Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 111 of 253
Found at i:34845648 original size:18 final size:18
Alignment explanation
Indices: 34845617--34845654 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
34845607 AAATAATGTT
34845617 ATATTTGTTATTCCTAAA
1 ATATTTGTTATTCCTAAA
*
34845635 ATATTATGTT-TTCCTGAA
1 ATATT-TGTTATTCCTAAA
34845653 AT
1 AT
34845655 GCATGGAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.50
Consensus pattern (18 bp):
ATATTTGTTATTCCTAAA
Found at i:34858067 original size:40 final size:40
Alignment explanation
Indices: 34857997--34858214 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
34857987 CAACCAAGTA
* *
34857997 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGACATAG-TAACTCGCACAAATG
34858036 CCTTCGGGACTTAGCCCGGACATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGACATAGTAACTCGCACAAATG
* * *
34858076 CCTTCGGGACTTAGCCCAGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGACATAGTAACTCGCACAAATG
* * *
34858116 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGACA-TAGTAACTCGCACAAATG
* *
34858156 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGACA-TAGTAACTCGCACAAATG
*
34858196 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34858215 TTATCATCCG
Statistics
Matches: 165, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 17 0.10
40 146 0.88
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGACATAGTAACTCGCACAAATG
Found at i:34864648 original size:40 final size:39
Alignment explanation
Indices: 34864578--34864794 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 39
34864568 CAACCAAGTA
* *
34864578 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAG-TAACTCGCACAAATG
34864617 CCTTCGGGACTTAGCCCGGACATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
34864657 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
* *
34864697 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
* *
34864737 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
34864777 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34864795 TTATCATCCG
Statistics
Matches: 170, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
39 28 0.16
40 142 0.84
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
Found at i:34867276 original size:20 final size:20
Alignment explanation
Indices: 34867251--34867289 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
34867241 ACGAATTTAA
34867251 TTATTTCACATA-TTTACAAC
1 TTATTTCACA-ACTTTACAAC
*
34867271 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
34867290 AATAGCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:34869094 original size:39 final size:40
Alignment explanation
Indices: 34869049--34869214 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
34869039 CGGGGTTTAG
* * *
34869049 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
34869088 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
34869128 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * *
34869168 CCGGATGTAGTCGCTTAGCA-AAA-GCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
34869207 CCGGATAT
1 CCGGATAT
34869215 CATTCGAGTA
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
39 36 0.33
40 67 0.62
41 5 0.05
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:34869119 original size:40 final size:39
Alignment explanation
Indices: 34869072--34869214 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 39
34869062 CTCGCACAAG
* * * *
34869072 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCA-AAAT
34869112 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCA-AAAT
* *
34869152 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCAAAA-
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCAAAAT
34869191 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
34869215 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
39 21 0.23
40 65 0.71
41 5 0.05
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCAAAAT
Found at i:34870468 original size:37 final size:38
Alignment explanation
Indices: 34870400--34870474 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
34870390 CAAGAACTCC
34870400 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
34870438 TTCCTCCTTCCTTAGAATTTTCGGCC-AAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
34870475 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 11 0.30
38 26 0.70
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:34876614 original size:27 final size:27
Alignment explanation
Indices: 34876447--34876624 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
34876437 TAAATTGTAC
*
34876447 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
34876474 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
34876500 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
34876528 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
34876556 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
34876583 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
34876610 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34876625 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:34876615 original size:82 final size:81
Alignment explanation
Indices: 34876444--34876624 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
34876434 GATTAAATTG
* * * *
34876444 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34876509 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
34876525 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34876589 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
34876607 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34876625 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:34884619 original size:27 final size:27
Alignment explanation
Indices: 34884452--34884629 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
34884442 TAAATTGTAC
*
34884452 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
34884479 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
34884505 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
34884533 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
34884561 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
34884588 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
34884615 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34884630 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:34884620 original size:82 final size:81
Alignment explanation
Indices: 34884449--34884629 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
34884439 GATTAAATTG
* * * *
34884449 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34884514 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
34884530 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34884594 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
34884612 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34884630 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:34894033 original size:13 final size:13
Alignment explanation
Indices: 34894015--34894040 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34894005 ATATTATCAT
34894015 TATTTTATGTTAA
1 TATTTTATGTTAA
34894028 TATTTTATGTTAA
1 TATTTTATGTTAA
34894041 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:34895719 original size:39 final size:40
Alignment explanation
Indices: 34895552--34895767 Score: 323
Period size: 40 Copynumber: 5.5 Consensus size: 40
34895542 GGATGATAAT
*
34895552 CGGGCTAAGTCCCGAAGGTAATTGTGCTAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATATC
34895592 CGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATATC
*
34895632 CGGGCTAAGTCCCGAAGACAATT-TGCTAGTTACTATATATC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTAC--TATATC
* *
34895673 CGGGCTAAGTGCCAAAGGCAATTGTGCTAGTTA-TATATC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATATC
* *
34895712 TGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTGC-ATATC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATATC
*
34895751 C-GGCTAATTCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
34895768 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 11, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
38 15 0.09
39 50 0.31
40 61 0.38
41 26 0.16
42 9 0.06
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATATC
Found at i:34902292 original size:13 final size:13
Alignment explanation
Indices: 34902274--34902299 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34902264 ATATTATAAT
34902274 TATTTTATGTTAA
1 TATTTTATGTTAA
34902287 TATTTTATGTTAA
1 TATTTTATGTTAA
34902300 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:34903866 original size:40 final size:40
Alignment explanation
Indices: 34903811--34904028 Score: 393
Period size: 40 Copynumber: 5.5 Consensus size: 40
34903801 CGGATGATAA
34903811 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
34903851 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
*
34903891 CCGGGCTAAGTCCCGAAGACAATTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
*
34903931 CCGGGCTAAGTGCCGAAGGCAATTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
*
34903971 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
*
34904011 CC-GGCTAATTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
34904029 TACTTGGGTT
Statistics
Matches: 172, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 15 0.09
40 157 0.91
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
Found at i:34907111 original size:13 final size:13
Alignment explanation
Indices: 34907093--34907119 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34907083 CAACTAAATG
34907093 GTAGAAATAGGTA
1 GTAGAAATAGGTA
34907106 GTAGAAATAGGTA
1 GTAGAAATAGGTA
34907119 G
1 G
34907120 ATCTTGTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22
Consensus pattern (13 bp):
GTAGAAATAGGTA
Found at i:34911198 original size:40 final size:40
Alignment explanation
Indices: 34911154--34911340 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
34911144 ATTTGATGTG
*
34911154 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
*
34911194 TGTATCCGGGTTTAAAGACCCGCAGGCTATATACTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
*
34911234 TGTATCCGGGTTTAGAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* * *
34911274 TGTATCTGGGTTTAAAGATCCGCAGGCT-TCGTGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
* * *
34911314 GGAATCCGGG-TTAAAGACCCGTAGGCT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT
34911341 CGTGTTAGAA
Statistics
Matches: 133, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.12
40 117 0.88
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
Found at i:34918960 original size:40 final size:40
Alignment explanation
Indices: 34918916--34919102 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
34918906 ATTTTATTTG
*
34918916 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* *
34918956 TGTATCTGGGTTTAAAGACCCGCAGGCTATATGCTAGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* *
34918996 TGTATCCGGGTTTAGAGACCCGCCGGCTATATGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
* *
34919036 TGTAACCGGGTTTAAAGACCCGCAGGCT-TCGTGCTGGAAT
1 TGTATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
* * *
34919076 GGAATCCGGG-TTAAAGACCCGTAGGCT
1 TGTATCCGGGTTTAAAGACCCGCAGGCT
34919103 CGTGTTAGAA
Statistics
Matches: 131, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 17 0.13
40 114 0.87
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TGTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAAT
Found at i:34920582 original size:42 final size:41
Alignment explanation
Indices: 34920478--34920610 Score: 117
Period size: 42 Copynumber: 3.2 Consensus size: 41
34920468 TATCCTAGAT
*
34920478 ATGGTCTTACATGGGATCTCATATCGATGCCAATAG-CCCA-AC
1 ATGGTCTTACAT-GAATCTCATATCGATG-CAAT-GTCCCAGAC
* * * *
34920520 TATTGTCTTACACGATTCTCATATCGATGCGATGTCCCAGAC
1 -ATGGTCTTACATGAATCTCATATCGATGCAATGTCCCAGAC
* * * * *
34920562 ATGGTCTTACATGAAATCTCAAAACGATGCCATATCCCAGAT
1 ATGGTCTTACATG-AATCTCATATCGATGCAATGTCCCAGAC
34920604 ATGGTCT
1 ATGGTCT
34920611 AACACATAAA
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
40 1 0.01
41 18 0.24
42 45 0.61
43 10 0.14
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (41 bp):
ATGGTCTTACATGAATCTCATATCGATGCAATGTCCCAGAC
Found at i:34922482 original size:61 final size:59
Alignment explanation
Indices: 34922408--34922550 Score: 205
Period size: 61 Copynumber: 2.4 Consensus size: 59
34922398 GTCATAAAAC
* * *
34922408 GGATTTAGTCTGGACTAGTAATCCTAACTAAGCTTTATTGAGTATATATATATTGGAGATA
1 GGATTTAGCCTGGACTAGTAATCCTAACTAAGCTCTATTGAG--TATATATATTGCAGATA
*
34922469 GGATTTAGCCTGGACTAGTAATCCTGACTAAGCTCTATTGAGTATATATATTGCAGATA
1 GGATTTAGCCTGGACTAGTAATCCTAACTAAGCTCTATTGAGTATATATATTGCAGATA
* * *
34922528 GAATTTAGCTTGGACTGGTAATC
1 GGATTTAGCCTGGACTAGTAATC
34922551 TGTTGTATAA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
59 36 0.48
61 39 0.52
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.36
Consensus pattern (59 bp):
GGATTTAGCCTGGACTAGTAATCCTAACTAAGCTCTATTGAGTATATATATTGCAGATA
Found at i:34922549 original size:59 final size:60
Alignment explanation
Indices: 34922410--34922550 Score: 196
Period size: 59 Copynumber: 2.4 Consensus size: 60
34922400 CATAAAACGG
* * *
34922410 ATTTAG-TCTGGACTAGTAATCCTAACTAAGCTTTATTGAGTATATATATATTGGAGATAGG
1 ATTTAGCT-TGGACTAGTAATCCTAACTAAGCTCTATTGAG-ATATATATATTGCAGATAGA
* *
34922471 ATTTAGCCTGGACTAGTAATCCTGACTAAGCTCTATTGAG-TATATATATTGCAGATAGA
1 ATTTAGCTTGGACTAGTAATCCTAACTAAGCTCTATTGAGATATATATATTGCAGATAGA
*
34922530 ATTTAGCTTGGACTGGTAATC
1 ATTTAGCTTGGACTAGTAATC
34922551 TGTTGTATAA
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
59 36 0.50
61 36 0.50
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (60 bp):
ATTTAGCTTGGACTAGTAATCCTAACTAAGCTCTATTGAGATATATATATTGCAGATAGA
Found at i:34936103 original size:10 final size:9
Alignment explanation
Indices: 34936085--34936118 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
34936075 CTAGGCCACG
*
34936085 ATGGGCCAA
1 ATGGGCCCA
34936094 ATGGGCCCA
1 ATGGGCCCA
*
34936103 ATGGGCCCC
1 ATGGGCCCA
34936112 ATGGGCC
1 ATGGGCC
34936119 AGCTTGTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.21, C:0.32, G:0.35, T:0.12
Consensus pattern (9 bp):
ATGGGCCCA
Found at i:34940251 original size:40 final size:40
Alignment explanation
Indices: 34940202--34940409 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
34940192 TCTTCGGAAT
* ** *
34940202 TTAG-CCGGGTATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGGTATAACAACTCGCACAAATGCCTTCGGGTC
* *
34940241 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGGTATAACAACTCGCACAAATGCCTTCGGGTC
* *
34940281 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGGTATAACAACTCGCACAAATGCCTTCGGGTC
* * * *
34940321 TTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGGTATAA-CAACTCGCACAAATGCCTTCGGGTC
* *
34940361 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGGTATAACAACTCGCACAAATGCCTTCGGGTC
34940401 TTAGCCCGG
1 TTAGCCCGG
34940410 ATATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 4 0.03
40 141 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGGTATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:34947047 original size:17 final size:16
Alignment explanation
Indices: 34947022--34947057 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
34947012 TTGTAACACC
*
34947022 CCGACCCGAGACCGACA
1 CCGAACCGAGA-CGACA
34947039 CCGAACCGAGACGACA
1 CCGAACCGAGACGACA
34947055 CCG
1 CCG
34947058 GAGTCGGACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.31, C:0.44, G:0.25, T:0.00
Consensus pattern (16 bp):
CCGAACCGAGACGACA
Found at i:34948507 original size:40 final size:40
Alignment explanation
Indices: 34948409--34948671 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
34948399 TCCTCGTTCA
* * * * *
34948409 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
34948448 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
34948488 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
34948528 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
34948568 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
34948608 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
34948648 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34948672 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:34950364 original size:36 final size:36
Alignment explanation
Indices: 34950317--34950394 Score: 149
Period size: 36 Copynumber: 2.2 Consensus size: 36
34950307 GTTTCGCAAC
34950317 TCCTTCACTTCACGAGCTAGGATACGCATCGGTTCT
1 TCCTTCACTTCACGAGCTAGGATACGCATCGGTTCT
34950353 TCCTTCACTTCACGAGCTAGGATACGCATCGGTTCT
1 TCCTTCACTTCACGAGCTAGGATACGCATCGGTTCT
34950389 T-CTTCA
1 TCCTTCA
34950395 TAGCTCATGT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 5 0.12
36 37 0.88
ACGTcount: A:0.19, C:0.31, G:0.18, T:0.32
Consensus pattern (36 bp):
TCCTTCACTTCACGAGCTAGGATACGCATCGGTTCT
Found at i:34959077 original size:46 final size:46
Alignment explanation
Indices: 34959021--34959193 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
34959011 TGGTTGAGCA
* * *
34959021 TCCGAACTCGTTGAGTTGAGTCTGAGTTTACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
34959067 TCCGAACTCGTTGACTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
34959114 TCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
34959160 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34959194 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 57 0.56
47 27 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:34959179 original size:93 final size:93
Alignment explanation
Indices: 34959018--34959188 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
34959008 GGATGGTTGA
* * * * *
34959018 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTTACTTATGGATGCAAATGTCCGAACTCGTTGACT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGACT
34959083 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
34959111 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGACT
34959176 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
34959189 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGACT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34977977 original size:49 final size:50
Alignment explanation
Indices: 34977919--34978114 Score: 216
Period size: 50 Copynumber: 3.9 Consensus size: 50
34977909 TAGCTGAAGC
* *
34977919 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
* * *
34977967 TAGTCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTCAC
1 TA-TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
* ** * * * *
34978018 CATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
* * * *
34978068 TTTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
34978115 TCACAATAGA
Statistics
Matches: 123, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
48 2 0.02
49 39 0.32
50 45 0.37
51 37 0.30
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
Found at i:34978005 original size:26 final size:26
Alignment explanation
Indices: 34977975--34978056 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
34977965 AATAGTCTGG
34977975 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* * * *
34978001 TACACA-CGT-GACCT-CAC-CATCTAA
1 TACACATAGTAG-CCTGCACTTA-GTAC
*
34978025 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
34978051 TACACA
1 TACACA
34978057 CGTGATCACA
Statistics
Matches: 40, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
23 1 0.03
24 11 0.28
25 10 0.25
26 17 0.43
27 1 0.03
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.24
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:34978105 original size:101 final size:99
Alignment explanation
Indices: 34977932--34978118 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 99
34977922 CTGGTACGCA
*
34977932 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAGTCTGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATAGTCTGGTACACATAGTAGCCTGCACTTA
*
34977997 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * * *
34978031 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT-TTTTGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATAGTCT-GGTACACATAGTAGCCTGCAC
*
34978095 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
34978119 AATAGATCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
99 29 0.38
100 3 0.04
101 45 0.58
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATAGTCTGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:34980031 original size:13 final size:13
Alignment explanation
Indices: 34980013--34980037 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34980003 CCGAGCACAC
34980013 GCCCGTGTCCCTA
1 GCCCGTGTCCCTA
34980026 GCCCGTGTCCCT
1 GCCCGTGTCCCT
34980038 TACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTA
Found at i:34982775 original size:43 final size:43
Alignment explanation
Indices: 34982703--34982784 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 43
34982693 TGTGATTACG
* * * *
34982703 TGTAAGACCATGTCTGGGACATTGACATCGTTATTTGATTTTA
1 TGTAAAACCATGTCTGGGACAGTGACATCGATATGTGATTTTA
* * *
34982746 TGTAAAACCCTGTCTGGGATAGTGGCATCGATATGTGAT
1 TGTAAAACCATGTCTGGGACAGTGACATCGATATGTGAT
34982785 AATATAAGAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 32 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (43 bp):
TGTAAAACCATGTCTGGGACAGTGACATCGATATGTGATTTTA
Found at i:34989893 original size:33 final size:33
Alignment explanation
Indices: 34989851--34989914 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
34989841 ATTCAATATT
*
34989851 AGTACAGTCTGGGCCTTAGCCCTATACAGTATC
1 AGTACAGTCTGGGCCATAGCCCTATACAGTATC
* *
34989884 AGTATAGTCTGGGCCATGGCCCTATACAGTA
1 AGTACAGTCTGGGCCATAGCCCTATACAGTA
34989915 ATAGTGTGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (33 bp):
AGTACAGTCTGGGCCATAGCCCTATACAGTATC
Found at i:34990328 original size:27 final size:27
Alignment explanation
Indices: 34990298--34990442 Score: 193
Period size: 27 Copynumber: 5.4 Consensus size: 27
34990288 GGGCATAATT
*
34990298 ATCATTTTACCCCATAGGGGCATTACG
1 ATCATTTTACCCTATAGGGGCATTACG
*
34990325 ATCATTTTACCCTATAGGGGTATTACG
1 ATCATTTTACCCTATAGGGGCATTACG
*
34990352 GTCATTTTACCCTATAGGGGCATTAC-
1 ATCATTTTACCCTATAGGGGCATTACG
* * *
34990378 AGTCATTTTACCCTACAAGGGTATTACG
1 A-TCATTTTACCCTATAGGGGCATTACG
* * *
34990406 GTCATTTTACCCTACAGAGGCATTACG
1 ATCATTTTACCCTATAGGGGCATTACG
34990433 ATCATTTTAC
1 ATCATTTTAC
34990443 TCTTCATGGG
Statistics
Matches: 103, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (27 bp):
ATCATTTTACCCTATAGGGGCATTACG
Found at i:34990384 original size:54 final size:54
Alignment explanation
Indices: 34990299--34990469 Score: 238
Period size: 54 Copynumber: 3.2 Consensus size: 54
34990289 GGCATAATTA
* *
34990299 TCATTTTACCCCATAGGGGCATTACGATCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTATAGGGGCATTACGATCATTTTACCCTATAAGGGTATTACGG
*
34990353 TCATTTTACCCTATAGGGGCATTAC-AGTCATTTTACCCTACAAGGGTATTACGG
1 TCATTTTACCCTATAGGGGCATTACGA-TCATTTTACCCTATAAGGGTATTACGG
* * * * *
34990407 TCATTTTACCCTACAGAGGCATTACGATCATTTTACTCT-TCATGGGTATTATGG
1 TCATTTTACCCTATAGGGGCATTACGATCATTTTACCCTAT-AAGGGTATTACGG
34990461 TCATTTTAC
1 TCATTTTAC
34990470 AAACCAGGGT
Statistics
Matches: 105, Mismatches: 9, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
53 1 0.01
54 103 0.98
55 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (54 bp):
TCATTTTACCCTATAGGGGCATTACGATCATTTTACCCTATAAGGGTATTACGG
Found at i:34990457 original size:27 final size:27
Alignment explanation
Indices: 34990298--34990469 Score: 154
Period size: 27 Copynumber: 6.4 Consensus size: 27
34990288 GGGCATAATT
* *
34990298 ATCATTTTACCCCAT-AGGGGCATTACG
1 ATCATTTTA-CCCTTCAGGGGTATTACG
34990325 ATCATTTTACCCTAT-AGGGGTATTACG
1 ATCATTTTACCCT-TCAGGGGTATTACG
* *
34990352 GTCATTTTACCCTAT-AGGGGCATTAC-
1 ATCATTTTACCCT-TCAGGGGTATTACG
* *
34990378 AGTCATTTTACCCTACAAGGGTATTACG
1 A-TCATTTTACCCTTCAGGGGTATTACG
* * * *
34990406 GTCATTTTACCCTACAGAGGCATTACG
1 ATCATTTTACCCTTCAGGGGTATTACG
* * *
34990433 ATCATTTTACTCTTCATGGGTATTATG
1 ATCATTTTACCCTTCAGGGGTATTACG
*
34990460 GTCATTTTAC
1 ATCATTTTAC
34990470 AAACCAGGGT
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
26 3 0.02
27 118 0.98
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (27 bp):
ATCATTTTACCCTTCAGGGGTATTACG
Found at i:34994994 original size:68 final size:68
Alignment explanation
Indices: 34994846--34995045 Score: 180
Period size: 68 Copynumber: 2.9 Consensus size: 68
34994836 CTAGCCAATT
* * *
34994846 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGTGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGTGACCTAGCTACA
*
34994911 CTTA
65 CATA
* *
34994915 TCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGTGACCTAGCTA
34994977 CTACATA
63 C-ACATA
* * * * *
34994984 GTATCTCGTAGCTTTCTTGTAC-ACATGATGT---GCACTCGGCATCATACATGTGACCTAGCTA
1 -TATCTCGTAGCTCTCTTGT-CTACATGGTGTACATCACTC-GAATCACACATGTGACCTAGCTA
34995045 C
63 C
34995046 GCTCCCTCTA
Statistics
Matches: 109, Mismatches: 12, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
65 1 0.01
66 1 0.01
67 1 0.01
68 64 0.59
69 10 0.09
70 6 0.06
71 26 0.24
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.33
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGTGACCTAGCTACAC
ATA
Found at i:35009800 original size:22 final size:22
Alignment explanation
Indices: 35009772--35009845 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
35009762 AAGTGTATAT
35009772 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * ***
35009794 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GCCG
35009817 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
35009839 ATGTGAT
1 ATGTGAT
35009846 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:35009802 original size:47 final size:47
Alignment explanation
Indices: 35009634--35010199 Score: 838
Period size: 47 Copynumber: 12.1 Consensus size: 47
35009624 GAAATGATAG
35009634 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
35009683 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
35009732 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
35009778 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
35009823 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
35009868 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
35009915 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
35009962 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
35010008 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
35010055 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
35010102 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
35010149 CAAGGCCGAGTGGCCAACGTAATGGATGTGGAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
35010196 TAAG
1 TAAG
35010200 TCCCGAAAGG
Statistics
Matches: 490, Mismatches: 23, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
45 88 0.18
46 57 0.12
47 263 0.54
48 33 0.07
49 49 0.10
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:35010052 original size:140 final size:141
Alignment explanation
Indices: 35009634--35010155 Score: 858
Period size: 140 Copynumber: 3.7 Consensus size: 141
35009624 GAAATGATAG
* *
35009634 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
35009699 ATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAA
64 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
*
35009763 AGTGTATATATGTGA
127 AGTGTATATGTGTGA
*
35009778 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
35009841 GTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
35009904 TATATGTGTGA
131 TATATGTGTGA
* * *
35009915 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGAT-AGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
35009979 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
*
35010044 TATGTGTGTGA
131 TATATGTGTGA
35010055 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
35010120 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
35010156 GAGTGGCCAA
Statistics
Matches: 357, Mismatches: 15, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
136 10 0.03
137 76 0.21
138 33 0.09
139 9 0.03
140 144 0.40
141 49 0.14
144 36 0.10
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (141 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
TATATGTGTGA
Found at i:35010374 original size:37 final size:37
Alignment explanation
Indices: 35010318--35010396 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35010308 CCGAGCTCTA
* * *
35010318 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
35010355 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
35010392 AAGAC
1 AAGAC
35010397 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:35012328 original size:42 final size:43
Alignment explanation
Indices: 35012238--35012382 Score: 265
Period size: 43 Copynumber: 3.4 Consensus size: 43
35012228 TTGGTTATCA
* *
35012238 GCACTAAGTGTGCGAGCAATAAGTGTTCACAGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
35012281 GCACTAAGTGTGCGGGCAATAAGTG-TCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
35012323 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
35012366 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
35012383 TTGAAATGCA
Statistics
Matches: 99, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
42 41 0.41
43 58 0.59
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:35012399 original size:29 final size:29
Alignment explanation
Indices: 35012364--35012437 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
35012354 GTTGTGAGAT
* *
35012364 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
35012393 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
35012422 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
35012438 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:35012796 original size:40 final size:40
Alignment explanation
Indices: 35012748--35012903 Score: 186
Period size: 40 Copynumber: 3.9 Consensus size: 40
35012738 TTGAATGATG
*
35012748 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
35012788 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
** ** * * * *
35012828 TCCATGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
35012868 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
35012904 CGTGTATTCG
Statistics
Matches: 97, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:35013094 original size:25 final size:25
Alignment explanation
Indices: 35013066--35013116 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
35013056 TGTTAATAAC
35013066 GAATGAATAAGA-GCACTATGTGTGT
1 GAATG-ATAAGAGGCACTATGTGTGT
* *
35013091 GAATGATTAGAGGCACTGTGTGTGT
1 GAATGATAAGAGGCACTATGTGTGT
35013116 G
1 G
35013117 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.29
Consensus pattern (25 bp):
GAATGATAAGAGGCACTATGTGTGT
Found at i:35016394 original size:42 final size:42
Alignment explanation
Indices: 35016333--35016461 Score: 128
Period size: 42 Copynumber: 3.1 Consensus size: 42
35016323 ATGCCGATGT
35016333 GATGAATGT-AAAGTGTATATATATGTGAAGGCCTAATGGCC
1 GATGAATGTGAAAGTGTATATATATGTGAAGGCCTAATGGCC
35016374 GATGAATGTGAAAGTG--TATATAT-TGATA-GCCTAAT-GCC
1 GATGAATGTGAAAGTGTATATATATGTGA-AGGCCTAATGGCC
* **
35016412 GATGTGATGAAGTGAAAGTGTATATACGTGAT-AAGGCCTAATGGCC
1 GA--TGA--ATGTGAAAGTGTATATATATG-TGAAGGCCTAATGGCC
35016458 GATG
1 GATG
35016462 TGATGAATGT
Statistics
Matches: 73, Mismatches: 3, Indels: 21
0.75 0.03 0.22
Matches are distributed among these distances:
38 5 0.07
39 10 0.14
40 11 0.15
41 9 0.12
42 16 0.22
44 8 0.11
45 8 0.11
46 6 0.08
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (42 bp):
GATGAATGTGAAAGTGTATATATATGTGAAGGCCTAATGGCC
Found at i:35016444 original size:43 final size:46
Alignment explanation
Indices: 35016314--35016752 Score: 552
Period size: 43 Copynumber: 10.0 Consensus size: 46
35016304 TGAATGATAG
*
35016314 TAAGGCCTAAT-GCCGATGTGATGAATGT-AAAGTGTATATATATG-
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
* *
35016358 TGAAGGCCTAATGGCC-----GATGAATGTGAAAGTGTATATATTGA
1 T-AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTGA
35016400 T-A-GCCTAAT-GCCGATGTGATGAA-GTGAAAGTGTATATACGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
*
35016443 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTATATACGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA-GTGA
*
35016489 TAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA-TGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTGA
*
35016531 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATAT-GTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTGA
35016576 T-AGGCCTAATAGCCGATGTGATGAATGT-AAAGTGTATAT-GTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTGA
* * *
35016619 TAAGGCCTAATAGCCGACGTGATGAATGTG-AAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT-AGTGA
35016665 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGT--
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTGA
* *
35016709 TAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTATATAT-GTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTGA
35016753 AAGCCGAGTG
Statistics
Matches: 357, Mismatches: 12, Indels: 52
0.85 0.03 0.12
Matches are distributed among these distances:
38 3 0.01
39 7 0.02
40 1 0.00
41 11 0.03
42 36 0.10
43 91 0.25
44 70 0.20
45 53 0.15
46 70 0.20
47 15 0.04
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (46 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTGA
Found at i:35016553 original size:134 final size:132
Alignment explanation
Indices: 35016314--35016757 Score: 541
Period size: 134 Copynumber: 3.4 Consensus size: 132
35016304 TGAATGATAG
*
35016314 TAAGGCCTAAT-GCCGATGTGATGAATGTAAAGTGTATATATATGTGAAGGCCTAATGGCC----
1 TAAGGCCTAATGGCCGATGTGATGAATGTAAAGTG--TATATATGTGAAAGCCTAATGGCCGAGT
35016374 GATGAATGTGAAAGTGTATAT-ATTGATA-GCCTAAT-GCCGATGTGATGAA-GTGAAAGTGTAT
64 GATGAATGTGAAAGTGTATATGA-T-A-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
35016435 ATACGTGA
126 ATA-GTGA
*
35016443 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTATATACGTGATAAGCCTAATGGCCGATG
1 TAAGGCCTAATGGCCGATGTGATGAATGT-AAAGTGTATATATGTGA-AAGCCTAATGGCCGA-G
*
35016507 TGATGAATGTGAAAGTGTATATGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATAT
63 TGATGAATGTGAAAGTGTATATGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
35016572 -GTGA
128 AGTGA
* *
35016576 T-AGGCCTAATAGCCGATGTGATGAATGTAAAGTG--TATATGTGATAAGGCCTAATAGCCGACG
1 TAAGGCCTAATGGCCGATGTGATGAATGTAAAGTGTATATATGTGA-AA-GCCTAATGGCCGA-G
*
35016638 TGATGAATGTG-AAGTGTATGTGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
63 TGATGAATGTGAAAGTGTA----TATGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
35016702 ATATAGT--
124 ATATAGTGA
35016709 TAA-GCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATGTGAAAGCC
1 TAAGGCCTAATGGCCGATGTGATGAATGT-AAAGTGTATATATGTGAAAGCC
35016758 GAGTGGCCAA
Statistics
Matches: 282, Mismatches: 10, Indels: 43
0.84 0.03 0.13
Matches are distributed among these distances:
128 10 0.04
129 23 0.08
130 37 0.13
131 30 0.11
132 33 0.12
133 40 0.14
134 92 0.33
135 17 0.06
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (132 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTAAAGTGTATATATGTGAAAGCCTAATGGCCGAGTGA
TGAATGTGAAAGTGTATATGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGT
GA
Found at i:35016689 original size:177 final size:175
Alignment explanation
Indices: 35016314--35016757 Score: 593
Period size: 177 Copynumber: 2.5 Consensus size: 175
35016304 TGAATGATAG
* *
35016314 TAAGGCCTAATGCCGATGTGATGAATGT-AAAGTGTATATATATGTGAAGGCCTAATG--G-C-C
1 TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATAGA--T-AAGGCCTAATGCCGACGT
*
35016374 GATGAATGTGAAAGTGTATATATTGATAGCCTAATGCCGATGTGATGAAGTGAAAGTGTATATAC
63 GATGAATGTGAAAGTGTATAT-GTGATAGCCTAATGCCGATGTGATGAAGTGAAAGTGTATATA-
* *
35016439 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATATACGTGA
126 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAATGTATATACGTGA
35016489 TAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-GATAAGGCCTAATAGCCGACGTG
1 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATAGATAAGGCCTAAT-GCCGACGTG
35016552 ATGAATGTGAAAGTGTATATGTGATAGGCCTAATAGCCGATGTGATGAA-TGTAAAGTGTATAT-
64 ATGAATGTGAAAGTGTATATGTGATA-GCCTAAT-GCCGATGTGATGAAGTG-AAAGTGTATATA
* * **
35016615 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAGTGTATGTGTGTGA
126 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAATGTATATACGTGA
* *
35016665 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGTTAA-GCCTAATGGCCGATGTG
1 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATAGATAAGGCCTAAT-GCCGACGTG
* *
35016729 ATGAATGTGAAAGTATATATGTGAAAGCC
64 ATGAATGTGAAAGTGTATATGTGATAGCC
35016758 GAGTGGCCAA
Statistics
Matches: 242, Mismatches: 15, Indels: 23
0.86 0.05 0.08
Matches are distributed among these distances:
172 10 0.04
173 2 0.01
174 7 0.03
175 22 0.09
176 67 0.28
177 105 0.43
178 29 0.12
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (175 bp):
TAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATAGATAAGGCCTAATGCCGACGTGAT
GAATGTGAAAGTGTATATGTGATAGCCTAATGCCGATGTGATGAAGTGAAAGTGTATATAGTGAT
AAGGCCTAATAGCCGACGTGATGAATGTGAAATGTATATACGTGA
Found at i:35016971 original size:35 final size:35
Alignment explanation
Indices: 35016917--35016985 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
35016907 CCGAGCTCTA
* * *
35016917 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGT
*
35016952 AAGACCCGATAACTTCGTGTGGAGATTATGTCCG
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCG
35016986 GGTAAGACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (35 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGT
Found at i:35018969 original size:20 final size:21
Alignment explanation
Indices: 35018939--35018977 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
35018929 GTACGCAATA
35018939 CCATAACCATTCATACCAAAT
1 CCATAACCATTCATACCAAAT
*
35018960 CCAT-ACCATTCGTACCAA
1 CCATAACCATTCATACCAA
35018978 TCCCAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.36, G:0.03, T:0.23
Consensus pattern (21 bp):
CCATAACCATTCATACCAAAT
Found at i:35034907 original size:36 final size:37
Alignment explanation
Indices: 35034802--35034907 Score: 171
Period size: 36 Copynumber: 2.9 Consensus size: 37
35034792 GCTCAGACGA
* * *
35034802 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
35034839 AATCTCCACACGTAGTCATCGGGTCTTA-CCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
35034875 AATCTCCACACGTAGTCATCGGGT-TTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
35034908 ATATATTTCC
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
35 3 0.05
36 37 0.57
37 25 0.38
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:35035433 original size:98 final size:98
Alignment explanation
Indices: 35035117--35035637 Score: 854
Period size: 96 Copynumber: 5.5 Consensus size: 98
35035107 GTTTCGCATA
* * *
35035117 GCCATTCGGCCTTACCACATATA-TCATGTTCACATTCATCACA-T-GCCATTCGGCCTTAT--C
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* * *
35035177 TC--ATATATGCATGTTCACATTCATCACATTG
66 ACATATATATACAGGTTCACATTCATCACATTG
35035208 GCCA-TCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGG-CTTATCAC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
*
35035271 GCATATATATACA-GTTCACATTCATCACATTG
66 ACATATATATACAGGTTCACATTCATCACATTG
35035303 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
*
35035368 ATATATATATACAGGTTCACATTCATCACATTG
66 ACATATATATACAGGTTCACATTCATCACATTG
35035401 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
35035466 ACATATATATAC-GGTTCACATTCATCACATT-
66 ACATATATATACAGGTTCACATTCATCACATTG
35035497 GCCATTCGGCCTTATCACACATACGCATGTTCACA-TCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
*
35035561 ACATATATATACGGGTTCACATTCATCACATTG
66 ACATATATATACAGGTTCACATTCATCACATTG
*
35035594 GCCATTC-GCCTTATCACACATACGCATGTTCACATCCATCACAT
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
35035638 AAAATCCTAA
Statistics
Matches: 408, Mismatches: 9, Indels: 20
0.93 0.02 0.05
Matches are distributed among these distances:
90 16 0.04
91 23 0.06
92 6 0.01
93 9 0.02
94 2 0.00
95 64 0.16
96 140 0.34
97 53 0.13
98 95 0.23
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (98 bp):
GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ACATATATATACAGGTTCACATTCATCACATTG
Found at i:35035509 original size:290 final size:284
Alignment explanation
Indices: 35035117--35035637 Score: 850
Period size: 290 Copynumber: 1.8 Consensus size: 284
35035107 GTTTCGCATA
* * *
35035117 GCCATTCGGCCTTACCACATATATCATGTTCACATTCATCACATGCCATTCGGCCTTATCTCATA
1 GCCATTCGGCCTTACCACACATAGCATGTTCACATTCATCACATGCCATTCGGCCTTATCACATA
* *
35035182 TATGCATGTTCACATTCATCACATTGGCCATCGGCCTTATCACACATACGCATGTTCACATTCAT
66 TATACAGGTTCACATTCATCACATTGGCCATCGGCCTTATCACACATACGCATGTTCACA-TCAT
*
35035247 CACATTGGCCATTCGG-CTTATCACGCATATATATAC-AGTTCACATTCATCACATTGGCCATTC
130 CACATTGGCCATTCGGCCTTATCACACATATATATACGAGTTCACATTCATCACATTGGCCATTC
*
35035310 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
195 -GCCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATA
35035375 TATACAGGTTCACATTCATCACATTG
259 TATACAGGTTCACATTCATCACATTG
*
35035401 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTACCACACATA-GCATGTTCACATTCATCACA-T-GCCATTCGGCCTTAT--C
*
35035466 ACATATATATACGGTTCACATTCATCACATT-GCCATTCGGCCTTATCACACATACGCATGTTCA
61 ACATATATACA-GGTTCACATTCATCACATTGGCCA-TCGGCCTTATCACACATACGCATGTTCA
*
35035530 CATCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGG
124 CATCATCACATTGGCCATTCGGCCTTATCACACATATATATACGAGTTCACATTCATCACATTGG
35035595 CCATTCGCCTTATCACACATACGCATGTTCACATCCATCACAT
189 CCATTCGCCTTATCACACATACGCATGTTCACATCCATCACAT
35035638 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 10, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
284 21 0.10
285 19 0.09
286 1 0.00
287 15 0.07
289 33 0.15
290 103 0.47
291 26 0.12
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (284 bp):
GCCATTCGGCCTTACCACACATAGCATGTTCACATTCATCACATGCCATTCGGCCTTATCACATA
TATACAGGTTCACATTCATCACATTGGCCATCGGCCTTATCACACATACGCATGTTCACATCATC
ACATTGGCCATTCGGCCTTATCACACATATATATACGAGTTCACATTCATCACATTGGCCATTCG
CCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATATA
TACAGGTTCACATTCATCACATTG
Found at i:35037939 original size:84 final size:84
Alignment explanation
Indices: 35037813--35037989 Score: 329
Period size: 84 Copynumber: 2.1 Consensus size: 84
35037803 TATTTTATTG
*
35037813 CCCATGCCCTTTATTTTATTAACCTTACATAATGCACTACCCCAACATGTTTATGACATG-TTTT
1 CCCATGCTCTTTATTTTATTAACCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
35037877 AGCCATAACATCTTGTCCA
66 AGCCATAACATCTTGTCCA
35037896 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAA-CCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
35037961 TAGCCATAACATCTTGTCCA
65 TAGCCATAACATCTTGTCCA
35037981 CCCATGCTC
1 CCCATGCTC
35037990 ATGGCCGGCC
Statistics
Matches: 91, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
83 21 0.23
84 38 0.42
85 32 0.35
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.37
Consensus pattern (84 bp):
CCCATGCTCTTTATTTTATTAACCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
AGCCATAACATCTTGTCCA
Found at i:35039786 original size:40 final size:40
Alignment explanation
Indices: 35039754--35040101 Score: 542
Period size: 40 Copynumber: 8.8 Consensus size: 40
35039744 CCAGCATGAT
* * * *
35039754 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
35039794 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
35039834 TGCTCTTC-GAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
35039873 TGCTCCTC-GGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
35039912 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
35039952 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
35039992 TGCTCCTC-GGACTTAGCCCGGATATA-CACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
35040030 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
35040070 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
35040102 CTCAATTCTC
Statistics
Matches: 286, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
38 20 0.07
39 104 0.36
40 162 0.57
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:35039978 original size:158 final size:158
Alignment explanation
Indices: 35039754--35040101 Score: 563
Period size: 158 Copynumber: 2.2 Consensus size: 158
35039744 CCAGCATGAT
* * * * **
35039754 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCACGGATA
*
35039819 TATCACTAGCACGAATGCTCTTCGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTC-GG
66 TATCACTAGCACGAATGCTCCTCGAACTTAGCCCGGATACA-CACTAGCACGAATGCTCCTCGGG
*
35039883 ACTTAGCCCAGATATATCACTAGCACGAA
130 ACTTAGCCCAGATACATCACTAGCACGAA
* *
35039912 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCACGGATA
* *
35039977 TATCACTAGCACGAATGCTCCTCGGACTTAGCCCGGATATACACTAGCACGAATGCTCCTCGGGA
66 TATCACTAGCACGAATGCTCCTCGAACTTAGCCCGGATACACACTAGCACGAATGCTCCTCGGGA
*
35040042 CTTAGCCCGGATACATCACTAGCACGAA
131 CTTAGCCCAGATACATCACTAGCACGAA
35040070 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
35040102 CTCAATTCTC
Statistics
Matches: 175, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
157 20 0.11
158 155 0.89
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (158 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCACGGATA
TATCACTAGCACGAATGCTCCTCGAACTTAGCCCGGATACACACTAGCACGAATGCTCCTCGGGA
CTTAGCCCAGATACATCACTAGCACGAA
Found at i:35040022 original size:118 final size:118
Alignment explanation
Indices: 35039754--35040101 Score: 554
Period size: 118 Copynumber: 2.9 Consensus size: 118
35039744 CCAGCATGAT
* * * * ** *
35039754 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCCTC-GGACTTAGCCCGGATAT-ACACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATA
* *
35039819 TATCACTAGCACGAATGCTCTTC-GAACTTAGCCCGGATACATCACTAGCACGAA
64 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
35039873 TGCTCCTCGGACTTAGCCCAGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
1 TGCTCCTCGGACTTAGCCCGGATATA-CACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATAT
*
35039938 ATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
65 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
35039992 TGCTCCTCGGACTTAGCCCGGATATACACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACA
1 TGCTCCTCGGACTTAGCCCGGATATACACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
35040057 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
66 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
35040102 CTCAATTCTC
Statistics
Matches: 213, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
117 1 0.00
118 151 0.71
119 61 0.29
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (118 bp):
TGCTCCTCGGACTTAGCCCGGATATACACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:35041412 original size:37 final size:37
Alignment explanation
Indices: 35041353--35041498 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
35041343 AGCTCAGACG
* * *
35041353 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
35041390 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
35041427 TAATCTCCACACGTAGTCGTCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
35041464 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
35041499 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:35041769 original size:47 final size:47
Alignment explanation
Indices: 35041707--35042188 Score: 694
Period size: 47 Copynumber: 10.1 Consensus size: 47
35041697 ACACGTTTCG
* * * **
35041707 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
35041754 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
35041801 CATCGGCCATCCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
35041848 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
35041895 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
*
35041948 CATTAGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
35041995 CATTGGCCATTCGGCCTTATCACACATATATATACGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCA
*
35042045 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
35042092 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
35042139 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
35042186 CAT
1 CAT
35042189 AAAATCCTAA
Statistics
Matches: 394, Mismatches: 32, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
47 307 0.78
49 1 0.00
50 44 0.11
51 1 0.00
53 41 0.10
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:35042133 original size:244 final size:241
Alignment explanation
Indices: 35041707--35042166 Score: 776
Period size: 244 Copynumber: 1.9 Consensus size: 241
35041697 ACACGTTTCG
* **
35041707 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
35041772 ATCTCATATATGCATGTTCACATTCATCACATCGGCCATCCGGCCTTATCACACATACGCATGTT
66 ATCACATATATACAGGTTCACATTCATCACATCGGCCATCCGGCCTTATCACACATACGCATGTT
* *
35041837 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGC
131 CACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGC
*
35041902 CATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
196 CATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCA
*
35041948 CATTAGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
35042013 ATCACACATATATATACGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
66 AT--CACATATATACA-GGTTCACATTCATCACATCGGCCATCCGGCCTTATCACACATACGCAT
35042078 GTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
128 GTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
35042143 GGCCATTCGGCCTTATCACACATA
193 GGCCATTCGGCCTTATCACACATA
35042167 CGCATGTTCA
Statistics
Matches: 203, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
241 63 0.31
243 9 0.04
244 131 0.65
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (241 bp):
CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATATACAGGTTCACATTCATCACATCGGCCATCCGGCCTTATCACACATACGCATGTT
CACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGC
CATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCA
Found at i:35044506 original size:85 final size:85
Alignment explanation
Indices: 35044377--35044555 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
35044367 TATTTTATTG
*
35044377 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
35044442 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
35044462 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
35044527 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
35044547 CCCATGCTC
1 CCCATGCTC
35044556 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:35045426 original size:31 final size:31
Alignment explanation
Indices: 35045385--35045448 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
35045375 CCTTTTCATA
* *
35045385 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGACGAAGCCT
** *
35045416 TTTCAAATTTCATATTATTGGGACGAAGCCT
1 TTTCAAATTTCATAACACTGGGACGAAGCCT
35045447 TT
1 TT
35045449 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGACGAAGCCT
Found at i:35045694 original size:24 final size:24
Alignment explanation
Indices: 35045661--35045831 Score: 256
Period size: 24 Copynumber: 7.2 Consensus size: 24
35045651 GGCCTTACCT
*
35045661 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
35045685 CTTTTTATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
35045709 C-TTTAATAACTGAGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
35045732 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
35045756 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
35045780 CTTTTGATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
35045804 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
35045827 CTTTT
1 CTTTT
35045832 TCACTTCCTC
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
23 41 0.31
24 93 0.69
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:35045718 original size:47 final size:47
Alignment explanation
Indices: 35045663--35045831 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
35045653 CCTTACCTCT
* *
35045663 TTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
* *
35045710 TTTAATAACTGAGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
* *
35045757 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
35045805 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
35045832 TCACTTCCTC
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 69 0.62
48 43 0.38
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:35045742 original size:71 final size:72
Alignment explanation
Indices: 35045661--35045832 Score: 269
Period size: 71 Copynumber: 2.4 Consensus size: 72
35045651 GGCCTTACCT
*
35045661 CTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCC-TTTAATAACT-GAGG
1 CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTTAATAACTAG-GG
*
35045724 CGTAAGCC
65 CATAAGCC
* * *
35045732 CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTTAATAACTAGGGC
35045797 ATAAGCC
66 ATAAGCC
35045804 C-TTTAATAACTGGGGCATAAGCCCTTTTT
1 CTTTTAATAACTGGGGCATAAGCCCTTTTT
35045833 CACTTCCTCC
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 72 0.78
72 19 0.21
73 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (72 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTTAATAACTAGGGC
ATAAGCC
Found at i:35045906 original size:20 final size:20
Alignment explanation
Indices: 35045881--35045947 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
35045871 TTATGAATAC
35045881 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
35045901 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
35045921 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
35045941 ACCATGT
1 ATCATGT
35045948 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:35045912 original size:11 final size:11
Alignment explanation
Indices: 35045881--35045936 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
35045871 TTATGAATAC
35045881 ATCATGTGCAT
1 ATCATGTGCAT
*
35045892 ATCA--TACAT
1 ATCATGTGCAT
35045901 ATCATGTGCAT
1 ATCATGTGCAT
*
35045912 ATCA--TACAT
1 ATCATGTGCAT
*
35045921 GTCATGTGCAT
1 ATCATGTGCAT
35045932 ATCAT
1 ATCAT
35045937 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:35046030 original size:25 final size:25
Alignment explanation
Indices: 35045984--35046031 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
35045974 ATACATAAAC
* * * *
35045984 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGAAAAACGGTCATTTTTA
35046009 CCTAGGGGAAAAACGGTCATTTT
1 CCTAGGGGAAAAACGGTCATTTT
35046032 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGAAAAACGGTCATTTTTA
Found at i:35054639 original size:36 final size:36
Alignment explanation
Indices: 35054592--35054663 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
35054582 GAGCAAACGT
*
35054592 ATGTGACGAGATGACTTGCTAACCCCGTACAAAAGG
1 ATGTGACGAGATGACTTGCTAACCCCATACAAAAGG
*
35054628 ATGTGACGAGATGATTTGCTAACCCCATACAAAAGG
1 ATGTGACGAGATGACTTGCTAACCCCATACAAAAGG
35054664 TTTTACTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (36 bp):
ATGTGACGAGATGACTTGCTAACCCCATACAAAAGG
Found at i:35061313 original size:93 final size:93
Alignment explanation
Indices: 35061200--35061371 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
35061190 ACCCATAAGT
* * *
35061200 GAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
35061265 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
35061293 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
35061358 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
35061372 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:35061367 original size:46 final size:46
Alignment explanation
Indices: 35061192--35061367 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
35061182 TGTAACCGAC
* * *
35061192 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
35061238 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
35061284 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
35061331 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
35061368 TGCCCAAACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:35061386 original size:46 final size:46
Alignment explanation
Indices: 35061243--35061386 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
35061233 CGCATCCATA
* * *
35061243 AGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
35061292 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
35061336 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
35061382 AGTGA
1 AGTGA
35061387 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
44 8 0.11
46 33 0.44
47 30 0.40
49 4 0.05
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:35062998 original size:13 final size:13
Alignment explanation
Indices: 35062980--35063012 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
35062970 ATTCATTCAA
35062980 TATAGATATGATT
1 TATAGATATGATT
35062993 TATAGATATGATT
1 TATAGATATGATT
35063006 TATAGAT
1 TATAGAT
35063013 CTCACCAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.45
Consensus pattern (13 bp):
TATAGATATGATT
Found at i:35063817 original size:15 final size:15
Alignment explanation
Indices: 35063769--35063848 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
35063759 CAAAGATAAT
*
35063769 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
35063783 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
35063798 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
*
35063813 AAGAAATCTAGAATA
1 AAGAAATCCAGAATA
* * *
35063828 AAGAGATACAGGATA
1 AAGAAATCCAGAATA
35063843 AAGAAA
1 AAGAAA
35063849 CCCAAGATAC
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.60, C:0.11, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:35063857 original size:15 final size:15
Alignment explanation
Indices: 35063780--35063857 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
35063770 AGAAAACCGA
*
35063780 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
35063795 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* *
35063809 AATAAAGAAA-TCTAG
1 -ATAAAGAAACCCAAG
* ** *
35063824 AATAAAGAGATACAGG
1 -ATAAAGAAACCCAAG
35063840 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
35063855 ATA
1 ATA
35063858 CGATATTATG
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
14 3 0.06
15 43 0.90
16 2 0.04
ACGTcount: A:0.58, C:0.13, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:35066663 original size:46 final size:45
Alignment explanation
Indices: 35066596--35066770 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
35066586 TGTAACCCGC
*
35066596 CCATAAGTGAACTTGGACTCAACTCAACGAGCTT-GAGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCG-GCATTCGCAT
* * *
35066642 CCATAAGTGAACTTGGACTCAACTCAATGAGTTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--T
* ***
35066688 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCAT
35066735 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
35066771 ATGCCCAAAC
Statistics
Matches: 108, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 3 0.03
46 64 0.59
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:35066717 original size:93 final size:93
Alignment explanation
Indices: 35066604--35066775 Score: 285
Period size: 93 Copynumber: 1.8 Consensus size: 93
35066594 GCCCATAAGT
* *
35066604 GAACTTGGACTCAACTCAACGAGCTT--GAGCATTCGCATCCATAAGTGAACTTGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAG-TTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
35066667 AATGAGTTCGGATGCCTAGTTACATCTCTC
64 AACGAGTTCGGATGCCTAGTTACATCTCTC
35066697 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
35066762 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
35066776 CAAACATCCT
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
92 2 0.03
93 70 0.95
94 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:35066790 original size:46 final size:46
Alignment explanation
Indices: 35066647--35066790 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
35066637 CGCATCCATA
* * *
35066647 AGTGAACTTGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
35066696 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
35066740 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
35066786 AGTGA
1 AGTGA
35066791 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
44 8 0.11
46 33 0.44
47 30 0.40
49 4 0.05
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:35068358 original size:27 final size:27
Alignment explanation
Indices: 35068109--35068345 Score: 361
Period size: 27 Copynumber: 8.8 Consensus size: 27
35068099 TGGTAAGCAC
* * **
35068109 AATACCCCCATAAGATAAAATGACCGG
1 AATACCCCCATAGGGTAAAATGACCAA
* *
35068136 AATACCCCTATAAGGG-AAAATGACCGA
1 AATACCCCCAT-AGGGTAAAATGACCAA
*
35068163 AATACCCCCATAGGGTAAAATGACCGA
1 AATACCCCCATAGGGTAAAATGACCAA
*
35068190 AATACCCCCATAGGGTACAATGATCC-A
1 AATACCCCCATAGGGTAAAATGA-CCAA
*
35068217 AATACCCCTATAGGGTAAAATGACCAA
1 AATACCCCCATAGGGTAAAATGACCAA
35068244 AATACCCCCATAGGGTAAAATGACCAA
1 AATACCCCCATAGGGTAAAATGACCAA
35068271 AATACCCCCATAGGGTAAAATGACCAA
1 AATACCCCCATAGGGTAAAATGACCAA
35068298 AATACCCCCATAGGGTAAAATGACCAA
1 AATACCCCCATAGGGTAAAATGACCAA
35068325 AATACCCCCATAGGGTAAAAT
1 AATACCCCCATAGGGTAAAAT
35068346 AACTGTATTA
Statistics
Matches: 197, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.03
27 187 0.95
28 4 0.02
ACGTcount: A:0.43, C:0.25, G:0.16, T:0.16
Consensus pattern (27 bp):
AATACCCCCATAGGGTAAAATGACCAA
Found at i:35074943 original size:40 final size:39
Alignment explanation
Indices: 35074894--35074971 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 39
35074884 AAATCCAATC
35074894 ACCACCACAAAGCATGCGAGG-CTTTAAGCCCGGATATAAT
1 ACCACCACAAAGCATGCG-GGACTTT-AGCCCGGATATAAT
* *
35074934 ACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
1 ACCACCACAAAGCATGCGGGACTTTAGCCCGGATATAA
35074972 CACTAGAATG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
39 15 0.43
40 20 0.57
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.17
Consensus pattern (39 bp):
ACCACCACAAAGCATGCGGGACTTTAGCCCGGATATAAT
Found at i:35074971 original size:39 final size:39
Alignment explanation
Indices: 35074920--35075126 Score: 274
Period size: 39 Copynumber: 5.3 Consensus size: 39
35074910 CGAGGCTTTA
* * *
35074920 AGCCCGGATATAATACCAGCAC-AAAGCCTGCGGGACTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TT
* * * * *
35074959 AGCCCGGATATAACACTAGAATGATTGCC-TCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
35074997 AACCCGGATATAACACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
35075036 AGCCCGGATATAACACCAGCACGAATGCCTTTGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
35075075 AGCCCGGATATAACACCAGGACGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
35075114 AGCCCGGATATAA
1 AGCCCGGATATAA
35075127 TTCACCATTA
Statistics
Matches: 145, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
38 26 0.18
39 115 0.79
40 4 0.03
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:35077961 original size:40 final size:39
Alignment explanation
Indices: 35077877--35078061 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
35077867 TTGAATGATG
* * * *
35077877 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
35077917 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
35077957 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
35077996 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
35078037 -CCGGGATATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
35078062 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35078017 original size:79 final size:81
Alignment explanation
Indices: 35077877--35078061 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
35077867 TTGAATGATG
*
35077877 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
35077941 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
35077956 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
35078018 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
35078036 ACCGGGATATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35078062 AACGAGGAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:35078083 original size:79 final size:79
Alignment explanation
Indices: 35077930--35078094 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
35077920 GGACTAAGAT
* * ** *
35077930 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGATAAGCCCGAAGGCATTTGAACGAGTGACTAA
* *
35077995 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
35078009 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGATATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGATAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
35078072 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
35078088 CCGAAGG
1 CCGAAGG
35078095 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGATAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCTCGGTTAAATC
Found at i:35082269 original size:13 final size:13
Alignment explanation
Indices: 35082253--35082278 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35082243 CTGCCAAATC
35082253 CTTTATTCAAACA
1 CTTTATTCAAACA
35082266 CTTTATTCAAACA
1 CTTTATTCAAACA
35082279 TTTCAACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (13 bp):
CTTTATTCAAACA
Found at i:35086233 original size:93 final size:93
Alignment explanation
Indices: 35086121--35086292 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
35086111 CGCCCATAAG
* *
35086121 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
35086186 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
35086214 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
35086279 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
35086293 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:35086289 original size:46 final size:46
Alignment explanation
Indices: 35086114--35086289 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
35086104 TGTAACCCGC
* * *
35086114 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
35086160 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
35086210 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
35086253 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
35086290 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:35096625 original size:39 final size:39
Alignment explanation
Indices: 35096423--35096639 Score: 285
Period size: 39 Copynumber: 5.5 Consensus size: 39
35096413 ACAAAGCTGG
* * *
35096423 GGGACCTTAACCCTGGATAT-ACTACCAGCAC-AAAGCCTGC
1 GGGA-CTTAGCCC-GGATATAAC-ACCAGCACGAATGCCTTC
35096463 GGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTC
1 GGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTTC
* *
35096503 GGGGCTTAACCCGGATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
* * *
35096542 GGGACTTAGCCCAGATATAACACCAGCATGAATGTCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
* *
35096581 GGGACTTAGCCTGGATATAACACCAGCACGATTGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
*
35096620 AGGACTTAGCCCGGATATAA
1 GGGACTTAGCCCGGATATAA
35096640 TTCTCCATTA
Statistics
Matches: 157, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 134 0.85
40 23 0.15
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
Found at i:35101064 original size:11 final size:11
Alignment explanation
Indices: 35101048--35101073 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
35101038 TTGTTTGCTC
35101048 ATTTTGAATTT
1 ATTTTGAATTT
35101059 ATTTTGAATTT
1 ATTTTGAATTT
35101070 ATTT
1 ATTT
35101074 CGTTTTAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (11 bp):
ATTTTGAATTT
Found at i:35101656 original size:50 final size:50
Alignment explanation
Indices: 35101580--35101823 Score: 260
Period size: 50 Copynumber: 4.9 Consensus size: 50
35101570 TGATGCTAAG
35101580 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
** *
35101630 GAGATATGAGAGCTAGTGTACTACCATGTCTGGGACATGGCATCAGGACT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA-GCCTC
* * * * * * *
35101680 GATAGATGAGAACCAGTGTAAGATCATGTTTGAGACATGGCATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* * * * *
35101730 GATATACGAAAGTTAGTGTAAGACCATGTCTGGGACATGGCATC-GACT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
** * ** * *
35101778 TTGATTTTTGAGCTAGTGTAAGACCATGTCTGGGACTTGGCGTCAG
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG
35101824 AACCTTACCC
Statistics
Matches: 157, Mismatches: 34, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
48 33 0.21
49 7 0.04
50 114 0.73
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
Found at i:35105263 original size:24 final size:24
Alignment explanation
Indices: 35105231--35105282 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
35105221 TCCTAAGAGT
*
35105231 ATGTATGACTTAAATTTCATGTGA
1 ATGTATGACTTAAATTTCATCTGA
35105255 ATGTATGACTTAAATTTCATCTGA
1 ATGTATGACTTAAATTTCATCTGA
35105279 ATGT
1 ATGT
35105283 TATTATATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (24 bp):
ATGTATGACTTAAATTTCATCTGA
Found at i:35107530 original size:16 final size:15
Alignment explanation
Indices: 35107509--35107538 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
35107499 CAAACATGCT
35107509 TTAACACATGATCAAA
1 TTAACACAT-ATCAAA
35107525 TTAACACATATCAA
1 TTAACACATATCAA
35107539 CAAGGCACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.20, G:0.03, T:0.27
Consensus pattern (15 bp):
TTAACACATATCAAA
Found at i:35120298 original size:33 final size:32
Alignment explanation
Indices: 35120204--35120299 Score: 95
Period size: 34 Copynumber: 2.9 Consensus size: 32
35120194 TCAAGCCCAT
* **
35120204 TGGGCCTAAGCCCTATTCAGATAACAGTGGGTAC
1 TGGGCCTAAGCCCTTTTCAGATAACAGT--AAAC
* *
35120238 TGGGCCGAAGCCCTTTTCA-AAATACAGTAAAC
1 TGGGCCTAAGCCCTTTTCAGATA-ACAGTAAAC
*
35120270 TGGGCCTTAGCCCCTTTTCAGATAACAGTA
1 TGGGCCTAAG-CCCTTTTCAGATAACAGTA
35120300 TGGCCCATAG
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
32 10 0.20
33 17 0.33
34 24 0.47
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (32 bp):
TGGGCCTAAGCCCTTTTCAGATAACAGTAAAC
Found at i:35120654 original size:65 final size:65
Alignment explanation
Indices: 35120547--35120677 Score: 226
Period size: 65 Copynumber: 2.0 Consensus size: 65
35120537 AATCCCATGC
*
35120547 ATCAGATATTAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCACTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCACTCAGGTCAACCTT
* * *
35120612 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAATAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCACTCAGGTCAACCTT
35120677 A
1 A
35120678 ACCCTAGGGA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCACTCAGGTCAACCTT
Found at i:35121757 original size:21 final size:21
Alignment explanation
Indices: 35121733--35121772 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
35121723 TATATTTTAT
35121733 AGCATA-AGTAATAAAATAAAG
1 AGCATAGA-TAATAAAATAAAG
*
35121754 AGCATGGATAATAAAATAA
1 AGCATAGATAATAAAATAA
35121773 TATTGGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.60, C:0.05, G:0.15, T:0.20
Consensus pattern (21 bp):
AGCATAGATAATAAAATAAAG
Found at i:35122335 original size:40 final size:40
Alignment explanation
Indices: 35122280--35122461 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
35122270 TATTCGAATG
* *
35122280 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
35122320 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
35122360 ATATCTGGGCTATGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
35122400 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
35122440 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
35122462 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 14 0.11
40 110 0.87
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:35127152 original size:40 final size:40
Alignment explanation
Indices: 35127083--35127224 Score: 162
Period size: 40 Copynumber: 3.6 Consensus size: 40
35127073 TATTCGAATG
* * * *
35127083 ATATTCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
* *
35127123 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
* * *
35127163 ATATCCGGGCTAAGACCCAAAGGAATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAG-TGACT
* *
35127203 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCAAAGG
35127225 TACTTGGGTT
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 13 0.15
40 72 0.83
41 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
Found at i:35132350 original size:37 final size:37
Alignment explanation
Indices: 35132297--35132436 Score: 253
Period size: 37 Copynumber: 3.8 Consensus size: 37
35132287 TCGAATAGTC
*
35132297 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
35132334 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
35132371 CCACACGTAGTCATCGGGTCTTACCCGGACACAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
35132408 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
35132437 ATATATTTCC
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:35133070 original size:48 final size:48
Alignment explanation
Indices: 35132606--35133060 Score: 829
Period size: 48 Copynumber: 9.5 Consensus size: 48
35132596 CTAGCCGAAT
* * *
35132606 CACTAGCCATTCGGCTTTACCACATATACATATCCCATACATATTTCG
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
*
35132654 CATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
35132702 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
35132750 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
35132798 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
35132846 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
35132894 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
* *
35132942 CACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATATTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
* *
35132990 CACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATATTTCA
1 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
*
35133038 CATTAGCCATTCGGCTTTACCAC
1 CACTAGCCATTCGGCTTTACCAC
35133061 ACACACATAT
Statistics
Matches: 399, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 399 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
Found at i:35139872 original size:27 final size:27
Alignment explanation
Indices: 35139842--35140088 Score: 318
Period size: 27 Copynumber: 9.1 Consensus size: 27
35139832 AAGTACTCCT
35139842 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
35139869 GATTTACAGAATTAGCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
35139896 GATTTTTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
35139923 GATTTACAGAATTACTATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
* *
35139950 GATTTATAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
35139977 GATTTACAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
35140004 AATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
35140031 GATTTACAGAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
35140058 GACTTGTA-A-AATTACTGTTTTACCCTT
1 GA-TT-TACAGAATTACCGTTTTACCCTC
35140085 GATT
1 GATT
35140089 GTGAAATTAT
Statistics
Matches: 190, Mismatches: 28, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 183 0.96
28 3 0.02
29 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:35139932 original size:81 final size:80
Alignment explanation
Indices: 35139842--35140088 Score: 359
Period size: 81 Copynumber: 3.0 Consensus size: 80
35139832 AAGTACTCCT
* * *
35139842 GATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTAGCATTTTACCCTCGATTTTTAAAA
1 GATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTA-CGTTTTACCCTCGATTTATAAAA
35139907 TTACCGTTTTACCCTC
65 TTACCGTTTTACCCTC
* * * *
35139923 GATTTACAGAATTACTATTTTACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAA
1 GATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTAC-GTTTTACCCTCGATTTATAAAA
35139988 TTACCGTTTTACCCTC
65 TTACCGTTTTACCCTC
* * *
35140004 AATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGACTTGTAAAA
1 GATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTA-CGTTTTACCCTCGATTTATAAAA
* *
35140069 TTACTGTTTTACCCTT
65 TTACCGTTTTACCCTC
35140085 GATT
1 GATT
35140089 GTGAAATTAT
Statistics
Matches: 147, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 145 0.99
82 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (80 bp):
GATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACGTTTTACCCTCGATTTATAAAAT
TACCGTTTTACCCTC
Found at i:35140130 original size:27 final size:28
Alignment explanation
Indices: 35140091--35140286 Score: 208
Period size: 27 Copynumber: 7.2 Consensus size: 28
35140081 CCTTGATTGT
*
35140091 GAAATTATTGAAATACCCCTGTAGGGTA
1 GAAATTATCGAAATACCCCTGTAGGGTA
*
35140119 GAAATT-TCGAAATACCCCTATAGGGTA
1 GAAATTATCGAAATACCCCTGTAGGGTA
* * * *
35140146 G-AATTATTGAAATACCCTTATAGGATA
1 GAAATTATCGAAATACCCCTGTAGGGTA
* * *
35140173 G-AATTACCAAAATACCCCTGTAGGTTA
1 GAAATTATCGAAATACCCCTGTAGGGTA
*
35140200 G-AATTATCGAAATACCCTTGTAGGGTA
1 GAAATTATCGAAATACCCCTGTAGGGTA
35140227 GAAA-TATCGAAATACCCCTGTAGGGTA
1 GAAATTATCGAAATACCCCTGTAGGGTA
* * ** *
35140254 G-AATTACCGAGATACCTTTGTGGGGTA
1 GAAATTATCGAAATACCCCTGTAGGGTA
35140281 -AAATTA
1 GAAATTA
35140287 CCATTTTGCC
Statistics
Matches: 143, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.04
27 129 0.90
28 8 0.06
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (28 bp):
GAAATTATCGAAATACCCCTGTAGGGTA
Found at i:35140151 original size:54 final size:54
Alignment explanation
Indices: 35140093--35140285 Score: 237
Period size: 54 Copynumber: 3.6 Consensus size: 54
35140083 TTGATTGTGA
* *
35140093 AATTATTGAAATACCCCTGTAGGGTAGAAATTTCGAAATACCCCTATAGGGTAG
1 AATTATTGAAATACCCTTGTAGGGTAGAAATTTCGAAATACCCCTGTAGGGTAG
* * * * *
35140147 AATTATTGAAATACCCTTATAGGATAG-AATTACCAAAATACCCCTGTAGGTTAG
1 AATTATTGAAATACCCTTGTAGGGTAGAAATT-TCGAAATACCCCTGTAGGGTAG
* *
35140201 AATTATCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCTTGTAGGGTAGAAATTTCGAAATACCCCTGTAGGGTAG
** * * *
35140255 AATTACCGAGATACCTTTGTGGGGTA-AAATT
1 AATTATTGAAATACCCTTGTAGGGTAGAAATT
35140286 ACCATTTTGC
Statistics
Matches: 118, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 8 0.07
54 107 0.91
55 3 0.03
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (54 bp):
AATTATTGAAATACCCTTGTAGGGTAGAAATTTCGAAATACCCCTGTAGGGTAG
Found at i:35140269 original size:81 final size:81
Alignment explanation
Indices: 35140101--35140261 Score: 234
Period size: 81 Copynumber: 2.0 Consensus size: 81
35140091 GAAATTATTG
* * *
35140101 AAATACCCCTGTAGGGTAGAAATTTCGAAATACCCCTATAGGGTAGAATTATTGAAATACCCTTA
1 AAATACCCCTGTAGGGTAGAAATTTCGAAATACCCCTATAGGGTAGAAATATCGAAATACCCCTA
35140166 TAGGATAGAATTACCA
66 TAGGATAGAATTACCA
* * *
35140182 AAATACCCCTGTAGGTTAG-AATTATCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCT
1 AAATACCCCTGTAGGGTAGAAATT-TCGAAATACCCCTATAGGGTAGAAATATCGAAATACCCCT
* *
35140246 GTAGGGTAGAATTACC
65 ATAGGATAGAATTACC
35140262 GAGATACCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 4 0.06
81 67 0.94
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAAATTTCGAAATACCCCTATAGGGTAGAAATATCGAAATACCCCTA
TAGGATAGAATTACCA
Found at i:35140286 original size:81 final size:81
Alignment explanation
Indices: 35140101--35140286 Score: 230
Period size: 81 Copynumber: 2.3 Consensus size: 81
35140091 GAAATTATTG
* * *
35140101 AAATACCCCTGTAGGGTAGAAATT-TCGAAATACCCCTATAGGGTAGAATTATTGAAATACCCTT
1 AAATACCCCTGTAGGGTA-AAATTATCGAAATACCCCTATAGGGTAGAAATATCGAAATACCCCT
35140165 ATAGGATAGAATTACCA
65 ATAGGATAGAATTACCA
* * * * *
35140182 AAATACCCCTGTAGGTTAGAATTATCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAAAATTATCGAAATACCCCTATAGGGTAGAAATATCGAAATACCCCTA
* *
35140247 TAGGGTAGAATTACCG
66 TAGGATAGAATTACCA
* ** *
35140263 AGATACCTTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAAAATTA
35140287 CCATTTTGCC
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 4 0.05
81 84 0.95
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAAAATTATCGAAATACCCCTATAGGGTAGAAATATCGAAATACCCCTA
TAGGATAGAATTACCA
Found at i:35140525 original size:27 final size:26
Alignment explanation
Indices: 35140487--35140569 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
35140477 CGGAGGAAGC
*
35140487 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
35140514 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
35140540 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
35140567 GTT
1 GTT
35140570 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:35140689 original size:22 final size:22
Alignment explanation
Indices: 35140657--35140715 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
35140647 CCCGTTAGTA
*
35140657 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
35140679 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
35140701 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
35140716 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:35140902 original size:27 final size:27
Alignment explanation
Indices: 35140880--35140946 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
35140870 TAGGTGGGTT
*
35140880 TGCCACATTATCTGAT-TCTGGTGGCTC
1 TGCCACAATATCT-ATATCTGGTGGCTC
*
35140907 TGCCACAATATCTATATCTGGTGACTC
1 TGCCACAATATCTATATCTGGTGGCTC
* *
35140934 TGTCACGATATCT
1 TGCCACAATATCT
35140947 GTTTTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTATATCTGGTGGCTC
Found at i:35141107 original size:6 final size:6
Alignment explanation
Indices: 35141096--35141305 Score: 220
Period size: 6 Copynumber: 34.8 Consensus size: 6
35141086 CTGTCACCTA
* *
35141096 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
35141144 ATTCTG ATTCTA ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
35141193 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
*
35141241 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
35141289 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
35141306 CATTTTGGTT
Statistics
Matches: 173, Mismatches: 14, Indels: 34
0.78 0.06 0.15
Matches are distributed among these distances:
5 13 0.08
6 148 0.86
7 9 0.05
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:35141133 original size:30 final size:30
Alignment explanation
Indices: 35141071--35141305 Score: 188
Period size: 30 Copynumber: 7.4 Consensus size: 30
35141061 TTGCATTCAC
* * *
35141071 ATTCTGATTATGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
35141102 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
*
35141132 ATTCTGATTCTGATTCTGATT-CTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTG-TTACTAA-----T-A-CTG
** *
35141169 ATTCTGATTCTGATTCTGATT-CTGTTACTA
1 ATTCTGATTCTGATTCTG-TTACTAATACTG
* *
35141199 ATAT-TGATTCTGATTCTGATTCTGTTACTGATTCTG
1 AT-TCTGATTCTG------ATTCTGTTACTAATACTG
*
35141235 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
35141265 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
35141295 ATTCTGATTCT
1 ATTCTGATTCT
35141306 CATTTTGGTT
Statistics
Matches: 172, Mismatches: 15, Indels: 35
0.77 0.07 0.16
Matches are distributed among these distances:
30 96 0.56
31 23 0.13
32 1 0.01
35 4 0.02
36 23 0.13
37 25 0.15
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:35141326 original size:30 final size:30
Alignment explanation
Indices: 35141108--35141305 Score: 260
Period size: 30 Copynumber: 6.6 Consensus size: 30
35141098 TCTGATTCTG
* * *
35141108 ATTCTGATTCTG-TTACTAATACTGATT-CTG
1 ATTCTGATTCTGATT-CTGATTCTG-TTACTA
* *
35141138 ATTCTGATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGATTCTGTTA-CTA
35141169 ATTCTGATTCTGATTCTGATTCTGTTACTA
1 ATTCTGATTCTGATTCTGATTCTGTTACTA
*
35141199 ATAT-TGATTCTGATTCTGATTCTGTTACTG
1 AT-TCTGATTCTGATTCTGATTCTGTTACTA
35141229 ATTCTGATTCTGATTCTGATTCTGTTACTA
1 ATTCTGATTCTGATTCTGATTCTGTTACTA
*
35141259 ATAT-TGATTCTGATTCTGATTCTGTTACTG
1 AT-TCTGATTCTGATTCTGATTCTGTTACTA
35141289 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
35141306 CATTTTGGTT
Statistics
Matches: 153, Mismatches: 8, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
29 3 0.02
30 119 0.78
31 31 0.20
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGATTCTGTTACTA
Found at i:35147778 original size:14 final size:14
Alignment explanation
Indices: 35147756--35147786 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
35147746 AAAATATAGT
*
35147756 CCGATTGAACCGAA
1 CCGAGTGAACCGAA
35147770 CCGAGTGAACCGAA
1 CCGAGTGAACCGAA
35147784 CCG
1 CCG
35147787 GCCAAGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.26, T:0.10
Consensus pattern (14 bp):
CCGAGTGAACCGAA
Found at i:35153877 original size:17 final size:16
Alignment explanation
Indices: 35153855--35153888 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
35153845 AGAGATGGCA
35153855 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
35153872 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
35153888 T
1 T
35153889 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:35161700 original size:50 final size:50
Alignment explanation
Indices: 35161643--35161769 Score: 148
Period size: 50 Copynumber: 2.5 Consensus size: 50
35161633 TGTGTTAGTG
* *
35161643 TAAGACCATGTCTGGGACATGGCATGGGCAC-AAAAAGAGGAGAGCCAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGC-CTAAAAAGAAGAGAGCCAGTA
* * ** * * * *
35161693 TAAGACCATGTCTGGGATATGGAATCGGCCTTGATATAAGAGAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCTAAAAAGAAGAGAGCCAGTA
35161743 TAAGACCATGTCTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
35161770 ACTCGATTTG
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 1 0.02
50 63 0.98
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.20
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCTAAAAAGAAGAGAGCCAGTA
Found at i:35161867 original size:43 final size:43
Alignment explanation
Indices: 35161740--35161899 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
35161730 AAGAGAGTCA
35161740 GTGTAAGACCATGTCTGGGACATGGCATCGACTCGATTTGTGATTAC
1 GTGTAAGACCATGTCTGGGACATGGCATCGA-T--A-TTGTGATTAC
* * * *
35161787 ATGTAAGA-CATGTTTGGGACATTGGCAT-TATATTGTGATTTC
1 GTGTAAGACCATGTCTGGGACA-TGGCATCGATATTGTGATTAC
* * *
35161829 GTGTAAGACCCTGTGTGGGACAGTGGCATCGATA-TGTGATAAC
1 GTGTAAGACCATGTCTGGGACA-TGGCATCGATATTGTGATTAC
* * * *
35161872 ATGTAAGACCATATCTAGGATATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
35161900 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 22 0.24
43 41 0.44
44 3 0.03
45 1 0.01
46 13 0.14
47 13 0.14
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGATATTGTGATTAC
Found at i:35161898 original size:85 final size:87
Alignment explanation
Indices: 35161740--35161900 Score: 195
Period size: 85 Copynumber: 1.9 Consensus size: 87
35161730 AAGAGAGTCA
* * * *
35161740 GTGTAAGACCATGTCTGGGACATGGCATCGACTCGATTTGTGATTACATGTAAGACATGTTTGGG
1 GTGTAAGACCATGTCTGGGACATGGCATCGACTC-A-TTGTGATAACATGTAAGACATATCTAGG
35161805 ACATTGGCATTATATTGTGATTTC
64 ACATTGGCATTATATTGTGATTTC
* *
35161829 GTGTAAGACCCTGTGTGGGACAGTGGCATCGA-T-A-TGTGATAACATGTAAGACCATATCTAGG
1 GTGTAAGACCATGTCTGGGACA-TGGCATCGACTCATTGTGATAACATGTAAGA-CATATCTAGG
*
35161891 ATA-TGGCATT
64 ACATTGGCATT
35161901 GTACGAGCTA
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
85 23 0.37
86 9 0.14
87 1 0.02
89 21 0.33
90 9 0.14
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (87 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACTCATTGTGATAACATGTAAGACATATCTAGGAC
ATTGGCATTATATTGTGATTTC
Found at i:35168791 original size:79 final size:82
Alignment explanation
Indices: 35168680--35168864 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
35168670 GCTACTCGTT
* *
35168680 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
35168743 AGATTTAGTAAC-TCGCA
65 AGATATAGTAACTTAGCA
* ** *
35168760 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCA
* *
35168823 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
35168840 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
35168865 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCA
GATATAGTAACTTAGCA
Found at i:35168864 original size:40 final size:40
Alignment explanation
Indices: 35168661--35168864 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
35168651 TGGAATTTAA
** *
35168661 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35168701 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35168741 CCAGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
35168780 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
35168820 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
35168860 CCGGA
1 CCGGA
35168865 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Done.