Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 109 of 253
Found at i:34054729 original size:39 final size:39
Alignment explanation
Indices: 34054678--34054821 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
34054668 TGTGTGAGAT
34054678 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
34054717 TTATATCTGGGCTATGTCCCGAAGGCATTCCTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
34054756 TTATATCCGGGCTAAATCCCGAAGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
34054795 TTATATCCGAGCTAATTCCCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCA
34054822 ATTATGTTGG
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 95 1.00
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:34069227 original size:48 final size:48
Alignment explanation
Indices: 34069109--34069372 Score: 317
Period size: 48 Copynumber: 5.5 Consensus size: 48
34069099 TAAAGTACCA
* ** *
34069109 ATGCCATGTCCTAGACATGGTCTTA-CATGATTC-CATATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTATCA--AGGCACATATATCATCGCCG
* *
34069157 ATG-CATGTCCCAGACATGGTCTTATGATGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTATCAAGGCACATATATCATCGCCG
* **
34069204 ATGCCATGTCCCAGACATGGTCTTA-CACAAGCACATATATCATCGTTG
1 ATGCCATGTCCCAGACATGGTCTTATCA-AGGCACATATATCATCGCCG
* *
34069252 GTGCCATGTCCCAGACATGGTCTTA-CAAAGGCACATATATCATCCCCG
1 ATGCCATGTCCCAGACATGGTCTTATC-AAGGCACATATATCATCGCCG
34069300 ATGCCATGTCCCA-AGCATGGTCTT-TCACAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGA-CATGGTCTTATCA-AGGCACATATATCATCGCCG
*
34069348 ATGCCATGTCCCAGGCATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
34069373 CATGGAATCT
Statistics
Matches: 187, Mismatches: 19, Indels: 19
0.83 0.08 0.08
Matches are distributed among these distances:
46 1 0.01
47 40 0.21
48 145 0.78
49 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTATCAAGGCACATATATCATCGCCG
Found at i:34069301 original size:96 final size:96
Alignment explanation
Indices: 34069109--34069374 Score: 358
Period size: 96 Copynumber: 2.8 Consensus size: 96
34069099 TAAAGTACCA
* * ** *
34069109 ATGCCATGTCCTAGACATGGTCTTACATGATTC-CATATATCATCGCCAATG-CATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACA-CAAGCACATATATCATCGCCGATGCCATGTCCCAGAC
** * *
34069172 ATGGTCTTATGATGGCACATATATCATCGCCG
65 ATGGTCTTACAAAGGCACATATATCATCCCCG
** *
34069204 ATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCGTTGGTGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAGACA
34069269 TGGTCTTACAAAGGCACATATATCATCCCCG
66 TGGTCTTACAAAGGCACATATATCATCCCCG
* * *
34069300 ATGCCATGTCCCA-AGCATGGTCTTTCACAGGCACATATATCATCGCCGATGCCATGTCCCAGGC
1 ATGCCATGTCCCAGA-CATGGTCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAGAC
34069364 ATGGTCTTACA
65 ATGGTCTTACA
34069375 TGGAATCTCA
Statistics
Matches: 150, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
94 2 0.01
95 41 0.27
96 107 0.71
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAGACA
TGGTCTTACAAAGGCACATATATCATCCCCG
Found at i:34069369 original size:144 final size:143
Alignment explanation
Indices: 34069110--34069374 Score: 392
Period size: 144 Copynumber: 1.8 Consensus size: 143
34069100 AAAGTACCAA
* * ** *
34069110 TGCCATGTCCTAGACATGGTCTTACATGATTCCATATATCATCGCCAATGCATGTCCCAGACATG
1 TGCCATGTCCCAGACATGGTCTTACATAAGGCCATATATCATCCCCAATGCATGTCCCAGACATG
* *
34069175 GTCTTATGATGGCACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAAGCACAT
66 GTCTTATCAAGGCACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAAGCACAT
34069240 ATATCATCGTTGG
131 ATATCATCGTTGG
*
34069253 TGCCATGTCCCAGACATGGTCTTACA-AAGGCACATATATCATCCCCGATGCCATGTCCCA-AGC
1 TGCCATGTCCCAGACATGGTCTTACATAAGGC-CATATATCATCCCCAATG-CATGTCCCAGA-C
*
34069316 ATGGTCTT-TCACAGGCACATATATCATCGCCGATGCCATGTCCCAGGCATGGTCTTACA
63 ATGGTCTTATCA-AGGCACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACA
34069375 TGGAATCTCA
Statistics
Matches: 109, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
142 2 0.02
143 44 0.40
144 63 0.58
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (143 bp):
TGCCATGTCCCAGACATGGTCTTACATAAGGCCATATATCATCCCCAATGCATGTCCCAGACATG
GTCTTATCAAGGCACATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAAGCACAT
ATATCATCGTTGG
Found at i:34075396 original size:44 final size:43
Alignment explanation
Indices: 34075326--34075456 Score: 158
Period size: 44 Copynumber: 3.0 Consensus size: 43
34075316 GTTGACACTA
* *
34075326 ATCTGAGATATCGTGTAAGACCATGTCTGGGACACAGGCCTCG
1 ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCG
* * *
34075369 ATTTGAGATTTACGTGTAAGACTATGTCTGGGACATAGGCATCG
1 ATCTGAGATTT-CGTGTAAGACCATGTCTGGGACACAGGCATCG
* * *
34075413 TATCT--GATTTCGTGTAAGGCCCTGTCTGGGACAGAGGCATCG
1 -ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCG
34075455 AT
1 AT
34075457 ACTAATTACA
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
41 2 0.03
42 28 0.37
43 14 0.18
44 29 0.38
45 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCG
Found at i:34078043 original size:42 final size:42
Alignment explanation
Indices: 34077990--34078093 Score: 181
Period size: 42 Copynumber: 2.5 Consensus size: 42
34077980 ATGCTAATAG
* *
34077990 CCCAGTTATGGTCTTACACGAAGTCTCATATTGATGCCATAT
1 CCCAGATATGGTCTTACACGAAGTCTCATACTGATGCCATAT
*
34078032 CCCAGATATGGTCTTACACGAAGTTTCATACTGATGCCATAT
1 CCCAGATATGGTCTTACACGAAGTCTCATACTGATGCCATAT
34078074 CCCAGATATGGTCTTACACG
1 CCCAGATATGGTCTTACACG
34078094 TAGGCTTAGT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (42 bp):
CCCAGATATGGTCTTACACGAAGTCTCATACTGATGCCATAT
Found at i:34083759 original size:10 final size:10
Alignment explanation
Indices: 34083741--34083770 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
34083731 TAAAAATAAG
*
34083741 TTATGATTTT
1 TTATAATTTT
34083751 TTATAATTTT
1 TTATAATTTT
34083761 TTATAATTTT
1 TTATAATTTT
34083771 CTAATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (10 bp):
TTATAATTTT
Found at i:34086538 original size:38 final size:38
Alignment explanation
Indices: 34086487--34086777 Score: 204
Period size: 38 Copynumber: 6.9 Consensus size: 38
34086477 TAAAAAAACA
34086487 TGGTGCTAAGTGGATATACCACGGTTATACATGTAACG
1 TGGTGCTAAGTGGATATACCACGGTTATACATGTAACG
**
34086525 TGGTGCTAAGTGGATATACAACGATTACACATATTGATACATGTAACG
1 TGGTGCTAAGTGGATAT---AC-----CAC-GGTT-ATACATGTAACG
* *
34086573 TGGTGCTAAGCGGATATACCACGATTACACATATTGATACATGTAACG
1 TGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAACG
* *
34086621 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAATG
1 TGGTGCTAAGTGGATATACCACGGTTATACATGTAACG
* * *
34086659 TGGCGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACG
1 TGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------TAACG
* * *
34086706 TGGTGCTAAGTGGATATACCACAGTTAAACATGTAATG
1 TGGTGCTAAGTGGATATACCACGGTTATACATGTAACG
*
34086744 TGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 TGGTGCTAAGTGGATATACCACGGTTATACATGT
34086778 TAATTTGAAA
Statistics
Matches: 203, Mismatches: 22, Indels: 56
0.72 0.08 0.20
Matches are distributed among these distances:
38 86 0.42
39 2 0.01
40 6 0.03
41 4 0.02
44 2 0.01
45 5 0.02
46 3 0.01
47 29 0.14
48 66 0.33
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (38 bp):
TGGTGCTAAGTGGATATACCACGGTTATACATGTAACG
Found at i:34086588 original size:48 final size:48
Alignment explanation
Indices: 34086513--34086724 Score: 248
Period size: 48 Copynumber: 4.6 Consensus size: 48
34086503 TACCACGGTT
34086513 ATACATGTAACGTGGTGCTAAGTGGATATACAACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACAACGATTACACATATTG
* *
34086561 ATACATGTAACGTGGTGCTAAGCGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACAACGATTACACATATTG
* *
34086609 ATACATGTAACGTGGTGCTAAGTGGATATACCACG-GT-----TA---
1 ATACATGTAACGTGGTGCTAAGTGGATATACAACGATTACACATATTG
* * * * * *
34086648 A-ACATGTAATGTGGCGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACAACGATTACACATATTG
*
34086695 ATTCAT-TAACGTGGTGCTAAGTGGATATAC
1 ATACATGTAACGTGGTGCTAAGTGGATATAC
34086725 CACAGTTAAA
Statistics
Matches: 142, Mismatches: 12, Indels: 21
0.81 0.07 0.12
Matches are distributed among these distances:
38 30 0.21
39 2 0.01
42 2 0.01
44 2 0.01
47 23 0.16
48 83 0.58
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACAACGATTACACATATTG
Found at i:34086739 original size:85 final size:86
Alignment explanation
Indices: 34086563--34086775 Score: 338
Period size: 85 Copynumber: 2.5 Consensus size: 86
34086553 ACATATTGAT
* * * *
34086563 ACATGTAACGTGGTGCTAAGCGGATATACCACGATTACACATATTGATACATGTAACGTGGTGCT
1 ACATGTAATGTGGTGCTAAGTGGATATGCCACGGTTACACATATTGATACATGTAACGTGGTGCT
*
34086628 AAGTGGATATACCACGGTTAA
66 AAGTGGATATACCACAGTTAA
* * *
34086649 ACATGTAATGTGGCGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT-TAACGTGGTGCT
1 ACATGTAATGTGGTGCTAAGTGGATATGCCACGGTTACACATATTGATACATGTAACGTGGTGCT
34086713 AAGTGGATATACCACAGTTAA
66 AAGTGGATATACCACAGTTAA
*
34086734 ACATGTAATGTGGTGCTAAGTGGATATGCCACGGTTATACAT
1 ACATGTAATGTGGTGCTAAGTGGATATGCCACGGTTACACAT
34086776 GTTAATTTGA
Statistics
Matches: 116, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
85 71 0.61
86 45 0.39
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (86 bp):
ACATGTAATGTGGTGCTAAGTGGATATGCCACGGTTACACATATTGATACATGTAACGTGGTGCT
AAGTGGATATACCACAGTTAA
Found at i:34090035 original size:15 final size:15
Alignment explanation
Indices: 34090015--34090056 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
34090005 GCTGTAAATG
34090015 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
34090030 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
34090045 GGATTTCCTTAT
1 GGATTTCCTTAT
34090057 TCTGGGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:34092872 original size:48 final size:48
Alignment explanation
Indices: 34092796--34093043 Score: 241
Period size: 48 Copynumber: 5.4 Consensus size: 48
34092786 TACCACGGTT
* * *
34092796 ATACGTGTAACGTGGTGCTAAGTGGATATACAATGATTACAAATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACAAATATTG
* * *
34092844 ATACATGTAACGTGGTGCTAAGCGGATATACCACAATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACAAATATTG
* * * * *
34092892 ATACATGTAACGTGGTGCTAAATGGAAATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACAAATATTG
* *
34092940 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTA-AAA-A-TG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACAAATATTG
* * *
34092984 -TA-A--T---GTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACAAATATTG
* * *
34093025 ATTCAT-TAATGTGGAGCTA
1 ATACATGTAACGTGGTGCTA
34093044 TGTGCTAAAA
Statistics
Matches: 168, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
38 27 0.16
39 2 0.01
40 1 0.01
41 3 0.02
42 2 0.01
43 2 0.01
44 3 0.02
45 1 0.01
46 2 0.01
47 37 0.22
48 88 0.52
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACAAATATTG
Found at i:34095351 original size:42 final size:42
Alignment explanation
Indices: 34095304--34095385 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
34095294 CTGGTGGGTG
34095304 ACATCCATAAAGGGTTGTACCAAGTTGATACATCACCACAAC
1 ACATCCATAAAGGGTTGTACCAAGTTGATACATCACCACAAC
*
34095346 ACATCCATAAAGGGTTGTACCAATTTGATACATCACCACA
1 ACATCCATAAAGGGTTGTACCAAGTTGATACATCACCACA
34095386 GCAAAGAGGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (42 bp):
ACATCCATAAAGGGTTGTACCAAGTTGATACATCACCACAAC
Found at i:34099251 original size:19 final size:19
Alignment explanation
Indices: 34099223--34099261 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
34099213 AGAGCGAAAG
34099223 AAACGAG-AAACGGGCCAA
1 AAACGAGAAAACGGGCCAA
*
34099241 AAACAGAGAAAATGGGCCAA
1 AAAC-GAGAAAACGGGCCAA
34099261 A
1 A
34099262 GTATGAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.54, C:0.18, G:0.26, T:0.03
Consensus pattern (19 bp):
AAACGAGAAAACGGGCCAA
Found at i:34103377 original size:11 final size:12
Alignment explanation
Indices: 34103355--34103383 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
34103345 TCATATTGCC
34103355 GAAAATAGAAAA
1 GAAAATAGAAAA
34103367 GAAAA-AGAAAA
1 GAAAATAGAAAA
34103378 GAAAAT
1 GAAAAT
34103384 GCTTGCTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (12 bp):
GAAAATAGAAAA
Found at i:34104210 original size:44 final size:44
Alignment explanation
Indices: 34104160--34104318 Score: 195
Period size: 44 Copynumber: 3.7 Consensus size: 44
34104150 TATGCGATAT
34104160 CGTGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTTGTATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTG-ATTTA
* *
34104204 CGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTTA
*
34104246 CGTGTAAGACC-CTATCTGGGACAG-TGGCATCGATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTTA
* * *
34104289 CATGTAAGACCACGTCTAGGACGTTAGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
34104319 TGTACGAGCA
Statistics
Matches: 99, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
42 30 0.30
43 34 0.34
44 35 0.35
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTTA
Found at i:34112699 original size:38 final size:39
Alignment explanation
Indices: 34112599--34112821 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 39
34112589 TTGAATGATG
* *
34112599 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
34112638 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
34112679 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
34112717 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
34112756 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
34112795 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
34112822 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 38 0.23
39 36 0.22
40 78 0.48
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:34112843 original size:79 final size:79
Alignment explanation
Indices: 34112652--34112854 Score: 202
Period size: 79 Copynumber: 2.6 Consensus size: 79
34112642 GGACTAAGAT
** * * *
34112652 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCT-AA-GCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACT
*
34112714 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** * * *
34112729 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
34112793 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
34112809 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
34112855 TACGTGATTT
Statistics
Matches: 107, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
76 1 0.01
77 31 0.29
78 3 0.03
79 47 0.44
80 25 0.23
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:34119897 original size:47 final size:47
Alignment explanation
Indices: 34119834--34120289 Score: 844
Period size: 47 Copynumber: 9.7 Consensus size: 47
34119824 ATGATAGTAT
34119834 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34119881 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
34119928 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
34119975 GGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34120022 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34120068 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34120114 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34120161 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
34120208 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
34120257 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
34120290 CCCGAAGGGC
Statistics
Matches: 400, Mismatches: 5, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
46 92 0.23
47 263 0.66
49 41 0.10
50 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:34120242 original size:233 final size:236
Alignment explanation
Indices: 34119834--34120289 Score: 855
Period size: 233 Copynumber: 1.9 Consensus size: 236
34119824 ATGATAGTAT
34119834 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
34119899 ATGAATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
34119964 ATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTG-TATATATGTGATAAGGCCTA
131 ATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGATATATATGTGATAAGGCCTA
34120028 ATGGCCGATGTGATGAATGTGA-AAGTGTATATAGTGATAA
196 ATGGCCGATGTGATGAATGTGATAAGTGTATATAGTGATAA
34120068 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
34120132 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
34120197 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCT
131 ATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTG-ATATATATGTGATAAGGCCT
34120262 AATGGCCGATGTGATGAATGTGATAAGT
195 AATGGCCGATGTGATGAATGTGATAAGT
34120290 CCCGAAGGGC
Statistics
Matches: 216, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
233 132 0.61
234 39 0.18
235 41 0.19
236 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (236 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGATATATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGATAAGTGTATATAGTGATAA
Found at i:34120463 original size:37 final size:37
Alignment explanation
Indices: 34120407--34120485 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
34120397 CCGAGCTCTA
* * *
34120407 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
34120444 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
34120481 AAGAC
1 AAGAC
34120486 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:34122387 original size:43 final size:43
Alignment explanation
Indices: 34122339--34122484 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
34122329 TTGGTTTTCA
34122339 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34122382 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34122425 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
34122468 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
34122485 TTGAAATGCA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:34122501 original size:29 final size:29
Alignment explanation
Indices: 34122466--34122539 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
34122456 GTTGTGAGAT
* *
34122466 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
34122495 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
34122524 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
34122540 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:34123038 original size:76 final size:79
Alignment explanation
Indices: 34122930--34123116 Score: 227
Period size: 77 Copynumber: 2.4 Consensus size: 79
34122920 GAGTTACTAA
** *
34122930 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCT-AAGTCCGAGAGCATT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAACCCCAAGAGCATT
*
34122994 CATGCTAGTGATGT
66 CATGCTAGTGATAT
* * * *
34123008 ATCCGGGCTAAGT-TC-AAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCAAGAGCATT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAACCCCAAGAGCATT
* * *
34123071 CGTGCTGGTGTTAT
66 CATGCTAGTGATAT
* * *
34123085 ATCCGGGCTAGGTCCCGAAGAGTAATCATGCT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
34123117 GGTGACGTGT
Statistics
Matches: 90, Mismatches: 16, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
76 29 0.32
77 35 0.39
78 14 0.16
79 12 0.13
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAACCCCAAGAGCATT
CATGCTAGTGATAT
Found at i:34123076 original size:39 final size:38
Alignment explanation
Indices: 34122930--34123099 Score: 205
Period size: 38 Copynumber: 4.4 Consensus size: 38
34122920 GAGTTACTAA
*
34122930 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATAT
1 ATCCGGGCTAAGT-CC-AAGAGCATTCATGCTAGTGATAT
* *
34122970 ATCCGGGCTAAGTCCGAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCAAGAGCATTCATGCTAGTGATAT
* *
34123008 ATCCGGGCTAAGTTCAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCAAGAGCATTCATGCTAGTGATAT
* ** * * *
34123046 ATCCGTGCTAAACCCCAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCT-AAGTCCAAGAGCATTCATGCTAGTGATAT
*
34123085 ATCCGGGCTAGGTCC
1 ATCCGGGCTAAGTCC
34123100 CGAAGAGTAA
Statistics
Matches: 112, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 65 0.58
39 34 0.30
40 13 0.12
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (38 bp):
ATCCGGGCTAAGTCCAAGAGCATTCATGCTAGTGATAT
Found at i:34126626 original size:47 final size:47
Alignment explanation
Indices: 34126563--34126971 Score: 768
Period size: 47 Copynumber: 8.7 Consensus size: 47
34126553 ATGATAGTAT
34126563 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34126610 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
34126657 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34126704 GGCCTAATGGCCGATGTGATGAAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATG-AATGTGAAAGTGTATATATGTGATAA
34126752 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34126798 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34126845 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
34126892 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-ATATGTGATAA
34126939 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
34126972 CCCGAAGGGC
Statistics
Matches: 356, Mismatches: 2, Indels: 7
0.98 0.01 0.02
Matches are distributed among these distances:
46 46 0.13
47 250 0.70
48 60 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:34127156 original size:35 final size:36
Alignment explanation
Indices: 34127089--34127164 Score: 118
Period size: 35 Copynumber: 2.1 Consensus size: 36
34127079 CCGAGCTCTA
* *
34127089 AAGACCCGATGACTACGTGTGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGATTATGTCCGGGT
*
34127125 AAGACCCGATAACTTCGTGT-GGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGATTATGTCCGGGT
34127160 AAGAC
1 AAGAC
34127165 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
35 19 0.51
36 18 0.49
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (36 bp):
AAGACCCGATAACTACGTGTGGGATTATGTCCGGGT
Found at i:34130325 original size:37 final size:35
Alignment explanation
Indices: 34130260--34130388 Score: 111
Period size: 37 Copynumber: 3.5 Consensus size: 35
34130250 CTAAGATCCA
34130260 AAGGCATTGTGCGAGTACTAAATCCGGGCTAAGCCCG
1 AAGGCATTGTGCGAGTACT-AATCCGGGCTAA-CCCG
*
34130297 AAGGCATTCGTGCGAGATACT-ATTCGGGCTAACCCG
1 AAGGCATT-GTGCGAG-TACTAATCCGGGCTAACCCG
* * * *
34130333 -A-GCATTTGTGCGATTACAAATCCGGGTTAAGTCCG
1 AAGGCA-TTGTGCGAGTACTAATCCGGGCTAA-CCCG
*
34130368 AAGGCATCTTGTGCGATTACT
1 AAGGCA--TTGTGCGAGTACT
34130389 CTAACCGGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
33 3 0.04
34 18 0.24
35 6 0.08
36 5 0.07
37 21 0.28
38 19 0.25
39 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (35 bp):
AAGGCATTGTGCGAGTACTAATCCGGGCTAACCCG
Found at i:34130344 original size:34 final size:37
Alignment explanation
Indices: 34130207--34130388 Score: 142
Period size: 38 Copynumber: 4.9 Consensus size: 37
34130197 TGAATGATGT
* * *
34130207 CGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGCCCGAAGGCATTTGTGC-GAGT-ACTA-ATC
* * *
34130246 CGGACTAAGATCCAAAGGCA-TTGTGCGAGTACTAAATC
1 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTACT-AATC
* *
34130284 CGGGCTAAGCCCGAAGGCATTCGTGCGAGATACT-ATT
1 CGGGCTAAGCCCGAAGGCATTTGTGCGAG-TACTAATC
* *
34130321 CGGGCTAA-CCCG-A-GCATTTGTGCGATTACAAATC
1 CGGGCTAAGCCCGAAGGCATTTGTGCGAGTACTAATC
* * *
34130355 CGGGTTAAGTCCGAAGGCATCTTGTGCGATTACT
1 CGGGCTAAGCCCGAAGGCAT-TTGTGCGAGTACT
34130389 CTAACCGGTA
Statistics
Matches: 117, Mismatches: 16, Indels: 21
0.76 0.10 0.14
Matches are distributed among these distances:
33 3 0.03
34 20 0.17
35 4 0.03
36 5 0.04
37 22 0.19
38 33 0.28
39 16 0.14
40 14 0.12
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (37 bp):
CGGGCTAAGCCCGAAGGCATTTGTGCGAGTACTAATC
Found at i:34135249 original size:38 final size:39
Alignment explanation
Indices: 34135149--34135371 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 39
34135139 TTGAATGATG
* *
34135149 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
34135188 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
34135229 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
34135267 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
34135306 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
34135345 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
34135372 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 38 0.23
39 36 0.22
40 78 0.48
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:34135393 original size:79 final size:79
Alignment explanation
Indices: 34135202--34135404 Score: 202
Period size: 79 Copynumber: 2.6 Consensus size: 79
34135192 GGACTAAGAT
** * * *
34135202 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCT-AA-GCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACT
*
34135264 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** * * *
34135279 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
34135343 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
34135359 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
34135405 TACGTGATTT
Statistics
Matches: 107, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
76 1 0.01
77 31 0.29
78 3 0.03
79 47 0.44
80 25 0.23
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:34143812 original size:92 final size:93
Alignment explanation
Indices: 34143698--34144067 Score: 557
Period size: 92 Copynumber: 4.0 Consensus size: 93
34143688 TTAGGATTTT
**
34143698 ATGTGATGAATGTGAATGTGTATATATGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
* *
34143762 TGCATATGTGTGAAAGGCTGAATGGCCA
66 TGCATATATGTGAAAGGCCGAATGGCCA
* *
34143790 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
34143855 TGCATATATGTGATAAGGCCGAATGGCCT
66 TGCATATATGTGA-AAGGCCGAATGGCCA
*
34143884 ATGTGATGAATGTGAACATGTATATATGTGATGAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
*
34143949 TGCATATATATG-AAGGCCGAATGGCCA
66 TGCATATATGTGAAAGGCCGAATGGCCA
* * * * * *
34143976 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
34144041 TGCATATATGTGGTAAA-GCCGAATGGC
66 TGCATATATGT-G-AAAGGCCGAATGGC
34144068 TAGTGTGAAA
Statistics
Matches: 253, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
92 114 0.45
93 41 0.16
94 96 0.38
95 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (93 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATATGTGAAAGGCCGAATGGCCA
Found at i:34143840 original size:47 final size:47
Alignment explanation
Indices: 34143698--34144067 Score: 523
Period size: 47 Copynumber: 8.0 Consensus size: 47
34143688 TTAGGATTTT
** *
34143698 ATGTGATGAATGTGAATGTGTATATATGTGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
34143744 ATGTGATGAATGTGAGCATGCATATGTGTGA-AAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
34143790 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34143837 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34143884 ATGTGATGAATGTGAACATGTATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34143931 ATGTGATGAATGTGAGCATGCATATATATG--AAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34143976 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
34144023 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
34144068 TAGTGTGAAA
Statistics
Matches: 287, Mismatches: 33, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
45 46 0.16
46 61 0.21
47 180 0.63
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:34143965 original size:139 final size:140
Alignment explanation
Indices: 34143698--34144067 Score: 530
Period size: 139 Copynumber: 2.7 Consensus size: 140
34143688 TTAGGATTTT
*** * *
34143698 ATGTGATGAATGTGAATGTGTATATATGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * * *
34143762 TGCATATGTGTGA-AAGGCTGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGATAAGG
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATATGA-AAGG
34143826 CCGAATGGCCA
130 CCGAATGGCCA
*
34143837 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
34143902 TGTATATATGTGATGAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATATATG-AAGGC
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATATGAAAGGC
34143966 CGAATGGCCA
131 CGAATGGCCA
* * *
34143976 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
34144041 TGCATATATGTGGTAAAGCCGAATGGC
66 TGCATATATGTGATAAGGCCGAATGGC
34144068 TAGTGTGAAA
Statistics
Matches: 206, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
139 131 0.64
140 37 0.18
141 38 0.18
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (140 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATATGAAAGGC
CGAATGGCCA
Found at i:34144002 original size:23 final size:23
Alignment explanation
Indices: 34143931--34144003 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
34143921 CGAATGGCCA
34143931 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
* * *
34143954 ATAT-ATGAA-G-GCCGAATGGCCA-
1 ATGTGATGAATGTG-AGCAT-G-CAT
34143976 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
34143999 ATGTG
1 ATGTG
34144004 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
20 1 0.03
21 4 0.11
22 11 0.30
23 16 0.43
24 4 0.11
25 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (23 bp):
ATGTGATGAATGTGAGCATGCAT
Found at i:34144011 original size:186 final size:185
Alignment explanation
Indices: 34143697--34144075 Score: 580
Period size: 186 Copynumber: 2.0 Consensus size: 185
34143687 TTTAGGATTT
**
34143697 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCGAATGGCCAATGTGATGAATGTGAGCA
1 TATGTGATGAATGTGAACATGTATATATGTGATAAGGCGAATGGCCAATGTGATGAATGTGAGCA
* * * * *
34143762 TGCATATGTGTGAAAGGCTGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGATAAGGC
66 TGCATATATATGAAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGC
* * *
34143827 CGAATGGCCAATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCC
131 CGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGG-C
*
34143883 TATGTGATGAATGTGAACATGTATATATGTGATGAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGTATATATGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAGC
* * *
34143948 ATGCATATATATG-AAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGG
65 ATGCATATATATGAAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGG
* *
34144012 CCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
130 CCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGC
34144068 TAGTGTGA
1 TA-TGTGA
34144076 AATATGTAGG
Statistics
Matches: 175, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
185 3 0.02
186 134 0.77
187 38 0.22
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (185 bp):
TATGTGATGAATGTGAACATGTATATATGTGATAAGGCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATATATGAAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAGGC
CGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCGAATGGC
Found at i:34144288 original size:37 final size:37
Alignment explanation
Indices: 34144229--34144378 Score: 223
Period size: 37 Copynumber: 4.1 Consensus size: 37
34144219 TGGAATATAT
* * *
34144229 TCCGGGTGAGA-CCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
34144265 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
34144302 CCCGGGTAAGACCCGA-GACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
34144338 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
34144375 TCCG
1 TCCG
34144379 AGCTAAAGGT
Statistics
Matches: 104, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
36 45 0.43
37 59 0.57
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:34144349 original size:73 final size:73
Alignment explanation
Indices: 34144230--34144372 Score: 225
Period size: 73 Copynumber: 2.0 Consensus size: 73
34144220 GGAATATATT
* *
34144230 CCGGGTGAGACCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATGACTACGTGTGGA
1 CCGGGTAAGACCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATAACTACGTGTGGA
34144295 GATTTTGC
66 GATTTTGC
* * *
34144303 CCGGGTAAGACCCGA-GACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTTCGTGTGG
1 CCGGGTAAGA-CCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATAACTACGTGTGG
34144367 AGATTT
65 AGATTT
34144373 CGTCCGAGCT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 60 0.94
74 4 0.06
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (73 bp):
CCGGGTAAGACCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATAACTACGTGTGGA
GATTTTGC
Found at i:34145826 original size:120 final size:120
Alignment explanation
Indices: 34145613--34146124 Score: 772
Period size: 120 Copynumber: 4.3 Consensus size: 120
34145603 GAGAATTGAG
* * *
34145613 AGTGAAATGTCCGGGCTAAATCCCGAAGAGCATTCGTGTTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* * *
34145678 AAGACCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
34145733 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTTCTAGTGATGTATCCGGGCTAAGTTCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* *
34145798 AAGAGCATTTGTGCTAGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
34145853 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATTCGGACTAAGTTTCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
*
34145918 AAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
34145973 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* * * ** * *
34146038 AAGAGCATTCGTGCTACTGATATATCCGTGCTAAACCCCGAAGAGCATTTGTACT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
34146093 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCA
34146125 ATCATGCTGG
Statistics
Matches: 356, Mismatches: 36, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
120 356 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (120 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:34146136 original size:40 final size:40
Alignment explanation
Indices: 34145622--34146124 Score: 691
Period size: 40 Copynumber: 12.6 Consensus size: 40
34145612 GAGTGAAATG
* *
34145622 TCCGGGCTAAATCCCGAAGAGCATTCGTGTTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
34145662 TCCGGACTAAGTTCCGAAGACCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
34145702 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
34145742 TCCGGGCTAAATCCCGAAGAGCATTCGTTCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
34145782 TCCGGGCTAAGTTCCGAAGAGCATTTGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
34145822 TCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
34145862 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * ** *
34145902 TTCGGACTAAGTTTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
34145942 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
34145982 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * * *
34146022 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTACTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * * *
34146062 TCCGTGCTAAACCCCGAAGAGCATTTGTACTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
34146102 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
34146125 ATCATGCTGG
Statistics
Matches: 409, Mismatches: 54, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 409 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:34150223 original size:47 final size:47
Alignment explanation
Indices: 34150169--34150542 Score: 568
Period size: 47 Copynumber: 8.0 Consensus size: 47
34150159 TTAGGATTTT
** *
34150169 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
34150216 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
34150263 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34150310 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34150357 ATGTGATGAATGTGAACATGTATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34150404 ATGTGATGAATGTGAGCATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
34150451 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
34150498 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
34150543 TTGTGTGAAA
Statistics
Matches: 296, Mismatches: 31, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 296 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:34150457 original size:22 final size:22
Alignment explanation
Indices: 34150432--34150502 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 22
34150422 TGCATATATA
34150432 TGATAAGGCCGAATGGCCAATG
1 TGATAAGGCCGAATGGCCAATG
* * *
34150454 TGATGAATGTG-AGCAT-GCATATATG
1 TGAT-AA-G-GCCGAATGGC-CA-ATG
34150479 TGATAAGGCCGAATGGCCAATG
1 TGATAAGGCCGAATGGCCAATG
34150501 TG
1 TG
34150503 GTGAATATGA
Statistics
Matches: 36, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
22 10 0.28
23 9 0.25
24 9 0.25
25 8 0.22
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (22 bp):
TGATAAGGCCGAATGGCCAATG
Found at i:34150755 original size:37 final size:37
Alignment explanation
Indices: 34150705--34150826 Score: 199
Period size: 37 Copynumber: 3.3 Consensus size: 37
34150695 GGAAATATAT
* *
34150705 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTTTG
34150742 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTTTG
* * *
34150779 CCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTTTG
34150816 TCCGGGTAAGA
1 TCCGGGTAAGA
34150827 TACTTCGTGT
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 79 1.00
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTTTG
Found at i:34156666 original size:42 final size:43
Alignment explanation
Indices: 34156565--34156692 Score: 138
Period size: 43 Copynumber: 3.0 Consensus size: 43
34156555 AGCTCATACA
* ***
34156565 ATGCCAACATCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTACACAAAATCAAATATCG
*
34156608 ATGCC-ACTGCCCCAGACAGGGTCTTACACAAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACAAAATCAAATATCG
* *
34156650 ATGCCAACGTCCCAGACATGGTCTTACACTAAAA-CACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACAC-AAAATCAAATATCG
34156693 GATCCTATGT
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
42 33 0.46
43 38 0.53
44 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACAAAATCAAATATCG
Found at i:34161671 original size:11 final size:11
Alignment explanation
Indices: 34161655--34161685 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
34161645 TAATAGCCAG
34161655 ATCTCAAATCT
1 ATCTCAAATCT
34161666 ATCTCAAATCT
1 ATCTCAAATCT
34161677 ATCTTCAAA
1 ATC-TCAAA
34161686 AACACTGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.74
12 5 0.26
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.35
Consensus pattern (11 bp):
ATCTCAAATCT
Found at i:34165975 original size:19 final size:19
Alignment explanation
Indices: 34165951--34165988 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
34165941 ACTCCAATAC
34165951 AAAACACATCTTTAATATT
1 AAAACACATCTTTAATATT
*
34165970 AAAACATATCTTTAATATT
1 AAAACACATCTTTAATATT
34165989 TCATCATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAACACATCTTTAATATT
Found at i:34167200 original size:56 final size:56
Alignment explanation
Indices: 34167137--34167276 Score: 190
Period size: 56 Copynumber: 2.5 Consensus size: 56
34167127 CATGGCATCA
*
34167137 ATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATTGATACGTGATTCCG
1 ATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATACGTGATTCCG
* * * * *
34167193 ATATATGTGTGCGAGTAAGACCACATTTAATATGTTGGCATCGATATGTGATTCTG
1 ATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATACGTGATTCCG
* *
34167249 ATATATGTGATTACATGTAAGACCACGT
1 ATATATGTG--TGCAAGTAAGACCACGT
34167277 CTGGGACGTT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
56 59 0.82
58 13 0.18
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATACGTGATTCCG
Found at i:34176438 original size:68 final size:64
Alignment explanation
Indices: 34176200--34176452 Score: 185
Period size: 68 Copynumber: 3.9 Consensus size: 64
34176190 CCATAGTTCG
* * * * * *
34176200 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTAT-CTCG
1 GCTCTCTTGT-CTACATGATGTACACATAGCACCACACATGTGACCTAGCTACA-TATATCCT-G
34176261 TA
63 TA
* * * * * *
34176263 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGTGACCTAGCTACATATATCCTG
1 GCTCTCTTGTCTACATGATG---TACACATAGCACCACACATGTGACCTAGCTACATATATCCTG
34176328 TA
63 TA
* * * * *
34176330 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGTGACCTAGCTACATCATAATGTCTT
1 GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGTGACCTAGCTACAT-AT-A--TCCT
34176395 GTA
62 GTA
* *
34176398 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGATGTACACAT-AGCACCACACATGTGACCTAGCTACATA
34176453 CCATCTGTAT
Statistics
Matches: 157, Mismatches: 20, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.11
64 28 0.18
65 2 0.01
66 24 0.15
67 29 0.18
68 54 0.34
69 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGATGTACACATAGCACCACACATGTGACCTAGCTACATATATCCTGTA
Found at i:34180544 original size:12 final size:12
Alignment explanation
Indices: 34180527--34180558 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
34180517 GAGTTAAGAG
34180527 TTTGGGAAACTA
1 TTTGGGAAACTA
34180539 TTTGGGAAACTA
1 TTTGGGAAACTA
34180551 TTTGGGAA
1 TTTGGGAA
34180559 TTCTTCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.34
Consensus pattern (12 bp):
TTTGGGAAACTA
Found at i:34184211 original size:40 final size:40
Alignment explanation
Indices: 34184137--34184444 Score: 388
Period size: 40 Copynumber: 7.6 Consensus size: 40
34184127 AACCCAAGTA
* *
34184137 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
34184176 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
34184216 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
* *
34184259 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
34184299 CCTTCGGGACTTAGCCCAGATATAGGAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-G-TC-ACTAGCACAAATG
* *
34184342 CCTTTGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* ** *
34184382 CCTTCAGGACTTAGCCCGGATATAGGAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
34184422 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
34184445 CATCCGAATA
Statistics
Matches: 234, Mismatches: 25, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
39 13 0.06
40 147 0.63
41 3 0.01
42 2 0.01
43 68 0.29
44 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:34184257 original size:83 final size:83
Alignment explanation
Indices: 34184137--34184444 Score: 468
Period size: 83 Copynumber: 3.8 Consensus size: 83
34184127 AACCCAAGTA
* *
34184137 CCTTCGGGATTTAG-CCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
34184198 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
* *
34184216 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
*
34184281 TAGTCACTAGCACAAATA
66 TAGTCACTAGCACAAATG
* * * *
34184299 CCTTCGGGACTTAGCCCAGATATAGGAACTACTCGCACAAATGCCTTTGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
34184364 TAGTCACTAGCACAAATG
66 TAGTCACTAGCACAAATG
* *
34184382 CCTTCAGGACTTAGCCCGGATATAGGAACT--T-GCACAAATGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
34184444 T
66 T
34184445 CATCCGAATA
Statistics
Matches: 211, Mismatches: 14, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
79 13 0.06
80 40 0.19
81 2 0.01
83 156 0.74
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (83 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
TAGTCACTAGCACAAATG
Found at i:34184377 original size:123 final size:120
Alignment explanation
Indices: 34184137--34184444 Score: 388
Period size: 123 Copynumber: 2.5 Consensus size: 120
34184127 AACCCAAGTA
* * *
34184137 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
34184201 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
65 ACACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTA--CGCACAAATG
* * *
34184259 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATACCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA-
* * *
34184324 GAACTACTCGCACAAATGCCTTTGGGACTTCGCCCGGATATAGTC-ACTA-GCACAAATG
64 G-AC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG-CAACTACGCACAAATG
* * *
34184382 CCTTCAGGACTTAGCCCGGATATAGGAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
34184445 CATCCGAATA
Statistics
Matches: 162, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
122 12 0.07
123 107 0.66
124 3 0.02
125 1 0.01
126 38 0.23
127 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGA
CACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTACGCACAAATG
Found at i:34188543 original size:23 final size:23
Alignment explanation
Indices: 34188474--34188550 Score: 100
Period size: 23 Copynumber: 3.3 Consensus size: 23
34188464 GTTTTTATGT
* *
34188474 TGTATTCTGTAATGCCTTTGTGG
1 TGTATTCTGCAATGCTTTTGTGG
** * *
34188497 CATATTTTGCAATGCTTTTATGG
1 TGTATTCTGCAATGCTTTTGTGG
34188520 TGTATTCTGCAATGCTTTTGTGG
1 TGTATTCTGCAATGCTTTTGTGG
34188543 TGTATTCT
1 TGTATTCT
34188551 TGTAACAGCC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.16, C:0.13, G:0.22, T:0.49
Consensus pattern (23 bp):
TGTATTCTGCAATGCTTTTGTGG
Found at i:34204056 original size:30 final size:31
Alignment explanation
Indices: 34204016--34204078 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 31
34204006 TAGTATCGTA
*
34204016 TCTTGGGTTTCTTTA-CTATGGGTTTCTTTAT
1 TCTTGGGTTTCTTTATCT-TGGATTTCTTTAT
34204047 TCTT-GGTTTCTTTATCTTGGATTTCTTTAT
1 TCTTGGGTTTCTTTATCTTGGATTTCTTTAT
34204077 TC
1 TC
34204079 AGTTTTCTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.10, C:0.14, G:0.16, T:0.60
Consensus pattern (31 bp):
TCTTGGGTTTCTTTATCTTGGATTTCTTTAT
Found at i:34204076 original size:15 final size:15
Alignment explanation
Indices: 34204014--34204076 Score: 85
Period size: 15 Copynumber: 4.2 Consensus size: 15
34204004 CATAGTATCG
34204014 TATCTTGGGTTTCTT
1 TATCTTGGGTTTCTT
34204029 TA-CTATGGGTTTCTT
1 TATCT-TGGGTTTCTT
34204044 TATTCTT-GGTTTCTT
1 TA-TCTTGGGTTTCTT
*
34204059 TATCTTGGATTTCTT
1 TATCTTGGGTTTCTT
34204074 TAT
1 TAT
34204077 TCAGTTTTCT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
14 6 0.14
15 34 0.79
16 1 0.02
17 2 0.05
ACGTcount: A:0.11, C:0.13, G:0.16, T:0.60
Consensus pattern (15 bp):
TATCTTGGGTTTCTT
Found at i:34205593 original size:79 final size:79
Alignment explanation
Indices: 34205462--34205616 Score: 283
Period size: 79 Copynumber: 2.0 Consensus size: 79
34205452 AGGGAAAATG
*
34205462 ATAAGAAAATAGGATGAAGTTTAATTTCTGAACCTAGGGGCAAAAGTGCAAATATGCAAAAGTTT
1 ATAAGAAAATAGGATGAAGTTTAATTTCCGAACCTAGGGGCAAAAGTGCAAATATGCAAAAGTTT
34205527 AGGGGTCAAAAAAC
66 AGGGGTCAAAAAAC
* *
34205541 ATAAGAAAATCGGATGAAGTTTAATTTCCGAACCTTGGGGCAAAAGTGCAAATATGCAAAAGTTT
1 ATAAGAAAATAGGATGAAGTTTAATTTCCGAACCTAGGGGCAAAAGTGCAAATATGCAAAAGTTT
34205606 AGGGGTCAAAA
66 AGGGGTCAAAA
34205617 TGAAAATTTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (79 bp):
ATAAGAAAATAGGATGAAGTTTAATTTCCGAACCTAGGGGCAAAAGTGCAAATATGCAAAAGTTT
AGGGGTCAAAAAAC
Found at i:34206367 original size:28 final size:28
Alignment explanation
Indices: 34206335--34206418 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
34206325 AACTGTGATC
34206335 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
34206363 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
*
34206385 GCGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
34206413 ACGTGT
1 ACGTGT
34206419 ACCGGATAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 16
0.62 0.12 0.25
Matches are distributed among these distances:
21 2 0.05
22 7 0.17
23 2 0.05
24 3 0.08
25 6 0.15
26 3 0.08
27 2 0.05
28 13 0.32
29 2 0.05
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:34206463 original size:99 final size:101
Alignment explanation
Indices: 34206279--34206519 Score: 317
Period size: 99 Copynumber: 2.4 Consensus size: 101
34206269 ATCTATTGTG
* * * *
34206279 AGGTCGCATGTGTAGTACTAAGTGTAGGCCACTATGCGTACCTGAAAACTGTGATCACGTGTGTA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGAAAACTGTGATCACGTGTGTA
* **
34206344 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
34206380 AGGTCGCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCATGTGTGTA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGAAAACTGTGATCACGTGTGTA
*
34206443 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
66 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
34206479 -GGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
34206520 AATAGCTTTG
Statistics
Matches: 122, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 36 0.30
99 44 0.36
100 1 0.01
101 41 0.34
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (101 bp):
AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGAAAACTGTGATCACGTGTGTA
GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:34206519 original size:49 final size:49
Alignment explanation
Indices: 34206287--34206511 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
34206277 TGAGGTCGCA
* * * * * * *
34206287 TGTGTAGTACTAAGTGTAGGCCACTATGCGTACCTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * ** *
34206338 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCGCG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
*
34206388 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
34206437 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
34206486 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
34206512 TGCGTACCAA
Statistics
Matches: 153, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
49 78 0.51
50 44 0.29
51 31 0.20
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:34209016 original size:17 final size:17
Alignment explanation
Indices: 34208994--34209049 Score: 103
Period size: 17 Copynumber: 3.3 Consensus size: 17
34208984 TCTCTGACAC
34208994 AGTGCATGGTATGTAAA
1 AGTGCATGGTATGTAAA
34209011 AGTGCATGGTATGTAAA
1 AGTGCATGGTATGTAAA
*
34209028 AGTGCATGGTATGTAAG
1 AGTGCATGGTATGTAAA
34209045 AGTGC
1 AGTGC
34209050 GTAGATACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (17 bp):
AGTGCATGGTATGTAAA
Found at i:34214422 original size:40 final size:40
Alignment explanation
Indices: 34214367--34214550 Score: 244
Period size: 40 Copynumber: 4.5 Consensus size: 40
34214357 TATTCGAATG
*
34214367 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
34214407 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
34214450 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
34214490 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
34214530 ATATCC-AGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
34214551 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 12 0.09
40 77 0.61
41 1 0.01
43 37 0.29
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:34214512 original size:83 final size:83
Alignment explanation
Indices: 34214373--34214525 Score: 279
Period size: 83 Copynumber: 1.8 Consensus size: 83
34214363 AATGATATCT
* *
34214373 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTG
34214438 CGAGTAGTTGCTATACCC
66 CGAGTAGTTGCTATACCC
*
34214456 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTG
34214521 CGAGT
66 CGAGT
34214526 TGCTATATCC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 67 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (83 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTG
CGAGTAGTTGCTATACCC
Found at i:34218768 original size:16 final size:16
Alignment explanation
Indices: 34218744--34218776 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
34218734 AAAGTTAATC
*
34218744 AAAATTTATTTCATAA
1 AAAAATTATTTCATAA
34218760 AAAAATTATTTCATAA
1 AAAAATTATTTCATAA
34218776 A
1 A
34218777 CTAATACAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAAATTATTTCATAA
Found at i:34226833 original size:46 final size:46
Alignment explanation
Indices: 34226783--34226911 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
34226773 TGGTTGAGCA
*
34226783 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
34226829 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
34226875 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34226912 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:34233864 original size:30 final size:30
Alignment explanation
Indices: 34233828--34233888 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
34233818 TTCCTGAGCC
* *
34233828 TAGGGGCACAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
34233858 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
34233888 T
1 T
34233889 GTATTAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:34234361 original size:46 final size:46
Alignment explanation
Indices: 34234311--34234485 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
34234301 GGTTGAGCAT
*
34234311 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATGC
* * * *
34234357 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--ATGC
* *
34234402 ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATGC
*
34234450 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34234486 GCGAGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
45 5 0.05
46 62 0.57
47 27 0.25
48 5 0.05
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATGC
Found at i:34234466 original size:93 final size:93
Alignment explanation
Indices: 34234307--34234477 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
34234297 GGATGGTTGA
*
34234307 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
34234372 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
** *
34234400 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
34234465 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
34234478 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:34243123 original size:56 final size:56
Alignment explanation
Indices: 34243063--34243199 Score: 186
Period size: 56 Copynumber: 2.4 Consensus size: 56
34243053 TCCCAGACAG
* *
34243063 GGTCTTACTCGCACACATTTATC-AGAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGA-AGTCACATATCGATGCCAACGTATAAAACAT
* *
34243119 GGTCTTACTCGCACGCATATATCGAAGTCACATATTGATGCCAACGTATAAAACAT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
* * * *
34243175 GGTCTTATTCGTAAAAATATATCGA
1 GGTCTTACTCGCACACATATATCGA
34243200 TGCCATGGTT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
56 70 0.99
57 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
Found at i:34244123 original size:11 final size:10
Alignment explanation
Indices: 34244107--34244157 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
34244097 TTATATGTTT
34244107 TATTATATACA
1 TATTAT-TACA
34244118 TATTATTACA
1 TATTATTACA
*
34244128 TAAT-TTACA
1 TATTATTACA
*
34244137 TATTATTACC
1 TATTATTACA
34244147 T-TT-TTACA
1 TATTATTACA
34244155 TAT
1 TAT
34244158 AATAATAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
8 5 0.15
9 11 0.32
10 12 0.35
11 6 0.18
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (10 bp):
TATTATTACA
Found at i:34246940 original size:79 final size:79
Alignment explanation
Indices: 34246841--34247060 Score: 205
Period size: 79 Copynumber: 2.8 Consensus size: 79
34246831 CTCGTTCAAG
* * ** * *
34246841 TGCCTTCGGGACATAGCCCGGTCATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACATAACCCGG-AATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-AT
*
34246905 TAA-AACTCGCACGAA
64 TAATAACTCGCACAAA
* * * *
34246920 TGCCTTCGGGACTTAACCCGGAATTGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATTA
1 TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
34246985 ATAACTCGCACAAA
66 ATAACTCGCACAAA
* * ** * * *
34246999 TACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGA-ATAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
34247061 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
78 16 0.14
79 68 0.59
80 26 0.22
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
ATAACTCGCACAAA
Found at i:34247020 original size:40 final size:40
Alignment explanation
Indices: 34246878--34247060 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
34246868 TAACTCATTC
* *
34246878 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
34246918 AATGCCTTCGGGACTTAACCCGGAATT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
34246957 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
34246997 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
34247038 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34247061 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 41 0.34
40 68 0.57
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:34248084 original size:13 final size:13
Alignment explanation
Indices: 34248066--34248090 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34248056 AGGATGAGCA
34248066 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
34248079 TTTTTTTTCTTT
1 TTTTTTTTCTTT
34248091 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:34256260 original size:22 final size:21
Alignment explanation
Indices: 34256235--34256280 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
34256225 CAAATATTTC
* *
34256235 ATAATTTACTATAATAACCTTT
1 ATAAATTAATATAA-AACCTTT
*
34256257 ATAAATTAATATAAAATCTTT
1 ATAAATTAATATAAAACCTTT
34256278 ATA
1 ATA
34256281 TTGGCTATCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (21 bp):
ATAAATTAATATAAAACCTTT
Found at i:34258780 original size:50 final size:50
Alignment explanation
Indices: 34258721--34258822 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
34258711 GAATAAAAGA
34258721 AATAGGGAAGGATTCAAAAGAGAGAAGGGATATTCGACTAACACAGAAGC
1 AATAGGGAAGGATTCAAAAGAGAGAAGGGATATTCGACTAACACAGAAGC
34258771 AATAGGGAAGGATTCAAAAGAGAGAAGGGATATTCGACTAACACAGAAGC
1 AATAGGGAAGGATTCAAAAGAGAGAAGGGATATTCGACTAACACAGAAGC
34258821 AA
1 AA
34258823 CCCAAATGAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.47, C:0.12, G:0.27, T:0.14
Consensus pattern (50 bp):
AATAGGGAAGGATTCAAAAGAGAGAAGGGATATTCGACTAACACAGAAGC
Found at i:34260615 original size:19 final size:20
Alignment explanation
Indices: 34260572--34260615 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
34260562 TATAAAGTAA
* *
34260572 GTTTGAGATAGGTATTATGT
1 GTTTGAGAAAGGTATAATGT
*
34260592 TTTTGAGAAAGGT-TAATGT
1 GTTTGAGAAAGGTATAATGT
34260611 GTTTG
1 GTTTG
34260616 GGTTCAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (20 bp):
GTTTGAGAAAGGTATAATGT
Found at i:34261901 original size:45 final size:45
Alignment explanation
Indices: 34261851--34262023 Score: 242
Period size: 45 Copynumber: 3.9 Consensus size: 45
34261841 TGTACAGTAC
*
34261851 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* *
34261896 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATACCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* *
34261941 TATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*** * *
34261986 TATTCAAACC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
34262024 TTGAATTCGA
Statistics
Matches: 116, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 10 0.09
44 15 0.13
45 91 0.78
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:34268599 original size:19 final size:20
Alignment explanation
Indices: 34268556--34268599 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
34268546 TATAAAGTAA
* *
34268556 GTTTGAGATAGGTATTATGT
1 GTTTGAGAAAGGTATAATGT
*
34268576 TTTTGAGAAAGGT-TAATGT
1 GTTTGAGAAAGGTATAATGT
34268595 GTTTG
1 GTTTG
34268600 GGTTGAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (20 bp):
GTTTGAGAAAGGTATAATGT
Found at i:34269915 original size:44 final size:45
Alignment explanation
Indices: 34269840--34269966 Score: 197
Period size: 44 Copynumber: 2.9 Consensus size: 45
34269830 TGTACAGTAC
*
34269840 TATTCGAGCCTTCGAGCCTAGCAGGCGATAATGCCGGTGAGATAT
1 TATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGTGAGATAT
* *
34269885 TATTCGGGCCTTTGA-CCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGTGAGATAT
*
34269929 TATTCGGGCC-TCGAGCCTAGCAGGCGA-AATACCGGTGA
1 TATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGTGA
34269967 ATGAATTCGG
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 13 0.17
44 49 0.65
45 13 0.17
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGTGAGATAT
Found at i:34271359 original size:25 final size:27
Alignment explanation
Indices: 34271322--34271375 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
34271312 TCAAACATGC
34271322 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
34271348 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
34271374 AT
1 AT
34271376 AACAATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:34272890 original size:26 final size:26
Alignment explanation
Indices: 34272859--34272966 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
34272849 TGAAATGCCC
*
34272859 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
34272885 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
34272911 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
34272937 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
34272963 ATCA
1 ATCA
34272967 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:34283785 original size:25 final size:25
Alignment explanation
Indices: 34283755--34283804 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
34283745 GGAACACAAA
34283755 GTCTATTTCTAAACCTCAGACAGTC
1 GTCTATTTCTAAACCTCAGACAGTC
*
34283780 GTCTATTTCTGAACCTCAGACAGTC
1 GTCTATTTCTAAACCTCAGACAGTC
34283805 TCCTTCATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (25 bp):
GTCTATTTCTAAACCTCAGACAGTC
Found at i:34296949 original size:41 final size:40
Alignment explanation
Indices: 34296818--34297010 Score: 219
Period size: 40 Copynumber: 4.8 Consensus size: 40
34296808 GGATATAGGT
* * * * *
34296818 ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATGTAATA
*
34296857 ACTCACACAAATGCCTTC-GAGACTTAGCCCGGATGTAATA
1 ACTCGCACAAATGCCTTCAG-GACTTAGCCCGGATGTAATA
* *
34296897 ACTTGCCCAAATGCCTTCAGGACTTAGCCCGGAATGTAATA
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGG-ATGTAATA
* ** * *
34296938 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATGTAATA
*
34296978 ACTAGCACAAAATGCCTTCAGGACTTAGCCCGG
1 ACTCGCAC-AAATGCCTTCAGGACTTAGCCCGG
34297011 TTATCATCCA
Statistics
Matches: 132, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 7 0.05
40 64 0.48
41 61 0.46
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCAGGACTTAGCCCGGATGTAATA
Found at i:34296962 original size:81 final size:81
Alignment explanation
Indices: 34296826--34297010 Score: 246
Period size: 81 Copynumber: 2.3 Consensus size: 81
34296816 GTACTCGCTC
* * * *
34296826 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGAGACTTAGCCCGGAT
1 AATGCCTTCAGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGAGACTTAGCCCGGAA
* * *
34296891 GTAATAACTTGC-CCA
66 CTAATAACTAGCACAA
* * *
34296906 AATGCCTTCAGGACTTAGCCCGGAATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCAGGACTTAGCCCGG-ATATAATAACTCACACAAATGCCTTCGAGACTTAGCCCGGA
* *
34296971 ACTAGTCACTAGCACAA
65 ACTAATAACTAGCACAA
34296988 AATGCCTTCAGGACTTAGCCCGG
1 AATGCCTTCAGGACTTAGCCCGG
34297011 TTATCATCCA
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 21 0.23
81 45 0.49
82 25 0.27
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (81 bp):
AATGCCTTCAGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGAGACTTAGCCCGGAA
CTAATAACTAGCACAA
Found at i:34301665 original size:21 final size:21
Alignment explanation
Indices: 34301641--34301686 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
34301631 AAATCTGGGT
* *
34301641 ATTCACAAACCGCCGGTACAG
1 ATTCACAAACCACCGGCACAG
34301662 ATTCACAAACCACCGGCACAG
1 ATTCACAAACCACCGGCACAG
34301683 ATTC
1 ATTC
34301687 GGGTTTCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.15, T:0.15
Consensus pattern (21 bp):
ATTCACAAACCACCGGCACAG
Found at i:34305025 original size:40 final size:40
Alignment explanation
Indices: 34304976--34305160 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
34304966 CTACTCGCTC
* *
34304976 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACA
* *
34305016 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACA
* *
34305056 AAAGCCTTCGGGACTTAGCCCGGAATGTAATAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGG-ATATAATAACTCACACA
* * *
34305097 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCAA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAATAACTCA-CAC-A
*
34305138 AATGCCTTCGGGACTTTGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
34305161 TTATCATCGA
Statistics
Matches: 129, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 67 0.52
41 61 0.47
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACA
Found at i:34305105 original size:81 final size:81
Alignment explanation
Indices: 34304976--34305160 Score: 264
Period size: 81 Copynumber: 2.3 Consensus size: 81
34304966 CTACTCGCTC
* * *
34304976 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCGGAA
* *
34305041 GTAATAACTCGCACAA
66 CTAATAACTAGCACAA
*
34305057 AA-GCCTTCGGGACTTAGCCCGGAATGTAATAACTCACACAAATGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGG-ATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCGGA
* * *
34305121 ACTAGTCACTAGCGCAA
65 ACTAATAACTAGCACAA
*
34305138 AATGCCTTCGGGACTTTGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
34305161 TTATCATCGA
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
80 19 0.21
81 54 0.59
82 19 0.21
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCGGAA
CTAATAACTAGCACAA
Found at i:34307765 original size:27 final size:27
Alignment explanation
Indices: 34307728--34307798 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
34307718 AGCATAGTTG
*
34307728 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGTAACAGTAAATGTGGCAAAGCCA
* * * * *
34307755 CCTGTATCAGTAATTGAGGCATAGCCA
1 CCAGTAACAGTAAATGTGGCAAAGCCA
*
34307782 CCAGTAACAGTGAATGT
1 CCAGTAACAGTAAATGT
34307799 CATATAGTCA
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTAAATGTGGCAAAGCCA
Found at i:34307985 original size:27 final size:27
Alignment explanation
Indices: 34307955--34308045 Score: 119
Period size: 27 Copynumber: 3.4 Consensus size: 27
34307945 GGGCATAATT
*
34307955 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACCATACAGGGGTATTACG
* *
34307982 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* * * *
34308009 GTCAATTTACCTTATAGGGGTATTATG
1 GTCATTTTACCATACAGGGGTATTACG
34308036 GTCATTTTAC
1 GTCATTTTAC
34308046 TTTTTTGGGG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:34310782 original size:17 final size:18
Alignment explanation
Indices: 34310757--34310797 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
34310747 CAAAATCTGA
*
34310757 CTACCGTTTTCAGTCTT-
1 CTACAGTTTTCAGTCTTC
*
34310774 CTACAG-TTTCAGTTTTC
1 CTACAGTTTTCAGTCTTC
34310791 CTACAGT
1 CTACAGT
34310798 CACAGTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.17, C:0.27, G:0.12, T:0.44
Consensus pattern (18 bp):
CTACAGTTTTCAGTCTTC
Found at i:34310785 original size:16 final size:17
Alignment explanation
Indices: 34310764--34310797 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
34310754 TGACTACCGT
34310764 TTTCAGTCTT-CTACAG
1 TTTCAGTCTTCCTACAG
*
34310780 TTTCAGTTTTCCTACAG
1 TTTCAGTCTTCCTACAG
34310797 T
1 T
34310798 CACAGTTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.18, C:0.24, G:0.12, T:0.47
Consensus pattern (17 bp):
TTTCAGTCTTCCTACAG
Found at i:34315407 original size:18 final size:18
Alignment explanation
Indices: 34315376--34315426 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
34315366 TTATCGTTTG
* *
34315376 AATGCTTAATTTGTGAAA
1 AATGCTAAAGTTGTGAAA
*
34315394 AATGACTAAA-TTGTGTAA
1 AATG-CTAAAGTTGTGAAA
*
34315412 AGTGCTAAAGTTGTG
1 AATGCTAAAGTTGTG
34315427 TTCTATTAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 5 0.18
18 19 0.68
19 4 0.14
ACGTcount: A:0.37, C:0.06, G:0.22, T:0.35
Consensus pattern (18 bp):
AATGCTAAAGTTGTGAAA
Found at i:34324980 original size:46 final size:45
Alignment explanation
Indices: 34324928--34325094 Score: 130
Period size: 46 Copynumber: 3.6 Consensus size: 45
34324918 TGTGTGAACT
34324928 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTA-GAGAGCC
* *
34324974 AGTGTAAGACCATGT-TAGGG-CATGGCATC-G--GCATTGAGATGAGTTCT
1 AGTGTAAGA-CATGTCT-GGGACAT-GCATCAGCCACATT-AGA-GAG--CC
* * ***
34325021 AATGTAAGACATGTCTGGGACATGCATCAGCCTCGGGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTA-G-AGAGCC
*
34325067 AGTATAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
34325095 GGCTACGAGA
Statistics
Matches: 97, Mismatches: 10, Indels: 28
0.72 0.07 0.21
Matches are distributed among these distances:
44 6 0.06
45 4 0.04
46 54 0.56
47 27 0.28
48 3 0.03
49 2 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTAGAGAGCC
Found at i:34330274 original size:43 final size:41
Alignment explanation
Indices: 34330213--34330381 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 41
34330203 TAGGATTTCT
*
34330213 GATATGTGATCTCGTGTAACACTACATCTGGGACATTGGCATC
1 GATATGTGAT-TCGTGTAAGAC-ACATCTGGGACATTGGCATC
*
34330256 GATATGTGATTACGTGTAAGAC-CAGGTCTGGGGCATTGGCATC
1 GATATGTGATT-CGTGTAAGACACA--TCTGGGACATTGGCATC
* * * * *
34330299 G-TATTTGGA-TCGTGTAAGACCCTATCTGGGATAGTGGCATT
1 GATATGT-GATTCGTGTAAGACAC-ATCTGGGACATTGGCATC
* * * *
34330340 GATATGTGATTACATGTAAGAACACGTCTGAGACGTTGGCAT
1 GATATGTGATT-CGTGTAAG-ACACATCTGGGACATTGGCAT
34330382 TGTACGATAT
Statistics
Matches: 101, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
41 28 0.28
42 12 0.12
43 58 0.57
44 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (41 bp):
GATATGTGATTCGTGTAAGACACATCTGGGACATTGGCATC
Found at i:34330327 original size:41 final size:43
Alignment explanation
Indices: 34330213--34330360 Score: 142
Period size: 43 Copynumber: 3.5 Consensus size: 43
34330203 TAGGATTTCT
* * *
34330213 GATATGTGATCT-CGTGTAACACTACATCTGGGACATTGGCATC
1 GATATGTGAT-TACGTGTAAGACCAGATCTGGGACATTGGCATC
* *
34330256 GATATGTGATTACGTGTAAGACCAGGTCTGGGGCATTGGCATC
1 GATATGTGATTACGTGTAAGACCAGATCTGGGACATTGGCATC
* ** * * *
34330299 G-TATTTGGA-T-CGTGTAAGACCCTATCTGGGATAGTGGCATT
1 GATATGT-GATTACGTGTAAGACCAGATCTGGGACATTGGCATC
*
34330340 GATATGTGATTACATGTAAGA
1 GATATGTGATTACGTGTAAGA
34330361 ACACGTCTGA
Statistics
Matches: 85, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 27 0.32
42 11 0.13
43 47 0.55
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCAGATCTGGGACATTGGCATC
Found at i:34337413 original size:417 final size:416
Alignment explanation
Indices: 34336595--34337426 Score: 1520
Period size: 417 Copynumber: 2.0 Consensus size: 416
34336585 ATAAATATAG
*
34336595 TTTACCAAAATCTTTATTATAATCAATTTAATTATAATTTTCGGTAAAACATTATTATATTTATT
1 TTTACCAAAATCTTTATTATAATCAATGTAATTATAATTTTCGGTAAAACATTATTATATTTATT
* *
34336660 TATTTTAATTATGATTATTATGTTCGGATTAAAATTTAATAAATTAAGAATTTGTTATATACATA
66 TATTTTAATTATGATTATTATGTTCAGATTAAAATTTAATAAATTAAGAATTCGTTATATACATA
34336725 CCAACTATAAGGGCAGTTATATATAGAAAGGGAGGAAAACCCTAAAAAGGGAATATATATACAAA
131 CCAACTATAAGGGCAGTTATATATAGAAAGGGAGGAAAACCCTAAAAAGGGAATATATATACAAA
34336790 CCCGAAGCTTTCCTACTAGGTCTGGCAGCCGTCAAGAAAAATATCTCTGAAAATAGTTTTGGGGA
196 CCCGAAGCTTTCCTACTAGGTCTGGCAGCCGTCAAGAAAAATATCTCTGAAAATAGTTTTGGGGA
*
34336855 TTTCTTTCGTTCATTATCAACTAGATGGATTACGAAGAGGTTGGGATCATAAAGATTGCGGCTTG
261 TTTCTTTCGTTCATTATCAACTAGATGGATTACGAAGAGGTCGGGATCATAAAGATTGCGGCTTG
*
34336920 GATTCGAAAGCAAAACAGTATTCTCATTGCCGAGGCTTCATTGTCTATTTAGATTGAAGTTTGGG
326 GATTCGAAAGCAAAACAGTATTCTCATTGCCGAGGCTTCATTGTCTATTCAGATTGAAGTTTGGG
34336985 TAATTTTGAAACCTTTTTCACCCCAT
391 TAATTTTGAAACCTTTTTCACCCCAT
*
34337011 TTTACCAAAATCTTTATTATAATTAATGTAATTATAATTTTCGGTTAAAACATTATTATATTTAT
1 TTTACCAAAATCTTTATTATAATCAATGTAATTATAATTTTCGG-TAAAACATTATTATATTTAT
34337076 TTATTTTAATTATGATTATTATGTTCAGATTAAAATTTAATAAATTAAGAATTCGTTATATACAT
65 TTATTTTAATTATGATTATTATGTTCAGATTAAAATTTAATAAATTAAGAATTCGTTATATACAT
34337141 ACCAACTATAAGGGCAGTTATATATAGAAAGGGAGGAAAACCCTAAAAAGGGAATATATATACAA
130 ACCAACTATAAGGGCAGTTATATATAGAAAGGGAGGAAAACCCTAAAAAGGGAATATATATACAA
* * * *
34337206 ACCCGAAGCTTTGCTACTAGGTCTGGTAGCTGTCAAGCAAAATATCTCTGAAAATAGTTTTGGGG
195 ACCCGAAGCTTTCCTACTAGGTCTGGCAGCCGTCAAGAAAAATATCTCTGAAAATAGTTTTGGGG
* * * *
34337271 ATTTCTTTCGTTCATTGTCAACTGGGTGGATTACGTAGAGGTCGGGATCATAAAGATTGCGGCTT
260 ATTTCTTTCGTTCATTATCAACTAGATGGATTACGAAGAGGTCGGGATCATAAAGATTGCGGCTT
*
34337336 GGATTTGAAAGCAAAACAGTATTCTCATTGCCGAGGCTTCATTGTCTATTCAGATTGAAGTTTGG
325 GGATTCGAAAGCAAAACAGTATTCTCATTGCCGAGGCTTCATTGTCTATTCAGATTGAAGTTTGG
34337401 GTAATTTTGAAACCTTTTTCACCCCA
390 GTAATTTTGAAACCTTTTTCACCCCA
34337427 GTTCGTTCCT
Statistics
Matches: 400, Mismatches: 15, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
416 42 0.10
417 358 0.89
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (416 bp):
TTTACCAAAATCTTTATTATAATCAATGTAATTATAATTTTCGGTAAAACATTATTATATTTATT
TATTTTAATTATGATTATTATGTTCAGATTAAAATTTAATAAATTAAGAATTCGTTATATACATA
CCAACTATAAGGGCAGTTATATATAGAAAGGGAGGAAAACCCTAAAAAGGGAATATATATACAAA
CCCGAAGCTTTCCTACTAGGTCTGGCAGCCGTCAAGAAAAATATCTCTGAAAATAGTTTTGGGGA
TTTCTTTCGTTCATTATCAACTAGATGGATTACGAAGAGGTCGGGATCATAAAGATTGCGGCTTG
GATTCGAAAGCAAAACAGTATTCTCATTGCCGAGGCTTCATTGTCTATTCAGATTGAAGTTTGGG
TAATTTTGAAACCTTTTTCACCCCAT
Found at i:34354550 original size:79 final size:81
Alignment explanation
Indices: 34354441--34354623 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
34354431 TACTCGTTCA
* *
34354441 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
34354504 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
34354521 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
34354584 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
34354600 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
34354624 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:34354623 original size:40 final size:40
Alignment explanation
Indices: 34354420--34354623 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
34354410 CGGAATTTAA
** *
34354420 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
34354460 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
34354500 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
34354539 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
34354579 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
34354619 CCGGA
1 CCGGA
34354624 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:34362720 original size:79 final size:80
Alignment explanation
Indices: 34362622--34362804 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
34362612 TACTCGTTCA
* *
34362622 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCG-GATCTTAACCCGG
* *
34362685 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
34362702 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
34362766 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
34362781 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
34362805 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 2 0.02
79 60 0.67
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:34362804 original size:40 final size:40
Alignment explanation
Indices: 34362620--34362804 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
34362610 GCTACTCGTT
* *
34362620 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
34362660 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
34362700 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
34362739 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
34362780 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34362805 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:34367942 original size:41 final size:41
Alignment explanation
Indices: 34367888--34368015 Score: 132
Period size: 41 Copynumber: 3.0 Consensus size: 41
34367878 GGATTTTTTA
* * *
34367888 TATGTGGTCTCGTGTAAGACCACATCTGGGACATTGGCATTG
1 TATGTGAT-TCGTGTAAGACCACGTCTGGGATATTGGCATTG
* * * *
34367930 TATTTGATTCGTGTAAGACC-CTGTCTAGGATAGTGGCATCG
1 TATGTGATTCGTGTAAGACCAC-GTCTGGGATATTGGCATTG
* *
34367971 ATATGTGATTGCATGTAAGACCACGTCTGGGATGTTGGCATTG
1 -TATGTGATT-CGTGTAAGACCACGTCTGGGATATTGGCATTG
34368014 TA
1 TA
34368016 CGTTATGCGT
Statistics
Matches: 69, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
40 1 0.01
41 26 0.38
42 16 0.23
43 25 0.36
44 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (41 bp):
TATGTGATTCGTGTAAGACCACGTCTGGGATATTGGCATTG
Found at i:34368010 original size:43 final size:41
Alignment explanation
Indices: 34367900--34368011 Score: 111
Period size: 43 Copynumber: 2.7 Consensus size: 41
34367890 TGTGGTCTCG
* ** * * *
34367900 TGTAAGACCACATCTGGGACATTGGCATTGTATTTGATTCG
1 TGTAAGACCACGTCTGGGATGTTGGCATCGTATGTGATTCA
*
34367941 TGTAAGACC-CTGTCTAGGATAG-TGGCATCGATATGTGATTGCA
1 TGTAAGACCAC-GTCTGGGAT-GTTGGCATCG-TATGTGATT-CA
34367984 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGATGTTGGCAT
34368012 TGTACGTTAT
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
40 1 0.02
41 22 0.39
42 9 0.16
43 24 0.42
44 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCGTATGTGATTCA
Found at i:34391301 original size:46 final size:46
Alignment explanation
Indices: 34391251--34391426 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
34391241 TGGTTGAGCA
34391251 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34391297 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
34391342 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
34391390 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34391427 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34391407 original size:93 final size:93
Alignment explanation
Indices: 34391248--34391418 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
34391238 GGATGGTTGA
* *
34391248 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34391313 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
34391341 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34391406 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
34391419 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34398868 original size:46 final size:46
Alignment explanation
Indices: 34398818--34398993 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
34398808 TGGTTGAGCA
34398818 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34398864 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
34398909 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34398957 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34398994 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34398974 original size:93 final size:93
Alignment explanation
Indices: 34398815--34398986 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
34398805 GGATGGTTGA
* *
34398815 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34398880 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
34398908 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34398973 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
34398987 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34401680 original size:27 final size:27
Alignment explanation
Indices: 34401334--34401673 Score: 346
Period size: 27 Copynumber: 12.6 Consensus size: 27
34401324 TTAGTTTACC
** * *
34401334 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
34401361 AAATTACCAAAGTACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
34401388 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** **
34401415 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **
34401442 AAATTACTAAAATACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
**
34401469 AAATTACCAAAATACCCTCGATCAGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
34401496 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
34401522 AAATTGCTAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
34401549 AAATTA-CAGAAATACCCTCAATTTGTA
1 AAATTACCA-AAATACCCTCGATTTGTA
*
34401576 AAATTACCAAAATACCCCTAGA-TTGTA
1 AAATTACCAAAATA-CCCTCGATTTGTA
* *
34401603 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCGATTTGTA
* *
34401630 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
34401657 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
34401674 CTGATTTACA
Statistics
Matches: 265, Mismatches: 41, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
26 27 0.10
27 231 0.87
28 7 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:34401745 original size:27 final size:27
Alignment explanation
Indices: 34401712--34401763 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
34401702 TGACTTTCTA
34401712 AAAATTA-TGGAAATACCATTGGTTTAC
1 AAAATTACT-GAAATACCATTGGTTTAC
*
34401739 AAAATTACTGAAATACCTTTGGTTT
1 AAAATTACTGAAATACCATTGGTTT
34401764 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:34401881 original size:27 final size:27
Alignment explanation
Indices: 34401794--34401881 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
34401784 TTATAGGATG
* * *
34401794 AAATGACTAAAATACCCCTAT-TAGGTA
1 AAATGACCATAATACCCCTGTAT-GGTA
* *
34401821 AAAAGACCATAA-AGCCCCTGTAGGGTA
1 AAATGACCATAATA-CCCCTGTATGGTA
* *
34401848 AAGTGACCGTAATACCCCTGTATGGTA
1 AAATGACCATAATACCCCTGTATGGTA
34401875 AAATGAC
1 AAATGAC
34401882 GAATATGCCC
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
26 1 0.02
27 46 0.96
28 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (27 bp):
AAATGACCATAATACCCCTGTATGGTA
Found at i:34403419 original size:40 final size:40
Alignment explanation
Indices: 34403360--34403504 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
34403350 CTCACACAAG
* * * * *
34403360 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
34403400 GCCTTTGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
34403440 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
34403481 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
34403505 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:34416764 original size:16 final size:16
Alignment explanation
Indices: 34416743--34416774 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
34416733 CGAACCATCG
34416743 TCTGACACTGTCAACT
1 TCTGACACTGTCAACT
34416759 TCTGACACTGTCAACT
1 TCTGACACTGTCAACT
34416775 GAGTATTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.31
Consensus pattern (16 bp):
TCTGACACTGTCAACT
Found at i:34419770 original size:40 final size:40
Alignment explanation
Indices: 34419715--34419939 Score: 341
Period size: 40 Copynumber: 5.7 Consensus size: 40
34419705 TATTCAAATG
* * *
34419715 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
34419755 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
34419795 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTATTGA-T
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
*
34419833 ATATCC-GGCTAAGT-CCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* * *
34419871 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCAATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* *
34419911 ATATCCGGGCTAAGACCCGAAGGTATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
34419940 CGCGAGTTGC
Statistics
Matches: 171, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
37 21 0.12
38 22 0.13
39 39 0.23
40 89 0.52
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
Found at i:34419917 original size:116 final size:119
Alignment explanation
Indices: 34419715--34419972 Score: 378
Period size: 116 Copynumber: 2.2 Consensus size: 119
34419705 TATTCAAATG
*
34419715 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCC-GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
* * * * *
34419780 TTTGTGCTATTGATTATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTA-TTGAT
65 TTTGTGCAATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTGAT
* *
34419833 ATATCCGGCTAAGT-CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATATCCGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCAT
* *
34419897 TTGTGCAATTGACTATATCCGGGCTAAGACCCGAAGGTATTTGCGCGAGTTGCT
66 TTGTGCAATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTGAT
* *
34419951 ATATCCAGCTAAATCCCGAAGG
1 ATATCCGGCTAAGTCCCGAAGG
34419973 TACTTGGGCT
Statistics
Matches: 125, Mismatches: 12, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
116 66 0.53
117 30 0.24
118 22 0.18
119 7 0.06
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (119 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCAATTGACTATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTGAT
Found at i:34419974 original size:39 final size:40
Alignment explanation
Indices: 34419715--34419972 Score: 330
Period size: 40 Copynumber: 6.6 Consensus size: 40
34419705 TATTCAAATG
* * * *
34419715 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
34419755 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
34419795 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTATTGA-T
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
34419833 ATATCC-GGCTAAGT-CCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
34419871 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCAATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * * *
34419911 ATATCCGGGCTAAGACCCGAAGGTATTTGCGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
34419951 ATATCC-AGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
34419973 TACTTGGGCT
Statistics
Matches: 198, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
37 21 0.11
38 22 0.11
39 52 0.26
40 100 0.51
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:34428269 original size:48 final size:48
Alignment explanation
Indices: 34428191--34428463 Score: 429
Period size: 48 Copynumber: 5.6 Consensus size: 48
34428181 AACCCGTATA
* *
34428191 TATATGTGTGATAAGGCTGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTG-G-TAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* * * *
34428241 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
34428289 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* * * *
34428337 TATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
34428385 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
*
34428433 TATATGTGGTAAAGCCGAATGGCCAATGTGA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGA
34428464 TAAATGTGAG
Statistics
Matches: 204, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
48 195 0.96
49 1 0.00
50 8 0.04
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
Found at i:34428321 original size:96 final size:96
Alignment explanation
Indices: 34428191--34428509 Score: 502
Period size: 96 Copynumber: 3.3 Consensus size: 96
34428181 AACCCGTATA
* *
34428191 TATATGTGTGATAAGGCTGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGC
1 TATATGTG-G-TAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGC
*
34428256 CGAATGGCGAATGTGAAATATGTATGAGATATG
64 CGAATGGCCAATGTGAAATATGTATGAGATATG
34428289 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
34428354 AATGGCCAATGTGAAATATGTATGAGATATG
66 AATGGCCAATGTGAAATATGTATGAGATATG
34428385 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
*
34428450 AATGGCCAATGTGATAA-ATG--TGAG-CATG
66 AATGGCCAATGTGA-AATATGTATGAGATATG
* * *
34428478 CATATATGTGATAAGGCCGAATGGCCAATGTG
1 --TATATGTGGTAAAGCCGAATGGCTAATGTG
34428510 GTGAATATGA
Statistics
Matches: 211, Mismatches: 7, Indels: 9
0.93 0.03 0.04
Matches are distributed among these distances:
93 3 0.01
94 4 0.02
95 27 0.13
96 166 0.79
97 3 0.01
98 8 0.04
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.31
Consensus pattern (96 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
AATGGCCAATGTGAAATATGTATGAGATATG
Found at i:34428370 original size:144 final size:142
Alignment explanation
Indices: 34428141--34428562 Score: 460
Period size: 144 Copynumber: 2.9 Consensus size: 142
34428131 GTGAACATGC
* * * * *
34428141 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTAT-ATATATGTGTGATAA
1 GTATATGTGGTAAAGCCGAATGGCCAATGTGATAAATGTG-A---GCATGATATATGTG-G-TAA
* * * *
34428205 GGCTGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGT
60 GGCCGAATGGCCAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGT
*
34428270 GAAATATGTATGAGATAT
125 GAAATATATATGAGATAT
* * * * *
34428288 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG-TATATGTGGTAAAGC
1 GTATATGTGGTAAAGCCGAATGGCCAATGTG--ATAAATGTGAG-CATGATATATGTGGTAAGGC
* *
34428352 CGAATGGCCAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
63 CGAATGGCCAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
* *
34428417 ATATATGTGTGATAT
128 ATATATATGAGATAT
*
34428432 GTATATGTGGTAAAGCCGAATGGCCAATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCG
1 GTATATGTGGTAAAGCCGAATGGCCAATGTGATAAATGTGAGCATG-ATATATGTGGTAAGGCCG
* * * * *
34428497 AATGGCCAATGTG--GTGA-ATATGA-AAATGCATATATGCGGTAAAGCCGAATGGCTAGTGTGA
65 AATGGCCAATGTGAAAT-ATATATGAGATATG--TATATGTGGTAAAGCCGAATGGCGAATGTGA
34428558 AATAT
127 AATAT
34428563 GTAGGCGATG
Statistics
Matches: 238, Mismatches: 28, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
140 4 0.02
141 9 0.04
142 44 0.18
143 28 0.12
144 106 0.45
145 2 0.01
146 11 0.05
147 27 0.11
149 7 0.03
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (142 bp):
GTATATGTGGTAAAGCCGAATGGCCAATGTGATAAATGTGAGCATGATATATGTGGTAAGGCCGA
ATGGCCAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATA
TATATGAGATAT
Found at i:34428762 original size:37 final size:37
Alignment explanation
Indices: 34428712--34428857 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
34428702 GGAAATATAT
*
34428712 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
34428749 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
34428786 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* ** * *
34428823 TCTGGGTAAGACCCGACAACTTCGTGCGGAGATTA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTA
34428858 CATCCGAGCT
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:34432399 original size:40 final size:40
Alignment explanation
Indices: 34432344--34432604 Score: 375
Period size: 40 Copynumber: 6.6 Consensus size: 40
34432334 TATTCAAATG
* *
34432344 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
34432384 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
34432424 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
34432464 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
34432504 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
34432544 ATATCCGGGCTAAGACCC-AAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
34432583 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
34432605 TACTTGGGTT
Statistics
Matches: 202, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
38 9 0.04
39 25 0.12
40 168 0.83
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:34448197 original size:42 final size:43
Alignment explanation
Indices: 34448070--34448241 Score: 165
Period size: 43 Copynumber: 4.0 Consensus size: 43
34448060 ACATAGGATC
* * ***
34448070 CGATATGTG-TTATCGTGTAAGACCACATCTACAACGTTGGCAT
1 CGATATTTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
* **
34448113 CGACT-TATGATTTACGTGTAAGACCACGTCTAAGACGTTGGCAT
1 CGA-TATTTGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* *
34448157 C-ATATTTTATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATTTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
*
34448199 CGATATTTGATTACTTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
34448242 TGTACGAGCT
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
41 1 0.01
42 29 0.27
43 45 0.42
44 30 0.28
45 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:34453345 original size:47 final size:46
Alignment explanation
Indices: 34453149--34453414 Score: 229
Period size: 47 Copynumber: 5.7 Consensus size: 46
34453139 ATAAATTGTT
* * *
34453149 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATACGTGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTAT--GTGCC
* * * *
34453199 GATGCATGTCCCGGACATGTCTTACACTAGCAC-AACTCT-T-AGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCA-TCTATGTGCC
* * * * *
34453243 GATGCGTGTCCCAAACACGTCTTACAATGGCTA-TC-TCTATCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCTAT-G-TGCC
* **
34453290 GATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTATGTGTT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTATGTGCC
* *
34453336 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTATGT-GCC
*
34453384 GAAGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
34453415 GCACAAATCA
Statistics
Matches: 175, Mismatches: 29, Indels: 28
0.75 0.12 0.12
Matches are distributed among these distances:
43 3 0.02
44 28 0.16
45 1 0.01
46 19 0.11
47 66 0.38
48 41 0.23
49 13 0.07
50 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTATGTGCC
Done.