Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 110 of 253
Found at i:34453392 original size:94 final size:93
Alignment explanation
Indices: 34453144--34453414 Score: 304
Period size: 94 Copynumber: 2.9 Consensus size: 93
34453134 ATGGGATAAA
*
34453144 TTGTTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATACGT-GCTGATGCATGT
1 TTGTTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-CGTGGCCGATGCATGT
* *
34453208 CCCGGACATGTCTTACACTAGCACAACTCT
64 CCCAGACATGTCTTACACTGGCACAACTCT
* ** * * * * *
34453238 TAGCCGATG-CGTGTCCCAAACA-CGTCTTACAATGGCTATCTC-T-ATCGAGGCCGATGCATGT
1 TTGTTGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAATCGTGGCCGATGCATGT
* *
34453299 CCCAGACATGTCTTACTCTGGCAC-TCATCT
64 CCCAGACATGTCTTACACTGGCACAAC-TCT
*
34453329 ATGTGTTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGAAGCATGT
1 -T-TGTTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCATGT
34453393 CCCAGACATGTCTTACACTGGC
64 CCCAGACATGTCTTACACTGGC
34453415 GCACAAATCA
Statistics
Matches: 144, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
90 3 0.02
91 37 0.26
92 13 0.09
93 21 0.15
94 56 0.39
95 14 0.10
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (93 bp):
TTGTTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCATGTCC
CAGACATGTCTTACACTGGCACAACTCT
Found at i:34459829 original size:40 final size:40
Alignment explanation
Indices: 34459762--34459862 Score: 136
Period size: 40 Copynumber: 2.5 Consensus size: 40
34459752 AATTGTACCT
*
34459762 GGGCTTAAAGACCCGCAGGCTATATGCTGGAATG-TCATCC
1 GGGCTTAAAGACCCGCAGGCTATATGCTAGAATGCT-ATCC
34459802 GGGCTTAAAGACCCGCAGGCT-TCATGCTAGAATGCTATCC
1 GGGCTTAAAGACCCGCAGGCTAT-ATGCTAGAATGCTATCC
* *
34459842 GAGC-TAGAGACCCGCAGGCTA
1 GGGCTTAAAGACCCGCAGGCTA
34459863 CGAGATGGTA
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
39 16 0.29
40 38 0.69
41 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.28, T:0.20
Consensus pattern (40 bp):
GGGCTTAAAGACCCGCAGGCTATATGCTAGAATGCTATCC
Found at i:34465077 original size:28 final size:28
Alignment explanation
Indices: 34465045--34465109 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 28
34465035 AGATTGGCAT
34465045 TAAGTGTGCGAGTTT-AAT-TGTATAGCAC
1 TAAGTGTGCGAGTTTGAATAT-TA-AGCAC
*
34465073 TAAGTGTGCGAGTTTGACTATTAAGCAC
1 TAAGTGTGCGAGTTTGAATATTAAGCAC
34465101 TAAGTGTGC
1 TAAGTGTGC
34465110 AGACTTACTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
28 29 0.85
29 4 0.12
30 1 0.03
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
TAAGTGTGCGAGTTTGAATATTAAGCAC
Found at i:34470408 original size:40 final size:40
Alignment explanation
Indices: 34470330--34470418 Score: 117
Period size: 40 Copynumber: 2.2 Consensus size: 40
34470320 TGAGGAATTG
* * *
34470330 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAAGCTATATGCTCGAATGC
* *
34470370 TATCTGGGCTTAAAGACCCGCAAGCT-TCGTGCTCGAATGC
1 TATCCGGGCTTAAAGACCCGCAAGCTAT-ATGCTCGAATGC
34470410 TATCCGGGC
1 TATCCGGGC
34470419 GAGAGACCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.02
40 41 0.98
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAAGCTATATGCTCGAATGC
Found at i:34475589 original size:27 final size:26
Alignment explanation
Indices: 34475531--34475637 Score: 115
Period size: 27 Copynumber: 4.0 Consensus size: 26
34475521 AGCATGGCTG
* *
34475531 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
34475557 CCAGAATAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
* *
34475584 CTAGAACAGATATATGTGGCAGAGCTA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
34475611 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
34475638 ACCCATGTCC
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 14 0.21
27 50 0.76
28 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:34475637 original size:54 final size:53
Alignment explanation
Indices: 34475533--34475637 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 53
34475523 CATGGCTGCC
*
34475533 AGAACAGATAATGTGACAGAGTCACCAGAATAGATAATCGTGGTAGAGCCACT
1 AGAACAGATAATGTGACAGAGTCACCAGAATAGATAATCGTGGCAGAGCCACT
* * *
34475586 AGAACAGATATATGTGGCAGAG-CTACCAG-ATCAGATAATTGTGGCATAGCCA
1 AGAACAGATA-ATGTGACAGAGTC-ACCAGAAT-AGATAATCGTGGCAGAGCCA
34475638 ACCCATGTCC
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (53 bp):
AGAACAGATAATGTGACAGAGTCACCAGAATAGATAATCGTGGCAGAGCCACT
Found at i:34477080 original size:24 final size:24
Alignment explanation
Indices: 34477045--34477097 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
34477035 CCAACACCGT
34477045 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
* *
34477069 TCTCCCTTATCAGCTCCTAAATCT
1 TCTCCCTAATCAGCTCCTAAATCC
34477093 TCTCC
1 TCTCC
34477098 TGATAGCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.21, C:0.42, G:0.04, T:0.34
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCTAAATCC
Found at i:34481032 original size:119 final size:120
Alignment explanation
Indices: 34480826--34481048 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
34480816 TCCTCGTTCA
*
34480826 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
34480891 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
34480946 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
34481008 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
34481049 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:34481048 original size:40 final size:40
Alignment explanation
Indices: 34480824--34481048 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
34480814 GCTCCTCGTT
* *
34480824 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
34480864 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
34480904 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
34480944 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
34480983 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
34481024 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34481049 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:34488994 original size:117 final size:119
Alignment explanation
Indices: 34488814--34489034 Score: 297
Period size: 117 Copynumber: 1.9 Consensus size: 119
34488804 TCCTCGTTCA
**
34488814 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
34488879 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * **
34488933 AATGCCTTCGGG-CTTAGCCCGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* * *
34488995 TATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
65 TATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
34489035 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
116 3 0.03
117 57 0.64
118 17 0.19
119 12 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:34489034 original size:40 final size:40
Alignment explanation
Indices: 34488812--34489034 Score: 285
Period size: 40 Copynumber: 5.7 Consensus size: 40
34488802 GCTCCTCGTT
* *
34488812 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
34488852 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
34488892 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
34488932 C-AATGCCTTCGGG-CTTAGCCCGAAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
34488969 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
34489010 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34489035 CATCATTCAA
Statistics
Matches: 163, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
37 14 0.09
38 19 0.12
39 22 0.13
40 97 0.60
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:34494885 original size:46 final size:46
Alignment explanation
Indices: 34494835--34494960 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 46
34494825 TCTGTCGAGG
* *
34494835 CCGATGCATGTCCCAGACATGTCTTACTCTGGCA-CTCATCTATGT-A
1 CCGATGCATGTCCCAGACATGTCTTACACTGG-ATCTCAT-AATGTGA
* *
34494881 CCGATGCAATGTCCCAAACATGGTCTTACACTGGATCTCATAATGTGG
1 CCGATGC-ATGTCCCAGACAT-GTCTTACACTGGATCTCATAATGTGA
* * *
34494929 CTGAAGCATGTCCTAGACATGTCTTACACTGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGG
34494961 TGTACAAATC
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
46 19 0.28
47 28 0.41
48 21 0.31
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGATCTCATAATGTGA
Found at i:34496431 original size:11 final size:11
Alignment explanation
Indices: 34496415--34496441 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
34496405 CTTTATGGAT
34496415 TTGATGACATA
1 TTGATGACATA
34496426 TTGATGACATA
1 TTGATGACATA
34496437 TTGAT
1 TTGAT
34496442 TTATTCGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (11 bp):
TTGATGACATA
Found at i:34500585 original size:79 final size:81
Alignment explanation
Indices: 34500445--34500629 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
34500435 TTGAATGATG
*
34500445 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
34500509 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * *
34500524 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCAGG-TTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCC-GGACTAAGAT-CCGAAGGC
*
34500585 ATTTGTGCGAGTTACTATA
63 ATTTGTGCGAGATACTATA
* *
34500604 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34500630 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 56 0.61
80 35 0.38
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:34500643 original size:40 final size:40
Alignment explanation
Indices: 34500446--34500629 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
34500436 TGAATGATGT
* * * *
34500446 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
34500486 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
34500526 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
34500564 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34500605 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34500630 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34500651 original size:79 final size:79
Alignment explanation
Indices: 34500498--34500662 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
34500488 GGACTAAGAT
* **
34500498 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
34500563 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATC
* *
34500577 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
34500640 TATATCC-GGTTAAATT
63 TAAATCCAGGTTAAATC
34500656 CCGAAGG
1 CCGAAGG
34500663 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCAGGTTAAATC
Found at i:34503009 original size:44 final size:44
Alignment explanation
Indices: 34502945--34503094 Score: 193
Period size: 43 Copynumber: 3.5 Consensus size: 44
34502935 TATGTGTTAT
*
34502945 CGTGTAAGACCACGTTTGGGACACTGGCATCGACT-TTTGATTTA
1 CGTGTAAGACCACGTCTGGGACACTGGCATCGA-TATTTGATTTA
**
34502989 CGTGTAAGACCACGTCTGGGACGTTGGCATCG-TATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACACTGGCATCGATATTTGATTTA
* *
34503031 CGTGTAAGACC-CTGTCTAGGACAGTGGCATCGATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGACACTGGCATCGATATTTGATTTA
*
34503074 CATGTAAGACCACGTCTGGGA
1 CGTGTAAGACCACGTCTGGGA
34503095 TGTTGGCATT
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 30 0.32
43 32 0.34
44 30 0.32
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTGGGACACTGGCATCGATATTTGATTTA
Found at i:34505569 original size:13 final size:13
Alignment explanation
Indices: 34505551--34505584 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
34505541 CCTAGCACAC
34505551 GCCCGTGTGCCTG
1 GCCCGTGTGCCTG
34505564 GCCCGTGTGCCTG
1 GCCCGTGTGCCTG
34505577 GCCCGTGT
1 GCCCGTGT
34505585 CCTTCACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.38, G:0.38, T:0.24
Consensus pattern (13 bp):
GCCCGTGTGCCTG
Found at i:34518073 original size:52 final size:52
Alignment explanation
Indices: 34517945--34518122 Score: 206
Period size: 51 Copynumber: 3.5 Consensus size: 52
34517935 CCGATACCTG
* * * * *
34517945 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCCACCTTT-TTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTTCTTCACAAA
* *
34517996 GTGGCCTTGACATAGTACCAGACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
* *
34518048 GTGGCTTTCACATAGTCCCACACTTGTGACC-AAGCTATC--TCTT-ATCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCA-CAAA
*
34518097 GTGGCCTTCAAATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
34518123 AGTCACTAGT
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
48 1 0.01
49 31 0.28
51 42 0.38
52 36 0.33
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
Found at i:34529954 original size:23 final size:21
Alignment explanation
Indices: 34529909--34529963 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 21
34529899 TCATTGACTC
34529909 ATTC-TATTTTTTTATTTTTT
1 ATTCTTATTTTTTTATTTTTT
*
34529929 ATTCTTATTTTTATTCTTATTTT
1 ATTCTTATTTTT-TTATT-TTTT
*
34529952 ATTTTTATTTTT
1 ATTCTTATTTTT
34529964 CTTTTGATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 4 0.13
21 7 0.23
22 4 0.13
23 15 0.50
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (21 bp):
ATTCTTATTTTTTTATTTTTT
Found at i:34529968 original size:29 final size:29
Alignment explanation
Indices: 34529918--34529985 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
34529908 CATTCTATTT
*
34529918 TTTTATTTTTTATTCTTATTTTTATTCTTA
1 TTTTA-TTTTTATTCTTATTTTGATTCTTA
* * *
34529948 TTTTATTTTTATTTTTCTTTTGATTTTTA
1 TTTTATTTTTATTCTTATTTTGATTCTTA
34529977 TTTTCATTT
1 TTTT-ATTT
34529986 CAATTTTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 24 0.73
30 9 0.27
ACGTcount: A:0.15, C:0.06, G:0.01, T:0.78
Consensus pattern (29 bp):
TTTTATTTTTATTCTTATTTTGATTCTTA
Found at i:34529973 original size:23 final size:24
Alignment explanation
Indices: 34529917--34529978 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
34529907 TCATTCTATT
34529917 TTTTTATTTTTTATTCTTATTTTTA
1 TTTTTA-TTTTTATTCTTATTTTTA
* * *
34529942 TTCTTA-TTTTATTTTTATTTTTC
1 TTTTTATTTTTATTCTTATTTTTA
*
34529965 TTTTGATTTTTATT
1 TTTTTATTTTTATT
34529979 TTCATTTCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 19 0.61
24 7 0.23
25 5 0.16
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.79
Consensus pattern (24 bp):
TTTTTATTTTTATTCTTATTTTTA
Found at i:34529975 original size:7 final size:6
Alignment explanation
Indices: 34529917--34529985 Score: 77
Period size: 6 Copynumber: 11.5 Consensus size: 6
34529907 TCATTCTATT
* * *
34529917 TTTTTA TTTTTTA TTCTTA TTTTTA TTCTTA -TTTTA TTTTTA TTTTTC
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
34529965 TTTTGA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTT
34529986 CAATTTTATT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
5 4 0.08
6 42 0.81
7 6 0.12
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:34529980 original size:12 final size:11
Alignment explanation
Indices: 34529918--34530005 Score: 70
Period size: 12 Copynumber: 7.4 Consensus size: 11
34529908 CATTCTATTT
34529918 TTTTATTTTTTA
1 TTTTA-TTTTTA
34529930 TTCTTATTTTTA
1 TT-TTATTTTTA
34529942 TTCTTA-TTTTA
1 TT-TTATTTTTA
*
34529953 TTTTTATTTTTC
1 -TTTTATTTTTA
34529965 TTTTGATTTTTA
1 TTTT-ATTTTTA
**
34529977 TTTTCATTTCAA
1 TTTT-ATTTTTA
34529989 TTTTATTATTTTA
1 TTTTA-T-TTTTA
34530002 TTTT
1 TTTT
34530006 GAAAGACATA
Statistics
Matches: 63, Mismatches: 7, Indels: 11
0.78 0.09 0.14
Matches are distributed among these distances:
11 13 0.21
12 40 0.63
13 10 0.16
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:34529980 original size:17 final size:16
Alignment explanation
Indices: 34529933--34529995 Score: 63
Period size: 17 Copynumber: 3.7 Consensus size: 16
34529923 TTTTTTATTC
*
34529933 TTATTTTTATTCTTATT
1 TTATTTTTATT-TTCTT
34529950 TTATTTTTATTTTTCTT
1 TTATTTTTA-TTTTCTT
34529967 TTGATTTTTATTTTCATT
1 TT-ATTTTTATTTTC-TT
* *
34529985 TCAATTTTATT
1 TTATTTTTATT
34529996 ATTTTATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
17 28 0.70
18 12 0.30
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (16 bp):
TTATTTTTATTTTCTT
Found at i:34532921 original size:13 final size:13
Alignment explanation
Indices: 34532905--34532937 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
34532895 TTTAATTAAA
*
34532905 TTAGTTAATTAGT
1 TTAGATAATTAGT
34532918 TTAGATAATTAGT
1 TTAGATAATTAGT
34532931 TTA-ATAA
1 TTAGATAA
34532938 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:34533592 original size:49 final size:50
Alignment explanation
Indices: 34533428--34533604 Score: 230
Period size: 52 Copynumber: 3.5 Consensus size: 50
34533418 GGATGCCCGT
* * * ** *
34533428 TGGCCTGCACATAGTGCCACCCTTGTAGTCAATGCTACCTTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTAACCAA-GCTATCTTCTTCACAAAG
* *
34533479 TGGCCTTCACATAGTACCACAGTTGTGACCAAAGCTATCTTTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTAACC-AAGCTATC-TTCTTCACAAAG
*
34533531 TGGCCTTCACATAGTACCACACTTGTAACCAAGCTATC-TCTTCTCAAAG
1 TGGCCTTCACATAGTACCACACTTGTAACCAAGCTATCTTCTTCACAAAG
*
34533580 TGGCTTTCACATAGTACCACACTTG
1 TGGCCTTCACATAGTACCACACTTG
34533605 AGTCACTAGT
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 34 0.30
51 36 0.32
52 42 0.38
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (50 bp):
TGGCCTTCACATAGTACCACACTTGTAACCAAGCTATCTTCTTCACAAAG
Found at i:34534720 original size:23 final size:23
Alignment explanation
Indices: 34534690--34534737 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
34534680 TGAAATTTTA
34534690 GACTATAAAAATATAATAAAAGT
1 GACTATAAAAATATAATAAAAGT
34534713 GACTATAAAAATATAATAAAAGT
1 GACTATAAAAATATAATAAAAGT
34534736 GA
1 GA
34534738 ACTTTACTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.60, C:0.04, G:0.10, T:0.25
Consensus pattern (23 bp):
GACTATAAAAATATAATAAAAGT
Found at i:34536585 original size:12 final size:12
Alignment explanation
Indices: 34536568--34536599 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
34536558 ATACATATGG
34536568 TTTAGTTGCTTA
1 TTTAGTTGCTTA
*
34536580 TTTAGTTTCTTA
1 TTTAGTTGCTTA
34536592 TTTAGTTG
1 TTTAGTTG
34536600 TTTTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.06, G:0.16, T:0.62
Consensus pattern (12 bp):
TTTAGTTGCTTA
Found at i:34549556 original size:19 final size:19
Alignment explanation
Indices: 34549519--34549556 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
34549509 ACTTGTCAAA
*
34549519 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
34549538 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
34549557 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:34550306 original size:14 final size:13
Alignment explanation
Indices: 34550283--34550314 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
34550273 GGAATATCAA
34550283 AACAATAATTAAG
1 AACAATAATTAAG
34550296 AACACATAATTAAG
1 AACA-ATAATTAAG
34550310 AACAA
1 AACAA
34550315 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:34556074 original size:27 final size:27
Alignment explanation
Indices: 34555957--34556074 Score: 141
Period size: 27 Copynumber: 4.4 Consensus size: 27
34555947 CCTTATGTGA
* * *
34555957 TAAAATGACGAAAATACTCCTATAAGGG
1 TAAAATGACTATAATACCCCTATAA-GG
*
34555985 T-AAATGACCGA-AATACCCCTATAAGG
1 TAAAATGA-CTATAATACCCCTATAAGG
*
34556011 TAAAATGATTATAATACCCCTATAAGG
1 TAAAATGACTATAATACCCCTATAAGG
**
34556038 TAAAATGACTATAATACCCCTGCAAGG
1 TAAAATGACTATAATACCCCTATAAGG
34556065 TAAAATGACT
1 TAAAATGACT
34556075 GATTTTCCCT
Statistics
Matches: 81, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
26 4 0.05
27 73 0.90
28 4 0.05
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (27 bp):
TAAAATGACTATAATACCCCTATAAGG
Found at i:34556555 original size:34 final size:34
Alignment explanation
Indices: 34556473--34556578 Score: 94
Period size: 34 Copynumber: 3.1 Consensus size: 34
34556463 TACATATTGC
* *
34556473 ACTGATTCT-ATAATGGGCTTAGG-CCTCACTGAT
1 ACTGATTCTGA-AATGGGCTAAGGCCCACACTGAT
* * *
34556506 ACTG-TTACTGGAATGGGCTCAGGCCCACACTGTT
1 ACTGATT-CTGAAATGGGCTAAGGCCCACACTGAT
* *
34556540 TCTGATTCTGAAATGGGCTAAGGCCCTA-ACTGAA
1 ACTGATTCTGAAATGGGCTAAGGCCC-ACACTGAT
34556574 ACTGA
1 ACTGA
34556579 AAGGGGTTAG
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
32 2 0.03
33 17 0.29
34 36 0.62
35 3 0.05
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (34 bp):
ACTGATTCTGAAATGGGCTAAGGCCCACACTGAT
Found at i:34560621 original size:40 final size:40
Alignment explanation
Indices: 34560544--34560766 Score: 285
Period size: 40 Copynumber: 5.5 Consensus size: 40
34560534 ACCCAAGTAT
*
34560544 CTTCGGGATTTAG-CCGGATATAG-CAACT-CACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAC-CACAAATGC
* *
34560583 CTTCGGGTCTTAGCCCGGATATAGTCACTACCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTACCACAAATGC
*
34560623 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTACCACAAATGC
34560663 CTTCGGGACTTAGCCCGG-TATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA--C-CACAAATGC
* **
34560705 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTACCACAAATGC
*
34560745 CTTCGGGACTTAGCTCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
34560767 CATCCGAATA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 1 0.01
39 20 0.12
40 106 0.65
41 2 0.01
42 27 0.16
43 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTACCACAAATGC
Found at i:34560726 original size:82 final size:80
Alignment explanation
Indices: 34560544--34560766 Score: 303
Period size: 82 Copynumber: 2.8 Consensus size: 80
34560534 ACCCAAGTAT
* *
34560544 CTTCGGGATTTAG-CCGGATATAG-CAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
34560606 GTCACTACCATAAATGC
64 GTCACTACCACAAATGC
34560623 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
34560686 CAACTACTCGCACAAATGC
66 C-ACTA--C-CACAAATGC
* * *
34560705 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCTCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
34560767 CATCCGAATA
Statistics
Matches: 130, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
78 1 0.01
79 22 0.17
80 39 0.30
81 2 0.02
82 63 0.48
83 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTACCACAAATGC
Found at i:34560758 original size:122 final size:119
Alignment explanation
Indices: 34560544--34560766 Score: 331
Period size: 122 Copynumber: 1.8 Consensus size: 119
34560534 ACCCAAGTAT
* * *
34560544 CTTCGGGATTTAGCCGGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGACTTAGCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
34560609 ACTACCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
66 ACTACCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
34560663 CTTCGGGACTTAGCCCGG-TATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATATAGC-A--ACTCACACAAATGCCTTCGGGACTTAGCCCGGATAT
** *
34560727 AGTAACTTGCACAAATGCCTTCGGGACTTAGCTCGGATAT
62 AGTAACTACCACAAATGCCTTCGGGACTTAGCCCGGATAT
34560767 CATCCGAATA
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
119 18 0.20
120 5 0.05
122 69 0.75
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
CTTCGGGACTTAGCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
ACTACCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:34568735 original size:40 final size:40
Alignment explanation
Indices: 34568658--34568881 Score: 283
Period size: 40 Copynumber: 5.5 Consensus size: 40
34568648 ACCCAAGTAT
* *
34568658 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
34568697 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
34568737 CTTCGGGACTTAGCCCGGATCTAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
34568777 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCATACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA-GC--ACAAATGC
** * *
34568820 CTTCGGGACTTAGCCCAAATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
34568860 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
34568882 CATCCGAATA
Statistics
Matches: 160, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 12 0.08
40 113 0.71
41 2 0.01
42 1 0.01
43 32 0.20
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:34568859 original size:83 final size:80
Alignment explanation
Indices: 34568658--34568881 Score: 299
Period size: 83 Copynumber: 2.8 Consensus size: 80
34568648 ACCCAAGTAT
* * * *
34568658 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
34568722 CACTAGCATAAATGC
66 CACTAGCATAAATGC
* * *
34568737 CTTCGGGACTTAGCCCGGATCTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
34568801 CAACTACTCATACAAATGC
66 C-ACTA-GCAT--AAATGC
** *
34568820 CTTCGGGACTTAGCCCAAATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
34568882 CATCCGAATA
Statistics
Matches: 126, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 13 0.10
80 48 0.38
81 3 0.02
83 62 0.49
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCATAAATGC
Found at i:34571140 original size:54 final size:53
Alignment explanation
Indices: 34571055--34571178 Score: 169
Period size: 54 Copynumber: 2.3 Consensus size: 53
34571045 GGTACCTGAA
* * * * *
34571055 CCCTTTTGAGAAAAATTGAGTATTTTTCCCTTATGTTATAAAATGACTATTTTT
1 CCCTTATGAGAAAAA-TGACTATTTTGCCCTTATGTGATAAAATGACAATTTTT
34571109 CCCTTATGAGACAAAATGACTATTTTGCCCTTATGTGATAAAATGACAATTTTT
1 CCCTTATGAGA-AAAATGACTATTTTGCCCTTATGTGATAAAATGACAATTTTT
34571163 -CCTTATGAGATAAAAT
1 CCCTTATGAGA-AAAAT
34571179 AGCCGAAATA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
53 15 0.24
54 44 0.70
55 4 0.06
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (53 bp):
CCCTTATGAGAAAAATGACTATTTTGCCCTTATGTGATAAAATGACAATTTTT
Found at i:34571174 original size:26 final size:27
Alignment explanation
Indices: 34571055--34571178 Score: 153
Period size: 27 Copynumber: 4.6 Consensus size: 27
34571045 GGTACCTGAA
* *
34571055 CCCTTTTGAGA-AAAATTGAGTATTTTT
1 CCCTTATGAGATAAAA-TGACTATTTTT
**
34571082 CCCTTATGTTATAAAATGACTATTTTT
1 CCCTTATGAGATAAAATGACTATTTTT
* *
34571109 CCCTTATGAGACAAAATGACTATTTTG
1 CCCTTATGAGATAAAATGACTATTTTT
* *
34571136 CCCTTATGTGATAAAATGACAATTTTT
1 CCCTTATGAGATAAAATGACTATTTTT
34571163 -CCTTATGAGATAAAAT
1 CCCTTATGAGATAAAAT
34571179 AGCCGAAATA
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.18
27 64 0.77
28 4 0.05
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (27 bp):
CCCTTATGAGATAAAATGACTATTTTT
Found at i:34571242 original size:27 final size:27
Alignment explanation
Indices: 34571212--34571290 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
34571202 AAATGGCCAA
**
34571212 AATACCCCTATAACATAAAATGACTAT
1 AATACCCCTATAAGGTAAAATGACTAT
* * *
34571239 AATACTCCTACAAGGTAAAATTACTAT
1 AATACCCCTATAAGGTAAAATGACTAT
*
34571266 AATACCCCTGTAAGGTAAAATGACT
1 AATACCCCTATAAGGTAAAATGACT
34571291 GATTTGCCCT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (27 bp):
AATACCCCTATAAGGTAAAATGACTAT
Found at i:34592664 original size:21 final size:21
Alignment explanation
Indices: 34592618--34592665 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
34592608 AGTTTCTACC
* *
34592618 TATTCAAAACACATTCAAACA
1 TATTCAAAACACATACAAAAA
34592639 T-TTCAAAA-ACATACTAAAAA
1 TATTCAAAACACATAC-AAAAA
34592659 TATTCAA
1 TATTCAA
34592666 CCTAAGTGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 5 0.22
20 12 0.52
21 6 0.26
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (21 bp):
TATTCAAAACACATACAAAAA
Found at i:34593399 original size:26 final size:27
Alignment explanation
Indices: 34593366--34593422 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
34593356 CAATATAGAC
34593366 ATTT-CATATAACAC-A-TCATATAATT
1 ATTTCCATATAAC-CGATTCATATAATT
*
34593391 ATTTCCATATAACCGATTTATATAATT
1 ATTTCCATATAACCGATTCATATAATT
34593418 ATTTC
1 ATTTC
34593423 GTTTACCTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 5 0.18
26 9 0.32
27 14 0.50
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.44
Consensus pattern (27 bp):
ATTTCCATATAACCGATTCATATAATT
Found at i:34593499 original size:44 final size:39
Alignment explanation
Indices: 34593368--34593544 Score: 133
Period size: 40 Copynumber: 4.4 Consensus size: 39
34593358 ATATAGACAT
* *
34593368 TTCATATAACACA--TCATATAATTATTTCCATATAACCGA
1 TTCATATAAC-CATTTCATATAACTATTT-CATATAACCAA
* ** * * * **
34593407 TTTATATAATTATTTCGTTTACCTATTTCCATATAACTGA
1 TTCATATAACCATTTCATATAACTATTT-CATATAACCAA
*
34593447 TTCATATAACCATTCTGTATATATATCTATTTCAATATAACCAA
1 TTCATATAACCATT-T-CATATA-A-CTATTTC-ATATAACCAA
* * * *
34593491 TTCTTATAATCATTTCATATAACCATTTCGTATAACCAA
1 TTCATATAACCATTTCATATAACTATTTCATATAACCAA
34593530 TTCATATAACCATTT
1 TTCATATAACCATTT
34593545 GGAATAGCCA
Statistics
Matches: 107, Mismatches: 24, Indels: 14
0.74 0.17 0.10
Matches are distributed among these distances:
38 1 0.01
39 30 0.28
40 38 0.36
41 2 0.02
42 8 0.07
43 2 0.02
44 26 0.24
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.42
Consensus pattern (39 bp):
TTCATATAACCATTTCATATAACTATTTCATATAACCAA
Found at i:34593499 original size:84 final size:81
Alignment explanation
Indices: 34593383--34593543 Score: 191
Period size: 84 Copynumber: 2.0 Consensus size: 81
34593373 ATAACACATC
* * * * * **
34593383 ATATAATTATTTCCATATAACCGATTTATATAATTATTTCGT-TTACCTATTTCCATATAACTGA
1 ATATAATTATTTCAATATAACCAATTTATATAATCATTTCATATAACC-ATTT-CATATAACCAA
34593447 TTCATATAACCATTCTGT
64 TTCATATAACCATTCTGT
*
34593465 ATATATATCTATTTCAATATAACCAATTCT-TATAATCATTTCATATAACCATTTCGTATAACCA
1 ATATA-AT-TATTTCAATATAACCAATT-TATATAATCATTTCATATAACCATTTCATATAACCA
34593529 ATTCATATAACCATT
63 ATTCATATAACCATT
34593544 TGGAATAGCC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
82 5 0.07
83 24 0.36
84 33 0.49
85 5 0.07
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.43
Consensus pattern (81 bp):
ATATAATTATTTCAATATAACCAATTTATATAATCATTTCATATAACCATTTCATATAACCAATT
CATATAACCATTCTGT
Found at i:34593511 original size:13 final size:13
Alignment explanation
Indices: 34593365--34593544 Score: 100
Period size: 13 Copynumber: 13.4 Consensus size: 13
34593355 TCAATATAGA
34593365 CATTTCATATAAC
1 CATTTCATATAAC
*
34593378 ACA--TCATATAAT
1 -CATTTCATATAAC
*
34593390 TATTTCCATATAAC
1 CATTT-CATATAAC
*
34593404 CGATTT-ATATAAT
1 C-ATTTCATATAAC
* * *
34593417 TATTTCGT-TTAC
1 CATTTCATATAAC
34593429 CTATTTCCATATAAC
1 C-ATTT-CATATAAC
*
34593444 TGA-TTCATATAAC
1 -CATTTCATATAAC
*
34593457 CATTCTGTATATATATC
1 CATT-T-CATATA-A-C
*
34593474 TATTTCAATATAAC
1 CATTTC-ATATAAC
* * *
34593488 CAATTCTTATAAT
1 CATTTCATATAAC
34593501 CATTTCATATAAC
1 CATTTCATATAAC
*
34593514 CATTTCGTATAAC
1 CATTTCATATAAC
*
34593527 CAATTCATATAAC
1 CATTTCATATAAC
34593540 CATTT
1 CATTT
34593545 GGAATAGCCA
Statistics
Matches: 123, Mismatches: 28, Indels: 31
0.68 0.15 0.17
Matches are distributed among these distances:
11 1 0.01
12 15 0.12
13 63 0.51
14 19 0.15
15 14 0.11
16 7 0.06
17 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.42
Consensus pattern (13 bp):
CATTTCATATAAC
Found at i:34593524 original size:26 final size:26
Alignment explanation
Indices: 34593365--34593544 Score: 127
Period size: 26 Copynumber: 6.7 Consensus size: 26
34593355 TCAATATAGA
34593365 CATTTCATATAACACA--TCATATAAT
1 CATTTCATATAAC-CATTTCATATAAT
*
34593390 TATTTCCATATAACCGATTT-ATATAAT
1 CATTT-CATATAACC-ATTTCATATAAT
* * *
34593417 TATTTCGT-TTACCTATTTCCATATAACT
1 CATTTCATATAACC-ATTT-CATATAA-T
* *
34593445 GA-TTCATATAACCATTCTGTATATATAT
1 CATTTCATATAACCATT-T-CATATA-AT
* *
34593473 CTATTTCAATATAACCAATTCTTATAAT
1 C-ATTTC-ATATAACCATTTCATATAAT
* *
34593501 CATTTCATATAACCATTTCGTATAAC
1 CATTTCATATAACCATTTCATATAAT
*
34593527 CAATTCATATAACCATTT
1 CATTTCATATAACCATTT
34593545 GGAATAGCCA
Statistics
Matches: 125, Mismatches: 17, Indels: 25
0.75 0.10 0.15
Matches are distributed among these distances:
25 13 0.10
26 45 0.36
27 30 0.24
28 17 0.14
29 6 0.05
30 4 0.03
31 10 0.08
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.42
Consensus pattern (26 bp):
CATTTCATATAACCATTTCATATAAT
Found at i:34600669 original size:75 final size:75
Alignment explanation
Indices: 34600557--34600700 Score: 234
Period size: 75 Copynumber: 1.9 Consensus size: 75
34600547 AATGATGGGA
*
34600557 AAAATAGTATATACCCGAGTTGTACTTAGAGGAAATGGCAACCTAGTTTGTTTGACTAACAGGAA
1 AAAATAGTATATACCCGAGTTATACTTAGAGGAAATGGCAACCTAGTTTGTTTGACTAACAGGAA
34600622 AATGAGACAC
66 AATGAGACAC
* * * * *
34600632 AAAATAGTATCTACCTGAGTTATACTTAGTGGAAATGGCAACCTAGTTTGTTTGGCTAATAGGAA
1 AAAATAGTATATACCCGAGTTATACTTAGAGGAAATGGCAACCTAGTTTGTTTGACTAACAGGAA
34600697 AATG
66 AATG
34600701 GGGCATCATT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 63 1.00
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (75 bp):
AAAATAGTATATACCCGAGTTATACTTAGAGGAAATGGCAACCTAGTTTGTTTGACTAACAGGAA
AATGAGACAC
Found at i:34604983 original size:26 final size:26
Alignment explanation
Indices: 34604932--34604984 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
34604922 TCGAAAAGTG
* * *
34604932 TGGTTTTGGATCTCCATTTTCGTAAA
1 TGGTTTTGGAACTCCATTTGCATAAA
*
34604958 TGGTTTTGGAACTCTATTTGCATAAA
1 TGGTTTTGGAACTCCATTTGCATAAA
34604984 T
1 T
34604985 TGGGCTCATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.45
Consensus pattern (26 bp):
TGGTTTTGGAACTCCATTTGCATAAA
Found at i:34606623 original size:48 final size:46
Alignment explanation
Indices: 34606552--34606718 Score: 167
Period size: 48 Copynumber: 3.5 Consensus size: 46
34606542 AGTACCAACG
* * *
34606552 CCATGTCCTAGACATGGTCTTACATGAATCCACATATCATCACCGATT
1 CCATGTCCCAGACATGGTCTTACATG-A-GCACATATCATCACCGATA
* * * * *
34606600 CCATGTCCCAGACATGGTCTTACATGGGCACATATAACAACGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGAGCACATAT--CATCACCGATA
34606648 CCATGTCCCAGACATGGTCTTACACT-AGCACATAT-ATCACCGCTGATA
1 CCATGTCCCAGACATGGTCTTACA-TGAGCACATATCATCA-C-C-GATA
*
34606696 CCATGTCCCAAACATGGTCTTAC
1 CCATGTCCCAGACATGGTCTTAC
34606719 GCTGGCACTT
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
45 2 0.02
46 8 0.08
47 1 0.01
48 88 0.88
49 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (46 bp):
CCATGTCCCAGACATGGTCTTACATGAGCACATATCATCACCGATA
Found at i:34606778 original size:73 final size:73
Alignment explanation
Indices: 34606658--34606818 Score: 268
Period size: 73 Copynumber: 2.2 Consensus size: 73
34606648 CCATGTCCCA
34606658 GACATGGTCTTACACTAGCACATATATCACCGCTGATACCATGTCCCAAACATGGTCTTACGCTG
1 GACATGGTCTTACACTAGCACATATATCACCGCTGATACCATGTCCCAAACATGGTCTTACGCTG
34606723 GCACTTGG
66 GCACTTGG
** * * * *
34606731 GACATGGTCTTATGCTGGCACATATATCATCGCTGATTCCATTTCCCAAACATGGTCTTACGCTG
1 GACATGGTCTTACACTAGCACATATATCACCGCTGATACCATGTCCCAAACATGGTCTTACGCTG
34606796 GCACTTGG
66 GCACTTGG
34606804 GACATGGTCTTACAC
1 GACATGGTCTTACAC
34606819 AGTCACACAT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 80 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (73 bp):
GACATGGTCTTACACTAGCACATATATCACCGCTGATACCATGTCCCAAACATGGTCTTACGCTG
GCACTTGG
Found at i:34610361 original size:37 final size:37
Alignment explanation
Indices: 34610296--34610397 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
34610286 CGAATAGTCC
*
34610296 CCACACGTAGTTATC-GGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
34610332 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
34610369 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
34610398 ATATATTTCC
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
36 14 0.22
37 49 0.78
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:34610624 original size:48 final size:48
Alignment explanation
Indices: 34610570--34611405 Score: 1395
Period size: 48 Copynumber: 17.4 Consensus size: 48
34610560 GCCGAATCAC
*
34610570 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
34610618 TAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
34610666 TAGCCATTCGGCTTTACCACGTATGCATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
34610714 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
34610762 TAGCCATTCGGCTTCACCACATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
34610810 TAGACATTCGACTTCACCACATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
34610858 TAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
34610906 TAGCCATTCGGCTTTACCACGTATGCATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
34610954 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
34611002 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
34611050 TAGCCATTCGGC-TTACCACATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
34611097 TAGACATTCGACTTCACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
34611145 TAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
34611193 TAGCCATTCGGCTTTACCACGTATGCATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
34611241 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
34611289 TAGCCATTCGGCTTCACCACATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
34611337 TAGACATTCGACTTCACCACATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
34611385 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
34611406 CACATATATA
Statistics
Matches: 737, Mismatches: 50, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
47 44 0.06
48 693 0.94
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:34615525 original size:47 final size:47
Alignment explanation
Indices: 34615474--34615955 Score: 705
Period size: 47 Copynumber: 10.1 Consensus size: 47
34615464 TTAGGATTTT
*
34615474 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
34615521 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
34615572 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
34615619 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
34615666 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
34615713 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
34615766 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
34615813 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG-ATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
34615859 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
34615906 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
34615953 ATG
1 ATG
34615956 CGAAACGTGT
Statistics
Matches: 398, Mismatches: 26, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
46 43 0.11
47 266 0.67
48 1 0.00
49 2 0.01
51 43 0.11
52 1 0.00
53 42 0.11
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:34615585 original size:147 final size:142
Alignment explanation
Indices: 34615474--34615955 Score: 636
Period size: 147 Copynumber: 3.4 Consensus size: 142
34615464 TTAGGATTTT
34615474 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
*** ** *
34615539 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG--CGTAT-GTGT
64 C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATATTGT
34615601 GATAAGGCCGAATGGCCA
127 GATAAGG-CGAAT-GCCA
*
34615619 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
34615684 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGCGTG
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG-A-ATATATAT-TGTG
34615749 ATAAGGCCGAATGGCCA
128 ATAAGG-CGAAT-GCCA
*
34615766 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
34615831 TGCGTATGTGTGATAAGGCCG-ATGGCCAATGTGATGAATGTGAACATG--CATATA-TGAGATA
66 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATATTGTGATA
34615892 AGGCCGAATGGCCA
131 AGG-CGAAT-GCCA
* ** * * *
34615906 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
34615956 CGAAACGTGT
Statistics
Matches: 311, Mismatches: 20, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
140 64 0.21
141 46 0.15
142 5 0.02
143 1 0.00
145 65 0.21
146 26 0.08
147 104 0.33
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (142 bp):
ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATATTGTGATA
AGGCGAATGCCA
Found at i:34615782 original size:194 final size:192
Alignment explanation
Indices: 34615474--34615955 Score: 805
Period size: 194 Copynumber: 2.5 Consensus size: 192
34615464 TTAGGATTTT
*
34615474 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
34615539 CG-TATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGA
66 TGATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGA
* *
34615603 TAAGGCCGAATGGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
131 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG-ATGGCCA
34615666 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
34615731 TGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTG
66 TG-ATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTG
34615796 ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGATGGCCA
130 ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGATGGCCA
* * * *
34615859 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
34615924 TG--A-ATATAT--GTGGTAAGGCCGAATGGCTAATG
66 TGATATATATATGCGTGATAAGGCCGAATGGCCAATG
34615956 CGAAACGTGT
Statistics
Matches: 277, Mismatches: 11, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
187 21 0.08
189 6 0.02
190 1 0.00
192 65 0.23
193 70 0.25
194 114 0.41
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (192 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
TGATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGA
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGATGGCCA
Found at i:34615793 original size:23 final size:23
Alignment explanation
Indices: 34615766--34615840 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
34615756 CGAATGGCCA
34615766 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
34615789 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
34615813 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
34615836 ATGTG
1 ATGTG
34615841 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:34616018 original size:46 final size:46
Alignment explanation
Indices: 34615929--34616019 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
34615919 GAACATGAAT
* * * *
34615929 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
34615975 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
34616020 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:34616213 original size:37 final size:37
Alignment explanation
Indices: 34616163--34616270 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
34616153 GGAAATATAT
34616163 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
34616200 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * * *
34616237 TCCAGGAAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
34616271 TCGTCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:34620842 original size:21 final size:21
Alignment explanation
Indices: 34620803--34620842 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
34620793 TAATAATATA
* **
34620803 TCAATATTTTTATTTTAAATT
1 TCAATATTTTCATCATAAATT
34620824 TCAATATTTTCATCATAAA
1 TCAATATTTTCATCATAAA
34620843 AAAATAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (21 bp):
TCAATATTTTCATCATAAATT
Found at i:34626962 original size:18 final size:18
Alignment explanation
Indices: 34626939--34627013 Score: 96
Period size: 18 Copynumber: 4.2 Consensus size: 18
34626929 CCCAACTACT
*
34626939 GTATACGTGAATAGTATC
1 GTATACGTGAATAGTACC
* *
34626957 GTATACGTGAATAGTGCT
1 GTATACGTGAATAGTACC
* *
34626975 ATATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
34626993 GTATACGTAAATAGTACC
1 GTATACGTGAATAGTACC
34627011 GTA
1 GTA
34627014 AACGGTCGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:34636533 original size:16 final size:17
Alignment explanation
Indices: 34636508--34636545 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
34636498 TTGCGATCAT
34636508 TATTTTATTTA-TTA-A
1 TATTTTATTTACTTATA
34636523 TATTATTATTTACTTATA
1 TATT-TTATTTACTTATA
34636541 TATTT
1 TATTT
34636546 AACTACAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 4 0.20
16 7 0.35
17 4 0.20
18 5 0.25
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTTTATTTACTTATA
Found at i:34644018 original size:81 final size:82
Alignment explanation
Indices: 34643888--34644042 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 82
34643878 AATTTTTGAG
* * * * *
34643888 CAAATATTCTTTATTCTTTCCATTTATAATTACACTATACAGATAATTATTTTTAGATTCTTTTG
1 CAAATATTCTTTATTCTTTCCATTCATAATCACACCATACAGATAATTATTCTTAGATTCTTTCG
34643953 TACTTTGGACATTCTCT
66 TACTTTGGACATTCTCT
* * *
34643970 CAAATATTCTTTTATTC-TT-CATTCATGATCATACCATACAGATTATTATTCTTAGATTCTTTC
1 CAAATATTC-TTTATTCTTTCCATTCATAATCACACCATACAGATAATTATTCTTAGATTCTTTC
*
34644033 GTTCTTTGGA
65 GTACTTTGGA
34644043 TCTTCCTTCA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 45 0.71
82 11 0.17
83 7 0.11
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.49
Consensus pattern (82 bp):
CAAATATTCTTTATTCTTTCCATTCATAATCACACCATACAGATAATTATTCTTAGATTCTTTCG
TACTTTGGACATTCTCT
Found at i:34648682 original size:143 final size:140
Alignment explanation
Indices: 34648482--34648801 Score: 383
Period size: 143 Copynumber: 2.3 Consensus size: 140
34648472 TCATGGTGAC
* * * * * *
34648482 TCTTATCTCCTTGAAGTTGTAGTGAAGCAGATTGAAGCCATAAGTGTTATCTTCCTGAAGTTACA
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
* * * * * *
34648547 GCGGAGTAGACTAAAGACAGCAAATCTT-ATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTA
66 GCGGAGCAAACTAAACACAGCAAAT-TTAATTTCCCTGAAGTCGCAGCGGAACAGATTAAAGCCA
**
34648611 CAAATTATGGCGAA
130 CAAA-TA-CAC-AA
34648625 TCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
* * * * *
34648690 GCGGAGCAAACTAAACACAGCGAATTTAATTTCCTTGAAGTCGTAGCGGAATAGATTGAAGCCAC
66 GCGGAGCAAACTAAACACAGCAAATTTAATTTCCCTGAAGTCGCAGCGGAACAGATTAAAGCCAC
34648755 AAATACACAA
131 AAATACACAA
* *
34648765 ACATTATCT-CTCTGAAGTTGCAGTGGAGCAAGTTGAA
1 TC-TTATCTCCT-TGAAGTTGCAGTGGAGCAAATTGAA
34648802 ATTACCAACT
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
140 5 0.03
141 31 0.20
142 4 0.03
143 113 0.74
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (140 bp):
TCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
GCGGAGCAAACTAAACACAGCAAATTTAATTTCCCTGAAGTCGCAGCGGAACAGATTAAAGCCAC
AAATACACAA
Found at i:34650855 original size:38 final size:38
Alignment explanation
Indices: 34650812--34651275 Score: 271
Period size: 38 Copynumber: 11.0 Consensus size: 38
34650802 TTTCAAATTA
*
34650812 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACTGTGGTATATCCACTTAGCACCACGTT
*
34650850 ACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACTGTGGTATATCCACTTAGCACCACG-T--T
* * *
34650891 GAATCGATATATGGAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTAT--AACTGTGGTATATCCACTTAGCACCACGTT
* *
34650935 ACATGTTTAACTGTGATATATCCACTTAGCACCACGTTAATT
1 ACATGTATAACTGTGGTATATCCACTTAGCACCACG----TT
* * *
34650977 AATCGATATATGTAACTGTGGCATATCCACTTAACACCACGTT
1 -A-C-ATGTA--TAACTGTGGTATATCCACTTAGCACCACGTT
* * * * *
34651020 ACATGTTTAACCGTTGTATATCCACTTAGCACAACATTAAT
1 ACATGTATAACTGTGGTATATCCACTTAGCACCAC-GT--T
* *
34651061 GAATCGATATATGTAACTGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACTGTGGTATATCCACTTAGCACCACGTT
* *
34651105 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACTGTGGTATATCCACTTAGCACCACGTT
* * *
34651143 AATGAATTGATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 -A--CA-TG---TA--TAACTGTGGTATATCCACTTAGCACCACGTT
* *
34651190 ACATGTATCAATATGTGTAATCGTAGTATATCCACTTAGCAACACGTT
1 ACATGTAT--A-A-CTG---T-G--GTATATCCACTTAGCACCACGTT
* * *
34651238 ACACGTATAACCGTGGTATATCCACCTAGCACCACGTT
1 ACATGTATAACTGTGGTATATCCACTTAGCACCACGTT
34651276 TTTTCCATTC
Statistics
Matches: 332, Mismatches: 48, Indels: 92
0.70 0.10 0.19
Matches are distributed among these distances:
38 133 0.40
39 3 0.01
40 14 0.04
41 8 0.02
42 8 0.02
43 7 0.02
44 7 0.02
45 13 0.04
46 5 0.02
47 106 0.32
48 28 0.08
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (38 bp):
ACATGTATAACTGTGGTATATCCACTTAGCACCACGTT
Found at i:34650926 original size:85 final size:85
Alignment explanation
Indices: 34650819--34651195 Score: 637
Period size: 85 Copynumber: 4.4 Consensus size: 85
34650809 TTAACATGTA
* *
34650819 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
34650884 CGTTAATGAATCGATATATG
66 CGTTAATGAATCGATATATG
* * *
34650904 GAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGATATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
34650969 CGTTAATTAATCGATATATG
66 CGTTAATGAATCGATATATG
* * * *
34650989 TAACTGTGGCATATCCACTTAACACCACGTTACATGTTTAACCGTTGTATATCCACTTAGCACAA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
34651054 CATTAATGAATCGATATATG
66 CGTTAATGAATCGATATATG
*
34651074 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
34651139 CGTTAATGAATTGATATATG
66 CGTTAATGAATCGATATATG
34651159 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
34651196 ATCAATATGT
Statistics
Matches: 273, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 273 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCGATATATG
Found at i:34651015 original size:47 final size:46
Alignment explanation
Indices: 34650942--34651238 Score: 241
Period size: 47 Copynumber: 6.7 Consensus size: 46
34650932 GTTACATGTT
*
34650942 TAACTGTGATATATCCACTTAGCACCACGTTAATTAATCGATATATG
1 TAACTGTGGTATATCCACTTAGCACCACGTTAATT-ATCGATATATG
* * *
34650989 TAACTGTGGCATATCCACTTAACACCACG----TTA-C-ATGT-T-
1 TAACTGTGGTATATCCACTTAGCACCACGTTAATTATCGATATATG
* * * * *
34651027 TAACCGTTGTATATCCACTTAGCACAACATTAATGAATCGATATATG
1 TAACTGTGGTATATCCACTTAGCACCACGTTAAT-TATCGATATATG
* *
34651074 TAACTGTGGCATATCCACTTAGCACCACG----TTA-C-ATGT-T-
1 TAACTGTGGTATATCCACTTAGCACCACGTTAATTATCGATATATG
* * *
34651112 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATTGATATATG
1 TAACTGTGGTATATCCACTTAGCACCACGTTAAT-TATCGATATATG
* * * *
34651159 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACTGTGGTATATCCACTTAGCACCACGTTA-AT-TATCGATATATG
* *
34651207 TAA-TCGTAGTATATCCACTTAGCAACACGTTA
1 TAACT-GTGGTATATCCACTTAGCACCACGTTA
34651239 CACGTATAAC
Statistics
Matches: 197, Mismatches: 33, Indels: 39
0.73 0.12 0.14
Matches are distributed among these distances:
38 50 0.25
39 2 0.01
40 6 0.03
41 2 0.01
42 4 0.02
43 5 0.03
44 1 0.01
45 6 0.03
46 2 0.01
47 81 0.41
48 38 0.19
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (46 bp):
TAACTGTGGTATATCCACTTAGCACCACGTTAATTATCGATATATG
Found at i:34651228 original size:48 final size:48
Alignment explanation
Indices: 34651112--34651245 Score: 171
Period size: 48 Copynumber: 2.8 Consensus size: 48
34651102 GTTACATGTT
* * **
34651112 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATTGATATATG
1 TAACCGTAGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
34651159 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTAGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
34651207 TAATCGTAGTATATCCACTTAGCAACACGTTACACGTAT
1 TAACCGTAGTATATCCACTTAGCACCACGTTACATGTAT
34651246 AACCGTGGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
47 31 0.41
48 45 0.59
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (48 bp):
TAACCGTAGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:34651268 original size:133 final size:132
Alignment explanation
Indices: 34651027--34651275 Score: 356
Period size: 133 Copynumber: 1.9 Consensus size: 132
34651017 GTTACATGTT
* * * *
34651027 TAACCGTTGTATATCCACTTAGCACAACATTAATGAATCGATATATGTAACTGTGGCATATCCAC
1 TAACCGTGGCATATCCACTTAGCACAACATTAATGAATCAATATATGTAACTGTAGCATATCCAC
* * * *
34651092 TTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATTGATATA
66 TTAGCAACACGTTACACGTATAACCGTGGTATATCCACCTAGCACCACGTTAATGAATTGATATA
34651157 TG
131 TG
* * * * *
34651159 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAA-TCGTAGTATATCC
1 TAACCGTGGCATATCCACTTAGCACAACATTA-ATGAATCAATATATGTAACT-GTAGCATATCC
34651223 ACTTAGCAACACGTTACACGTATAACCGTGGTATATCCACCTAGCACCACGTT
64 ACTTAGCAACACGTTACACGTATAACCGTGGTATATCCACCTAGCACCACGTT
34651276 TTTTCCATTC
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
132 29 0.28
133 73 0.72
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (132 bp):
TAACCGTGGCATATCCACTTAGCACAACATTAATGAATCAATATATGTAACTGTAGCATATCCAC
TTAGCAACACGTTACACGTATAACCGTGGTATATCCACCTAGCACCACGTTAATGAATTGATATA
TG
Found at i:34656536 original size:38 final size:38
Alignment explanation
Indices: 34656493--34656953 Score: 188
Period size: 38 Copynumber: 10.9 Consensus size: 38
34656483 TTTCAAATTA
*
34656493 ACATGTATAACTGTGGCATATCCACTTAGCACCACATT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
* * * *
34656531 ACATGTTTAATCGTGGTATATCCACTTAGCACCACGTTAATGA
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC----AT-T
* * * *
34656574 ATCGATATATGCAACCATGACATATCCACTTA-CTACCACGTT
1 A-C-ATGTAT--AACCGTGGCATATCCACTTAGC-ACCACATT
* * ** *
34656616 ACATGTTTAACCATGATATATCCACTTAGCACCACCTTAATGA
1 ACATGTATAACCGTGGCATATCCACTTAGCACCA-C---AT-T
* *
34656659 ATCGATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACATT
* * * *
34656701 ACATGTTTAACCTTGGTATATCCACTTAGCACAACATTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACA-T--T
* *
34656742 GAATCGATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACATT
* * * *
34656786 ACATGTGTAATCGTGGTATATCCACTTAGCACCACGCTAATG
1 ACATGTATAACCGTGGCATATCCACTTAGCACCA--C--ATT
*
34656828 A-ATTGATATATGTAACCGTGGCATATCCACTTAACACCACGTTACATGT
1 ACA-TG---TA--TAACCGTGGCATATCCACTTAGCA-C-C---ACAT-T
* * *
34656877 ATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACATT
1 A-C---ATGTATAACCGTGGCATATCCACTTAGCACCACATT
* *
34656919 ACACGTATAACCGTGGTATATCCACTTAGCACCAC
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC
34656954 GTTTTTTTCC
Statistics
Matches: 318, Mismatches: 55, Indels: 100
0.67 0.12 0.21
Matches are distributed among these distances:
38 134 0.42
39 3 0.01
40 11 0.03
41 6 0.02
42 12 0.04
43 9 0.03
44 4 0.01
45 11 0.03
46 4 0.01
47 92 0.29
48 24 0.08
49 2 0.01
50 2 0.01
52 1 0.00
53 2 0.01
54 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
Found at i:34656612 original size:85 final size:85
Alignment explanation
Indices: 34656500--34656876 Score: 585
Period size: 85 Copynumber: 4.4 Consensus size: 85
34656490 TTAACATGTA
* * *
34656500 TAACTGTGGCATATCCACTTAGCACCACATTACATGTTTAATCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
34656565 CGTTAATGAATCGATATATG
66 CGTTAATGAATCGATATATG
* * * * *
34656585 CAACCATGACATATCCACTTA-CTACCACGTTACATGTTTAACCATGATATATCCACTTAGCACC
1 TAACCGTGGCATATCCACTTAGC-ACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACC
*
34656649 ACCTTAATGAATCGATATATG
65 ACGTTAATGAATCGATATATG
* *
34656670 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCTTGGTATATCCACTTAGCACAA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
34656735 CATTAATGAATCGATATATG
66 CGTTAATGAATCGATATATG
* *
34656755 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTGTAATCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
* *
34656820 CGCTAATGAATTGATATATG
66 CGTTAATGAATCGATATATG
*
34656840 TAACCGTGGCATATCCACTTAACACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
34656877 ATCAATATGT
Statistics
Matches: 266, Mismatches: 24, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
84 1 0.00
85 264 0.99
86 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCGATATATG
Found at i:34656905 original size:48 final size:48
Alignment explanation
Indices: 34656788--34656926 Score: 181
Period size: 48 Copynumber: 2.9 Consensus size: 48
34656778 ACCACGTTAC
* * **
34656788 ATGTGTAATCGTGGTATATCCACTTAGCACCACGCTA-ATGAATTGAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * * *
34656835 ATATGTAACCGTGGCATATCCACTTAACACCACGTTACATGTATCAAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
34656883 ATGTGTAATCGTGGTATATCCACTTAGCACCACATTACACGTAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTAT
34656927 AACCGTGGTA
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 32 0.42
48 45 0.58
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (48 bp):
ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:34659146 original size:16 final size:17
Alignment explanation
Indices: 34659121--34659160 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
34659111 TTGCGATCAT
34659121 TATTTTATTTA-TTA-A
1 TATTTTATTTACTTATA
34659136 TATTATTATTTACTTATA
1 TATT-TTATTTACTTATA
34659154 TATTTTA
1 TATTTTA
34659161 CTGCAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 7 0.32
17 6 0.27
18 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TATTTTATTTACTTATA
Found at i:34661265 original size:14 final size:14
Alignment explanation
Indices: 34661229--34661267 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
34661219 TTATTTCATT
*
34661229 GAAAATGACTTCCA
1 GAAAATGATTTCCA
34661243 GAAAATGATTTCTCA
1 GAAAATGATTTC-CA
34661258 -AAAATGATTT
1 GAAAATGATTT
34661268 AATTTTTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 21 0.91
15 2 0.09
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCA
Found at i:34664450 original size:13 final size:13
Alignment explanation
Indices: 34664434--34664459 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34664424 CTGGAGACAC
34664434 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
34664447 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
34664460 CACACGGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.23, T:0.38
Consensus pattern (13 bp):
GCCCGTGTCCTTT
Found at i:34665413 original size:40 final size:40
Alignment explanation
Indices: 34665354--34665480 Score: 191
Period size: 41 Copynumber: 3.1 Consensus size: 40
34665344 GCAAAAATTG
* *
34665354 TAAAACACAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGC
1 TAAAA-ACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* *
34665395 TAAAAACCGAGCATTAGCGGCGGTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
34665435 TAAAAACTAGAGTATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAAC-AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
34665476 TAAAA
1 TAAAA
34665481 GTCATATAAC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 39 0.49
41 40 0.51
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.21
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:34666120 original size:24 final size:24
Alignment explanation
Indices: 34666093--34666141 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
34666083 CGTATATTTG
34666093 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
34666117 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
34666141 T
1 T
34666142 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:34667279 original size:17 final size:17
Alignment explanation
Indices: 34667257--34667306 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
34667247 AAAATTTAGC
34667257 TACTCTTTTTCTCTCGT
1 TACTCTTTTTCTCTCGT
*
34667274 TACTCTTTTTCTCTCTT
1 TACTCTTTTTCTCTCGT
34667291 TACTCTTTTTCTCTCG
1 TACTCTTTTTCTCTCG
34667307 ATCCTTCGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.06, C:0.30, G:0.04, T:0.60
Consensus pattern (17 bp):
TACTCTTTTTCTCTCGT
Found at i:34671942 original size:42 final size:43
Alignment explanation
Indices: 34671896--34672028 Score: 178
Period size: 43 Copynumber: 3.1 Consensus size: 43
34671886 GTTTATATCT
* * *
34671896 TTTAGCGGCGTTGT-AAAAAAAGCGTCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTTCAAGAAAAGCGACGCTAAAGGTCATGGTC
*
34671938 TTTAGCGGCGTTTTCAGGAAAAGCGACGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTTCAAGAAAAGCGACGCTAAAGGTCATGGTC
** * * *
34671981 TTTAGCGATGTTTTCGAGAAAAGTGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTTCAAGAAAAGCGACGCTAAAGGTCATGGTC
34672024 TTTAG
1 TTTAG
34672029 TGACGGTTTT
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 13 0.16
43 67 0.84
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTTCAAGAAAAGCGACGCTAAAGGTCATGGTC
Found at i:34672468 original size:47 final size:47
Alignment explanation
Indices: 34672385--34672557 Score: 147
Period size: 47 Copynumber: 3.7 Consensus size: 47
34672375 CTCTTAGCCG
*
34672385 ATGCATGTCCCAAACACGTCTTACATTGGCTA-TCATCATTGAGGCCA
1 ATGCATGTCCCAAACACGTCTTACACTGGC-ACTCATCATTGAGGCCA
* **
34672432 ATGCATGTCCCAAACATGTCTTACACTGGCACTCATC-TCT-ACACCA
1 ATGCATGTCCCAAACACGTCTTACACTGGCACTCATCAT-TGAGGCCA
* ** * * * * *
34672478 ATGCCATGTCCCAGACGTGGTCTTACACAGGCACTCGT-AATGTGGCCG
1 ATG-CATGTCCCAAAC-ACGTCTTACACTGGCACTCATCATTGAGGCCA
** *
34672526 ATGCATGTCCCAGGCACATCTTACACTGGCAC
1 ATGCATGTCCCAAACACGTCTTACACTGGCAC
34672558 ACAAGTAATC
Statistics
Matches: 101, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
46 22 0.22
47 57 0.56
48 22 0.22
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (47 bp):
ATGCATGTCCCAAACACGTCTTACACTGGCACTCATCATTGAGGCCA
Found at i:34679980 original size:39 final size:39
Alignment explanation
Indices: 34679926--34680051 Score: 171
Period size: 39 Copynumber: 3.2 Consensus size: 39
34679916 TTCAGTGATG
* *
34679926 TATATCCGGATTTAGGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
34679965 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * * *
34680004 TATATCTGGACTTAAGGTCCGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
34680043 TATGTCCGG
1 TATATCCGG
34680052 GCTAAAGTCC
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:34680069 original size:39 final size:39
Alignment explanation
Indices: 34679926--34680089 Score: 161
Period size: 39 Copynumber: 4.2 Consensus size: 39
34679916 TTCAGTGATG
* * * *
34679926 TATATCCGGATTTAGGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * *
34679965 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * *
34680004 TATATCTGGACTTAAGGTCCGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * * * *
34680043 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGGAAT
34680082 TATA-CCGG
1 TATATCCGG
34680090 GTTTAAATTC
Statistics
Matches: 105, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
38 9 0.09
39 96 0.91
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:34691257 original size:46 final size:46
Alignment explanation
Indices: 34691204--34691376 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
34691194 TTGGGCATCC
* *
34691204 GAACTCGTTGAGGTGAGTCCGAGTTCATTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
* * *
34691250 GAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGTAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATG--TCT
* * * * * *
34691297 GAGCTCGTTGCGTTGAGTCCGAGTTCACTTATGTATGCGAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
*
34691343 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34691377 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
45 2 0.02
46 57 0.56
47 26 0.25
48 2 0.02
49 1 0.01
50 5 0.05
51 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
Found at i:34691356 original size:93 final size:93
Alignment explanation
Indices: 34691197--34691368 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
34691187 AGGATGTTTG
* * *
34691197 GGCATCCGAACTCGTTGAGGTGAGTCCGAGTTCATTTATGGATGCAAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGGTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
34691262 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * * * *
34691290 GGCATCTGAGCTCGTTGCGTTGAGTCCGAGTTCACTTATGTATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGGTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
34691355 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
34691369 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGGTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:34691931 original size:12 final size:12
Alignment explanation
Indices: 34691914--34691939 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34691904 GCTTGGTAAT
34691914 GATTAGCCATTG
1 GATTAGCCATTG
34691926 GATTAGCCATTG
1 GATTAGCCATTG
34691938 GA
1 GA
34691940 ATGGCTAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (12 bp):
GATTAGCCATTG
Found at i:34696669 original size:46 final size:44
Alignment explanation
Indices: 34696612--34696882 Score: 192
Period size: 46 Copynumber: 5.9 Consensus size: 44
34696602 AGGATGTTTG
*
34696612 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGAT
1 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-TGAT
* * *** *
34696657 GGCATGTTGAACTCGTCGAGTTGAGT-CGAGTTCGAGAGATGTAACT
1 GGCAT-TCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGTGA-T
* *
34696703 AGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GAT
1 -GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTGAT
* * * * *
34696747 -GCAAATGTCCAAACTCGTTGAGTTGAGTCTGAGTTC-GTGAGATGTAACT
1 GGC--AT-T-CGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGTGA-T
* *
34696796 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATG-GAT
1 -GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTGAT
* * *
34696840 GCGAACACTCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATG
1 G-G--CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
34696883 GGCGGGTTAC
Statistics
Matches: 174, Mismatches: 33, Indels: 37
0.71 0.14 0.15
Matches are distributed among these distances:
42 2 0.01
43 1 0.01
44 5 0.03
45 17 0.10
46 102 0.59
47 40 0.23
48 2 0.01
49 3 0.02
51 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (44 bp):
GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTGAT
Found at i:34696825 original size:93 final size:91
Alignment explanation
Indices: 34696612--34696876 Score: 365
Period size: 93 Copynumber: 2.9 Consensus size: 91
34696602 AGGATGTTTG
* *
34696612 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGATGGC--ATGTTGAACTCGTCG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG--GAT-GCAAATGTCGAACTCGTTG
34696675 AGTTGAGTCGAGTTCGAGAGATGTAACTA
63 AGTTGAGTCGAGTTCGAGAGATGTAACTA
* *
34696704 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGT-CGAACTCGTTGAG
*
34696769 TTGAGTCTGAGTTCGTGAGATGTAACTA
65 TTGAGTC-GAGTTCGAGAGATGTAACTA
* * *
34696797 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACA-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AA-ATGTCGAACTCGTTGA
34696861 GTTGAGTCCGAGTTCG
64 GTTGAGT-CGAGTTCG
34696877 CTTATGGGCG
Statistics
Matches: 156, Mismatches: 10, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
89 2 0.01
90 3 0.02
91 4 0.03
92 56 0.36
93 86 0.55
94 4 0.03
95 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (91 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCGAACTCGTTGAGT
TGAGTCGAGTTCGAGAGATGTAACTA
Found at i:34707595 original size:20 final size:20
Alignment explanation
Indices: 34707570--34707610 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
34707560 GCAGTAAGTG
34707570 TTAGTTTGAAATTGATATGA
1 TTAGTTTGAAATTGATATGA
34707590 TTAGTTTGAAATTGATATGA
1 TTAGTTTGAAATTGATATGA
34707610 T
1 T
34707611 ATCTGTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (20 bp):
TTAGTTTGAAATTGATATGA
Found at i:34714375 original size:40 final size:40
Alignment explanation
Indices: 34714225--34714376 Score: 200
Period size: 40 Copynumber: 3.8 Consensus size: 40
34714215 CATTTGAATG
* * * *
34714225 ATATCCGGGCTAAGTCCCGAAGTCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
34714265 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
34714305 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
34714345 ATA-CTCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATC-CGGGCTAAGACCCGAAGGCATTTGTGC
34714377 TTGTGGTTAT
Statistics
Matches: 101, Mismatches: 9, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 97 0.96
41 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:34714388 original size:80 final size:80
Alignment explanation
Indices: 34714225--34714396 Score: 197
Period size: 80 Copynumber: 2.2 Consensus size: 80
34714215 CATTTGAATG
* * * * *
34714225 ATATCCGGGCTAAGTCCCGAAGTCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
34714290 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
34714305 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATA-CTCGGGTTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATATC-CGGGCTAAGACCCGAAGG
** *
34714368 CAATTGTGCTTGTGGTT
64 CAATTGTGCGAGTGGAT
34714385 ATATCC-GGCTAA
1 ATATCCGGGCTAA
34714397 ATTCCGAAGA
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 7 0.09
80 69 0.88
81 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:34717168 original size:21 final size:21
Alignment explanation
Indices: 34717144--34717185 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
34717134 ATGCTGGAAT
34717144 TGTATCCGGGCTTAAAGACCC
1 TGTATCCGGGCTTAAAGACCC
34717165 TGTATCCGGGCTTAAAGACCC
1 TGTATCCGGGCTTAAAGACCC
34717186 GCAGGCTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (21 bp):
TGTATCCGGGCTTAAAGACCC
Found at i:34717179 original size:61 final size:61
Alignment explanation
Indices: 34717104--34717225 Score: 217
Period size: 61 Copynumber: 2.0 Consensus size: 61
34717094 TATTTGGAAT
* * *
34717104 TGTATCTGGGCTTAAAGACCCGTAGGCTATATGCTGGAATTGTATCCGGGCTTAAAGACCC
1 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCATAAAGACCC
34717165 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCATAAAGACCC
1 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCATAAAGACCC
34717226 GCAGGCTTCG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (61 bp):
TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTGTATCCGGGCATAAAGACCC
Found at i:34717221 original size:40 final size:40
Alignment explanation
Indices: 34717165--34717250 Score: 129
Period size: 40 Copynumber: 2.1 Consensus size: 40
34717155 TTAAAGACCC
*
34717165 TGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
1 TGTATCCGGGCATAAAGACCCGCAGGCT-TCATGCTGGAAT
*
34717205 TGTATCCGGGCATAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCATAAAGACCCGCAGGCTTCATGCTGGAAT
*
34717245 GGTATC
1 TGTATC
34717251 TGGGTTAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
39 1 0.02
40 41 0.98
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TGTATCCGGGCATAAAGACCCGCAGGCTTCATGCTGGAAT
Found at i:34719228 original size:61 final size:61
Alignment explanation
Indices: 34719152--34719298 Score: 224
Period size: 61 Copynumber: 2.4 Consensus size: 61
34719142 TCATAAAAAG
* * *
34719152 GATTTAGCCTGGACTGGTAATCTTGACTAATCTCTATTGAGTATATATATATTAGAGACAA
1 GATTTAGCCTAGACTGGTAATCCTGACTAAGCTCTATTGAGTATATATATATTAGAGACAA
* *
34719213 GATTTAGCCTAGACTGGTAATCCTGACTAAGCTCTATTGAGTATATATATATTGGAGACAG
1 GATTTAGCCTAGACTGGTAATCCTGACTAAGCTCTATTGAGTATATATATATTAGAGACAA
*
34719274 GATTTAG-CTAGGACTAGTAATCCTG
1 GATTTAGCCTA-GACTGGTAATCCTG
34719299 TTGTATATAT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
60 3 0.04
61 76 0.96
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (61 bp):
GATTTAGCCTAGACTGGTAATCCTGACTAAGCTCTATTGAGTATATATATATTAGAGACAA
Found at i:34723999 original size:30 final size:30
Alignment explanation
Indices: 34723941--34724001 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
34723931 TTCCCGAGCC
* *
34723941 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
* *
34723971 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
34724001 T
1 T
34724002 GCATTAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATACAAAAGTT
Found at i:34727863 original size:27 final size:27
Alignment explanation
Indices: 34727832--34728009 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
34727822 TAAATTGTAC
*
34727832 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
34727859 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
34727885 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
34727913 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
34727940 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
34727968 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
34727995 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34728010 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:34727893 original size:54 final size:55
Alignment explanation
Indices: 34727832--34728009 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
34727822 TAAATTGTAC
* **
34727832 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
34727887 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
34727940 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
34727995 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34728010 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:34729757 original size:49 final size:48
Alignment explanation
Indices: 34729700--34729910 Score: 193
Period size: 49 Copynumber: 4.5 Consensus size: 48
34729690 AGTTAATGCT
*
34729700 ATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGATACC
1 ATGTCCCAGACAGGTCTTACACTGACTCTCATA-ATCGAGGCCGATACC
* * * * * *
34729749 ATGTCCCAGATAGGTCTTACATTGGCTCTCATCTATCG-GTGTCGATGCC
1 ATGTCCCAGACAGGTCTTACACTGACTCTCAT-AATCGAG-GCCGATACC
* * * * *
34729798 ATGTCCCAGACAGGTCTTACACTGA--CACA-AGTC-AAGTCGATGCC
1 ATGTCCCAGACAGGTCTTACACTGACTCTCATAATCGAGGCCGATACC
* * * *
34729842 ATGTCCCAGACATGTCTTACACTGGCTCTCATAAT-GTGGCCGA-AGC
1 ATGTCCCAGACAGGTCTTACACTGACTCTCATAATCGAGGCCGATACC
*
34729888 ATGTCCCAGACATGTCTTACACT
1 ATGTCCCAGACAGGTCTTACACT
34729911 AGCACACATA
Statistics
Matches: 132, Mismatches: 23, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
44 32 0.24
45 2 0.02
46 27 0.20
47 9 0.07
48 1 0.01
49 61 0.46
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGTCCCAGACAGGTCTTACACTGACTCTCATAATCGAGGCCGATACC
Found at i:34738226 original size:38 final size:38
Alignment explanation
Indices: 34738173--34738315 Score: 160
Period size: 38 Copynumber: 3.5 Consensus size: 38
34738163 GATACACATG
* *
34738173 ACGTGATGCTGAGTGGATATACCACGGTTAAACATATA
1 ACGTGGTGCTAAGTGGATATACCACGGTTAAACATATA
* *
34738211 ACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTA
1 ACGTGGTGCTAAGTGGATATACCACGGTT--A-A-A--CA-T-A-TA
*
34738258 ACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTA
1 ACGTGGTGCTAAGTGGATATACCACGGTTAAACATATA
34738296 ACGTGGTGCTAAGTGGATAT
1 ACGTGGTGCTAAGTGGATAT
34738316 GGCATGGTTA
Statistics
Matches: 89, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
38 48 0.54
40 2 0.02
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 2 0.02
46 1 0.01
47 30 0.34
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (38 bp):
ACGTGGTGCTAAGTGGATATACCACGGTTAAACATATA
Found at i:34738298 original size:85 final size:86
Alignment explanation
Indices: 34738086--34738325 Score: 311
Period size: 86 Copynumber: 2.8 Consensus size: 86
34738076 AGAATGGAAA
* * ** * * *
34738086 AACGTGGTGCTAAGTGGATATAGCATGGTTATTCGTGTAACGTGGTACTAAGTGGATATACCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
* *
34738151 ATTCCAAATATTGATACACAT
66 GTTACAAATATTGATACACAT
* * * *
34738172 GACGTGATGCTGAGTGGATATACCACGGTTAAACATATAACGTGGTGCTAAGTGGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
* * *
34738237 GTTACATATATTGATTCA-TT
66 GTTACAAATATTGATACACAT
* *
34738257 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGGCATG
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
34738322 GTTA
66 GTTA
34738326 TACATGTTAA
Statistics
Matches: 132, Mismatches: 22, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
85 64 0.48
86 68 0.52
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (86 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
GTTACAAATATTGATACACAT
Found at i:34740194 original size:29 final size:28
Alignment explanation
Indices: 34740146--34740218 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 28
34740136 TCATGAGATT
*
34740146 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
*
34740176 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
34740203 TGGCACTAAGTGTGCG
1 -GGCACTAAGTGTGCG
34740219 CGGTTGATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
27 5 0.13
29 33 0.87
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:34740490 original size:174 final size:175
Alignment explanation
Indices: 34740176--34740505 Score: 556
Period size: 174 Copynumber: 1.9 Consensus size: 175
34740166 AAATTGTACA
* *
34740176 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
34740241 TGTGCGAACCCAATATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTC
66 CGTGCGAACCC-ATATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTC
*
34740306 GATTTTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
130 AATTTTGGACAGCGG-AAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
34740353 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
34740418 CGTGC-AACCC-TATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCA
66 CGTGCGAACCCATATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCA
34740481 ATTTTGGACAGCGGAAAAGGTAAGT
131 ATTTTGGACAGCGGAAAAGGTAAGT
34740506 ACCTTGAGTT
Statistics
Matches: 145, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
173 11 0.08
174 65 0.45
176 5 0.03
177 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (175 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
CGTGCGAACCCATATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCA
ATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:34745747 original size:93 final size:93
Alignment explanation
Indices: 34745578--34745749 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
34745568 GGATGGTTGA
* *** *
34745578 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
34745643 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * ** *
34745671 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
*
34745736 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
34745750 CTTATGGGCG
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34749162 original size:30 final size:30
Alignment explanation
Indices: 34749127--34749186 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
34749117 ATTTAATACG
*
34749127 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
34749157 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
34749187 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:34759016 original size:48 final size:49
Alignment explanation
Indices: 34758933--34759066 Score: 177
Period size: 48 Copynumber: 2.8 Consensus size: 49
34758923 CGGTTATATG
34758933 TGTAACGTGGTGCTAAGTGGATATACCA-CGATTACACATATTGATACA
1 TGTAACGTGGTGCTAAGTGGATATACCACCGATTACACATATTGATACA
* * * * *
34758981 TGTAACGTGGTACTAAGTGGTTATGCCACCG-TTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACCGATTACACATATTGATACA
* *
34759029 T-TAACGTGGTGCTAGGTGGATATACCA-CGATTAAACAT
1 TGTAACGTGGTGCTAAGTGGATATACCACCGATTACACAT
34759067 GTAATGTTGT
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
46 2 0.03
47 28 0.38
48 41 0.56
49 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (49 bp):
TGTAACGTGGTGCTAAGTGGATATACCACCGATTACACATATTGATACA
Found at i:34768607 original size:43 final size:43
Alignment explanation
Indices: 34768550--34768652 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
34768540 ATGCCTCTAT
* * * *
34768550 CCAGACAGGGTCTTACACGAAATC-GATTAACGATGCCAATGTC
1 CCAGACATGGTCTTACACGAAATCTCAAT-ACAATGCCAATGTC
* * *
34768593 CTAGACATGGTCTTACATGTAATCTCAATACAATGCCAATGTC
1 CCAGACATGGTCTTACACGAAATCTCAATACAATGCCAATGTC
34768636 CCAGACATGGTCTTACA
1 CCAGACATGGTCTTACA
34768653 TGTAATCACA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 49 0.96
44 2 0.04
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
CCAGACATGGTCTTACACGAAATCTCAATACAATGCCAATGTC
Found at i:34773477 original size:43 final size:44
Alignment explanation
Indices: 34773413--34773499 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 44
34773403 ATCACATGTA
* * *
34773413 TCGCATCCATTATGAATTCGGACC-AGTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
34773456 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
34773500 CTCATACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 22 0.55
44 18 0.45
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
Found at i:34783530 original size:42 final size:41
Alignment explanation
Indices: 34783388--34783534 Score: 150
Period size: 42 Copynumber: 3.5 Consensus size: 41
34783378 GTACCAATGG
* *
34783388 CATATCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACA-CGAATCTCATATCGATGC
* * * *
34783430 CAATAGCCCATAAATGGTCTTACACGATTCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACACGAATCTCATATCGATGC
* * * * * *
34783472 TATGTCCCAAACATGGTCTTACACGAAATCTTATAACGATGC
1 CATATCCCAGATATGGTCTTACACG-AATCTCATATCGATGC
*
34783514 CATATCCCTGATATGGTCTTA
1 CATATCCCAGATATGGTCTTA
34783535 TACATAAACT
Statistics
Matches: 84, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
41 20 0.24
42 45 0.54
43 19 0.23
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (41 bp):
CATATCCCAGATATGGTCTTACACGAATCTCATATCGATGC
Found at i:34786079 original size:34 final size:33
Alignment explanation
Indices: 34786035--34786127 Score: 89
Period size: 34 Copynumber: 2.8 Consensus size: 33
34786025 TTTCAGTTAC
* *
34786035 GGCCTTAGCCCATATCAGTAACAGTAGCAGTCTA
1 GGCCTAAGCCCATATCAGTAACAGTAGCAGT-GA
* * * * * *
34786069 GGCCTGAGCCCATTTCAATAATAGTATCAGTGG
1 GGCCTAAGCCCATATCAGTAACAGTAGCAGTGA
34786102 GGCCTAAGCCCATTAT-AGTAACAGTA
1 GGCCTAAGCCCA-TATCAGTAACAGTA
34786128 CAATATGCAA
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
33 19 0.40
34 28 0.60
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.25
Consensus pattern (33 bp):
GGCCTAAGCCCATATCAGTAACAGTAGCAGTGA
Found at i:34793900 original size:27 final size:27
Alignment explanation
Indices: 34793733--34793910 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
34793723 TAAATTGTAC
*
34793733 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
34793760 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
34793786 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
34793814 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
34793842 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
34793869 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
34793896 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34793911 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:34793901 original size:82 final size:81
Alignment explanation
Indices: 34793730--34793910 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
34793720 GATTAAATTG
* * * *
34793730 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34793795 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
34793811 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34793875 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
34793893 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34793911 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:34801901 original size:27 final size:27
Alignment explanation
Indices: 34801734--34801911 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
34801724 TAAATTGTAC
*
34801734 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
34801761 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
34801787 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
34801815 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
34801843 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
34801870 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
34801897 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34801912 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:34801902 original size:82 final size:81
Alignment explanation
Indices: 34801731--34801911 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
34801721 GATTAAATTG
* * * *
34801731 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34801796 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
34801812 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34801876 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
34801894 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34801912 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:34805486 original size:21 final size:21
Alignment explanation
Indices: 34805461--34805502 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
34805451 CCGGCCATCA
*
34805461 CACTTTAAATTCCCCAAATTT
1 CACTTTAAATACCCCAAATTT
*
34805482 CACTTTAAATACCCCCAATTT
1 CACTTTAAATACCCCAAATTT
34805503 AAGATGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36
Consensus pattern (21 bp):
CACTTTAAATACCCCAAATTT
Found at i:34813471 original size:35 final size:35
Alignment explanation
Indices: 34813432--34813504 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
34813422 ACACATTCTT
34813432 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
*
34813467 TATTCTCGTCAGATTAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
34813502 TAT
1 TAT
34813505 CACATACTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:34818546 original size:21 final size:21
Alignment explanation
Indices: 34818509--34818548 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
34818499 GTTACATTTG
*
34818509 ATTTTTATATCAATATTTTAT
1 ATTTTTATATAAATATTTTAT
34818530 ATTTTTAT-TAAATTATTTT
1 ATTTTTATATAAA-TATTTT
34818549 TAATGGTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTTTTATATAAATATTTTAT
Found at i:34819550 original size:20 final size:20
Alignment explanation
Indices: 34819527--34819564 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
34819517 CGCTCTGGCG
34819527 ACCACAGTGATGCTCCAGCA
1 ACCACAGTGATGCTCCAGCA
*
34819547 ACCATAGTGATGCTCCAG
1 ACCACAGTGATGCTCCAG
34819565 ATTCGACCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.18
Consensus pattern (20 bp):
ACCACAGTGATGCTCCAGCA
Found at i:34832592 original size:41 final size:41
Alignment explanation
Indices: 34832478--34832606 Score: 154
Period size: 41 Copynumber: 3.1 Consensus size: 41
34832468 AGTGATATTA
* * *
34832478 AGGCTT-TATGCCGAGCAGGCTTTGTGCCAGTGTATAATATC
1 AGGCTTAT-TGCCCAGCAGGCTTTGTGCCGGTGTATTATATC
* * *
34832519 AGGCTTATTACCTAGCAGGCTTTATGCCGGTGTATTATATC
1 AGGCTTATTGCCCAGCAGGCTTTGTGCCGGTGTATTATATC
* *
34832560 AGGCTTATTGCCCAGCAGGCTCTGTGCTGGTGTATTATA-C
1 AGGCTTATTGCCCAGCAGGCTTTGTGCCGGTGTATTATATC
34832600 TAGGCTT
1 -AGGCTT
34832607 TATGCCTAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
40 1 0.01
41 74 0.97
42 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (41 bp):
AGGCTTATTGCCCAGCAGGCTTTGTGCCGGTGTATTATATC
Found at i:34840169 original size:41 final size:41
Alignment explanation
Indices: 34840054--34840189 Score: 159
Period size: 41 Copynumber: 3.3 Consensus size: 41
34840044 TGATATTCGA
* * *
34840054 GCTTTATGCCTAGCAGGTTTTGTGCCAGTGTATAATATCAG
1 GCTTTATGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAG
* * *
34840095 GC-TTATTACCTAGCAGGCTTTATGCCGGTGTATTTTATCAG
1 GCTTTA-TGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAG
* * *
34840136 GCTTTTTGCCTAGCAGACTCTGTGCCGGTGTATTATA-CTAG
1 GCTTTATGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AG
34840177 GCTTTATGCCTAG
1 GCTTTATGCCTAG
34840190 TAAATTTTAT
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
40 4 0.05
41 73 0.92
42 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.38
Consensus pattern (41 bp):
GCTTTATGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAG
Found at i:34841991 original size:14 final size:14
Alignment explanation
Indices: 34841972--34842005 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
34841962 TATCCTCTCA
34841972 TTGTAAACTTTAT-T
1 TTGTAAACTTT-TCT
34841986 TTGTAAACTTTTCT
1 TTGTAAACTTTTCT
34842000 TTGTAA
1 TTGTAA
34842006 TAATATAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.05
14 18 0.95
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.56
Consensus pattern (14 bp):
TTGTAAACTTTTCT
Done.