Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 114 of 253
Found at i:35885955 original size:36 final size:37
Alignment explanation
Indices: 35885844--35885959 Score: 157
Period size: 36 Copynumber: 3.2 Consensus size: 37
35885834 GCTCAGACGA
* * * *
35885844 AATCTCCACACGAAGTTATTGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
35885881 AATCTCCACACGTAGTC-TCGGGTCTTACCTGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
35885917 AATCTCCACACGTAGTCATCGGGTCTTACCCAGA-AT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
35885953 AAT-TCCA
1 AATCTCCA
35885960 AGTTTCATGT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
35 4 0.06
36 38 0.54
37 29 0.41
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:35886142 original size:48 final size:47
Alignment explanation
Indices: 35886090--35886182 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 47
35886080 CATCGCCTAC
35886090 ATATTTCACACTAGCCATTC-GCTTACCACATATACATATCTCATATAT
1 ATATTTCACACTAGCCA-TCGGCTTACCACATATACATAT-TCATATAT
* * *
35886138 ATATTTCACATTGGCCATCGGCTTACCACATATACATGTTCATAT
1 ATATTTCACACTAGCCATCGGCTTACCACATATACATATTCATAT
35886183 TCACCACATT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
47 8 0.20
48 33 0.80
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (47 bp):
ATATTTCACACTAGCCATCGGCTTACCACATATACATATTCATATAT
Found at i:35886268 original size:46 final size:46
Alignment explanation
Indices: 35886143--35886329 Score: 247
Period size: 46 Copynumber: 4.1 Consensus size: 46
35886133 TATATATATT
* * *
35886143 TCACATTGGCCA-TCGGCTTACCACATATA--CATGTTCATATTCA
1 TCACATTGGCCATTCGCCTTATCACATATATGCATGTTCACATTCA
* * *
35886186 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTC-GCCTTATCACATATATGCATGTTCACATTCA
35886233 TCACATTGGCCATTCGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGCCTTATCACATATATGCATGTTCACATTCA
* * **
35886279 TCACATTGGCCATTCGCCTTATCTCATATA-ACACATTCACATTCA
1 TCACATTGGCCATTCGCCTTATCACATATATGCATGTTCACATTCA
35886324 TCACAT
1 TCACAT
35886330 AAACTAATCA
Statistics
Matches: 127, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
43 11 0.09
44 2 0.02
45 30 0.24
46 58 0.46
47 26 0.20
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (46 bp):
TCACATTGGCCATTCGCCTTATCACATATATGCATGTTCACATTCA
Found at i:35890213 original size:25 final size:26
Alignment explanation
Indices: 35890161--35890216 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
35890151 GGTTAAAGGA
35890161 ATTCGACACACACAGTGCCTCTAATC
1 ATTCGACACACACAGTGCCTCTAATC
* *
35890187 ATTC-ACACACATAGTG-CTCTTATTC
1 ATTCGACACACACAGTGCCTC-TAATC
35890212 ATTCG
1 ATTCG
35890217 TTATTACACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 3 0.12
25 19 0.73
26 4 0.15
ACGTcount: A:0.29, C:0.30, G:0.11, T:0.30
Consensus pattern (26 bp):
ATTCGACACACACAGTGCCTCTAATC
Found at i:35890424 original size:40 final size:40
Alignment explanation
Indices: 35890392--35890663 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
35890382 CCAGCATGAT
* * *
35890392 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
35890432 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
35890472 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
35890512 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
35890552 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
35890592 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
35890632 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
35890664 CTCAATTCTC
Statistics
Matches: 217, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:35891986 original size:37 final size:37
Alignment explanation
Indices: 35891927--35892035 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
35891917 AGCTCAGACG
* * *
35891927 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
35891964 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
35892001 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
35892036 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:35892333 original size:47 final size:47
Alignment explanation
Indices: 35892240--35892433 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
35892230 TATATATATT
* * * *
35892240 TCACATTGGCCATTCGGCTTTACCACATATATACATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
35892287 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
35892334 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
35892381 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
35892428 TCACAT
1 TCACAT
35892434 AAAATCTTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:35892360 original size:22 final size:22
Alignment explanation
Indices: 35892333--35892404 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
35892323 GCTCACATTC
35892333 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
35892355 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
35892379 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
35892402 ATC
1 ATC
35892405 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:35895423 original size:40 final size:40
Alignment explanation
Indices: 35895346--35895652 Score: 372
Period size: 40 Copynumber: 7.5 Consensus size: 40
35895336 ACCCAAGTAT
* *
35895346 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* *
35895385 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
35895425 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
35895465 CTTCGAGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
35895508 CTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
35895548 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
35895591 CTTCGGGACTTAGCCCAGATATAGTAACCT-GCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCA-CTAGCACAAATGC
35895631 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
35895653 CATCTGAATA
Statistics
Matches: 232, Mismatches: 23, Indels: 25
0.83 0.08 0.09
Matches are distributed among these distances:
39 12 0.05
40 150 0.65
41 1 0.00
43 67 0.29
44 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:35895542 original size:83 final size:83
Alignment explanation
Indices: 35895346--35895648 Score: 445
Period size: 83 Copynumber: 3.7 Consensus size: 83
35895336 ACCCAAGTAT
* * * * * *
35895346 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
*
35895410 C-ACTA---GCATAAATGC
65 CAACTACTCGCACAAATGC
** * * *
35895425 CTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGAGACTTAGCCCGGGTATAGC
1 CTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGC
35895490 AACTACTCGCACAAATGC
66 AACTACTCGCACAAATGC
35895508 CTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGC
1 CTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGC
35895573 AACTACTCGCACAAATGC
66 AACTACTCGCACAAATGC
*
35895591 CTTCGGGACTTAGCCCAGATATAGTAACCTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
35895649 ATATCATCTG
Statistics
Matches: 204, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
79 13 0.06
80 47 0.23
83 144 0.71
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (83 bp):
CTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGC
AACTACTCGCACAAATGC
Found at i:35895625 original size:123 final size:121
Alignment explanation
Indices: 35895346--35895652 Score: 424
Period size: 123 Copynumber: 2.5 Consensus size: 121
35895336 ACCCAAGTAT
* *
35895346 CTTCGGGATTTAG-CCGGATATAGCAA-CTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGCAACCTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* * *
35895409 TCACTAGCATAAATGCCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATGC
66 TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
35895465 CTTCGAGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATATAGCAAC--CTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
* *
35895530 AGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
64 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
35895591 CTTCGGGACTTAGCCCAGATATAGTAACCT-GCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGCAACCTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
35895653 CATCTGAATA
Statistics
Matches: 165, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
119 11 0.07
120 12 0.07
122 1 0.01
123 105 0.64
124 2 0.01
126 34 0.21
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (121 bp):
CTTCGGGACTTAGCCCGGATATAGCAACCTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:35898008 original size:20 final size:20
Alignment explanation
Indices: 35897983--35898050 Score: 136
Period size: 20 Copynumber: 3.4 Consensus size: 20
35897973 TAGCATACTT
35897983 AACAAAATTTCAAATTTTTG
1 AACAAAATTTCAAATTTTTG
35898003 AACAAAATTTCAAATTTTTG
1 AACAAAATTTCAAATTTTTG
35898023 AACAAAATTTCAAATTTTTG
1 AACAAAATTTCAAATTTTTG
35898043 AACAAAAT
1 AACAAAAT
35898051 ATAACCTAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (20 bp):
AACAAAATTTCAAATTTTTG
Found at i:35917110 original size:25 final size:25
Alignment explanation
Indices: 35917081--35917128 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
35917071 TTATAACATG
* * *
35917081 AAAATAACCGTTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
*
35917106 AAAATGACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
35917129 GTTTATGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:35917195 original size:20 final size:20
Alignment explanation
Indices: 35917172--35917210 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
35917162 TAGACATGGT
35917172 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
35917192 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
35917211 TGTAATCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:35917292 original size:23 final size:23
Alignment explanation
Indices: 35917262--35917310 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
35917252 AGGAAGTGAA
35917262 AAAGGGCTTATGCCACAGTTATT
1 AAAGGGCTTATGCCACAGTTATT
*
35917285 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCACAGTTATT
35917308 AAA
1 AAA
35917311 AGAGGCTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCACAGTTATT
Found at i:35917327 original size:25 final size:23
Alignment explanation
Indices: 35917262--35917331 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
35917252 AGGAAGTGAA
* *
35917262 AAAGGGCTTATGCCACAGTTATT
1 AAAGGGCTTAGGCCCCAGTTATT
*
35917285 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTAGGCCCCAGTTATT
35917308 AAAAGAGGC-TAGGCCTCCAGTTAT
1 -AAAG-GGCTTAGGCC-CCAGTTAT
35917332 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
23 22 0.52
24 9 0.21
25 11 0.26
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTAGGCCCCAGTTATT
Found at i:35917562 original size:31 final size:31
Alignment explanation
Indices: 35917524--35917587 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
35917514 CGTTTACAGT
*
35917524 AAAGGCTTCGGCCCAGTAATATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
35917555 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
35917586 AA
1 AA
35917588 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:35925438 original size:11 final size:11
Alignment explanation
Indices: 35925402--35925457 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
35925392 CATGGTATGT
35925402 ATGATATGCAC
1 ATGATATGCAC
* *
35925413 ATGACATG--T
1 ATGATATGCAC
35925422 ATGATATGCAC
1 ATGATATGCAC
*
35925433 ATGATATG--T
1 ATGATATGCAC
35925442 ATGATATGCAC
1 ATGATATGCAC
35925453 ATGAT
1 ATGAT
35925458 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:35925457 original size:20 final size:20
Alignment explanation
Indices: 35925391--35925457 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
35925381 ATTTTGATAG
*
35925391 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
35925411 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
35925431 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
35925451 ACATGAT
1 ACATGAT
35925458 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:35925602 original size:23 final size:24
Alignment explanation
Indices: 35925507--35925608 Score: 140
Period size: 23 Copynumber: 4.4 Consensus size: 24
35925497 GAGGAAGTGA
35925507 AAAAGGGCTTATGCCCCAGTT-TT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
35925530 TAAAGGGATTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
35925554 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
35925576 AAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
35925599 AAAAGAGGCT
1 AAAAG-GGCT
35925609 AGACCTCGAG
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
22 10 0.14
23 56 0.78
24 6 0.08
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:35925857 original size:31 final size:31
Alignment explanation
Indices: 35925816--35925879 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
35925806 CGTTTACAGT
35925816 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
35925847 AAAGGTTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
35925878 AA
1 AA
35925880 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:35946914 original size:46 final size:45
Alignment explanation
Indices: 35946860--35947027 Score: 129
Period size: 46 Copynumber: 3.6 Consensus size: 45
35946850 TCTCGTAGCC
* *
35946860 GATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTTGAGGCT
1 GATGCATGTCCCAAACATGTCTTACACTGGCTT-CATCTTGAGGCT
* * * * ** * *
35946906 GATGCATGTCCCAAACATGTCTTATACTAGCACTCGTCTCAATGCC
1 GATGCATGTCCCAAACATGTCTTACACTGGC-TTCATCTTGAGGCT
* ** *
35946952 GATGCCATATCCCAAACATGTTCTTACACTGGCTCTCATAATGTGGCT
1 GATG-CATGTCCCAAACATG-TCTTACACTGGCT-TCATCTTGAGGCT
* * * *
35947000 AATGTATGTCCTAGACATGTCTTACACT
1 GATGCATGTCCCAAACATGTCTTACACT
35947028 AGCTCACACA
Statistics
Matches: 91, Mismatches: 27, Indels: 8
0.72 0.21 0.06
Matches are distributed among these distances:
46 47 0.52
47 26 0.29
48 18 0.20
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTTCATCTTGAGGCT
Found at i:35947018 original size:94 final size:92
Alignment explanation
Indices: 35946857--35947030 Score: 215
Period size: 94 Copynumber: 1.9 Consensus size: 92
35946847 CCATCTCGTA
* * * ** *
35946857 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTTGAGGCTGATGCATGTCCCAAAC
1 GCCGATGCATATCCCAAACATGTCTTACACTGGCTTACATAATGAGGCTAATGCATGTCCCAAAC
*
35946922 ATGTCTTATACTAGCACTCGTCTCAAT
66 ATGTCTTACACTAGCACTCGTCTCAAT
* * *
35946949 GCCGATGCCATATCCCAAACATGTTCTTACACTGGCTCT-CATAATGTGGCTAATGTATGTCCTA
1 GCCGATG-CATATCCCAAACATG-TCTTACACTGGCT-TACATAATGAGGCTAATGCATGTCCCA
*
35947013 GACATGTCTTACACTAGC
63 AACATGTCTTACACTAGC
35947031 TCACACAAGT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
92 7 0.10
93 12 0.18
94 48 0.71
95 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (92 bp):
GCCGATGCATATCCCAAACATGTCTTACACTGGCTTACATAATGAGGCTAATGCATGTCCCAAAC
ATGTCTTACACTAGCACTCGTCTCAAT
Found at i:35952837 original size:30 final size:31
Alignment explanation
Indices: 35952773--35952843 Score: 135
Period size: 31 Copynumber: 2.3 Consensus size: 31
35952763 TATACTGGGT
35952773 CGAAGCCTTTTCATAAATCATATCACTAGGC
1 CGAAGCCTTTTCATAAATCATATCACTAGGC
35952804 CGAAGCCTTTTCATAAATCATATCACT-GGC
1 CGAAGCCTTTTCATAAATCATATCACTAGGC
35952834 CGAAGCCTTT
1 CGAAGCCTTT
35952844 ACTGTAAGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 13 0.32
31 27 0.68
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (31 bp):
CGAAGCCTTTTCATAAATCATATCACTAGGC
Found at i:35953097 original size:25 final size:25
Alignment explanation
Indices: 35953063--35953132 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
35953053 CTCTTTTAAT
*
35953063 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
35953088 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
35953113 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
35953133 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:35954080 original size:27 final size:27
Alignment explanation
Indices: 35954050--35954102 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
35954040 GGGTGTTTTG
35954050 GTAAATCTACAAACCAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* * * *
35954077 GTAATTTTATAAACCAATGGTATTTC
1 GTAAATCTACAAACCAAGGGTATTTC
35954103 TATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:35954155 original size:56 final size:54
Alignment explanation
Indices: 35954037--35954274 Score: 196
Period size: 54 Copynumber: 4.4 Consensus size: 54
35954027 TTTCATCCTA
* * * * * *
35954037 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTATAAAC
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTATAAAC
* * * * *
35954091 CAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-TCAAGGGTATTTTAGTAATTTTATAAAC
* * * * * * *
35954147 CAGGGGTATTTTAGTAATTTTACAAATTAAGGGTATTTTGGTAGTTTCACAGAC
1 CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTATAAAC
* * * * *
35954201 C-AGTGGTATTTTGGTAATTTT-CAAA-CTATGGGCATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTAGTAATTTTACAAATC-AAGGGTATTTTAGTAATTTTATAAAC
35954254 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
35954275 TTAAACCGAA
Statistics
Matches: 144, Mismatches: 33, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
53 41 0.28
54 51 0.35
55 17 0.12
56 35 0.24
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTATAAAC
Found at i:35954288 original size:27 final size:27
Alignment explanation
Indices: 35954060--35954286 Score: 156
Period size: 27 Copynumber: 8.3 Consensus size: 27
35954050 GTAAATCTAC
* *
35954060 AAACCAAGGGTATTTCAGTAATTTTAT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
35954087 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
* *
35954113 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTTAGTAATTTTGT
* * **
35954143 AAATCAGGGGTATTTTAGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
** * * ***
35954170 AAATTAAGGGTATTTTGGTAGTTTCAC
1 AAACCAAGGGTATTTTAGTAATTTTGT
* * *
35954197 AGACC-AGTGGTATTTTGGTAATTTT-C
1 AAACCAAG-GGTATTTTAGTAATTTTGT
* * * *
35954223 AAACTATGGGCATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
35954250 AAACCAAGGGTATTTTAGTAATTTTTT
1 AAACCAAGGGTATTTTAGTAATTTTGT
35954277 AAACCGAAGG
1 AAACC-AAGG
35954287 TAAAATAGTA
Statistics
Matches: 161, Mismatches: 29, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
26 23 0.14
27 108 0.67
28 12 0.07
29 17 0.11
30 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:35954405 original size:81 final size:81
Alignment explanation
Indices: 35954267--35954420 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 81
35954257 GGGTATTTTA
* * * *
35954267 GTAATTTTTTAAACCGAAGGTAAAATAGTAGTTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTATAAACCGAAGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACA
35954332 AATTGAGGGTAAAATG
66 AATTGAGGGTAAAATG
* * * **** *
35954348 GTAATTCTATAAATCGATGGTAAAATGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACA
1 GTAATTCTATAAACCGAAGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACA
35954413 AATTGAGG
66 AATTGAGG
35954421 ACATTTTAGT
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (81 bp):
GTAATTCTATAAACCGAAGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACA
AATTGAGGGTAAAATG
Found at i:35954407 original size:27 final size:27
Alignment explanation
Indices: 35954267--35954396 Score: 161
Period size: 27 Copynumber: 4.8 Consensus size: 27
35954257 GGGTATTTTA
* * * * *
35954267 GTAATTTTTTAAACCGAAGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
35954294 GTAGTTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
35954321 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
35954348 GTAATTCTATAAATCGATGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
35954375 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
35954397 CTTTGGTAAT
Statistics
Matches: 88, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:35954433 original size:81 final size:81
Alignment explanation
Indices: 35954261--35954434 Score: 186
Period size: 81 Copynumber: 2.1 Consensus size: 81
35954251 AACCAAGGGT
* * *
35954261 ATTTTAGTAATTTTTTAAACCGAAGGTAAAATAGTAGTTCTGTAAATCGAGGGTAAAACGGTAAT
1 ATTTTAGTAATTCTATAAACCGAAGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
* **
35954326 TCTATAAATTGAGGGT
66 TCTACAAATTGAGGAC
*** * * * * ****
35954342 AAAATGGTAATTCTATAAATCGATGGTAAAATGGTAATTCTGTAAATCGAGGGTACTTTGGTAAT
1 ATTTTAGTAATTCTATAAACCGAAGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
*
35954407 TTTACAAATTGAGGAC
66 TCTACAAATTGAGGAC
35954423 ATTTTAGTAATT
1 ATTTTAGTAATT
35954435 TGGTAAACTA
Statistics
Matches: 71, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.36
Consensus pattern (81 bp):
ATTTTAGTAATTCTATAAACCGAAGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
TCTACAAATTGAGGAC
Found at i:35956750 original size:30 final size:31
Alignment explanation
Indices: 35956674--35956756 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
35956664 TCAGTCTCGA
35956674 CATAT-ACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
*
35956704 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
35956735 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTAGGCCGAAGCCTTT
35956757 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTTCATAAAT
Found at i:35957010 original size:25 final size:25
Alignment explanation
Indices: 35956976--35957045 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
35956966 CTCTTTTAAT
* *
35956976 AACTGAGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
35957001 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
35957026 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
35957046 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:35957910 original size:27 final size:27
Alignment explanation
Indices: 35957854--35957931 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
35957844 GGGCATATTC
* *
35957854 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
* *
35957881 GTCACTTTACCCTATAGGGGCT-TTATG
1 GTCATTTTACCCTATAGGGG-TATTACG
*
35957908 GTCTTTTTA-CCTATTAGGGGTATT
1 GTCATTTTACCCTA-TAGGGGTATT
35957932 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:35958002 original size:27 final size:27
Alignment explanation
Indices: 35957949--35958192 Score: 159
Period size: 27 Copynumber: 9.0 Consensus size: 27
35957939 TTTCATCCTA
* * * **
35957949 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
**
35957976 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** ** *
35958003 CAATAGTATTTCT-AAAATTTT-TAGAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT--AAA-C
* *
35958032 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* ** *
35958059 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** **** *
35958086 TGAGGGTATTTTGGTAATTCCACAGAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* **
35958113 CAATGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* *
35958140 TAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
*
35958167 CAAGGGTATTTTAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTGTAAA
35958193 TTGAGGGTAA
Statistics
Matches: 169, Mismatches: 42, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
26 1 0.01
27 145 0.86
28 7 0.04
29 15 0.09
30 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:35958173 original size:81 final size:81
Alignment explanation
Indices: 35958036--35958185 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 81
35958026 GAAAGTCAAG
* ** *** *
35958036 GGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGT
35958101 AATTCCACAGACCAAT
66 AATTCCACAGACCAAT
**
35958117 GGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAG
1 GGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG
35958181 TAATT
65 TAATT
35958186 TTGTAAATTG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.02
81 58 0.98
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGT
AATTCCACAGACCAAT
Found at i:35958199 original size:27 final size:27
Alignment explanation
Indices: 35958034--35958348 Score: 139
Period size: 27 Copynumber: 11.7 Consensus size: 27
35958024 TAGAAAGTCA
* * *
35958034 AGGGTATTTTTGTAATTTTGTAAA-TC
1 AGGGTATTTTGGTAATTTTATAAATTG
*
35958060 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATTG
** * * ***
35958088 AGGGTATTTTGGTAATTCCACAGACCA
1 AGGGTATTTTGGTAATTTTATAAATTG
* * *
35958115 ATGGTATTTTGGTAATTTTACAAACT-
1 AGGGTATTTTGGTAATTTTATAAATTG
* ***
35958141 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTATAAATTG
* *
35958169 AGGGTATTTTAGTAATTTTGTAAATTG
1 AGGGTATTTTGGTAATTTTATAAATTG
*** * * * *
35958196 AGGGTAAAATAGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATTG
***** *
35958223 AGGGTAAAACAGTAATTCTATAAATTG
1 AGGGTATTTTGGTAATTTTATAAATTG
*** * **
35958250 AGGGTAAAATGGTAATTCTATAAATCA
1 AGGGTATTTTGGTAATTTTATAAATTG
**** * * *
35958277 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATTG
* *
35958304 AGGGTACTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTATAAATTG
** *
35958331 AGGACATTTTAGTAATTT
1 AGGGTATTTTGGTAATTT
35958349 GGTAAACTAA
Statistics
Matches: 235, Mismatches: 50, Indels: 7
0.80 0.17 0.02
Matches are distributed among these distances:
26 2 0.01
27 230 0.98
28 3 0.01
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATTG
Found at i:35958238 original size:81 final size:81
Alignment explanation
Indices: 35958153--35958309 Score: 179
Period size: 81 Copynumber: 1.9 Consensus size: 81
35958143 GGGTATTTTG
* * *** * * ** *
35958153 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTATAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTA
35958218 AATCGAGGGTAAAACA
66 AATCGAGGGTAAAACA
*** * *
35958234 GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTATAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTA
35958299 AATCGAGGGTA
66 AATCGAGGGTA
35958310 CTTTGGTAAT
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (81 bp):
GTAATTCTATAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACA
Found at i:35958320 original size:54 final size:54
Alignment explanation
Indices: 35958179--35958309 Score: 199
Period size: 54 Copynumber: 2.4 Consensus size: 54
35958169 AGGGTATTTT
* * * *
35958179 AGTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAC
*
35958233 AGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAC
* *
35958287 GGTAATTCTGTAAATCGAGGGTA
1 AGTAATTCTGTAAATTGAGGGTA
35958310 CTTTGGTAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (54 bp):
AGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAC
Found at i:35958346 original size:81 final size:81
Alignment explanation
Indices: 35958174--35958347 Score: 177
Period size: 81 Copynumber: 2.1 Consensus size: 81
35958164 AACCAAGGGT
* * ** *
35958174 ATTTTAGTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACAGTAAT
1 ATTTTAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAAT
* **
35958239 TCTATAAATTGAGGGT
66 TCTACAAATTGAGGAC
*** * * *****
35958255 AAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTACTTTGGTAAT
1 ATTTTAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAAT
*
35958320 TTTACAAATTGAGGAC
66 TCTACAAATTGAGGAC
35958336 ATTTTAGTAATT
1 ATTTTAGTAATT
35958348 TGGTAAACTA
Statistics
Matches: 70, Mismatches: 23, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (81 bp):
ATTTTAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAAT
TCTACAAATTGAGGAC
Found at i:35960646 original size:30 final size:31
Alignment explanation
Indices: 35960570--35960652 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
35960560 TCAGTCTCGA
35960570 CATAT-ACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
*
35960600 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
35960631 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTAGGCCGAAGCCTTT
35960653 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTTCATAAAT
Found at i:35960909 original size:25 final size:25
Alignment explanation
Indices: 35960872--35960941 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
35960862 CTCTTTTAAT
* * *
35960872 AACTGAGGTAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
35960897 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
35960922 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
35960942 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:35961106 original size:26 final size:25
Alignment explanation
Indices: 35961076--35961125 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
35961066 AATCCATCAA
* *
35961076 CCACATAGTCCAAGTCAGTCATTTTC
1 CCACA-AGGCCAAGACAGTCATTTTC
*
35961102 CCACAAGGGCAAGACAGTCATTTT
1 CCACAAGGCCAAGACAGTCATTTT
35961126 TCATATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (25 bp):
CCACAAGGCCAAGACAGTCATTTTC
Found at i:35961899 original size:27 final size:27
Alignment explanation
Indices: 35961846--35962089 Score: 159
Period size: 27 Copynumber: 9.0 Consensus size: 27
35961836 TTTCATCCTA
* * * **
35961846 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
*
35961873 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** ** *
35961900 CAATAGTATTTCT-AAAATTTT-TAGAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT--AAA-C
* *
35961929 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * ** *
35961956 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** **** *
35961983 TGAGGGTATTTTGGTAATTCCACAGAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* **
35962010 CAATGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* *
35962037 TAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
*
35962064 CAAGGGTATTTTAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTGTAAA
35962090 TTGAGGGTAA
Statistics
Matches: 171, Mismatches: 40, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
26 1 0.01
27 146 0.85
28 8 0.05
29 15 0.09
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:35962070 original size:81 final size:81
Alignment explanation
Indices: 35961933--35962082 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
35961923 GAAAGTCAAG
* ** * *** *
35961933 GGTATTTTTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGT
35961998 AATTCCACAGACCAAT
66 AATTCCACAGACCAAT
**
35962014 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGT
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGT
35962079 AATT
66 AATT
35962083 TTGTAAATTG
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGT
AATTCCACAGACCAAT
Found at i:35962096 original size:27 final size:27
Alignment explanation
Indices: 35961931--35962251 Score: 142
Period size: 27 Copynumber: 11.9 Consensus size: 27
35961921 TAGAAAGTCA
*
35961931 AGGGTATTTTTGTAATTTTGTAAATT-
1 AGGGTATTTTGGTAATTTTGTAAATTG
**
35961957 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTGTAAATTG
**** * ***
35961985 AGGGTATTTTGGTAATTCCACAGACCA
1 AGGGTATTTTGGTAATTTTGTAAATTG
* ** *
35962012 ATGGTATTTTGGTAATTTTACAAACT-
1 AGGGTATTTTGGTAATTTTGTAAATTG
***
35962038 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTGTAAATTG
*
35962066 AGGGTATTTTAGTAATTTTGTAAATTG
1 AGGGTATTTTGGTAATTTTGTAAATTG
*** * * *
35962093 AGGGTAAAATAGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATTG
***** *
35962120 AGGGTAAAACAGTAATTCTGTAAATTG
1 AGGGTATTTTGGTAATTTTGTAAATTG
*** * * * **
35962147 AGGGTAAAATGGCAATTCTATAAATCA
1 AGGGTATTTTGGTAATTTTGTAAATTG
**** * *
35962174 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATTG
* **
35962201 AGGGTACTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTGTAAATTG
** * *
35962228 AGGACATTTTAGTAATTTGGTAAA
1 AGGGTATTTTGGTAATTTTGTAAA
35962252 CTAAAGTATT
Statistics
Matches: 237, Mismatches: 54, Indels: 7
0.80 0.18 0.02
Matches are distributed among these distances:
26 2 0.01
27 233 0.98
28 2 0.01
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTGTAAATTG
Found at i:35962108 original size:54 final size:54
Alignment explanation
Indices: 35962076--35962206 Score: 199
Period size: 54 Copynumber: 2.4 Consensus size: 54
35962066 AGGGTATTTT
* *
35962076 AGTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAAC
* * *
35962130 AGTAATTCTGTAAATTGAGGGTAAAATGGCAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAAC
* *
35962184 GGTAATTCTGTAAATCGAGGGTA
1 AGTAATTCTGTAAATTGAGGGTA
35962207 CTTTGGTAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (54 bp):
AGTAATTCTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:35962135 original size:81 final size:81
Alignment explanation
Indices: 35962050--35962206 Score: 179
Period size: 81 Copynumber: 1.9 Consensus size: 81
35962040 GGGTATTTTG
* *** * * * ** *
35962050 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTGTA
1 GTAATTCTGTAAACCAAGGGTAAAATAGCAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTA
35962115 AATCGAGGGTAAAACA
66 AATCGAGGGTAAAACA
*** * *
35962131 GTAATTCTGTAAATTGAGGGTAAAATGGCAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTGTAAACCAAGGGTAAAATAGCAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTA
35962196 AATCGAGGGTA
66 AATCGAGGGTA
35962207 CTTTGGTAAT
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
GTAATTCTGTAAACCAAGGGTAAAATAGCAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACA
Found at i:35964853 original size:40 final size:40
Alignment explanation
Indices: 35964796--35964994 Score: 335
Period size: 40 Copynumber: 5.0 Consensus size: 40
35964786 AGGATGATAA
*
35964796 CCGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
35964836 TCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
35964876 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
35964916 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
35964956 CCGGGCTAAGTCCCGAAAGGCAATTGTGCGAGTTACTAT
1 CCGGGCTAAGTCCCG-AAGGCATTTGTGCGAGTTACTAT
35964995 AACTGGGCTG
Statistics
Matches: 148, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 127 0.86
41 21 0.14
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:35966607 original size:28 final size:27
Alignment explanation
Indices: 35966544--35966695 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
35966534 ATATTAAGTC
* * *
35966544 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
35966571 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
35966599 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
35966626 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
35966654 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
35966681 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35966696 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:35966628 original size:55 final size:55
Alignment explanation
Indices: 35966544--35966695 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
35966534 ATATTAAGTC
* * *
35966544 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
35966599 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
35966654 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
35966696 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:35974611 original size:28 final size:27
Alignment explanation
Indices: 35974548--35974672 Score: 196
Period size: 27 Copynumber: 4.6 Consensus size: 27
35974538 ATATTAAGTC
* *
35974548 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
35974575 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
35974603 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
35974630 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
35974658 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35974673 GCACAATTTA
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
27 48 0.52
28 45 0.48
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:35974632 original size:55 final size:55
Alignment explanation
Indices: 35974548--35974672 Score: 214
Period size: 55 Copynumber: 2.3 Consensus size: 55
35974538 ATATTAAGTC
* *
35974548 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
35974603 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
35974658 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35974673 GCACAATTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:35984232 original size:40 final size:40
Alignment explanation
Indices: 35984177--35984434 Score: 385
Period size: 40 Copynumber: 6.5 Consensus size: 40
35984167 CGGATGATAA
35984177 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
35984217 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
35984257 CCGAGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
35984297 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* **
35984337 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * *
35984377 CTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTT
**
35984417 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
35984435 TACTTGGTTG
Statistics
Matches: 199, Mismatches: 18, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 16 0.08
40 183 0.92
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:35987363 original size:30 final size:31
Alignment explanation
Indices: 35987292--35987369 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
35987282 CACGACACAT
*
35987292 ACTGGGCCGTAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
35987323 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
35987354 ACT-GGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
35987370 ACTGTAAGCG
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 13 0.28
31 33 0.72
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:35987603 original size:24 final size:23
Alignment explanation
Indices: 35987562--35987633 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
35987552 ACTTTATCAT
**
35987562 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACT-GAGGCAAAGCC-CTTTTA
*
35987587 ATAACTGAGGCAAAGCCCTTTTTG
1 ATAACTGAGGCAAAGCCC-TTTTA
*
35987611 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGAGGCAAAGCCCTTTT
35987634 CGGTAAACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 1 0.02
24 19 0.46
25 21 0.51
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
ATAACTGAGGCAAAGCCCTTTTA
Found at i:35987617 original size:25 final size:25
Alignment explanation
Indices: 35987589--35987658 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
35987579 CTCTTTTAAT
*
35987589 AACTGAGGCAAAGCCCTTTTTGATA
1 AACTGAGGCAAAGCCCTTTTCGATA
* *
35987614 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGAGGCAAAGCCCTTTTCGATA
*
35987639 AACT-AGGGCATAGCCCTTTT
1 AACTGA-GGCAAAGCCCTTTT
35987659 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTGAGGCAAAGCCCTTTTCGATA
Found at i:35988596 original size:27 final size:27
Alignment explanation
Indices: 35988543--35988787 Score: 181
Period size: 27 Copynumber: 9.0 Consensus size: 27
35988533 TTTCATCCTA
* * * **
35988543 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
**
35988570 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* * *
35988597 CAATGGTATTTCT-ATAATTTT-TAAAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT--AAA-C
* *
35988626 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* ** *
35988653 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGTAAAC
** *** *
35988680 TGAGGGTATTTTGGTAATTTCACAGAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
**
35988707 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTGTAAAC
* *
35988734 TAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
*
35988761 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
35988788 TGAGGGTAAA
Statistics
Matches: 177, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
26 3 0.02
27 148 0.84
28 8 0.05
29 17 0.10
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:35988767 original size:81 final size:80
Alignment explanation
Indices: 35988542--35988780 Score: 212
Period size: 81 Copynumber: 2.9 Consensus size: 80
35988532 ATTTCATCCT
* * * * * ** *
35988542 ACAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATT
1 ACAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
*
35988607 TCTATAATTTTTAAAAAG
66 T-TGTAA--TTTAAAAAG
* * ** ** ***
35988625 TCAAGGGTATTTTTGTAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTAT
1 ACAAGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
* *
35988689 TTTGGTAATTT-CACAG
65 TTT-GTAATTTAAAAAG
*
35988705 ACCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
1 ACAAG-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
35988770 TTTAGTAATTT
65 TTT-GTAATTT
35988781 TGTAAACTGA
Statistics
Matches: 121, Mismatches: 31, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
80 6 0.05
81 62 0.51
82 2 0.02
83 51 0.42
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (80 bp):
ACAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
TTGTAATTTAAAAAG
Found at i:35988769 original size:54 final size:54
Alignment explanation
Indices: 35988543--35988795 Score: 240
Period size: 54 Copynumber: 4.6 Consensus size: 54
35988533 TTTCATCCTA
* * * * **
35988543 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAAC
* * * * * *
35988597 CAATGGTATTTCT-ATAATTTTTAAAAAGTCAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTTTGGTAATTTTGTAAAC
* * * *** *
35988653 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAGAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAAC
*
35988707 C-AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAAC
* ** *
35988761 CAAGGGTATTTTAGTAATTTTGTAAACTGAGGGTA
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTA
35988796 AAACAGTAAT
Statistics
Matches: 157, Mismatches: 36, Indels: 12
0.77 0.18 0.06
Matches are distributed among these distances:
53 1 0.01
54 102 0.65
55 19 0.12
56 35 0.22
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:35988822 original size:81 final size:82
Alignment explanation
Indices: 35988737--35988950 Score: 218
Period size: 81 Copynumber: 2.6 Consensus size: 82
35988727 TACAAACTAG
* * **
35988737 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAACT-GAGGGTAAAACA
1 GGGTAATTTGGTAATTTTGCAAATTAAGGGTATTTTAGTAATTTTGTAAACTCGAGGGTAAAACA
35988801 GTAATTCTGTAAATCGA
66 GTAATTCTGTAAATCGA
*** * * *** * * * *
35988818 GGGTAAAACGGTAATTCTGCAAATTGAGGGTAAAATGGTAATTCTATAAA-TCGAGGGTAAAACG
1 GGGTAATTTGGTAATTTTGCAAATTAAGGGTATTTTAGTAATTTTGTAAACTCGAGGGTAAAACA
35988882 GTAATTCTGTAAATCGA
66 GTAATTCTGTAAATCGA
* * * *
35988899 GAGTACTTTGGTAATTTTACAAATTAA-GGTCATTTTAGTAATTTGGTAAACT
1 GGGTAATTTGGTAATTTTGCAAATTAAGGGT-ATTTTAGTAATTTTGTAAACT
35988951 AAAGTATTCT
Statistics
Matches: 99, Mismatches: 31, Indels: 5
0.73 0.23 0.04
Matches are distributed among these distances:
80 4 0.04
81 94 0.95
82 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (82 bp):
GGGTAATTTGGTAATTTTGCAAATTAAGGGTATTTTAGTAATTTTGTAAACTCGAGGGTAAAACA
GTAATTCTGTAAATCGA
Found at i:35988914 original size:27 final size:27
Alignment explanation
Indices: 35988774--35988899 Score: 182
Period size: 27 Copynumber: 4.7 Consensus size: 27
35988764 GGGTATTTTA
* *
35988774 GTAATTTTGTAAA-CTGAGGGTAAAACA
1 GTAATTCTGTAAATC-GAGGGTAAAACG
35988801 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
35988828 GTAATTCTGCAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
35988855 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
35988882 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
35988900 AGTACTTTGG
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 87 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:35990025 original size:30 final size:31
Alignment explanation
Indices: 35989991--35990054 Score: 112
Period size: 30 Copynumber: 2.1 Consensus size: 31
35989981 AAAATGATCA
*
35989991 AAATTAATCAATATTTATT-TAAAATTAAGT
1 AAATTAATCAATACTTATTATAAAATTAAGT
35990021 AAATTAATCAATACTTATTATAAAATTAAGT
1 AAATTAATCAATACTTATTATAAAATTAAGT
35990052 AAA
1 AAA
35990055 ATTCAACATG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 18 0.56
31 14 0.44
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (31 bp):
AAATTAATCAATACTTATTATAAAATTAAGT
Found at i:35992575 original size:40 final size:40
Alignment explanation
Indices: 35992494--35992754 Score: 341
Period size: 40 Copynumber: 6.6 Consensus size: 40
35992484 CAACCAAGTA
* ** *
35992494 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
35992533 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * * *
35992573 CCTTCGGGACTTAGCTCGGATATAATAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
35992613 CCTTCGAGACTTAGCCCGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
35992653 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
** * *
35992693 CCTTCGGGACTTAGCCTAG-AATTAGTCACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
35992732 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
35992755 CATCCGAAAA
Statistics
Matches: 193, Mismatches: 25, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 42 0.22
40 151 0.78
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:35995063 original size:13 final size:14
Alignment explanation
Indices: 35995037--35995065 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
35995027 ACTAGCGATG
35995037 AATTAAACCATTAT
1 AATTAAACCATTAT
35995051 AATTAAA-CATTAT
1 AATTAAACCATTAT
35995064 AA
1 AA
35995066 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:36000157 original size:9 final size:9
Alignment explanation
Indices: 36000143--36000282 Score: 76
Period size: 9 Copynumber: 15.6 Consensus size: 9
36000133 TATATATTAC
*
36000143 GTAAGTTAA
1 GTAAGTTAT
*
36000152 GTAAGTTTT
1 GTAAGTTAT
36000161 GTAAGTTAT
1 GTAAGTTAT
36000170 GTAAGTTAT
1 GTAAGTTAT
*
36000179 GAAAGTTAT
1 GTAAGTTAT
*
36000188 G-ATA-TGAT
1 GTA-AGTTAT
* *
36000196 ATACATTTAT
1 GTA-AGTTAT
*
36000206 GTAAGATAT
1 GTAAGTTAT
36000215 GTAAGTTAT
1 GTAAGTTAT
* *
36000224 GATATGATAT
1 G-TAAGTTAT
* *
36000234 G-CATTTAT
1 GTAAGTTAT
36000242 GTAAAG-TAT
1 GT-AAGTTAT
36000251 GTAAGTTAT
1 GTAAGTTAT
*
36000260 GATATATTTAT
1 G-TA-AGTTAT
36000271 GT-A-TTAT
1 GTAAGTTAT
36000278 GTAAG
1 GTAAG
36000283 GTATATAAAT
Statistics
Matches: 99, Mismatches: 21, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
7 6 0.06
8 13 0.13
9 58 0.59
10 16 0.16
11 6 0.06
ACGTcount: A:0.36, C:0.01, G:0.19, T:0.43
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:36000206 original size:36 final size:35
Alignment explanation
Indices: 36000166--36000264 Score: 153
Period size: 36 Copynumber: 2.7 Consensus size: 35
36000156 GTTTTGTAAG
*
36000166 TTATGTAAGTTATGAAAGTTATGATATGATATACAT
1 TTATGTAAG-TATGTAAGTTATGATATGATATACAT
*
36000202 TTATGTAAGATATGTAAGTTATGATATGATATGCAT
1 TTATGTAAG-TATGTAAGTTATGATATGATATACAT
36000238 TTATGTAAAGTATGTAAGTTATGATAT
1 TTATGT-AAGTATGTAAGTTATGATAT
36000265 ATTTATGTAT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 56 0.95
37 3 0.05
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.42
Consensus pattern (35 bp):
TTATGTAAGTATGTAAGTTATGATATGATATACAT
Found at i:36000278 original size:36 final size:36
Alignment explanation
Indices: 36000166--36000282 Score: 125
Period size: 36 Copynumber: 3.2 Consensus size: 36
36000156 GTTTTGTAAG
* * **
36000166 TTATGTAAGTTATGAAAGTTATGATATGA-TATACA
1 TTATGTAAGATATGTAAGTTATGATATGATTATGTA
*
36000201 TTTATGTAAGATATGTAAGTTATGATATGA-TATGCA
1 -TTATGTAAGATATGTAAGTTATGATATGATTATGTA
36000237 TTTATGTAA-AGTATGTAAGTTATGATAT-ATTTATGTA
1 -TTATGTAAGA-TATGTAAGTTATGATATGA-TTATGTA
36000274 TTATGTAAG
1 TTATGTAAG
36000283 GTATATAAAT
Statistics
Matches: 73, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
35 2 0.03
36 66 0.90
37 5 0.07
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.44
Consensus pattern (36 bp):
TTATGTAAGATATGTAAGTTATGATATGATTATGTA
Found at i:36002379 original size:12 final size:12
Alignment explanation
Indices: 36002362--36002386 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36002352 ACACCAAGCT
36002362 TCAAAGACATAA
1 TCAAAGACATAA
36002374 TCAAAGACATAA
1 TCAAAGACATAA
36002386 T
1 T
36002387 GAACACATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (12 bp):
TCAAAGACATAA
Found at i:36002620 original size:62 final size:62
Alignment explanation
Indices: 36002545--36002668 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 62
36002535 CACTATAGAC
36002545 CCCCTACGAATTGAGTTCGATCCCACTTTAAAGCAAAGCATAAAAAAGAAATCCTAAGTATT
1 CCCCTACGAATTGAGTTCGATCCCACTTTAAAGCAAAGCATAAAAAAGAAATCCTAAGTATT
* *
36002607 CCCCTACGAATTGAGTTCGATCCCACTTTAAAGTAAAGCATAAAAAAGAAATCCTATGTATT
1 CCCCTACGAATTGAGTTCGATCCCACTTTAAAGCAAAGCATAAAAAAGAAATCCTAAGTATT
36002669 GTTCAATCCT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.26
Consensus pattern (62 bp):
CCCCTACGAATTGAGTTCGATCCCACTTTAAAGCAAAGCATAAAAAAGAAATCCTAAGTATT
Found at i:36003477 original size:70 final size:70
Alignment explanation
Indices: 36003364--36003544 Score: 344
Period size: 70 Copynumber: 2.6 Consensus size: 70
36003354 CTTGGATCTG
*
36003364 ACAAAGTCTCATAAGCTTACAAAATAGTATAAAGTTAGTATAAATTTATACAAAGCTAAATCCTT
1 ACAAAGTCTCATAAGCTTACAAAATAGTATAAATTTAGTATAAATTTATACAAAGCTAAATCCTT
36003429 ATCAT
66 ATCAT
36003434 ACAAAGTCTCATAAGCTTACAAAATAGTATAAATTTAGTATAAATTTATACAAAGCTAAATCCTT
1 ACAAAGTCTCATAAGCTTACAAAATAGTATAAATTTAGTATAAATTTATACAAAGCTAAATCCTT
36003499 ATCAT
66 ATCAT
*
36003504 ACAAAGTCTCATAAGCTTAAAAAATAGTATAAATTTAGTAT
1 ACAAAGTCTCATAAGCTTACAAAATAGTATAAATTTAGTAT
36003545 TTAGGGTTGC
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
70 109 1.00
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.32
Consensus pattern (70 bp):
ACAAAGTCTCATAAGCTTACAAAATAGTATAAATTTAGTATAAATTTATACAAAGCTAAATCCTT
ATCAT
Found at i:36005363 original size:28 final size:29
Alignment explanation
Indices: 36005272--36005378 Score: 112
Period size: 29 Copynumber: 3.7 Consensus size: 29
36005262 TGCATGTGAT
* * *
36005272 TTGGGCTTAAGGGGCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATAAGAA
* * *
36005301 TTGGTCCTGATGGGCCGA-ATGAATGAGAA
1 TTGGGCCTAATGGGCC-ATATGAATAAGAA
*
36005330 TTGGGCCTAATGGGCCATATAAATAAG-A
1 TTGGGCCTAATGGGCCATATGAATAAGAA
36005358 TTGGGCC-AAGTGGGCCATATG
1 TTGGGCCTAA-TGGGCCATATG
36005379 CATGTATGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
27 2 0.03
28 19 0.30
29 42 0.66
30 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATAAGAA
Found at i:36006730 original size:27 final size:28
Alignment explanation
Indices: 36006652--36006764 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
36006642 AGCATGGCTG
* *
36006652 CCAGAACAGATAATA--TGACAGAGTCA
1 CCAGAACAGATAATATGTGGCAGAGCCA
* *
36006678 CCAGATATAGATAAT-CGTGGCAGAGCCA
1 CCAGA-ACAGATAATATGTGGCAGAGCCA
36006706 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAATATGTGGCAGAGCCA
* * * *
36006733 TCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAATATGTGGCAGAGCCA
36006761 CCAG
1 CCAG
36006765 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 8 0.11
27 32 0.44
28 32 0.44
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (28 bp):
CCAGAACAGATAATATGTGGCAGAGCCA
Found at i:36006760 original size:55 final size:54
Alignment explanation
Indices: 36006652--36006764 Score: 131
Period size: 55 Copynumber: 2.1 Consensus size: 54
36006642 AGCATGGCTG
* *
36006652 CCAGAACAGATAATATGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
36006706 CCAGAACAGA-AATATGTGGCAGAGCCATCAGAT-CAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAATA--TGACAGAGCCACCAGATACAGATAA-TCGTGGCAGAGCCA
36006761 CCAG
1 CCAG
36006765 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
53 4 0.08
54 16 0.32
55 30 0.60
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:36014434 original size:27 final size:26
Alignment explanation
Indices: 36014398--36014490 Score: 114
Period size: 27 Copynumber: 3.5 Consensus size: 26
36014388 CAGCATGGCT
* *
36014398 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
36014424 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
* *
36014452 ACCAGAACAGAAATATGTGGTAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
*
36014479 ACCAGATCAGAT
1 ACCAGAACAGAT
36014491 TATTTGTGGC
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
26 6 0.10
27 35 0.60
28 17 0.29
ACGTcount: A:0.40, C:0.22, G:0.24, T:0.15
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:36015913 original size:24 final size:24
Alignment explanation
Indices: 36015886--36015932 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
36015876 CTAGATTTCC
**
36015886 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
36015910 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
36015933 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:36017595 original size:17 final size:17
Alignment explanation
Indices: 36017570--36017609 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
36017560 CTAATCTCCA
* *
36017570 TTTTATATTTCTTTTTT
1 TTTTGTATTTCATTTTT
36017587 TTTTGTATTTCATTTTT
1 TTTTGTATTTCATTTTT
*
36017604 ATTTGT
1 TTTTGT
36017610 TATCAATGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.78
Consensus pattern (17 bp):
TTTTGTATTTCATTTTT
Found at i:36017621 original size:19 final size:20
Alignment explanation
Indices: 36017599--36017640 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
36017589 TTGTATTTCA
36017599 TTTTTATTT-GTTATCAATG
1 TTTTTATTTAGTTATCAATG
*
36017618 TTTTTATTTATTTATCAATG
1 TTTTTATTTAGTTATCAATG
36017638 TTT
1 TTT
36017641 ATTTTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.21, C:0.05, G:0.07, T:0.67
Consensus pattern (20 bp):
TTTTTATTTAGTTATCAATG
Found at i:36017934 original size:7 final size:7
Alignment explanation
Indices: 36017922--36017964 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
36017912 ACTAATTAAT
36017922 CTAAACC
1 CTAAACC
36017929 CTAAACTC
1 CTAAAC-C
*
36017937 CTAATCC
1 CTAAACC
*
36017944 CTAATCC
1 CTAAACC
*
36017951 CTAATCC
1 CTAAACC
36017958 CTAAACC
1 CTAAACC
36017965 TTGAATCCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
7 27 0.82
8 6 0.18
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:36017955 original size:14 final size:15
Alignment explanation
Indices: 36017922--36017963 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
36017912 ACTAATTAAT
*
36017922 CTAAACCCTAAACTC
1 CTAATCCCTAAACTC
*
36017937 CTAATCCCTAATC-C
1 CTAATCCCTAAACTC
36017951 CTAATCCCTAAAC
1 CTAATCCCTAAAC
36017964 CTTGAATCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (15 bp):
CTAATCCCTAAACTC
Found at i:36018017 original size:7 final size:7
Alignment explanation
Indices: 36017987--36018030 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
36017977 ACGTAAACCT
36017987 TGACCCC
1 TGACCCC
36017994 TGAACCCC
1 TG-ACCCC
*
36018002 TAACCCC
1 TGACCCC
36018009 TGACCCC
1 TGACCCC
*
36018016 TGACCAC
1 TGACCCC
*
36018023 TGATCCC
1 TGACCCC
36018030 T
1 T
36018031 AAACTTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
7 25 0.81
8 6 0.19
ACGTcount: A:0.20, C:0.50, G:0.11, T:0.18
Consensus pattern (7 bp):
TGACCCC
Found at i:36018074 original size:15 final size:15
Alignment explanation
Indices: 36018047--36018084 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
36018037 TAAACCCCAA
36018047 CCTTAAA-CCATAAT
1 CCTTAAACCCATAAT
36018061 CCTTAAACCCATAAT
1 CCTTAAACCCATAAT
*
36018076 CCATAAACC
1 CCTTAAACC
36018085 TTAAAATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.42, C:0.34, G:0.00, T:0.24
Consensus pattern (15 bp):
CCTTAAACCCATAAT
Found at i:36018119 original size:22 final size:22
Alignment explanation
Indices: 36018055--36018134 Score: 67
Period size: 22 Copynumber: 3.7 Consensus size: 22
36018045 AACCTTAAAC
*
36018055 CATAATCCTTAAACCCATAA-T
1 CATAAACCTTAAACCCATAACT
**
36018076 CCATAAACCTTAAA-ATAGTAACT
1 -CATAAACCTTAAACCCA-TAACT
*
36018099 CATAAACCTTAAACCCCTAAC-
1 CATAAACCTTAAACCCATAACT
* *
36018120 CATATACCCTAAACC
1 CATAAACCTTAAACC
36018135 GTAAACCGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
21 14 0.30
22 32 0.68
23 1 0.02
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.24
Consensus pattern (22 bp):
CATAAACCTTAAACCCATAACT
Found at i:36018132 original size:21 final size:22
Alignment explanation
Indices: 36018094--36018134 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
36018084 CTTAAAATAG
*
36018094 TAACTCATAAACCTTAAACCCC
1 TAACTCATAAACCCTAAACCCC
*
36018116 TAAC-CATATACCCTAAACC
1 TAACTCATAAACCCTAAACC
36018135 GTAAACCGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (22 bp):
TAACTCATAAACCCTAAACCCC
Found at i:36018258 original size:7 final size:7
Alignment explanation
Indices: 36018246--36018392 Score: 98
Period size: 7 Copynumber: 20.7 Consensus size: 7
36018236 ACTAATTAAT
36018246 CTAAACC
1 CTAAACC
36018253 CTAAACCC
1 CTAAA-CC
*
36018261 CTAATCC
1 CTAAACC
36018268 CTAAACC
1 CTAAACC
* *
36018275 TTAAATC
1 CTAAACC
*
36018282 CTAAAAC
1 CTAAACC
*
36018289 ATAAACC
1 CTAAACC
36018296 CTAAACCC
1 CTAAA-CC
*
36018304 CTAACCC
1 CTAAACC
*
36018311 CTAACCC
1 CTAAACC
*
36018318 CTAACCC
1 CTAAACC
*
36018325 CTAACCC
1 CTAAACC
* *
36018332 CTGACCC
1 CTAAACC
* *
36018339 CTGATCC
1 CTAAACC
36018346 CTAAACC
1 CTAAACC
*
36018353 TTAAACC
1 CTAAACC
36018360 CT-AACC
1 CTAAACC
36018366 CTTAAACC
1 C-TAAACC
* *
36018374 ATAATCC
1 CTAAACC
*
36018381 ATAAACC
1 CTAAACC
*
36018388 TTAAA
1 CTAAA
36018393 ATAGTAACTC
Statistics
Matches: 116, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
6 5 0.04
7 95 0.82
8 16 0.14
ACGTcount: A:0.38, C:0.41, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:36018328 original size:43 final size:43
Alignment explanation
Indices: 36018247--36018328 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
36018237 CTAATTAATC
* * *
36018247 TAAACCCTAAACCCCTAATCCCTAAACCTTAAATCCTAAAACA
1 TAAACCCTAAACCCCTAACCCCTAAACCCTAAACCCTAAAACA
* *
36018290 TAAACCCTAAACCCCTAACCCCTAACCCCTAACCCCTAA
1 TAAACCCTAAACCCCTAACCCCTAAACCCTAAACCCTAA
36018329 CCCCTGACCC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.40, C:0.41, G:0.00, T:0.18
Consensus pattern (43 bp):
TAAACCCTAAACCCCTAACCCCTAAACCCTAAACCCTAAAACA
Found at i:36018371 original size:21 final size:21
Alignment explanation
Indices: 36018347--36018450 Score: 68
Period size: 21 Copynumber: 4.9 Consensus size: 21
36018337 CCCTGATCCC
* * *
36018347 TAAACCTTAAACCCTAACCCT
1 TAAACCATAAACCATAAACCT
*
36018368 TAAACCATAATCCATAAACCT
1 TAAACCATAAACCATAAACCT
36018389 TAAA--ATAGTAACTCATAAACCT
1 TAAACCATA--AAC-CATAAACCT
* * * * *
36018411 TAAACCCTTAACTATATACCC
1 TAAACCATAAACCATAAACCT
* *
36018432 TAAACCGTAAACCGTAAAC
1 TAAACCATAAACCATAAAC
36018451 TATAATGATA
Statistics
Matches: 63, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
19 3 0.05
21 43 0.68
22 16 0.25
24 1 0.02
ACGTcount: A:0.44, C:0.29, G:0.03, T:0.24
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCT
Found at i:36018503 original size:303 final size:313
Alignment explanation
Indices: 36017863--36018537 Score: 1016
Period size: 303 Copynumber: 2.2 Consensus size: 313
36017853 GTTTATCTAT
36017863 TATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATT--AAAAAACTAATTAATCTAA
1 TATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAAAAAACTAATTAATCTAA
* * * * * * * *
36017926 ACCCTAAACTCCTAATCCCTAATCCCTAATCCCTAAACCTTGAATCCTAAAACGTAAACCTTGAC
66 ACCCTAAACCCCTAATCCCTAAACCCTAATCCCTAAAACATAAACCCTAAAAC----ACCCTAAC
* *
36017991 CCCTGAACCCCTAACCCCTGACCCCTGACCACTGATCCCTAAACTTTAAACCCCAACCTTAAACC
127 CCCTGAACCCCTAACCCCTAACCCCTGACCACTGATCCCTAAACCTTAAA--CC-ACCTTAAACC
36018056 ATAATCCTTAAACCCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTAAACCCCTAACC
189 ---A-CCTTAAACCCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTAAACCCCTAACC
36018121 ATATACCCTAAACCGTAAACCGTAAACTATAATGATAATTAATTCAATATTTTAAAATTAATAC
250 ATATACCCTAAACCGTAAACCGTAAACTATAATGATAATTAATTCAATATTTTAAAATTAATAC
36018185 TATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAAAAAACTAATTAATCTAA
1 TATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAAAAAACTAATTAATCTAA
*
36018250 ACCCTAAACCCCTAATCCCTAAACCTTAAAT-CCTAAAACATAAACCCT-AAAC-CCCTAACCCC
66 ACCCTAAACCCCTAATCCCTAAACCCT-AATCCCTAAAACATAAACCCTAAAACACCCTAACCCC
*
36018312 T-AACCCCTAACCCCTAACCCCTGACCCCTGATCCCTAAACCTTAAA-C-CC-T-AA-C-CCTTA
130 TGAACCCCTAACCCCTAACCCCTGACCACTGATCCCTAAACCTTAAACCACCTTAAACCACCTTA
* *
36018370 AA-CCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTAAACCCTTAACTATATACCCTA
195 AACCCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTAAACCCCTAACCATATACCCTA
36018434 AACCGTAAACCGTAAACTATAATGATAATTAATTCAATATTTTAAAATTAATAC
260 AACCGTAAACCGTAAACTATAATGATAATTAATTCAATATTTTAAAATTAATAC
*
36018488 TATCTCTTTTACAATTATATAAGAAAATATTTAACATATAAATTAAAAAA
1 TATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAAAA
36018538 CAATCAGTCA
Statistics
Matches: 335, Mismatches: 15, Indels: 25
0.89 0.04 0.07
Matches are distributed among these distances:
303 163 0.49
304 7 0.02
309 1 0.00
310 2 0.01
311 1 0.00
312 2 0.01
314 1 0.00
317 42 0.13
318 9 0.03
322 44 0.13
323 4 0.01
324 56 0.17
325 3 0.01
ACGTcount: A:0.43, C:0.26, G:0.03, T:0.28
Consensus pattern (313 bp):
TATCTCTTTTACAATTATATAAGAAAATATTTATCATATAAATTAAAAAAAACTAATTAATCTAA
ACCCTAAACCCCTAATCCCTAAACCCTAATCCCTAAAACATAAACCCTAAAACACCCTAACCCCT
GAACCCCTAACCCCTAACCCCTGACCACTGATCCCTAAACCTTAAACCACCTTAAACCACCTTAA
ACCCATAATCCATAAACCTTAAAATAGTAACTCATAAACCTTAAACCCCTAACCATATACCCTAA
ACCGTAAACCGTAAACTATAATGATAATTAATTCAATATTTTAAAATTAATAC
Found at i:36021390 original size:207 final size:207
Alignment explanation
Indices: 36021148--36021558 Score: 750
Period size: 207 Copynumber: 2.0 Consensus size: 207
36021138 TAAACTTGGC
36021148 ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
1 ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
*
36021213 CAGTATTATTGCTGTATTATTATCATACCAACTTACATACTTTCAACACCTCGGAAATCATAATG
66 CAGCATTATTGCTGTATTATTATCATACCAACTTACATACTTTCAACACCTCGGAAATCATAATG
* *
36021278 AATATATCAATTTTACATTAAAACATGCATAAATTAATGCTTAGTATACATATGAACTTACTTCG
131 AATATATCAATTTTACATTAAAACATGCATAAATTAATGCTTAGTATACATATGAACTTACCTCA
36021343 ATACTAAAAAAA
196 ATACTAAAAAAA
36021355 ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
1 ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
* *
36021420 CAGCATTATTGCTGTATTATTATCATACTAACTTACTTACTTTCAACACCTCGGAAATCATAATG
66 CAGCATTATTGCTGTATTATTATCATACCAACTTACATACTTTCAACACCTCGGAAATCATAATG
* * *
36021485 AATATATCAATTTTACATTGAAACATGCATAAATTAATGCTTATTATACATGTGAACTTACCTCA
131 AATATATCAATTTTACATTAAAACATGCATAAATTAATGCTTAGTATACATATGAACTTACCTCA
36021550 ATACTAAAA
196 ATACTAAAA
36021559 GGTCATTTTA
Statistics
Matches: 196, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
207 196 1.00
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (207 bp):
ACCATAATCATTTAATTTAATATAATTCAATTAATTCACTAAATTTAACTTTCAAATATAAATTA
CAGCATTATTGCTGTATTATTATCATACCAACTTACATACTTTCAACACCTCGGAAATCATAATG
AATATATCAATTTTACATTAAAACATGCATAAATTAATGCTTAGTATACATATGAACTTACCTCA
ATACTAAAAAAA
Found at i:36023021 original size:41 final size:40
Alignment explanation
Indices: 36022916--36023023 Score: 171
Period size: 40 Copynumber: 2.7 Consensus size: 40
36022906 CAAGCATTAA
*
36022916 CGGCGTTTTTTAAAAAGCACCGCTAATACTCGATCTATAG
1 CGGCGTTTTTTAAAAAGCGCCGCTAATACTCGATCTATAG
*
36022956 CGGCGTTTTTTAAAAAGCGTCGCTAATACTCGATCTATAG
1 CGGCGTTTTTTAAAAAGCGCCGCTAATACTCGATCTATAG
* *
36022996 CGGCGTTTTTTCAGAAAGTGCCGCTAAT
1 CGGCGTTTTTT-AAAAAGCGCCGCTAAT
36023024 GCCACTGAAG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
40 49 0.79
41 13 0.21
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (40 bp):
CGGCGTTTTTTAAAAAGCGCCGCTAATACTCGATCTATAG
Found at i:36024156 original size:17 final size:17
Alignment explanation
Indices: 36024134--36024215 Score: 75
Period size: 17 Copynumber: 5.1 Consensus size: 17
36024124 ATTTTTTGTC
36024134 TATATATATTATGTTTA
1 TATATATATTATGTTTA
*
36024151 TATATATGTTATGTTTA
1 TATATATATTATGTTTA
36024168 TAT-T-TA-TA--TTTA
1 TATATATATTATGTTTA
* * *
36024180 TATACATATTCTATTTA
1 TATATATATTATGTTTA
* *
36024197 TATATGTTTTATGTTTA
1 TATATATATTATGTTTA
36024214 TA
1 TA
36024216 AAAAATACTT
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
12 7 0.14
14 4 0.08
15 2 0.04
16 1 0.02
17 37 0.73
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (17 bp):
TATATATATTATGTTTA
Found at i:36027703 original size:30 final size:30
Alignment explanation
Indices: 36027667--36027748 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
36027657 TCCATACAGA
36027667 TAGATAGCCACAAAGGCGTCCACATAACAT
1 TAGATAGCCACAAAGGCGTCCACATAACAT
* * *
36027697 TAGATAGCCATAAAGGCGTCTAGATAACAT
1 TAGATAGCCACAAAGGCGTCCACATAACAT
* * *
36027727 CAGAAAGCCACAAAGGCATCCA
1 TAGATAGCCACAAAGGCGTCCA
36027749 AACACATATA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.16
Consensus pattern (30 bp):
TAGATAGCCACAAAGGCGTCCACATAACAT
Found at i:36045930 original size:36 final size:36
Alignment explanation
Indices: 36045883--36045955 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
36045873 TTAACAATGC
**
36045883 TCTATGAGTTAATACTACGGGGGATTTAGTATAAGG
1 TCTATGAGTTAATACTACAAGGGATTTAGTATAAGG
36045919 TCTATGAGTTAATACTACAAGGGATTTAGTATAAGG
1 TCTATGAGTTAATACTACAAGGGATTTAGTATAAGG
36045955 T
1 T
36045956 TCACAGGAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.34
Consensus pattern (36 bp):
TCTATGAGTTAATACTACAAGGGATTTAGTATAAGG
Found at i:36058581 original size:37 final size:37
Alignment explanation
Indices: 36058522--36058630 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
36058512 AGCTCAGACG
* *
36058522 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
36058559 AAATCTCCACACGTAGCCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
36058596 TAATCTCCACACGTAGTCATCGGGTCTTAACCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
36058631 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:36058900 original size:48 final size:49
Alignment explanation
Indices: 36058776--36058912 Score: 197
Period size: 50 Copynumber: 2.8 Consensus size: 49
36058766 GCACATCGCC
* * *
36058776 TACATATTTCACACTAGCAATTTGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* *
36058826 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
36058874 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
36058913 TGCATGTTCA
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
48 36 0.46
49 2 0.03
50 40 0.51
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:36058914 original size:50 final size:50
Alignment explanation
Indices: 36058776--36059011 Score: 201
Period size: 47 Copynumber: 4.9 Consensus size: 50
36058766 GCACATCGCC
* * *
36058776 TACATATTTCACACTAGCAATTTGGCTTTACCACATATA--CATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTC--A
*
36058826 TATATATTTCACATT-GACCATTCGGCTTTACCAC--ATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATATGCATATCTCA
*
36058874 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATGT-TCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
** * * * *
36058923 T--AT-TCACCACATTGGCCATTCGGCCTTATCACACATATGCAT-TCTC-
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
* * * *
36058969 -ACAT-TCATCACATTGGCCATTCGGCCTTATCACATATATGCAT
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATATGCAT
36059012 GTTCACATTC
Statistics
Matches: 162, Mismatches: 14, Indels: 23
0.81 0.07 0.12
Matches are distributed among these distances:
46 2 0.01
47 74 0.46
48 35 0.22
49 6 0.04
50 45 0.28
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (50 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
Found at i:36058954 original size:25 final size:25
Alignment explanation
Indices: 36058926--36059001 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 25
36058916 ATGTTCATAT
36058926 TCACCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
* *
36058951 TCA-CACATAT-G-CATTC-TCACAT-
1 TCACCACAT-TGGCCATTCGGC-CTTA
*
36058973 TCATCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
36058998 TCAC
1 TCAC
36059002 ATATATGCAT
Statistics
Matches: 39, Mismatches: 5, Indels: 14
0.67 0.09 0.24
Matches are distributed among these distances:
22 5 0.13
23 13 0.33
24 13 0.33
25 8 0.21
ACGTcount: A:0.24, C:0.34, G:0.12, T:0.30
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGGCCTTA
Found at i:36058961 original size:47 final size:47
Alignment explanation
Indices: 36058882--36059075 Score: 282
Period size: 47 Copynumber: 4.1 Consensus size: 47
36058872 CATACATATT
* * * *
36058882 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
36058929 CCACATTGGCCATTCGGCCTTATCACACATATGCAT-TCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TCACATTCA
36058976 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
36059023 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
36059070 TCACAT
1 TCACAT
36059076 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
46 1 0.01
47 131 0.98
48 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:36058966 original size:23 final size:23
Alignment explanation
Indices: 36058939--36059011 Score: 62
Period size: 23 Copynumber: 3.1 Consensus size: 23
36058929 CCACATTGGC
36058939 CATTCGGCCTTATCACACATATG
1 CATTCGGCCTTATCACACATATG
* *
36058962 CATTC-TCACAT-TCATCACAT-TGG
1 CATTCGGC-CTTATCA-CACATAT-G
*
36058985 CCATTCGGCCTTATCACATATATG
1 -CATTCGGCCTTATCACACATATG
36059009 CAT
1 CAT
36059012 GTTCACATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
22 5 0.13
23 16 0.42
24 12 0.32
25 5 0.13
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (23 bp):
CATTCGGCCTTATCACACATATG
Found at i:36058992 original size:94 final size:93
Alignment explanation
Indices: 36058835--36059075 Score: 299
Period size: 94 Copynumber: 2.5 Consensus size: 93
36058825 ATATATATTT
* * *
36058835 CACATTGACCATTCGGCTTTA-CCACATATGCATATCTCATACATAT-TTCACATTAGCCATTCG
1 CACATTGGCCATTCGGCCTTATCCACATATGCAT-TCTC--ACAT-TCATCACATTAGCCATTCG
* *
36058898 GCTTTACCACATATATGCATGTTCATATTCAC
62 GCCTTACCACATATATGCATGTTCACATTCAC
*
36058930 CACATTGGCCATTCGGCCTTATCACACATATGCATTCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATC-CACATATGCATTCTCACATTCATCACATTAGCCATTCGGCC
* *
36058995 TTATCACATATATGCATGTTCACATTCAT
65 TTACCACATATATGCATGTTCACATTCAC
* * *
36059024 CACATTGGCCATTCGGCCTTATCTCATATATACACAT-TCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATC-CACATATGCA-TTCTCACATTCATCACAT
36059076 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
93 1 0.01
94 93 0.72
95 20 0.15
96 5 0.04
97 11 0.08
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (93 bp):
CACATTGGCCATTCGGCCTTATCCACATATGCATTCTCACATTCATCACATTAGCCATTCGGCCT
TACCACATATATGCATGTTCACATTCAC
Found at i:36064423 original size:44 final size:43
Alignment explanation
Indices: 36064325--36064446 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 43
36064315 CATAGGATTC
* *
36064325 CGATATGTGATTTCATGTAAGACCATGTTTGGGACATTGGCAT
1 CGATATGTGATTTCATGTAAGACCATGTCTGGGACAGTGGCAT
* * * * * *
36064368 TGATTTATGATTTGCGTGTGAA-ACCCTGTCTGGGATAGTGGCAT
1 CGATATGTGATTT-CATGT-AAGACCATGTCTGGGACAGTGGCAT
* *
36064412 CGATATGTGATTACATGTAAGACCACGTCTGGGAC
1 CGATATGTGATTTCATGTAAGACCATGTCTGGGAC
36064447 GTTGGCGTTG
Statistics
Matches: 60, Mismatches: 16, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
42 2 0.03
43 25 0.42
44 31 0.52
45 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
CGATATGTGATTTCATGTAAGACCATGTCTGGGACAGTGGCAT
Found at i:36066807 original size:27 final size:27
Alignment explanation
Indices: 36066765--36066911 Score: 145
Period size: 27 Copynumber: 5.4 Consensus size: 27
36066755 ACCCTTAATC
*
36066765 GGGTAAAATAACCGAAATATCCCCATA
1 GGGTAAAATGACCGAAATATCCCCATA
* *
36066792 TGGTAAAATGATCGAAATA-CCGCCATA
1 GGGTAAAATGACCGAAATATCC-CCATA
* * * *
36066819 GGGTCAAATCACCCAAATATCCCTATA
1 GGGTAAAATGACCGAAATATCCCCATA
* *
36066846 GGGTAAAATGACTGAAATACCCCCATA
1 GGGTAAAATGACCGAAATATCCCCATA
* * * *
36066873 GAGTAAAATGACTGTAAT-TCCCCTGTA
1 GGGTAAAATGACCGAAATATCCCC-ATA
36066900 GGGTAAAATGAC
1 GGGTAAAATGAC
36066912 TATTTTGCCC
Statistics
Matches: 97, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
26 6 0.06
27 89 0.92
28 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATATCCCCATA
Found at i:36066934 original size:27 final size:27
Alignment explanation
Indices: 36066904--36066977 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
36066894 CCTGTAGGGT
*
36066904 AAAATGACTATTTTGCCCTTGTGAGGC
1 AAAATGACTGTTTTGCCCTTGTGAGGC
* *
36066931 AAAATGATTGTTTTTCCCTTGTGAGGC
1 AAAATGACTGTTTTGCCCTTGTGAGGC
36066958 AAAATGACTGTTTTGCCCTT
1 AAAATGACTGTTTTGCCCTT
36066978 ATATGGTAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (27 bp):
AAAATGACTGTTTTGCCCTTGTGAGGC
Found at i:36067482 original size:34 final size:35
Alignment explanation
Indices: 36067417--36067501 Score: 120
Period size: 34 Copynumber: 2.5 Consensus size: 35
36067407 TGTATTGAGG
36067417 TGGGCTTAGGCCCAGACTGTTTACTGATACTAAAA
1 TGGGCTTAGGCCCAGACTGTTTACTGATACTAAAA
* *
36067452 TGGGCTAAGGCCCAGACTG-TTACT-ATTACTAATA
1 TGGGCTTAGGCCCAGACTGTTTACTGA-TACTAAAA
*
36067486 TAGGCTTAGGCCCAGA
1 TGGGCTTAGGCCCAGA
36067502 ATGTATTCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
33 1 0.02
34 26 0.58
35 18 0.40
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (35 bp):
TGGGCTTAGGCCCAGACTGTTTACTGATACTAAAA
Found at i:36084905 original size:16 final size:16
Alignment explanation
Indices: 36084884--36084915 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36084874 TATTATTTGG
36084884 TATGTATGTAAATATA
1 TATGTATGTAAATATA
*
36084900 TATGTATGTGAATATA
1 TATGTATGTAAATATA
36084916 CTTGTGTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.44
Consensus pattern (16 bp):
TATGTATGTAAATATA
Found at i:36096954 original size:46 final size:46
Alignment explanation
Indices: 36096902--36097030 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
36096892 TGTAACCCGC
* *
36096902 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
** *
36096948 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
* *
36096994 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGA
36097031 TGCCCAAACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
Found at i:36099428 original size:30 final size:30
Alignment explanation
Indices: 36099394--36099473 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
36099384 AAAGATAACC
*
36099394 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* *
36099424 GAATAAAGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
* *
36099454 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
36099474 CGATACTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 2 0.05
30 39 0.91
31 2 0.05
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:36099433 original size:15 final size:15
Alignment explanation
Indices: 36099394--36099464 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
36099384 AAAGATAACC
36099394 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
36099409 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
36099424 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
36099439 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
36099454 GGATAAAGAAA
1 GAATAAAGAAA
36099465 CCCAAGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:36099473 original size:15 final size:15
Alignment explanation
Indices: 36099396--36099473 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
36099386 AGATAACCGA
36099396 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
36099411 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
36099425 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
36099440 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
36099456 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
36099471 ATA
1 ATA
36099474 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:36102446 original size:46 final size:46
Alignment explanation
Indices: 36102379--36102507 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
36102369 TGTAACCCGC
* * *
36102379 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
36102425 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
36102471 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36102508 TGCCCAAACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36102526 original size:46 final size:46
Alignment explanation
Indices: 36102384--36102526 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 46
36102374 CCCGCCCATA
* ****
36102384 AGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAAACATCC-T
* ** *
36102429 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCGCAAACATCCT
*
36102476 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAAACATCCT
36102522 AGTGA
1 AGTGA
36102527 CATGTCACTT
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
44 8 0.10
46 66 0.84
50 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCGCAAACATCCT
Found at i:36108600 original size:17 final size:17
Alignment explanation
Indices: 36108578--36108610 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
36108568 ATTAGTTTAA
36108578 TTAAATTATTTTCTCAT
1 TTAAATTATTTTCTCAT
36108595 TTAAATTATTTTCTCA
1 TTAAATTATTTTCTCA
36108611 ACCCAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (17 bp):
TTAAATTATTTTCTCAT
Found at i:36113762 original size:29 final size:29
Alignment explanation
Indices: 36113729--36113819 Score: 130
Period size: 29 Copynumber: 3.2 Consensus size: 29
36113719 TAGGCCTAAC
36113729 GGGCCATATAAATGTGATTTGGGCTTAAT
1 GGGCCATATAAATGTGATTTGGGCTTAAT
* * *
36113758 GGGCCATATACAGGTGATTTGGGCCTAAT
1 GGGCCATATAAATGTGATTTGGGCTTAAT
* *
36113787 GGGCCATATGAATATGA-TTGGGCTTAAT
1 GGGCCATATAAATGTGATTTGGGCTTAAT
36113815 GGGCC
1 GGGCC
36113820 TAATACAGGT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
28 15 0.28
29 39 0.72
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.30
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGGGCTTAAT
Found at i:36113826 original size:57 final size:58
Alignment explanation
Indices: 36113721--36113829 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 58
36113711 AATTTGACTA
*
36113721 GGCCTAACGGGCCATATAAATGTGATTTGGGCTTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAATATGATTTGGGCTTAATGGGCCATATACAGGTGATTTG
* *
36113779 GGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCC-TAATACAGGT
1 GGCCTAACGGGCCATATAAATATGATTTGGGCTTAATGGGCCAT-ATACAGGT
36113830 ATGTGATTTC
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
56 1 0.02
57 24 0.51
58 22 0.47
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (58 bp):
GGCCTAACGGGCCATATAAATATGATTTGGGCTTAATGGGCCATATACAGGTGATTTG
Found at i:36118039 original size:16 final size:16
Alignment explanation
Indices: 36118013--36118058 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
36118003 TATGGATTAA
*
36118013 CAAAA-GCCGAAATGC
1 CAAAATGCCGAAAAGC
36118028 CAAAATGCCGAAAAGC
1 CAAAATGCCGAAAAGC
*
36118044 CGAAATGCCGAAAAG
1 CAAAATGCCGAAAAG
36118059 TTGAAAGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
15 5 0.18
16 23 0.82
ACGTcount: A:0.48, C:0.24, G:0.22, T:0.07
Consensus pattern (16 bp):
CAAAATGCCGAAAAGC
Found at i:36118329 original size:29 final size:29
Alignment explanation
Indices: 36118287--36118388 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
36118277 TGAATGTAAC
*
36118287 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* * *
36118316 TGGGCTTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
36118345 TGGGCCTAATGGGCCATATGAATGTGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
36118373 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
36118389 AATACAGGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 16 0.25
29 48 0.75
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:36118359 original size:58 final size:57
Alignment explanation
Indices: 36118287--36118397 Score: 186
Period size: 57 Copynumber: 1.9 Consensus size: 57
36118277 TGAATGTAAC
*
36118287 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCTTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATGTGA-TTGGGCTTAATGGGCCAAATACAGGTGATT
* *
36118345 TGGGCCTAATGGGCCATATGAATGTGATTGGGCTTAATGGGCCAAATACAGGT
1 TGGGCCTAACGGGCCATATAAATGTGATTGGGCTTAATGGGCCAAATACAGGT
36118398 ATGTGAATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
57 25 0.50
58 25 0.50
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATGTGATTGGGCTTAATGGGCCAAATACAGGTGATT
Found at i:36118384 original size:28 final size:29
Alignment explanation
Indices: 36118274--36118388 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
36118264 GTGAGGATGA
** *
36118274 ATATGAATGT-AACTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
36118302 ATATAAATGTGATTTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
36118331 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
*
36118360 ATATGAATGTGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
36118388 A
1 A
36118389 AATACAGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 26 0.35
29 48 0.64
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:36124023 original size:18 final size:19
Alignment explanation
Indices: 36124000--36124035 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36123990 AACTTGGCAC
*
36124000 CATAA-TCATTTAATTTAA
1 CATAATTCAATTAATTTAA
36124018 CATAATTCAATTAATTTA
1 CATAATTCAATTAATTTA
36124036 CTAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (19 bp):
CATAATTCAATTAATTTAA
Found at i:36130209 original size:47 final size:47
Alignment explanation
Indices: 36130049--36130264 Score: 208
Period size: 47 Copynumber: 4.6 Consensus size: 47
36130039 TGTAAGCCAC
* *
36130049 TGTAAGA-CATGTCTGGGACAT-GCATC-AC-T-ACATGATGTGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTAACGTGA-GAGTCAG
* * ** * *
36130092 TATAAGACCATGTCTAGGACATGGCATCGGCACAGATATGTGGGAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-G-ACTTA-ACGTGAGAGTCAG
* *
36130142 TGTAAGACCATGTTTAGGACATGGCATCGACTTAACGTGAGAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTAACGTGAGAGTCAG
* * * * * * *
36130189 TGTAAGACCATGTTTGGGACACGGCGTTGACTTAGCGTGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTAACGTGAGAGTCAG
36130236 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
36130265 GCATTATACC
Statistics
Matches: 141, Mismatches: 24, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
43 6 0.04
44 13 0.09
45 5 0.04
47 76 0.54
48 5 0.04
49 1 0.01
50 32 0.23
51 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTTAACGTGAGAGTCAG
Done.