04
71 2 0.04
72 24 0.43
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (72 bp):
TTAATATTAAATTTAATTTAATACTTATCTTGTAGATAAATATTATATTAATTTAATATTAAAGT
GATTATC
Found at i:33436258 original size:25 final size:26
Alignment explanation
Indices: 33436219--33436267 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
33436209 TTACAGATAA
33436219 AAAATTCTCTAAAGAGATTATTCTAG
1 AAAATTCTCTAAAGAGATTATTCTAG
* *
33436245 AAAATT-TCTAAAGATATTTTTCT
1 AAAATTCTCTAAAGAGATTATTCT
33436268 GATTTACAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (26 bp):
AAAATTCTCTAAAGAGATTATTCTAG
Found at i:33437062 original size:15 final size:15
Alignment explanation
Indices: 33437042--33437113 Score: 51
Period size: 15 Copynumber: 4.6 Consensus size: 15
33437032 AATTGTTTAC
33437042 AATGTTATATTATGT
1 AATGTTATATTATGT
33437057 AATGTTATA-TA--T
1 AATGTTATATTATGT
* *
33437069 ACATGTTTTATAATTGTTT
1 A-ATG--TTAT-ATTATGT
33437088 ACAATGTTATATTATGT
1 --AATGTTATATTATGT
33437105 AATGTTATA
1 AATGTTATA
33437114 ATTGTGATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 18
0.68 0.05 0.27
Matches are distributed among these distances:
12 2 0.04
13 3 0.07
14 2 0.04
15 22 0.49
16 1 0.02
17 6 0.13
18 4 0.09
19 1 0.02
20 3 0.07
21 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.11, T:0.51
Consensus pattern (15 bp):
AATGTTATATTATGT
Found at i:33437084 original size:48 final size:48
Alignment explanation
Indices: 33437013--33437113 Score: 193
Period size: 48 Copynumber: 2.1 Consensus size: 48
33437003 ACCTATCCCC
33437013 TTATATATACATGTTTCATAATTGTTTACAATGTTATATTATGTAATG
1 TTATATATACATGTTTCATAATTGTTTACAATGTTATATTATGTAATG
*
33437061 TTATATATACATGTTTTATAATTGTTTACAATGTTATATTATGTAATG
1 TTATATATACATGTTTCATAATTGTTTACAATGTTATATTATGTAATG
33437109 TTATA
1 TTATA
33437114 ATTGTGATAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.51
Consensus pattern (48 bp):
TTATATATACATGTTTCATAATTGTTTACAATGTTATATTATGTAATG
Found at i:33455117 original size:30 final size:31
Alignment explanation
Indices: 33455083--33455142 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
33455073 AGCTCCAACC
33455083 AGCTCACTTGAGCTTGCTT-CAGCTCGTTTG
1 AGCTCACTTGAGCTTGCTTCCAGCTCGTTTG
** * *
33455113 AGCTCGTTTTAGCTTTCTTCCAGCTCGTTT
1 AGCTCACTTGAGCTTGCTTCCAGCTCGTTT
33455143 CTTATTCTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.12, C:0.27, G:0.20, T:0.42
Consensus pattern (31 bp):
AGCTCACTTGAGCTTGCTTCCAGCTCGTTTG
Found at i:33457591 original size:20 final size:19
Alignment explanation
Indices: 33457547--33457616 Score: 85
Period size: 20 Copynumber: 3.8 Consensus size: 19
33457537 AGAAAACAAA
*
33457547 AAAAAAAGAAAAAGAATGC
1 AAAAATAGAAAAAGAATGC
33457566 AAAAATGAGAAAAAGAATGC
1 AAAAAT-AGAAAAAGAATGC
*
33457586 AAAAATAGTAAAAGAA---
1 AAAAATAGAAAAAGAATGC
33457602 AAAAA-AGAAAAAGAA
1 AAAAATAGAAAAAGAA
33457617 AGAAAATAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
15 9 0.19
16 5 0.11
19 14 0.30
20 19 0.40
ACGTcount: A:0.74, C:0.03, G:0.16, T:0.07
Consensus pattern (19 bp):
AAAAATAGAAAAAGAATGC
Found at i:33457642 original size:15 final size:15
Alignment explanation
Indices: 33457595--33457644 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
33457585 CAAAAATAGT
*
33457595 AAAAGAAAAAAAAGA
1 AAAAGAAAGAAAAGA
*
33457610 AAAAGAAAGAAAATA
1 AAAAGAAAGAAAAGA
*
33457625 AAAAG-AAGAGCAAGA
1 AAAAGAAAGA-AAAGA
33457640 AAAAG
1 AAAAG
33457645 TGAGGAGTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 4 0.13
15 26 0.87
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (15 bp):
AAAAGAAAGAAAAGA
Found at i:33459613 original size:20 final size:20
Alignment explanation
Indices: 33459590--33459634 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
33459580 CAGCTCCAAC
*
33459590 CAGCTCACTTGAGCTTGTTT
1 CAGCTCACTTGAGCTCGTTT
**
33459610 CAGCTCGTTTGAGCTCGTTT
1 CAGCTCACTTGAGCTCGTTT
*
33459630 TAGCT
1 CAGCT
33459635 TTCTTCCAGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.40
Consensus pattern (20 bp):
CAGCTCACTTGAGCTCGTTT
Found at i:33468054 original size:75 final size:75
Alignment explanation
Indices: 33467965--33468117 Score: 306
Period size: 75 Copynumber: 2.0 Consensus size: 75
33467955 GTTTACTTTG
33467965 CTTTCTTTTAAGTCTTTTCATAATCTTGTGATCATGTTACTATGGTAATACTCTGCAAGAAGATA
1 CTTTCTTTTAAGTCTTTTCATAATCTTGTGATCATGTTACTATGGTAATACTCTGCAAGAAGATA
33468030 ATGCTAACAT
66 ATGCTAACAT
33468040 CTTTCTTTTAAGTCTTTTCATAATCTTGTGATCATGTTACTATGGTAATACTCTGCAAGAAGATA
1 CTTTCTTTTAAGTCTTTTCATAATCTTGTGATCATGTTACTATGGTAATACTCTGCAAGAAGATA
33468105 ATGCTAACAT
66 ATGCTAACAT
33468115 CTT
1 CTT
33468118 CTGCCATTTT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 78 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (75 bp):
CTTTCTTTTAAGTCTTTTCATAATCTTGTGATCATGTTACTATGGTAATACTCTGCAAGAAGATA
ATGCTAACAT
Found at i:33471486 original size:54 final size:54
Alignment explanation
Indices: 33471410--33471517 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
33471400 ATAACTTTCT
33471410 TTTAGTCAATTGATTGACACTCTAAATAAGAGTCACCTTTAAGTCATTTAACTC
1 TTTAGTCAATTGATTGACACTCTAAATAAGAGTCACCTTTAAGTCATTTAACTC
33471464 TTTAGTCAATTGATTGACACTCTAAATAAGAGTCACCTTTAAGTCATTTAACTC
1 TTTAGTCAATTGATTGACACTCTAAATAAGAGTCACCTTTAAGTCATTTAACTC
33471518 AAGTTTAAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (54 bp):
TTTAGTCAATTGATTGACACTCTAAATAAGAGTCACCTTTAAGTCATTTAACTC
Found at i:33471727 original size:2 final size:2
Alignment explanation
Indices: 33471720--33471755 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
33471710 TTAGACCAAA
*
33471720 CT CT CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
33471756 TTGTCCTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:33475050 original size:42 final size:41
Alignment explanation
Indices: 33474963--33475054 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 41
33474953 TCCTAAATAG
* **
33474963 GGTCTTACACGAATCAAATACGATGCCGATGTCCTAGACAT
1 GGTCTTACACGAATCAAATACGATGCCAACATCCTAGACAT
* **
33475004 GGTCTTACACGTAATCACATATCGATGCCAACATCC-AGATGT
1 GGTCTTACACG-AATCAAATA-CGATGCCAACATCCTAGACAT
33475046 GGTCTTACA
1 GGTCTTACA
33475055 TGAGAACACA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
41 11 0.26
42 21 0.49
43 11 0.26
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (41 bp):
GGTCTTACACGAATCAAATACGATGCCAACATCCTAGACAT
Found at i:33476566 original size:60 final size:60
Alignment explanation
Indices: 33476444--33476569 Score: 139
Period size: 60 Copynumber: 2.1 Consensus size: 60
33476434 AAGGAGGAAG
* * ** * * *
33476444 TACTGGTAGTTTATCTACATTACTGGTGGCTTGACCACATTACTAGCAGCTTGTTTGTAT
1 TACTGGCAGTTTATCTACAATACTGGCAGCTTGACCACACTACTAGCAGCTTATTTGCAT
* *
33476504 TACTGGCAGTTTATCTACAATATTGGCAGCTTG-CCTACACTACT-GCCAGTTTATTTGCAT
1 TACTGGCAGTTTATCTACAATACTGGCAGCTTGACC-ACACTACTAG-CAGCTTATTTGCAT
33476564 TACTGG
1 TACTGG
33476570 TGGCTTAACC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
59 3 0.05
60 52 0.95
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (60 bp):
TACTGGCAGTTTATCTACAATACTGGCAGCTTGACCACACTACTAGCAGCTTATTTGCAT
Found at i:33478625 original size:28 final size:27
Alignment explanation
Indices: 33478544--33478634 Score: 101
Period size: 28 Copynumber: 3.3 Consensus size: 27
33478534 AACATGACGG
** *
33478544 TAAATGTGATTCAGCCTAATGGCCGTA
1 TAAATGTGATTGGGCCTAATGGCCATA
*
33478571 TAAATGTGATTTGGGCCTAATGTGCCACA
1 TAAATGTGA-TTGGGCCTAATG-GCCATA
*
33478600 TAAATGTGATTGGGCCTAGTTGGCCATA
1 TAAATGTGATTGGGCCTA-ATGGCCATA
*
33478628 TACATGT
1 TAAATGT
33478635 ATGTGGTTTT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
27 9 0.17
28 30 0.56
29 15 0.28
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (27 bp):
TAAATGTGATTGGGCCTAATGGCCATA
Found at i:33482663 original size:29 final size:28
Alignment explanation
Indices: 33482562--33482652 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
33482552 AGGAAGCGTC
33482562 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* *
33482590 TTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
* *
33482618 CTGGTGGCAGTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
33482647 CTGGTG
1 CTGGTG
33482653 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
28 48 0.87
29 7 0.13
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:33482677 original size:56 final size:55
Alignment explanation
Indices: 33482562--33482677 Score: 128
Period size: 56 Copynumber: 2.1 Consensus size: 55
33482552 AGGAAGCGTC
* * *
33482562 CTGGTGGCTATGCCACAAATTATCTGTTTTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
33482618 CTGGTGGC-AGTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
33482674 CTGG
1 CTGG
33482678 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
55 9 0.18
56 29 0.57
57 13 0.25
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.35
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:33489721 original size:47 final size:47
Alignment explanation
Indices: 33489614--33490046 Score: 627
Period size: 47 Copynumber: 9.1 Consensus size: 47
33489604 GAAATGATAG
*
33489614 TAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
33489663 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33489710 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33489757 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
33489806 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33489853 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * *
33489901 CAGGGCCGAGTGGCCAACGTGATGAATGTG-AAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
33489947 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
33489996 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
33490043 TAAG
1 TAAG
33490047 TCCCGAAGGG
Statistics
Matches: 351, Mismatches: 26, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
46 40 0.11
47 151 0.43
48 40 0.11
49 120 0.34
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:33489799 original size:96 final size:96
Alignment explanation
Indices: 33489617--33490046 Score: 679
Period size: 96 Copynumber: 4.5 Consensus size: 96
33489607 ATGATAGTAA
*
33489617 GGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
*
33489682 TGATGAATGTGAAAGTG--TATATATGTGATAA
64 TGATGAATGTGAAAGTGTATATATATGTGATAG
33489713 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
33489778 ATGAATGTGAAAGTGTATATATATGTGATAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
33489809 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
33489874 ATGAATGTG-AAGTGTATATATATGTGACAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
* * * *
33489904 GGCCGAGTGGCCAACGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
33489968 ATGAATGTGGAAGTGTATATATATGTGACAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
* * * * * *
33489999 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
33490047 TCCCGAAGGG
Statistics
Matches: 321, Mismatches: 9, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 93 0.29
95 90 0.28
96 138 0.43
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATATGTGATAG
Found at i:33489872 original size:143 final size:143
Alignment explanation
Indices: 33489614--33490046 Score: 649
Period size: 143 Copynumber: 3.0 Consensus size: 143
33489604 GAAATGATAG
*
33489614 TAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
33489679 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
33489744 TGTATATATGTGA
131 TGTATATATGTGA
*
33489757 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
33489822 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
33489886 TGTATATATATGTGA
131 TG--TATATATGTGA
* * * * * *
33489901 CAGGGCCGAGTGGCCAACGTGATGAATGTG-AAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * * * * *
33489963 ATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33490028 AGTGTATAAATGTGA
129 AGTGTATATATGTGA
33490043 TAAG
1 TAAG
33490047 TCCCGAAGGG
Statistics
Matches: 265, Mismatches: 20, Indels: 11
0.90 0.07 0.04
Matches are distributed among these distances:
141 45 0.17
142 17 0.06
143 163 0.62
144 40 0.15
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGA
Found at i:33489942 original size:190 final size:190
Alignment explanation
Indices: 33489617--33490046 Score: 675
Period size: 190 Copynumber: 2.3 Consensus size: 190
33489607 ATGATAGTAA
*
33489617 GGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
* * * *
33489682 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
64 TGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGT
*
33489747 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
129 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAG
33489809 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
33489874 ATGAATGTG-AAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGAATGTG-AAGTGT
66 ATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGT
*
33489937 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
129 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAG
* * * * * *
33489999 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
33490047 TCCCGAAGGG
Statistics
Matches: 221, Mismatches: 15, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
189 5 0.02
190 149 0.67
191 35 0.16
192 32 0.14
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (190 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAG
Found at i:33495136 original size:40 final size:40
Alignment explanation
Indices: 33495042--33495186 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
33495032 TACTCGAATG
*
33495042 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
33495083 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
33495123 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
33495163 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
33495187 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:33496411 original size:40 final size:39
Alignment explanation
Indices: 33496327--33496511 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
33496317 TCGAATGATG
* * * *
33496327 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
33496367 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33496407 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
33496446 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
33496487 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
33496512 AATGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33496463 original size:79 final size:81
Alignment explanation
Indices: 33496327--33496509 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
33496317 TCGAATGATG
* *
33496327 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33496391 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
33496406 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
33496468 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
33496486 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33496510 TGAATGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:33496533 original size:79 final size:79
Alignment explanation
Indices: 33496380--33496544 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
33496370 GGACTAAGAT
* **
33496380 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
33496445 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
33496459 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
33496522 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
33496538 CCGAAGG
1 CCGAAGG
33496545 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.66
80 23 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:33500687 original size:28 final size:28
Alignment explanation
Indices: 33500647--33500714 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
33500637 TAGATATACT
*
33500647 ATTATACCCCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATGACC
33500675 ATTATACCCCTATGTATGCAAAATGACC
1 ATTATACCCCTATGTATGCAAAATGACC
*
33500703 TTTATACCCCTA
1 ATTATACCCCTA
33500715 GGGTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.32
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATGACC
Found at i:33500921 original size:29 final size:28
Alignment explanation
Indices: 33500820--33500910 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
33500810 AGGAAGCGTC
33500820 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* *
33500848 TTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
* *
33500876 CTGGTGGCACTACCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
33500905 CTGGTG
1 CTGGTG
33500911 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
28 48 0.87
29 7 0.13
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:33503576 original size:3 final size:3
Alignment explanation
Indices: 33503564--33503594 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
33503554 TTTTATTACC
33503564 ATT ATCT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
33503595 TCAGTTAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:33509609 original size:50 final size:50
Alignment explanation
Indices: 33509515--33509611 Score: 140
Period size: 50 Copynumber: 1.9 Consensus size: 50
33509505 CCGTGTCATC
* * * **
33509515 GGCCGTGTGCTAGACCGTGTAAAACCTGCACTAAAATTTCCAAGACATAT
1 GGCCATGTGATAGACCGTGTAAAACCTGCACTAAAAATGACAAGACATAT
*
33509565 GGCCATGTGATAGACCGTGTGAAACCTGCACTAAAAATGACAAGACA
1 GGCCATGTGATAGACCGTGTAAAACCTGCACTAAAAATGACAAGACA
33509612 CACGGCTGTG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.21
Consensus pattern (50 bp):
GGCCATGTGATAGACCGTGTAAAACCTGCACTAAAAATGACAAGACATAT
Found at i:33513818 original size:47 final size:47
Alignment explanation
Indices: 33513704--33513975 Score: 229
Period size: 46 Copynumber: 5.8 Consensus size: 47
33513694 TAACTTATGT
* * *
33513704 GAGCCAGTGTAAGAAC-TGTCTGGGACATGCATCGGCCACTT--TATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGG-CA-TTGAGACGA
* *
33513750 GAGCCAGTATAAGACCGTGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAGACGA
* * * *
33513798 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCTCGAGACGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAGACG-A
* * *
33513845 -AGCCAGTGTAAGA-CATGTCTGGGACATGCATTGGC-TACGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCAT-TGAGACGA
* * * * *
33513890 TAGTCAGTGTAAGACCGTGTCTGGGACATGGCATCGAC-TTGAGA-TA
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAGACGA
* **
33513936 TGAGCCAGTGTAAGACCGTGTCAAGGACATGGCATCGGCA
1 -GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCA
33513976 CCTTACCCAC
Statistics
Matches: 190, Mismatches: 25, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
45 2 0.01
46 81 0.43
47 78 0.41
48 29 0.15
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAGACGA
Found at i:33513942 original size:93 final size:93
Alignment explanation
Indices: 33513750--33513975 Score: 235
Period size: 93 Copynumber: 2.4 Consensus size: 93
33513740 CACTTTATGA
* * *
33513750 GAGCCAGTATAAGACCGTGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACAT
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATCGAGACGAGAGCTAGTGTAAGACAT
* *
33513815 GTCTGGGACATGCATCAGCCTCGAGACGT
65 GTCTGGGACATGCATCAGACTCGAGACAT
* * * *
33513844 AAGCCAGTGTAAGACATGTCTGGGACAT-GCATTGGC-TACGAGATGATAG-TCAGTGTAAGACC
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCAT-CGAGACGAGAGCT-AGTGTAAGA-C
* * *
33513906 GTGTCTGGGACATGGCATC-GACTTGAGATAT
63 ATGTCTGGGACAT-GCATCAGACTCGAGACAT
* **
33513937 GAGCCAGTGTAAGACCGTGTCAAGGACATGGCATCGGCA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
33513976 CCTTACCCAC
Statistics
Matches: 108, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
91 2 0.02
92 24 0.22
93 47 0.44
94 28 0.26
95 7 0.06
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.21
Consensus pattern (93 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGACGAGAGCTAGTGTAAGACATG
TCTGGGACATGCATCAGACTCGAGACAT
Found at i:33513964 original size:140 final size:141
Alignment explanation
Indices: 33513705--33513971 Score: 353
Period size: 140 Copynumber: 1.9 Consensus size: 141
33513695 AACTTATGTG
***
33513705 AGCCAGTGTAAGAACTGTCTGGGACATGCATCGGCCACTTTATGAGAGCCAGTATAAGACCGTGT
1 AGCCAGTGTAAGAACTGTCTGGGACATGCATCGGCCACGAGATGAGAGCCAGTATAAGACCGTGT
* * **
33513770 CTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGC
66 CTGGGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCAAGGACATGGCATCAGC
33513834 CTCGAGACGTA
131 CTCGAGACGTA
* * * * *
33513845 AGCCAGTGTAAG-ACATGTCTGGGACATGCATTGGCTACGAGATGATAGTCAGTGTAAGACCGTG
1 AGCCAGTGTAAGAAC-TGTCTGGGACATGCATCGGCCACGAGATGAGAGCCAGTATAAGACCGTG
* *
33513909 TCTGGGACATGGCATCGAC-TTGAGA-TATGAGCCAGTGTAAGACCGTGTCAAGGACATGGCATC
65 TCTGGGACATGGCATCGACATTGAGACGA-GAGCCAGTGTAAGA-CATGTCAAGGACATGGCATC
33513972 GGCACCTTAC
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
138 1 0.01
139 21 0.19
140 82 0.75
141 5 0.05
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (141 bp):
AGCCAGTGTAAGAACTGTCTGGGACATGCATCGGCCACGAGATGAGAGCCAGTATAAGACCGTGT
CTGGGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCAAGGACATGGCATCAGC
CTCGAGACGTA
Found at i:33517568 original size:40 final size:40
Alignment explanation
Indices: 33517488--33517668 Score: 210
Period size: 40 Copynumber: 4.5 Consensus size: 40
33517478 AATGATGTCC
* *
33517488 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCG
*
33517528 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
* * *
33517568 GGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
* *
33517607 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCG
*
33517647 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
33517669 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
Found at i:33517620 original size:79 final size:81
Alignment explanation
Indices: 33517488--33517666 Score: 233
Period size: 79 Copynumber: 2.2 Consensus size: 81
33517478 AATGATGTCC
* * *
33517488 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTTGTG
*
33517552 CGAGTTACTA-ATTCCG
66 CGAGTTACTATA-ACCG
* **
33517568 GGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCATTTGT
33517630 GCGAGTTACTATAACCG
65 GCGAGTTACTATAACCG
*
33517647 GGCTATGTCCCGAAGGCATT
1 GGCTAAGTCCCGAAGGCATT
33517667 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 60 0.69
80 26 0.30
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTTGTG
CGAGTTACTATAACCG
Found at i:33525725 original size:40 final size:40
Alignment explanation
Indices: 33525641--33525825 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
33525631 TCGAATGATG
* *
33525641 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
33525680 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
33525721 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
33525760 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
33525799 AACCGGGCTATGTCCTGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
33525826 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:33525777 original size:79 final size:81
Alignment explanation
Indices: 33525641--33525823 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
33525631 TCGAATGATG
* * *
33525641 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATT
33525705 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* **
33525720 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCA
33525782 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
33525800 ACCGGGCTATGTCCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33525824 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.67
80 29 0.32
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:33525847 original size:79 final size:79
Alignment explanation
Indices: 33525694--33525858 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
33525684 GGACTAAGAT
* **
33525694 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTCACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
*
33525759 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
33525773 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCTGAAGGCATTTGAACGAGT-AGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTCA-C
* * *
33525836 TATATTC-GGTTAAATT
63 TAAATCCGGGTTAAATC
33525852 CCGAAGG
1 CCGAAGG
33525859 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
ATCCGGGTTAAATC
Found at i:33529964 original size:28 final size:28
Alignment explanation
Indices: 33529924--33529979 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
33529914 AACCTTTTCG
*
33529924 ATGTCGGCCTCTACATAGTCCACCCAGT
1 ATGTCGGCCTCTACATAATCCACCCAGT
* *
33529952 ATGTCGGCTTCTACGTAATCCACCCAGT
1 ATGTCGGCCTCTACATAATCCACCCAGT
33529980 TGACAAATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.21, C:0.34, G:0.18, T:0.27
Consensus pattern (28 bp):
ATGTCGGCCTCTACATAATCCACCCAGT
Found at i:33533982 original size:46 final size:48
Alignment explanation
Indices: 33533874--33533993 Score: 145
Period size: 48 Copynumber: 2.5 Consensus size: 48
33533864 TGTCTTCGAC
** * *
33533874 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
** * *
33533922 ATGGGTTTACATGGCTCATTCCTGTCTCCAAAGCCGTATA-AT-TGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
33533968 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
33533994 CTGTCCTGGC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 26 0.43
47 2 0.03
48 33 0.54
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:33538263 original size:46 final size:48
Alignment explanation
Indices: 33538159--33538272 Score: 133
Period size: 48 Copynumber: 2.4 Consensus size: 48
33538149 TGTCTTCGAC
** * * *
33538159 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTACCTCCAAAGCCATATATATATAAT
* * * *
33538207 ATGGGCTTACATGGCTCATTCCTGCCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTACCTCCAAAGCCATATATATATAAT
33538253 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
33538273 TCTATCCTGT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 22 0.39
47 1 0.02
48 33 0.59
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTACCTCCAAAGCCATATATATATAAT
Found at i:33546647 original size:47 final size:46
Alignment explanation
Indices: 33546579--33546790 Score: 164
Period size: 46 Copynumber: 4.5 Consensus size: 46
33546569 ACCACTTTAT
* * *
33546579 GAGAGCCAGTATAAGACCATGTCTGGGACATGGCGTCAGTATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGTATTGAGAC
* * ** *
33546627 GAGAGCTAGTGTAAGACATGTATGGGACATGCATCGGCCTCGAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGTATTGAGAC
* * *
33546673 GTA-AGCCAGTGTAAGACATGTCTAGGAAATGCATCGGCTA-TGAGAT
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-TATTGAGAC
* ** *
33546719 GATAGTTAGTGTAAGACCGTGTCTGGGACATGGCATC-G-ACTTGAGA-
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGTA-TTGAGAC
*
33546765 TATGAGCCAGTGTAAGACTATGTCTG
1 GA-GAGCCAGTGTAAGAC-ATGTCTG
33546791 TAACATGCCA
Statistics
Matches: 129, Mismatches: 26, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
45 2 0.02
46 60 0.47
47 48 0.37
48 19 0.15
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGTATTGAGAC
Found at i:33550969 original size:41 final size:41
Alignment explanation
Indices: 33550837--33550955 Score: 193
Period size: 41 Copynumber: 2.9 Consensus size: 41
33550827 TTGACACACT
* * **
33550837 CCCGCGTCTATGGCCCGTGTCCTTCACTTGGCCATGACATG
1 CCCGTGTCTATGGCCCATGTCCTTCACACGGCCATGACATG
33550878 CCCGTGTCTATGGCCCATGTCCTTCACACGGCCATGACATG
1 CCCGTGTCTATGGCCCATGTCCTTCACACGGCCATGACATG
*
33550919 CCCGTGTCTATGGCCCATGTCCTTCACACAGCCATGA
1 CCCGTGTCTATGGCCCATGTCCTTCACACGGCCATGA
33550956 TACTCCTGTG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.16, C:0.37, G:0.22, T:0.25
Consensus pattern (41 bp):
CCCGTGTCTATGGCCCATGTCCTTCACACGGCCATGACATG
Found at i:33552604 original size:30 final size:30
Alignment explanation
Indices: 33552564--33552625 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
33552554 TAAGATTCAT
* * *
33552564 ACTTTGATAAAATGACCGTTTTCCCCCTAG
1 ACTTTCATAAAATGACCATTTTACCCCTAG
* *
33552594 ACTTTCATAAAATGTCCATTTTACCCTTAG
1 ACTTTCATAAAATGACCATTTTACCCCTAG
33552624 AC
1 AC
33552626 CCAAAAATTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (30 bp):
ACTTTCATAAAATGACCATTTTACCCCTAG
Found at i:33555368 original size:40 final size:40
Alignment explanation
Indices: 33555261--33555407 Score: 172
Period size: 40 Copynumber: 3.7 Consensus size: 40
33555251 ATTTGATGTG
* **
33555261 TGTATCCGGGCTTAAAGACCCGCAAACTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
*
33555301 TGTATCCGGGTTTAAAGACCCGTAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* * * *
33555341 TGTATCCGGGTTTAAAGGCCCGCAGGCT-TCGTACTGAAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
* * *
33555381 GGAATCCGGG-TTAAAGACCCGTAGGCT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT
33555408 CGTGTTAGAA
Statistics
Matches: 93, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 16 0.17
40 77 0.83
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
Found at i:33555419 original size:39 final size:39
Alignment explanation
Indices: 33555304--33555420 Score: 119
Period size: 40 Copynumber: 2.9 Consensus size: 39
33555294 CTGGAATTGT
** * * *
33555304 ATCCGGGTTTAAAGACCCGTAGGCTATATGCTGGAATTGT
1 ATCCGGGTTTAAAGACCCGTAGGCT-CGTGCTGAAATGGA
* * *
33555344 ATCCGGGTTTAAAGGCCCGCAGGCTTCGTACTGAAATGGA
1 ATCCGGGTTTAAAGACCCGTAGGC-TCGTGCTGAAATGGA
*
33555384 ATCCGGG-TTAAAGACCCGTAGGCTCGTGTTAGAAATG
1 ATCCGGGTTTAAAGACCCGTAGGCTCGTGCT-GAAATG
33555421 TGTTTCGAGT
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
38 5 0.08
39 20 0.32
40 37 0.59
41 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (39 bp):
ATCCGGGTTTAAAGACCCGTAGGCTCGTGCTGAAATGGA
Found at i:33563027 original size:40 final size:40
Alignment explanation
Indices: 33562983--33563169 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
33562973 ATTTGATGTG
* *
33562983 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGTTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* * *
33563023 TGTATCTGAGTTTAAAAACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
*
33563063 TGTATCTGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* *
33563103 TGTATCCAGGTTTAAAGACCCGCAGGCT-TCGTGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
* * ** *
33563143 GGAATCTAGG-TTAAAGACCCGTAGGCT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT
33563170 CGTGTTAGAA
Statistics
Matches: 132, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 17 0.13
40 115 0.87
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (40 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
Found at i:33566741 original size:27 final size:27
Alignment explanation
Indices: 33566711--33566778 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
33566701 AATGCTCTTG
*
33566711 TAGGGTAAAATGACCGTAATACCCCTA
1 TAGGGTAAAATGACCATAATACCCCTA
* * *
33566738 TAGGGTAAAATGATCATAATACCCTTC
1 TAGGGTAAAATGACCATAATACCCCTA
*
33566765 TATGGTAAAATGAC
1 TAGGGTAAAATGAC
33566779 GATTATGCCC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
TAGGGTAAAATGACCATAATACCCCTA
Found at i:33567195 original size:33 final size:33
Alignment explanation
Indices: 33567095--33567195 Score: 115
Period size: 33 Copynumber: 3.2 Consensus size: 33
33567085 TAATTGCATT
* *
33567095 ACACTATACTGATACTGTATTGGGCTTAAGCCC
1 ACACTGTACTGATACTGTATTGGGCTTAGGCCC
*
33567128 ACACTGT--T-AT-C-GTATAT-GGCTAAGGCCC
1 ACACTGTACTGATACTGTAT-TGGGCTTAGGCCC
*
33567156 AGACTGTACTGATACTGTATTGGGCTTAGGCCC
1 ACACTGTACTGATACTGTATTGGGCTTAGGCCC
33567189 ACACTGT
1 ACACTGT
33567196 TATTGTATAG
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
28 19 0.35
29 2 0.04
30 3 0.05
31 3 0.05
32 2 0.04
33 26 0.47
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.30
Consensus pattern (33 bp):
ACACTGTACTGATACTGTATTGGGCTTAGGCCC
Found at i:33567196 original size:61 final size:62
Alignment explanation
Indices: 33567101--33567260 Score: 223
Period size: 61 Copynumber: 2.6 Consensus size: 62
33567091 CATTACACTA
* *
33567101 TACTGATACTGTATTGGGCTTAAGCCCACACTGTTATCGTATATGGCTAAGGCCC-AGACTG
1 TACTGATACTGTATTGGGCTTAGGCCCACACTGTTATCGTATAGGGCTAAGGCCCTAGACTG
*
33567162 TACTGATACTGTATTGGGCTTAGGCCCACACTGTTATTGTATAGGGCTAAGGCCCTAGACTG
1 TACTGATACTGTATTGGGCTTAGGCCCACACTGTTATCGTATAGGGCTAAGGCCCTAGACTG
* * ** * * *
33567224 TACCGATCCTAAATAGGGCTCAGGCCCAGACTGTTAT
1 TACTGATACTGTATTGGGCTTAGGCCCACACTGTTAT
33567261 TGCATGCACT
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
61 52 0.59
62 36 0.41
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (62 bp):
TACTGATACTGTATTGGGCTTAGGCCCACACTGTTATCGTATAGGGCTAAGGCCCTAGACTG
Found at i:33567214 original size:28 final size:28
Alignment explanation
Indices: 33567110--33567216 Score: 99
Period size: 28 Copynumber: 3.6 Consensus size: 28
33567100 ATACTGATAC
*
33567110 TGTATTGGGCTTAA-GCCCACACTGTTAT
1 TGTATAGGGC-TAAGGCCCACACTGTTAT
* * *
33567138 CGTATATGGCTAAGGCCCAGACTGTACTGAT
1 TGTATAGGGCTAAGGCCCACACTGT--T-AT
* *
33567169 ACTGTATTGGGCTTAGGCCCACACTGTTAT
1 --TGTATAGGGCTAAGGCCCACACTGTTAT
33567199 TGTATAGGGCTAAGGCCC
1 TGTATAGGGCTAAGGCCC
33567217 TAGACTGTAC
Statistics
Matches: 62, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
27 3 0.05
28 33 0.53
30 3 0.05
31 3 0.05
33 20 0.32
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (28 bp):
TGTATAGGGCTAAGGCCCACACTGTTAT
Found at i:33567257 original size:62 final size:61
Alignment explanation
Indices: 33567124--33567262 Score: 188
Period size: 62 Copynumber: 2.3 Consensus size: 61
33567114 TTGGGCTTAA
* * * ** * *
33567124 GCCCACACTGTTATCGTATATGGCTAAGGCCCAGACTGTACTGATACTGTATTGGGCTTAG
1 GCCCACACTGTTATTGTATAGGGCTAAGGCCCAGACTGTACCGATACTAAATAGGGCTCAG
*
33567185 GCCCACACTGTTATTGTATAGGGCTAAGGCCCTAGACTGTACCGATCCTAAATAGGGCTCAG
1 GCCCACACTGTTATTGTATAGGGCTAAGGCCC-AGACTGTACCGATACTAAATAGGGCTCAG
*
33567247 GCCCAGACTGTTATTG
1 GCCCACACTGTTATTG
33567263 CATGCACTGT
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
61 30 0.44
62 38 0.56
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (61 bp):
GCCCACACTGTTATTGTATAGGGCTAAGGCCCAGACTGTACCGATACTAAATAGGGCTCAG
Found at i:33570663 original size:40 final size:40
Alignment explanation
Indices: 33570585--33570808 Score: 301
Period size: 40 Copynumber: 5.5 Consensus size: 40
33570575 ACCCAAGTAT
* *
33570585 CTTCGGGATTTA-CCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
33570624 CTTCGGGTCTTAGCCCGAATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
33570664 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
33570704 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
33570747 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
33570787 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
33570809 CATCCGAATA
Statistics
Matches: 164, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 11 0.07
40 116 0.71
41 1 0.01
43 36 0.22
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:33570781 original size:83 final size:80
Alignment explanation
Indices: 33570585--33570808 Score: 308
Period size: 83 Copynumber: 2.8 Consensus size: 80
33570575 ACCCAAGTAT
* * * * *
33570585 CTTCGGGATTTA-CCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGAATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
33570649 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
33570664 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
33570728 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
33570747 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
33570809 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 12 0.09
80 49 0.38
83 67 0.52
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:33578348 original size:40 final size:40
Alignment explanation
Indices: 33578270--33578492 Score: 301
Period size: 40 Copynumber: 5.5 Consensus size: 40
33578260 ACCCAAGTAT
* *
33578270 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
33578309 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
33578349 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
33578389 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
33578432 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
33578472 CTTCGGGACTTAGCCC-GATAT
1 CTTCGGGACTTAGCCCGGATAT
33578493 CATCGAATAA
Statistics
Matches: 165, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 17 0.10
40 111 0.67
41 1 0.01
43 36 0.22
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:33578466 original size:83 final size:80
Alignment explanation
Indices: 33578270--33578492 Score: 308
Period size: 83 Copynumber: 2.8 Consensus size: 80
33578260 ACCCAAGTAT
* * * *
33578270 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
33578334 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
33578349 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
33578413 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
33578432 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCC-GATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
33578493 CATCGAATAA
Statistics
Matches: 128, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
82 4 0.03
83 62 0.48
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:33583302 original size:27 final size:27
Alignment explanation
Indices: 33583272--33583389 Score: 191
Period size: 27 Copynumber: 4.4 Consensus size: 27
33583262 CCCCAAAATA
*
33583272 GGTAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
33583299 GGTAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
33583326 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
33583353 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
33583380 GGTAAAATGA
1 GGTAAAATGA
33583390 AGATTATGCC
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:33584741 original size:29 final size:29
Alignment explanation
Indices: 33584667--33584785 Score: 102
Period size: 29 Copynumber: 4.2 Consensus size: 29
33584657 TACATACACG
* * *
33584667 CATATGGCCCACTAAGCCCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* *
33584695 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCAT-TAGGCCCAATTCATATT
* *
33584724 CTTATGGCCCATTAGGCCTAATTCA-ATTT
1 CATATGGCCCATTAGGCCCAATTCATA-TT
* * *
33584753 CATATGGCTCATTAGACCCAAATCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
33584782 -ATAT
1 CATAT
33584786 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 14, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
28 21 0.29
29 50 0.69
30 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:33586514 original size:28 final size:28
Alignment explanation
Indices: 33586482--33586590 Score: 85
Period size: 28 Copynumber: 3.7 Consensus size: 28
33586472 CATTACACTG
*
33586482 TACTGATACTGTATTGGGCTTAGGCCCA
1 TACTGATACTGTATAGGGCTTAGGCCCA
* * *
33586510 TACTGTTATTGTATAGGGCTAAGGCCCAAA
1 TACTGATACTGTATAGGGCTTAGGCCC--A
* * *
33586540 CTGTACTGATACTGTATTGGGTTTAGGCCTA
1 ---TACTGATACTGTATAGGGCTTAGGCCCA
*
33586571 CACT-ATTACTGTATAGGGCT
1 TACTGA-TACTGTATAGGGCT
33586591 AAGGTCCAGA
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
27 1 0.02
28 38 0.61
30 1 0.02
31 1 0.02
33 21 0.34
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (28 bp):
TACTGATACTGTATAGGGCTTAGGCCCA
Found at i:33586568 original size:33 final size:33
Alignment explanation
Indices: 33586478--33586568 Score: 111
Period size: 28 Copynumber: 2.9 Consensus size: 33
33586468 ATTGCATTAC
*
33586478 ACTGTACTGATACTGTATTGGGCTTAGGCCCAT
1 ACTGTACTGATACTGTATTGGGCTTAGGCCCAA
* *
33586511 ACTGT--T-AT--TGTATAGGGCTAAGGCCCAA
1 ACTGTACTGATACTGTATTGGGCTTAGGCCCAA
*
33586539 ACTGTACTGATACTGTATTGGGTTTAGGCC
1 ACTGTACTGATACTGTATTGGGCTTAGGCC
33586569 TACACTATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
28 22 0.47
30 3 0.06
31 3 0.06
33 19 0.40
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (33 bp):
ACTGTACTGATACTGTATTGGGCTTAGGCCCAA
Found at i:33586584 original size:61 final size:61
Alignment explanation
Indices: 33586478--33586594 Score: 189
Period size: 61 Copynumber: 1.9 Consensus size: 61
33586468 ATTGCATTAC
* * *
33586478 ACTGTACTGATACTGTATTGGGCTTAGGCCCATACTGTTATTGTATAGGGCTAAGGCCCAA
1 ACTGTACTGATACTGTATTGGGCTTAGGCCCACACTATTACTGTATAGGGCTAAGGCCCAA
* *
33586539 ACTGTACTGATACTGTATTGGGTTTAGGCCTACACTATTACTGTATAGGGCTAAGG
1 ACTGTACTGATACTGTATTGGGCTTAGGCCCACACTATTACTGTATAGGGCTAAGG
33586595 TCCAGACTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (61 bp):
ACTGTACTGATACTGTATTGGGCTTAGGCCCACACTATTACTGTATAGGGCTAAGGCCCAA
Found at i:33589996 original size:16 final size:17
Alignment explanation
Indices: 33589975--33590012 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
33589965 ATCAAACATT
33589975 ATTATAA-ATTATGG-TA
1 ATTATAATATT-TGGTTA
33589991 ATTATAATATTTGGTTA
1 ATTATAATATTTGGTTA
33590008 ATTAT
1 ATTAT
33590013 TATGATTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (17 bp):
ATTATAATATTTGGTTA
Found at i:33593587 original size:15 final size:16
Alignment explanation
Indices: 33593567--33593596 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33593557 TAGTTCCTTA
33593567 TTGATA-TGTGTTAAT
1 TTGATAGTGTGTTAAT
33593582 TTGATAGTGTGTTAA
1 TTGATAGTGTGTTAA
33593597 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (16 bp):
TTGATAGTGTGTTAAT
Found at i:33598454 original size:16 final size:16
Alignment explanation
Indices: 33598415--33598456 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
33598405 AAAAGTAGTT
*
33598415 GGTCAGAAATTTGATC
1 GGTCATAAATTTGATC
*
33598431 GAAT-ATAAATTTGATC
1 G-GTCATAAATTTGATC
33598447 GGTCATAAAT
1 GGTCATAAAT
33598457 GGTCTGGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (16 bp):
GGTCATAAATTTGATC
Found at i:33601515 original size:22 final size:22
Alignment explanation
Indices: 33601489--33601533 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
33601479 TCCGTCGTTT
33601489 TAACGATCGAGGTAAGTTTGTA
1 TAACGATCGAGGTAAGTTTGTA
33601511 TAACGATCGAGGTAAGTTTGTA
1 TAACGATCGAGGTAAGTTTGTA
33601533 T
1 T
33601534 GCTATAAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.09, G:0.27, T:0.33
Consensus pattern (22 bp):
TAACGATCGAGGTAAGTTTGTA
Found at i:33601681 original size:28 final size:29
Alignment explanation
Indices: 33601627--33601729 Score: 95
Period size: 28 Copynumber: 3.7 Consensus size: 29
33601617 CATATCAGCT
* * **
33601627 AAATTTGGCACTTAGTGTGCGGGACA-TC
1 AAATATGGCACTTAGTGTGTGAAACATTC
*
33601655 AAATATGGCACTTAGTGTGTGAAACATTG
1 AAATATGGCACTTAGTGTGTGAAACATTC
* * *
33601684 AAA-ATGGCACTTTGTGTGTGAAATATTG
1 AAATATGGCACTTAGTGTGTGAAACATTC
* *
33601712 AGA-ATGGCACTCAGTGTG
1 AAATATGGCACTTAGTGTG
33601730 CAAAATATCG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 60 0.94
29 4 0.06
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (29 bp):
AAATATGGCACTTAGTGTGTGAAACATTC
Found at i:33601737 original size:28 final size:28
Alignment explanation
Indices: 33601659--33601729 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
33601649 GACATCAAAT
*
33601659 ATGGCACTTAGTGTGTGAAACATTGAAA
1 ATGGCACTTAGTGTGTGAAATATTGAAA
* *
33601687 ATGGCACTTTGTGTGTGAAATATTGAGA
1 ATGGCACTTAGTGTGTGAAATATTGAAA
*
33601715 ATGGCACTCAGTGTG
1 ATGGCACTTAGTGTG
33601730 CAAAATATCG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.31
Consensus pattern (28 bp):
ATGGCACTTAGTGTGTGAAATATTGAAA
Found at i:33603937 original size:26 final size:25
Alignment explanation
Indices: 33603908--33604031 Score: 99
Period size: 26 Copynumber: 4.8 Consensus size: 25
33603898 CTTCCGGCCA
*
33603908 ACTCAAACTCAAGGTTCCTTGGACCC
1 ACTCAAACTCAAGGGTCCTT-GACCC
* * **
33603934 ACTCAAACTCAAGGGACCTCCGACTA
1 ACTCAAACTCAAGGGTCCT-TGACCC
*
33603960 ACTCAAACTCAAGAG-CTCTCTGA-CC
1 ACTCAAACTCAAGGGTC-CT-TGACCC
* *
33603985 AGTTCAAACTCAAGGGACCTCTGACCC
1 A-CTCAAACTCAAGGGTCCT-TGACCC
33604012 ATCTCAAACTCAAGGGTCCT
1 A-CTCAAACTCAAGGGTCCT
33604032 CGGAACCACT
Statistics
Matches: 79, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.03
26 57 0.72
27 20 0.25
ACGTcount: A:0.31, C:0.34, G:0.15, T:0.20
Consensus pattern (25 bp):
ACTCAAACTCAAGGGTCCTTGACCC
Found at i:33604841 original size:37 final size:38
Alignment explanation
Indices: 33604800--33604892 Score: 161
Period size: 38 Copynumber: 2.5 Consensus size: 38
33604790 AACCAGATTT
* *
33604800 TGATTCTGTCAAATTGTAA-CATTTAGAAGTTAAATTC
1 TGATTTTGTCAAATCGTAATCATTTAGAAGTTAAATTC
33604837 TGATTTTGTCAAATCGTAATCATTTAGAAGTTAAATTC
1 TGATTTTGTCAAATCGTAATCATTTAGAAGTTAAATTC
33604875 TGATTTTGTCAAATCGTA
1 TGATTTTGTCAAATCGTA
33604893 GCCGTTTATT
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
37 17 0.32
38 36 0.68
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (38 bp):
TGATTTTGTCAAATCGTAATCATTTAGAAGTTAAATTC
Found at i:33622170 original size:21 final size:21
Alignment explanation
Indices: 33622144--33622199 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
33622134 TGTGGTCCAA
*
33622144 GGGACACGCCCGTGTGACCTT
1 GGGACACGCCCGTGTGACCCT
33622165 GGGACACGCCCGTGTGACCCT
1 GGGACACGCCCGTGTGACCCT
*
33622186 AGGACACGCCCGTG
1 GGGACACGCCCGTG
33622200 CTGGAGGCCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.16, C:0.36, G:0.34, T:0.14
Consensus pattern (21 bp):
GGGACACGCCCGTGTGACCCT
Found at i:33624351 original size:48 final size:48
Alignment explanation
Indices: 33624231--33624510 Score: 220
Period size: 48 Copynumber: 5.8 Consensus size: 48
33624221 TAAGATGCCG
* * * * *
33624231 ATGCCATGTCACAAACATGGTCTTACACTGGCTCTCATATATC-GGTGCCT
1 ATGCCATGTCCCAAACATGGTCTTACACTAGC-C-CACATATCAAG-GCCA
* * *
33624281 ATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAAGGCCA
* * * * * * *
33624329 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTATCAATGTCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAAGGCCA
* * * * *
33624377 ATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATTTCAAGGCCA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAAGGCCA
** * *** * ** *
33624425 ATGCCATGTCCCGGACATGTTCTTACACTAGCTTTCATATTAATACCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAAGGCCA
* * * *
33624473 ATGTCATGTTCCAAACATGGTTTTACACTAGCTCACAT
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCCCACAT
33624511 GCCCGTTGTA
Statistics
Matches: 181, Mismatches: 48, Indels: 4
0.78 0.21 0.02
Matches are distributed among these distances:
48 150 0.83
49 2 0.01
50 29 0.16
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAAGGCCA
Found at i:33624414 original size:96 final size:96
Alignment explanation
Indices: 33624231--33624511 Score: 364
Period size: 96 Copynumber: 2.9 Consensus size: 96
33624221 TAAGATGCCG
* * * ** *
33624231 ATGCCATGTCACAAACATGGTCTTACACTGGCTCTCATATATCGGTGCCTATGCCATGTTCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-T-TATCAATGCCGATGCCATGTTCCAAA
* *
33624296 CATGGTCTTACACTAGCCCACATGTCGAGGCCA
64 CATGGTCTTACACTAGCTCACATGTCAAGGCCA
*
33624329 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTATCAATGTCGATGCCATGTTCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTATCAATGCCGATGCCATGTTCCAAACA
* * *
33624394 TGGTCTTACATTGGCTCACATTTCAAGGCCA
66 TGGTCTTACACTAGCTCACATGTCAAGGCCA
* * * * * * *
33624425 ATGCCATGTCCCGGACATGTTCTTACACTAGCTTTCATATTAATACCGATGTCATGTTCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTATCAATGCCGATGCCATGTTCCAAACA
*
33624490 TGGTTTTACACTAGCTCACATG
66 TGGTCTTACACTAGCTCACATG
33624512 CCCGTTGTAT
Statistics
Matches: 159, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
96 125 0.79
97 1 0.01
98 33 0.21
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.30
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTATCAATGCCGATGCCATGTTCCAAACA
TGGTCTTACACTAGCTCACATGTCAAGGCCA
Found at i:33626198 original size:46 final size:44
Alignment explanation
Indices: 33626101--33626215 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 44
33626091 GTACCGATGC
**
33626101 CATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAGCAAATG
* *
33626146 CATGTCCCAGACATGTTTTACACTGACTTACGTCTCG-AGGCAAATG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTCGTA-GCAAATG
*
33626192 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
33626216 AGCACTCATC
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
44 12 0.20
45 15 0.25
46 34 0.56
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGTAGCAAATG
Found at i:33626307 original size:140 final size:139
Alignment explanation
Indices: 33626051--33626309 Score: 328
Period size: 140 Copynumber: 1.8 Consensus size: 139
33626041 GTATTGATGC
*
33626051 CATGTCCCAAACATGGTCTTACACAAGCTCTAACATATCTGTACCGATGCCATGTCCCAGACATG
1 CATGTCCCAAACATGGTCTTACACAAGCACT-ACATATCTGTA-CGATGCCATGTCCCAGACATG
* * *
33626116 GTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGACATGTTTTACACTGACTTACGTCT
64 GTCTTACACTGACACATATCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGACTTACGTCT
33626181 CGAGGCAAATG
129 CGAGGCAAATG
* * ** *
33626192 CATGTCCCAAACAT-GTCTTACACTAGCACT-CATCTCAATGT-CGATGCTGTGTCCTAGACATG
1 CATGTCCCAAACATGGTCTTACACAAGCACTACATATC--TGTACGATGCCATGTCCCAGACATG
* *
33626254 GTCTTACACTGGATCTCATAAT-GTGGCCGATGCATGTCCCAAACATGTCTTACACT
64 GTCTTACACT-GA-CACAT-ATCGTAGCCGATGCATGTCCCAAACATGTCTTACACT
33626310 AGCTCACAAT
Statistics
Matches: 102, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
138 33 0.32
139 2 0.02
140 52 0.51
141 15 0.15
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (139 bp):
CATGTCCCAAACATGGTCTTACACAAGCACTACATATCTGTACGATGCCATGTCCCAGACATGGT
CTTACACTGACACATATCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGACTTACGTCTCG
AGGCAAATG
Found at i:33626927 original size:35 final size:35
Alignment explanation
Indices: 33626880--33626976 Score: 119
Period size: 34 Copynumber: 2.8 Consensus size: 35
33626870 GAATACATTT
33626880 TGGGCC-TAAGCCC-TTATCAGTAACAGTAGCAGTA
1 TGGGCCTTAAGCCCATT-TCAGTAACAGTAGCAGTA
* * *
33626914 TGGGCCTTAAGCCCATTTCAATAACAATAGCAGTC
1 TGGGCCTTAAGCCCATTTCAGTAACAGTAGCAGTA
* *
33626949 TGGG-CTTTAGCCCATTTCAGTAATAGTA
1 TGGGCCTTAAGCCCATTTCAGTAACAGTA
33626977 ATCAGTGCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
34 26 0.48
35 26 0.48
36 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (35 bp):
TGGGCCTTAAGCCCATTTCAGTAACAGTAGCAGTA
Found at i:33626966 original size:34 final size:35
Alignment explanation
Indices: 33626880--33626967 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 35
33626870 GAATACATTT
* *
33626880 TGGGCC-TAAGCCC-TTATCAGTAACAGTAGCAGTA
1 TGGGCCTTAAGCCCATT-TCAATAACAATAGCAGTA
*
33626914 TGGGCCTTAAGCCCATTTCAATAACAATAGCAGTC
1 TGGGCCTTAAGCCCATTTCAATAACAATAGCAGTA
*
33626949 TGGG-CTTTAGCCCATTTCA
1 TGGGCCTTAAGCCCATTTCA
33626968 GTAATAGTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
34 20 0.42
35 26 0.54
36 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (35 bp):
TGGGCCTTAAGCCCATTTCAATAACAATAGCAGTA
Found at i:33627414 original size:27 final size:26
Alignment explanation
Indices: 33627384--33627483 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 26
33627374 TACTGTACCG
*
33627384 GGGTATTATAGTCATTTTACCCTATAA
1 GGGTATT-TGGTCATTTTACCCTATAA
* * *
33627411 GGGTATTTCGGTCATTCTACCTTATAG
1 GGGTATTT-GGTCATTTTACCCTATAA
*
33627438 GGGTATTTCGATCATTTTACCCTATAA
1 GGGTATTT-GGTCATTTTACCCTATAA
33627465 GGGTATTTTGGTCATTTTA
1 GGGTA-TTTGGTCATTTTA
33627484 TCACATAAGG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.02
27 58 0.94
28 3 0.05
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (26 bp):
GGGTATTTGGTCATTTTACCCTATAA
Found at i:33627507 original size:54 final size:53
Alignment explanation
Indices: 33627394--33627510 Score: 137
Period size: 54 Copynumber: 2.2 Consensus size: 53
33627384 GGGTATTATA
* ** **
33627394 GTCATTTTACCCTATAAGGGTATTTCGGTCATTCTACCTTATAGGGGTATTTC
1 GTCATTTTACCCTATAAGGGTATTTCGGTCATTCTACCATATAGGGAAAAATC
* *
33627447 GATCATTTTACCCTATAAGGGTATTTTGGTCATTTTATCACATA-AGGGAAAAATC
1 G-TCATTTTACCCTATAAGGGTATTTCGGTCATTCTA-C-CATATAGGGAAAAATC
33627502 GTCATTTTA
1 GTCATTTTA
33627511 TCACATGAGG
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
53 1 0.02
54 41 0.76
55 9 0.17
56 3 0.06
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.40
Consensus pattern (53 bp):
GTCATTTTACCCTATAAGGGTATTTCGGTCATTCTACCATATAGGGAAAAATC
Found at i:33630164 original size:25 final size:25
Alignment explanation
Indices: 33630135--33630182 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
33630125 TTATAATATG
* * *
33630135 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
33630160 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
33630183 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:33630249 original size:20 final size:20
Alignment explanation
Indices: 33630226--33630264 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
33630216 TAAACATGGT
33630226 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
33630246 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
33630265 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:33630346 original size:23 final size:23
Alignment explanation
Indices: 33630316--33630388 Score: 110
Period size: 23 Copynumber: 3.1 Consensus size: 23
33630306 AGGAAGTGAA
*
33630316 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
33630339 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
33630363 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
33630386 AAA
1 AAA
33630389 AGAGGCAAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 24 0.53
24 21 0.47
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:33630371 original size:24 final size:23
Alignment explanation
Indices: 33630315--33630390 Score: 107
Period size: 24 Copynumber: 3.2 Consensus size: 23
33630305 GAGGAAGTGA
*
33630315 AAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
33630338 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
33630361 CAAAAGGGCTTACGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
33630386 AAAAG
1 AAAAG
33630391 AGGCAAGGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
23 21 0.45
24 25 0.53
25 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:33630638 original size:31 final size:31
Alignment explanation
Indices: 33630603--33630683 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 31
33630593 CGTTTACAGT
*
33630603 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
***
33630634 AAAGGCTTCGGCCCAGCGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
33630665 AAAGGGCTAT-GGCCCAGTA
1 AAA-GGCT-TCGGCCCAGTA
33630684 CATGTTTGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 30 0.71
32 11 0.26
33 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:33640528 original size:16 final size:16
Alignment explanation
Indices: 33640509--33640539 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33640499 CTTCTTCACT
33640509 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
33640525 TACTTACTTACTTAA
1 TACTCACTTACTTAA
33640540 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:33640545 original size:20 final size:20
Alignment explanation
Indices: 33640506--33640545 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
33640496 AAACTTCTTC
* *
33640506 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
33640526 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
33640546 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:33640919 original size:55 final size:55
Alignment explanation
Indices: 33640740--33640985 Score: 217
Period size: 55 Copynumber: 4.6 Consensus size: 55
33640730 ACCTTACCTT
* * * *
33640740 TGCCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGA-AACTTACCAT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAATAACTTACCAA
* * * * *
33640789 TGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCATAT-GT-ACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAATAACTTACCAA
* * * * *
33640842 TGTCATGCCTTGGCATGGTCTTACATGGGA-CCTTTACCTTATAATAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAATAACTTACCAA
* * * * *
33640897 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCGTTAGAA-ACCTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAATAACTTACCAA
33640951 TTGCCATGCCTTTG-CATGGTCTTACATGGTATCCT
1 -TGCCATGCC-TTGACATGGTCTTACATGGTATCCT
33640986 ACACATTCCT
Statistics
Matches: 159, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
49 30 0.19
50 1 0.01
52 2 0.01
53 40 0.25
54 11 0.07
55 70 0.44
56 5 0.03
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (55 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAATAACTTACCAA
Found at i:33646097 original size:20 final size:18
Alignment explanation
Indices: 33646072--33646108 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
33646062 ATTGCTAAGT
33646072 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
33646092 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
33646109 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:33668064 original size:13 final size:13
Alignment explanation
Indices: 33668045--33668076 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
33668035 CACACACGGG
33668045 CGTGTGACTTGGA
1 CGTGTGACTTGGA
*
33668058 TGTGTGACTTGGA
1 CGTGTGACTTGGA
33668071 CGTGTG
1 CGTGTG
33668077 GCATAAGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.41, T:0.34
Consensus pattern (13 bp):
CGTGTGACTTGGA
Found at i:33672993 original size:17 final size:17
Alignment explanation
Indices: 33672971--33673014 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
33672961 TTAAAACTTC
*
33672971 ATAGAAATCTCATGAAA
1 ATAGAAATCTCATCAAA
*
33672988 ATAG-AATCTTATCAAA
1 ATAGAAATCTCATCAAA
33673004 ATAGAAGATCT
1 ATAGAA-ATCT
33673015 TTGTACAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 14 0.61
17 5 0.22
18 4 0.17
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.27
Consensus pattern (17 bp):
ATAGAAATCTCATCAAA
Found at i:33688480 original size:40 final size:40
Alignment explanation
Indices: 33688379--33688561 Score: 248
Period size: 40 Copynumber: 4.5 Consensus size: 40
33688369 TATTCGGATG
33688379 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
33688422 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
**
33688461 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
33688501 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
*
33688541 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
33688562 ATACTTGGGT
Statistics
Matches: 129, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.02
39 21 0.16
40 73 0.57
41 2 0.02
42 28 0.22
43 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:33693315 original size:93 final size:93
Alignment explanation
Indices: 33693203--33693374 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
33693193 CGCCCATAAG
* *
33693203 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
33693268 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
33693296 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
33693361 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
33693375 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:33693371 original size:46 final size:46
Alignment explanation
Indices: 33693196--33693371 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
33693186 TGTAACCCGC
* * *
33693196 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
33693242 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
33693292 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
33693335 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
33693372 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:33699334 original size:40 final size:40
Alignment explanation
Indices: 33699238--33699421 Score: 230
Period size: 40 Copynumber: 4.5 Consensus size: 40
33699228 TATTCGAATG
*
33699238 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
*
33699281 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
**
33699321 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
33699361 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
* *
33699401 ATATCC-GGCTAAATCCTGAAG
1 ATATCCGGGCTAAGTCCCGAAG
33699422 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
39 14 0.11
40 81 0.64
41 2 0.02
43 30 0.24
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:33699985 original size:19 final size:19
Alignment explanation
Indices: 33699961--33700000 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
33699951 ATTTTGAGCA
33699961 TAGTATTAAAATCATTTTG
1 TAGTATTAAAATCATTTTG
33699980 TAGTATTAAAATCATTTTG
1 TAGTATTAAAATCATTTTG
33699999 TA
1 TA
33700001 TATATATGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (19 bp):
TAGTATTAAAATCATTTTG
Done.