Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 115 of 253
Found at i:36132298 original size:79 final size:79
Alignment explanation
Indices: 36132158--36132379 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 79
36132148 TATTCGAATG
* * * **
36132158 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGC
36132223 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
36132239 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGC
36132302 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
36132318 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
36132380 TATGTGATTC
Statistics
Matches: 122, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 64 0.52
80 45 0.37
81 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:36132360 original size:40 final size:40
Alignment explanation
Indices: 36132158--36132365 Score: 262
Period size: 40 Copynumber: 5.2 Consensus size: 40
36132148 TATTCGAATG
* * *
36132158 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
36132199 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
36132239 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
36132278 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
36132318 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
36132358 ATATCCGG
1 ATATCCGG
36132366 TTAAATTCCG
Statistics
Matches: 147, Mismatches: 14, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
39 37 0.25
40 81 0.55
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36140547 original size:40 final size:40
Alignment explanation
Indices: 36140352--36140540 Score: 181
Period size: 39 Copynumber: 4.8 Consensus size: 40
36140342 AATGATATCT
* * * * *
36140352 GGGCTAGGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* * * *
36140393 AGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
*
36140433 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
* *
36140472 AGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
* *
36140511 GGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
36140541 AGCTATATCC
Statistics
Matches: 122, Mismatches: 19, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
39 65 0.53
40 37 0.30
41 19 0.16
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:36148051 original size:47 final size:47
Alignment explanation
Indices: 36148000--36148193 Score: 325
Period size: 47 Copynumber: 4.1 Consensus size: 47
36147990 CACTTCCACG
**
36148000 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
36148047 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
36148094 TTCATCACATTGACCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
36148141 TTCGTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
36148188 TTCATC
1 TTCATC
36148194 TCATAGAATC
Statistics
Matches: 138, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 138 1.00
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:36152033 original size:19 final size:20
Alignment explanation
Indices: 36152000--36152037 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36151990 ATTTGCCTAA
36152000 ATTTTTTTACATTTTCTTTG
1 ATTTTTTTACATTTTCTTTG
*
36152020 ATTTTTTTTC-TTTTCTTT
1 ATTTTTTTACATTTTCTTT
36152038 TATATGCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.76
Consensus pattern (20 bp):
ATTTTTTTACATTTTCTTTG
Found at i:36153741 original size:40 final size:40
Alignment explanation
Indices: 36153664--36153884 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
36153654 ACCCAAGTAT
* *
36153664 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
36153703 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
36153743 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
36153783 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
** * *
36153823 CTTCGAATCTTAGTCCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
36153863 CTTCCGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
36153885 CATTCAAATA
Statistics
Matches: 158, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 143 0.91
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:36157129 original size:14 final size:14
Alignment explanation
Indices: 36157110--36157137 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36157100 TTGTCACATG
36157110 AATTAAATTAATTA
1 AATTAAATTAATTA
36157124 AATTAAATTAATTA
1 AATTAAATTAATTA
36157138 TTGAAAGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTAAATTAATTA
Found at i:36159801 original size:16 final size:16
Alignment explanation
Indices: 36159777--36159828 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
36159767 GTAGATCGGT
* *
36159777 AAATCCCGAAATGCCA
1 AAATGCCGAAAAGCCA
**
36159793 AAATGCCGAAAAGCTG
1 AAATGCCGAAAAGCCA
*
36159809 AAATGTCGAAAAGCCA
1 AAATGCCGAAAAGCCA
36159825 AAAT
1 AAAT
36159829 TTTGGCTACG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.48, C:0.21, G:0.17, T:0.13
Consensus pattern (16 bp):
AAATGCCGAAAAGCCA
Found at i:36161102 original size:22 final size:21
Alignment explanation
Indices: 36161068--36161108 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
36161058 GTCTTTATGT
*
36161068 AATTTTTAATATTTTGATTTTA
1 AATTATTAATATTTT-ATTTTA
*
36161090 AATTATTACTATTTTATTT
1 AATTATTAATATTTTATTT
36161109 GGGTTGTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
AATTATTAATATTTTATTTTA
Found at i:36163280 original size:38 final size:39
Alignment explanation
Indices: 36163228--36163306 Score: 151
Period size: 38 Copynumber: 2.1 Consensus size: 39
36163218 GACCTAGCTA
36163228 CGCTCCCTCTATTTTATTCGATCTTTCCGAATGTTCAAC
1 CGCTCCCTCTATTTTATTCGATCTTTCCGAATGTTCAAC
36163267 CGCT-CCTCTATTTTATTCGATCTTTCCGAATGTTCAAC
1 CGCTCCCTCTATTTTATTCGATCTTTCCGAATGTTCAAC
36163305 CG
1 CG
36163307 GGATCTCTCT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 36 0.90
39 4 0.10
ACGTcount: A:0.18, C:0.30, G:0.11, T:0.41
Consensus pattern (39 bp):
CGCTCCCTCTATTTTATTCGATCTTTCCGAATGTTCAAC
Found at i:36166874 original size:28 final size:28
Alignment explanation
Indices: 36166802--36166879 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 28
36166792 CTGTAAAAGT
* * * *
36166802 GATTAGGCCTATTGTGCCATATAGATGT
1 GATTGGGCCTAATGGGCCATATAGATGA
36166830 GATTTGGGCCTAATGGGCCATAT-GAATGA
1 GA-TTGGGCCTAATGGGCCATATAG-ATGA
*
36166859 GATTGGGCCTAGTGGGCCATA
1 GATTGGGCCTAATGGGCCATA
36166880 AGCATGTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
28 21 0.49
29 22 0.51
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.29
Consensus pattern (28 bp):
GATTGGGCCTAATGGGCCATATAGATGA
Found at i:36174612 original size:47 final size:47
Alignment explanation
Indices: 36174553--36174924 Score: 463
Period size: 47 Copynumber: 8.1 Consensus size: 47
36174543 TTAGGATTTT
* ** * * *
36174553 ATGTGATAAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36174600 ATGTGATGAATGTGAACATTCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36174647 ATGTGATGAATGTGAACATGCATATGTGTGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36174693 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36174740 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36174787 ATGTGATGAATGTGAATATGCATATATGTGATAAGCCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36174834 ATGTGATGAATGTG-A-A--C--ATATGTGATAAGACAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
36174875 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCGGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
36174922 ATG
1 ATG
36174925 CGAAATGTGT
Statistics
Matches: 292, Mismatches: 26, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
41 33 0.11
42 1 0.00
43 2 0.01
45 1 0.00
46 47 0.16
47 208 0.71
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36174726 original size:140 final size:141
Alignment explanation
Indices: 36174553--36174852 Score: 458
Period size: 140 Copynumber: 2.1 Consensus size: 141
36174543 TTAGGATTTT
* ** *
36174553 ATGTGATAAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
* *
36174618 TTCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAG-
66 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGC
* *
36174682 GCGAATGGCCA
131 CCAAATGGCCA
* * *
36174693 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
* * * *
36174758 TGCATATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAATATGCATATATGTGATAAGC
66 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGC
36174823 CCAAATGGCCA
131 CCAAATGGCCA
36174834 ATGTGATGAATGTGAACAT
1 ATGTGATGAATGTGAACAT
36174853 ATGTGATAAG
Statistics
Matches: 144, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
140 116 0.81
141 28 0.19
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.27
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGC
CCAAATGGCCA
Found at i:36175080 original size:46 final size:46
Alignment explanation
Indices: 36174898--36175062 Score: 267
Period size: 46 Copynumber: 3.6 Consensus size: 46
36174888 GGAAGTGTAT
* * *
36174898 ATATGTGGTAAAGCGGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
36174944 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
36174990 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
** **
36175036 ATATGTTGTAAAGCTAAATGGCTAATG
1 ATATGAGGTAAAGCCGAATGGCTAATG
36175063 TGAGATATGA
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 112 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:36176612 original size:40 final size:40
Alignment explanation
Indices: 36176557--36176931 Score: 610
Period size: 40 Copynumber: 9.4 Consensus size: 40
36176547 TGAGAGTTAT
*
36176557 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
36176597 ATATATCCGGGCTAAG-TCCTGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCC-GAAGAGCATTCGTGCTAGTG
36176637 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* * *
36176677 ATGTATCTGGGCTAAG-TCTCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTC-CGAAGAGCATTCGTGCTAGTG
36176717 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
36176757 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
36176797 ATCTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
36176837 ATATATCCAGGCTAAGTTACGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
36176877 ATATATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
36176917 ATATATCTGGGCTAA
1 ATATATCCGGGCTAA
36176932 ACCTCGAAGG
Statistics
Matches: 311, Mismatches: 20, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
39 4 0.01
40 302 0.97
41 5 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:36177047 original size:57 final size:57
Alignment explanation
Indices: 36176959--36177090 Score: 187
Period size: 57 Copynumber: 2.3 Consensus size: 57
36176949 GCTGGAATTA
* *
36176959 TGAGGCACTGTGTGTGCAAGTTCTCCAATCGAGCACTATGTGTGCCAGATCAGT-AG
1 TGAGGCACTGTGTGTGCGAGTTCTCCAATCGAGCACTATGTGTGCCAAATCAGTCAG
* * *
36177015 TTGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAAATCAGTCAG
1 -TGAGGCACTGTGTGTGCGAGTTCTCCAATCGAGCACTATGTGTGCCAAATCAGTCAG
*
36177073 TG-GGCACTGTGTATGCGA
1 TGAGGCACTGTGTGTGCGA
36177091 AGTGTGTTTC
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
56 14 0.21
57 51 0.76
58 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCGAGTTCTCCAATCGAGCACTATGTGTGCCAAATCAGTCAG
Found at i:36177061 original size:28 final size:28
Alignment explanation
Indices: 36176963--36177062 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
36176953 GAATTATGAG
* * *
36176963 GCACTGTGTGTGCAAGTTCTCCAATCGA
1 GCACTATGTGTGCGAGTTCTTCAATCGA
* * * * *
36176991 GCACTATGTGTGCCAGATCAGT-AGTTGA
1 GCACTATGTGTGCGAGTTC-TTCAATCGA
36177019 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTCAATCGA
36177048 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
36177063 AATCAGTCAG
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
28 36 0.63
29 21 0.37
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTCAATCGA
Found at i:36177079 original size:28 final size:28
Alignment explanation
Indices: 36176991--36177091 Score: 80
Period size: 28 Copynumber: 3.6 Consensus size: 28
36176981 CTCCAATCGA
* *
36176991 GCACTATGTGTGCCAGATCAGT-AGTTGAG
1 GCACTATGTGTGCGAAATCAGTCAG-TG-G
** * * *
36177020 GCACTATGTGTGCGAGTTC-TTCAATCGA
1 GCACTATGTGTGCGAAATCAGTCAGT-GG
36177048 GCACTATGTGTGCGAAATCAGTCAGTGG
1 GCACTATGTGTGCGAAATCAGTCAGTGG
* *
36177076 GCACTGTGTATGCGAA
1 GCACTATGTGTGCGAA
36177092 GTGTGTTTCA
Statistics
Matches: 57, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
28 34 0.60
29 23 0.40
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAAATCAGTCAGTGG
Found at i:36180927 original size:47 final size:47
Alignment explanation
Indices: 36180865--36181196 Score: 511
Period size: 47 Copynumber: 7.1 Consensus size: 47
36180855 TTAGGATTTT
* ** * * * *
36180865 ATGTGATAAATGTGAATGTGTACATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36180912 ATGTCATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36180959 ATGTGATCAATGTGAACATGCATATATGTGGTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36181006 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36181053 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36181100 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36181147 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
36181194 ATG
1 ATG
36181197 CGAAACGTGT
Statistics
Matches: 266, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 266 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36181237 original size:46 final size:46
Alignment explanation
Indices: 36181182--36181306 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 46
36181172 ATGTGATAAG
36181182 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAA
1 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAA
*
36181228 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGGTAAA
1 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAA
* * * **
36181274 GCCAAATGGCTAATGTGAGATATGTATGAGATG
1 GCCGAATGGCTAATGCGAAACGTGTATGAGATG
36181307 TGTATATATA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.34, C:0.10, G:0.32, T:0.24
Consensus pattern (46 bp):
GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAA
Found at i:36181266 original size:141 final size:138
Alignment explanation
Indices: 36180865--36181291 Score: 391
Period size: 141 Copynumber: 3.0 Consensus size: 138
36180855 TTAGGATTTT
* ** * * * * *
36180865 ATGTGATAAATGTGAATGTGTACATATGAGATAAGGCCGAATGGCAAATGTC-ATGAATGTGAAC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATG-CGA-GAACGTGAAC
* * * * * *
36180929 ATGCATAT-ATGAGATAAGGCCGAATGGCCAATGTGATCAATGTGAACATGCATATATGTGGTAA
64 ATGCATATGA-GTGATAAAGCCGAATGGCCAATGCGA-GAACGTGAACATGCATATGTGT-GTAA
36180993 GGCCGAATGGCCA
126 GGCCGAATGGCCA
* * * *
36181006 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACA
* * * *
36181071 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
65 TGCATATGAGTGATAAAGCCGAATGGCCAATGCGA-GAACGTGAACATGCATATGTGTG-TAAGG
36181136 CCGAATGGCCA
128 CCGAATGGCCA
* *
36181147 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCTAATGCGA-AACGTGTATGA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG-A--A
* * * * *
36181211 GATGGATATGAG-G-TAAAGCCGAATGGCTAATGCGA-AACGTGTATGAGATGGATATGTG-GTA
63 CATGCATATGAGTGATAAAGCCGAATGGCCAATGCGAGAACGTG-A--ACATGCATATGTGTGTA
* * *
36181272 AAGCCAAATGGCTA
125 AGGCCGAATGGCCA
36181286 ATGTGA
1 ATGTGA
36181292 GATATGTATG
Statistics
Matches: 245, Mismatches: 32, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
138 5 0.02
139 25 0.10
140 22 0.09
141 183 0.75
142 10 0.04
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (138 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACAT
GCATATGAGTGATAAAGCCGAATGGCCAATGCGAGAACGTGAACATGCATATGTGTGTAAGGCCG
AATGGCCA
Found at i:36184440 original size:79 final size:80
Alignment explanation
Indices: 36184277--36184456 Score: 197
Period size: 79 Copynumber: 2.3 Consensus size: 80
36184267 TCGTTCAAAT
* * * *
36184277 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTT
1 GCCTTCGAGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATAT
* *
36184341 AGTAACTCGCACTAAT
65 AGTAACTAGCACTAAA
* **
36184357 GCCTTTGAG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATAT
* *
36184420 GGTCACTTAGCAC-AAA
65 AGTAAC-TAGCACTAAA
*
36184436 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGAGACTTAGCCCGGA
36184457 CATCATTCGA
Statistics
Matches: 83, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.04
79 56 0.67
80 24 0.29
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
GCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
GTAACTAGCACTAAA
Found at i:36184456 original size:40 final size:40
Alignment explanation
Indices: 36184253--36184456 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
36184243 TCGAATTTAA
** *
36184253 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36184293 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
36184333 CCGGATTTAGTAACTCGCACTAATGCCTTTGAG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36184372 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36184412 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36184452 CCGGA
1 CCGGA
36184457 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 92 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36187194 original size:28 final size:28
Alignment explanation
Indices: 36187154--36187302 Score: 235
Period size: 28 Copynumber: 5.3 Consensus size: 28
36187144 TTAAGTCCGT
* *
36187154 ACACTCAGTGCTATGTAATCAAACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGC
36187182 ACACTTAGTGCTATATAATCAAACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGC
36187210 ACACTTAGTGCTATATAATCAAACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGC
36187238 ACACTTAGTGCTATATAATCAAACTCGC
1 ACACTTAGTGCTATATAATCAAACTCGC
* * * *
36187266 ACACTTAGTGCTGTACAATTTAAACCCGC
1 ACACTTAGTGCTATATAA-TCAAACTCGC
36187295 ACACTTAG
1 ACACTTAG
36187303 CGCCAATCTC
Statistics
Matches: 114, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
28 98 0.86
29 16 0.14
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
ACACTTAGTGCTATATAATCAAACTCGC
Found at i:36194484 original size:25 final size:26
Alignment explanation
Indices: 36194467--36194560 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 26
36194457 ATATTAAGTC
36194467 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
36194494 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
* *
36194522 CGCACACTTAGTGCTATA-ATAAACT
1 CGCACACTCAGTGCTATATATCAACT
*
36194547 CGCACA-TTAGTGCT
1 CGCACACTCAGTGCT
36194561 GTACAATTTA
Statistics
Matches: 64, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
24 8 0.12
25 10 0.16
26 2 0.03
27 22 0.34
28 22 0.34
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:36194530 original size:28 final size:28
Alignment explanation
Indices: 36194467--36194585 Score: 149
Period size: 28 Copynumber: 4.4 Consensus size: 28
36194457 ATATTAAGTC
*
36194467 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
36194494 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
36194522 CGCACACTTAGTGC--TATAAT-AAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
36194547 CGCACA-TTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
36194575 CGCACACTTAG
1 CGCACACTTAG
36194586 CGCCAATCTC
Statistics
Matches: 83, Mismatches: 3, Indels: 10
0.86 0.03 0.10
Matches are distributed among these distances:
24 7 0.08
25 11 0.13
26 10 0.12
27 23 0.28
28 28 0.34
29 4 0.05
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36194579 original size:53 final size:54
Alignment explanation
Indices: 36194466--36194585 Score: 154
Period size: 53 Copynumber: 2.2 Consensus size: 54
36194456 TATATTAAGT
* * *
36194466 CCGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGC-ATATAATAAACTCGCACACTTAGTGCTATACAATCAAAC
* * *
36194521 TCGCACACTTAGTGC-TATAATAAACTCGCACA-TTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCATATAATAAACTCGCACACTTAGTGCTATACAA-TCAAAC
36194574 CCGCACACTTAG
1 CCGCACACTTAG
36194586 CGCCAATCTC
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
52 12 0.21
53 32 0.56
55 13 0.23
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (54 bp):
CCGCACACTTAGTGCATATAATAAACTCGCACACTTAGTGCTATACAATCAAAC
Found at i:36219459 original size:40 final size:39
Alignment explanation
Indices: 36219399--36219580 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
36219389 GATGATAATA
* * * *
36219399 GGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCC
1 GGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTAATACC
*
36219439 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATACC
* *
36219479 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTATACT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATACC
* *
36219518 GAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT-ACC
36219558 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
36219581 AGCTAGTGGC
Statistics
Matches: 127, Mismatches: 11, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 36 0.28
40 88 0.69
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATACC
Found at i:36219594 original size:40 final size:40
Alignment explanation
Indices: 36219399--36219603 Score: 190
Period size: 40 Copynumber: 5.2 Consensus size: 40
36219389 GATGATAATA
* *
36219399 GGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCC
1 GGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGGCTATA-ACC
*
36219439 GGGCTAAGTCCCGAAGGCATTTGTGC--G-AGCTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA-TAA--CC
* *** *
36219479 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT-ACT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTATAACC
* * **
36219518 GAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTATAACC
* *
36219558 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTATAACC
36219598 -GGCTAA
1 GGGCTAA
36219604 ACTCCGAAGG
Statistics
Matches: 139, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
37 4 0.03
38 1 0.01
39 41 0.29
40 86 0.62
41 3 0.02
42 2 0.01
43 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTATAACC
Found at i:36219613 original size:79 final size:79
Alignment explanation
Indices: 36219399--36219603 Score: 256
Period size: 79 Copynumber: 2.6 Consensus size: 79
36219389 GATGATAATA
36219399 GGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCC-GGCTAAGTCCCGAAGGCATTTG
* *
36219462 TGCGAGCTACTAATTCC
63 TGCAAGCTACTAATACC
* * *** *
36219479 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CTGAGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCG-GCTAAGTCCCGAAGGCATTTGTG
*
36219543 CAAGTTACT-ATAACC
65 CAAGCTACTAAT-ACC
36219558 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
36219604 ACTCCGAAGG
Statistics
Matches: 105, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.67
80 29 0.28
81 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAAGTCCCGAAGGCATTTGTGC
AAGCTACTAATACC
Found at i:36228970 original size:57 final size:57
Alignment explanation
Indices: 36228903--36229014 Score: 188
Period size: 57 Copynumber: 2.0 Consensus size: 57
36228893 CATTTTTGAA
* * *
36228903 CCCTTAAAGCATGAGCTTTCAAATGAGGGTACTATTTTGCAAAATGGTTGAAAGTAC
1 CCCTTAAAGCATGAGCTTTCAAATGAGGGTACTATATTGAAAAATGATTGAAAGTAC
*
36228960 CCCTTGAAGCATGAGCTTTCAAATGAGGGTACTATATTGAAAAATGATTGAAAGT
1 CCCTTAAAGCATGAGCTTTCAAATGAGGGTACTATATTGAAAAATGATTGAAAGT
36229015 CTAAGGTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.29
Consensus pattern (57 bp):
CCCTTAAAGCATGAGCTTTCAAATGAGGGTACTATATTGAAAAATGATTGAAAGTAC
Found at i:36231302 original size:39 final size:40
Alignment explanation
Indices: 36231085--36231302 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
36231075 CGGATGATAA
* *
36231085 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
36231125 CCGGGCTAAGCCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
36231165 CTGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36231205 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36231245 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
36231285 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36231303 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36232079 original size:56 final size:56
Alignment explanation
Indices: 36231993--36232112 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
36231983 ACAAGGGATG
36231993 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
36232049 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
36232105 ATGGGCAA
1 ATGGGCAA
36232113 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:36233339 original size:39 final size:40
Alignment explanation
Indices: 36233238--36233388 Score: 177
Period size: 40 Copynumber: 3.8 Consensus size: 40
36233228 TCGAATGATG
* *
36233238 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36233277 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36233318 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
36233357 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
36233389 TAGCTATATC
Statistics
Matches: 98, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
39 35 0.36
40 50 0.51
41 12 0.12
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36233401 original size:79 final size:80
Alignment explanation
Indices: 36233238--36233388 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 80
36233228 TCGAATGATG
*
36233238 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
36233303 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
* * * **
36233318 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
36233380 TTGTGCGAG
64 TTGTGCGAG
36233389 TAGCTATATC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
78 1 0.02
79 44 0.70
80 18 0.29
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAT
Found at i:36233415 original size:39 final size:39
Alignment explanation
Indices: 36233291--36233415 Score: 148
Period size: 39 Copynumber: 3.2 Consensus size: 39
36233281 GGACTAAGAT
* *
36233291 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGC
1 CCGAAGGCATTTGTGCGAGATACTAA-TCCGGGTTAAATC
* *
36233330 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACT-AATCCGGGTTAAATC
*
36233370 CCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAATT
1 CCGAAGGCATTTGTGCGAGATA-CTA-ATCCGGGTTAAATC
36233409 CCGAAGG
1 CCGAAGG
36233416 TACGTGATTT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
39 47 0.62
40 29 0.38
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATCCGGGTTAAATC
Found at i:36236009 original size:46 final size:47
Alignment explanation
Indices: 36235956--36236080 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 47
36235946 ATTTAGATCT
*
36235956 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-C-GAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACAAAGA--TATAGCC
* *
36236002 AGTGTAAGACATATCTGGGACATGCATCGG-CTACAAAGATATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTACAAAGATATAGCC
36236048 AGTGTAAGACCATGTCTGGGACATAGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
36236081 ACCTTACCTC
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
45 4 0.06
46 42 0.61
47 16 0.23
48 7 0.10
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTACAAAGATATAGCC
Found at i:36238954 original size:23 final size:23
Alignment explanation
Indices: 36238922--36238971 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
36238912 GTGTCCCAAG
36238922 CACACAGGCGTGTGCTTTGCCTC
1 CACACAGGCGTGTGCTTTGCCTC
*
36238945 CACACGGGCGTGTGCTTTGCCTC
1 CACACAGGCGTGTGCTTTGCCTC
36238968 CACA
1 CACA
36238972 AGGACGTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.14, C:0.36, G:0.26, T:0.24
Consensus pattern (23 bp):
CACACAGGCGTGTGCTTTGCCTC
Found at i:36245381 original size:47 final size:48
Alignment explanation
Indices: 36245311--36245533 Score: 235
Period size: 46 Copynumber: 4.8 Consensus size: 48
36245301 GGGTAAGTTA
* *
36245311 CCGATGCTATGTCCTAGACATGGTCTTACACTGGCTCACATCT-AAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAAG
* ** **
36245358 TCGATGCCATGTCCCAGACATGGTCTTACAC-AACT-ATCATCTCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCAAAG
* * ** * *
36245405 CCGATG-CATGTCCCAGACAT-GTCTTACATTGGCTTATGTCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAAG
* * *
36245451 TCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAAG
*
36245497 CCGATGCCATGTCCCAGACATGGTCTTTCACTGGCTC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
36245534 TTATAATGTG
Statistics
Matches: 143, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
45 9 0.06
46 71 0.50
47 50 0.35
48 13 0.09
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAAG
Found at i:36254193 original size:25 final size:27
Alignment explanation
Indices: 36254164--36254223 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
36254154 TTTTACTGTA
36254164 TTTATTATTACGA-ATATTT-T-AAATT
1 TTTATTATTA-GATATATTTATAAAATT
*
36254189 TTTATGATTAGATATATTTATAAAATT
1 TTTATTATTAGATATATTTATAAAATT
*
36254216 ATTATTAT
1 TTTATTAT
36254224 AATTATTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 2 0.07
25 15 0.52
26 1 0.03
27 11 0.38
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (27 bp):
TTTATTATTAGATATATTTATAAAATT
Found at i:36255190 original size:5 final size:5
Alignment explanation
Indices: 36255172--36255203 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
36255162 AAGATTCAGT
36255172 TTTTC TTCTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC T
36255204 CTTCATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:36255200 original size:15 final size:16
Alignment explanation
Indices: 36255172--36255227 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
36255162 AAGATTCAGT
36255172 TTTTCTTCTTCTTTTC
1 TTTTCTTCTTCTTTTC
36255188 TTTTCTT-TTCTTTTC
1 TTTTCTTCTTCTTTTC
* * *
36255203 TCTTCATCTAC-TTTC
1 TTTTCTTCTTCTTTTC
*
36255218 TCTTCTTCTT
1 TTTTCTTCTT
36255228 TTCCCCCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 25 0.74
16 9 0.26
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTCTTCTTCTTTTC
Found at i:36261039 original size:95 final size:94
Alignment explanation
Indices: 36260767--36261224 Score: 466
Period size: 94 Copynumber: 4.9 Consensus size: 94
36260757 TGATTTGTGC
* * * **
36260767 GCCAGTGTAAAACATGTCTGGGACATGCATCGACCACATTATGATAGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAACATGATAGCCAGTGTAAGACCATGTC
* * *
36260832 TGGAACATGGCATCGGCATCA-AGACGAGG
66 TGGGACATGGCATCGGCA-CAGAGATGAGT
* * * *
36260861 GCTAGTGTAAGACATGTCTGGGACATGCATCAG--TCATTCTATGATAGCCAATGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCA-AC-ATGATAGCCAGTGTAAGACCATG
*
36260924 TCTGGGACATGGCATCGGCACAGAGTTGAGT
64 TCTGGGACATGGCATCGGCACAGAGATGAGT
* * * *
36260955 GCCATTGTAAGACATGTCTGGGACATGCATTGGCCTCAACAGAGATAGCCAGTGTAAGACTATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAACA-TGATAGCCAGTGTAAGACCATGT
* * *
36261020 CTAGGACATGGAATTGGCACAGAGATGAGT
65 CTGGGACATGGCATCGGCACAGAGATGAGT
* * * * **
36261050 GCCAGTGTAAGACATGTTTGGGACATGCATCGGTCTCGACAGGGATAGCCAGTGTAAGA-TGTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAACA-TGATAGCCAGTGTAAGACCATGT
* *
36261114 CTGGGACA-CGCATTGGCTA-AGAGAT--GT
65 CTGGGACATGGCATCGGC-ACAGAGATGAGT
* * * * * * *
36261141 GCTAGTGTAAGACAT-TCTGGGACATGCATCAGCACGCTTATATGAGAGCCAGTGTAAAACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTC-AACATGATAGCCAGTGTAAGACCATG
36261205 TCTGGGACATGGCATCGGCA
64 TCTGGGACATGGCATCGGCA
36261225 ATATATCCCA
Statistics
Matches: 306, Mismatches: 47, Indels: 24
0.81 0.12 0.06
Matches are distributed among these distances:
90 15 0.05
91 32 0.10
92 16 0.05
93 23 0.08
94 117 0.38
95 100 0.33
96 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (94 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAACATGATAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCACAGAGATGAGT
Found at i:36261230 original size:47 final size:45
Alignment explanation
Indices: 36260767--36261230 Score: 258
Period size: 47 Copynumber: 9.9 Consensus size: 45
36260757 TGATTTGTGC
* * *
36260767 GCCAGTGTAAAACATGTCTGGGACATGCATCGACCACAT-TATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCG-GCA-ATATATGAGA
* * * *
36260813 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-ATCAAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAAT--ATATGAGA
* * * * *
36260861 GCTAGTGTAAGACATGTCTGGGACATGCATCAGTCATTCTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCAATATATGAGA
* * *
36260907 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGT-TGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-ATA-TATGAGA
* * * * *
36260955 GCCATTGTAAGACATGTCTGGGACATGCATTGGCCTCAACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG---CAATATATGAGA
* * * * * *
36261002 GCCAGTGTAAGACTATGTCTAGGACATGGAATTGGCACAGAGATGAGT
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCA-ATATATGAGA
* *** * * *
36261050 GCCAGTGTAAGACATGTTTGGGACATGCATCGGTCTCGACAGGGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CAATATA-TGAGA
** * * * * *
36261097 GCCAGTGTAAGATGTGTCTGGGACACGCATTGGCTA-AGA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAATATATGA-GA
* * *
36261141 GCTAGTGTAAGACAT-TCTGGGACATGCATCAGCACGCTTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA---ATATATGAGA
*
36261188 GCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCAATATAT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAATATAT
36261231 CCCATGTTGA
Statistics
Matches: 319, Mismatches: 69, Indels: 59
0.71 0.15 0.13
Matches are distributed among these distances:
43 17 0.05
44 12 0.04
45 4 0.01
46 47 0.15
47 138 0.43
48 74 0.23
49 19 0.06
50 8 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAATATATGAGA
Found at i:36268701 original size:40 final size:40
Alignment explanation
Indices: 36268653--36268939 Score: 468
Period size: 40 Copynumber: 7.2 Consensus size: 40
36268643 GAACTAAGAT
*
36268653 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
*
36268693 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
*
36268733 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
* *
36268773 CCGAAGGCATTTGTGCTAGTTGCTATATCCAGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
* *
36268813 CCGAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
* * *
36268853 CCGAAGGCATTTGTGCTAGTTGCTAAATACGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
36268893 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCT-AGATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAG-TC
36268933 CCGAAGG
1 CCGAAGG
36268940 TACTTGGGTT
Statistics
Matches: 227, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
39 1 0.00
40 226 1.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
Found at i:36275630 original size:19 final size:19
Alignment explanation
Indices: 36275606--36275661 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
36275596 GTATTCGATT
36275606 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
36275625 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
36275641 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
36275660 AC
1 AC
36275662 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:36275677 original size:33 final size:35
Alignment explanation
Indices: 36275604--36275670 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
36275594 GAGTATTCGA
*
36275604 TTACATGTGAATTTATATTGAACATGTGTATTTAG
1 TTACATGTGAATTTATATTGAACATGTATATTTAG
*
36275639 TTACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TTACATGTGAATTTATATTGAACATGTATATTTA
36275671 TATACATTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.23
34 1 0.03
35 22 0.73
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (35 bp):
TTACATGTGAATTTATATTGAACATGTATATTTAG
Found at i:36276471 original size:40 final size:40
Alignment explanation
Indices: 36276423--36276669 Score: 440
Period size: 40 Copynumber: 6.2 Consensus size: 40
36276413 GAACTAAGAT
*
36276423 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
36276463 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
36276503 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
* **
36276543 CCGAAGGCATTTGTGCTAGTTACTATATTTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
*
36276583 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
*
36276623 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
36276663 CCGAAGG
1 CCGAAGG
36276670 TACTTGGGTT
Statistics
Matches: 199, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 199 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
Found at i:36276600 original size:22 final size:22
Alignment explanation
Indices: 36276535--36276600 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 22
36276525 CTATATCCGG
36276535 GCTAAGTCCCGAAGGCATTTGT
1 GCTAAGTCCCGAAGGCATTTGT
** * * *
36276557 GCT-AGTTAC-TA--TATTTGG
1 GCTAAGTCCCGAAGGCATTTGT
36276575 GCTAAGTCCCGAAGGCATTTGT
1 GCTAAGTCCCGAAGGCATTTGT
36276597 GCTA
1 GCTA
36276601 GTTGCTATAT
Statistics
Matches: 30, Mismatches: 10, Indels: 8
0.62 0.21 0.17
Matches are distributed among these distances:
18 8 0.27
19 4 0.13
20 2 0.07
21 4 0.13
22 12 0.40
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (22 bp):
GCTAAGTCCCGAAGGCATTTGT
Found at i:36280307 original size:119 final size:120
Alignment explanation
Indices: 36280125--36280340 Score: 305
Period size: 119 Copynumber: 1.8 Consensus size: 120
36280115 TACTCGTTCA
*
36280125 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
*
36280190 TTAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
* * **
36280245 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
36280307 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
36280341 GCCCGGACAT
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 4 0.05
119 60 0.71
120 21 0.25
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
Found at i:36280347 original size:40 final size:40
Alignment explanation
Indices: 36280104--36280347 Score: 273
Period size: 40 Copynumber: 6.1 Consensus size: 40
36280094 CGGAATTTAA
** *
36280104 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36280144 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36280184 CCGGATTTAGTAACTAGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36280224 CCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36280263 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36280303 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36280343 CCGGA
1 CCGGA
36280348 CATCATTTGA
Statistics
Matches: 175, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 130 0.74
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36285290 original size:47 final size:45
Alignment explanation
Indices: 36285176--36285537 Score: 261
Period size: 47 Copynumber: 7.7 Consensus size: 45
36285166 CGATTTGTGC
* * * *
36285176 GCCAGTGTAAGACATGTCTGGGACATCCATCTGCCA-CATTA-TGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCATC--TAGAGAGA
* *
36285222 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATCTAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCTAGA-GAGA
* * * *
36285270 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTA-TGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCAT-CTAGAGAGA
36285316 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-C-AGAGATGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCTAGAGA-GA
* * * *
36285362 GTGCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGACAGAGATA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATC--TAGAGAGA
* ** * * *
36285411 GCCAGTGTAAGACGTGTCTTTGACATGCATCAGC-T-AAGAGATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCTAGAGA-GA
* * * *
36285455 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA-TC-TAGA-GAGA
*
36285503 GCCAGTTTAAGACCATGTCTGGGACATGCCATCGG
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATCGG
36285538 TAATATATCC
Statistics
Matches: 253, Mismatches: 38, Indels: 46
0.75 0.11 0.14
Matches are distributed among these distances:
43 5 0.02
44 31 0.12
45 3 0.01
46 41 0.16
47 94 0.37
48 51 0.20
49 18 0.07
50 10 0.04
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCTAGAGAGA
Found at i:36285340 original size:94 final size:93
Alignment explanation
Indices: 36285179--36285537 Score: 410
Period size: 94 Copynumber: 3.8 Consensus size: 93
36285169 TTTGTGCGCC
* * * * *
36285179 AGTGTAAGACATGTCTGGGACATCCATCTGCCACATTATGATAGCCAGTGTAAGACCATATCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
* *
36285244 GACATGGCATCGGCATCTAGACGAGGGCT
66 GACATGGCATCGGCATCAAGA-GAGTGCT
36285273 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
*
36285338 GACATGGCATCGGCA-CAGAGATGAGTGCC
66 GACATGGCATCGGCATCA-AGA-GAGTGCT
* * * *
36285367 AGTGTAAGACATGTCTGGGACATGTATCGGCC-TCGAC-AGAGATAGCCAGTGTAAGA-CGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTA-TGATAGCCAGTGTAAGACCATGTC
** *
36285429 TTTGACAT-GCATCAGC-T-AAGAGATGTGCT
63 TGGGACATGGCATCGGCATCAAGAGA-GTGCT
* *
36285458 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCATA-TATGAGAGCCAGTTTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGATAGCCAGTGTAAGACCATGTC
*
36285522 TGGGACATGCCATCGG
63 TGGGACATGGCATCGG
36285538 TAATATATCC
Statistics
Matches: 225, Mismatches: 27, Indels: 26
0.81 0.10 0.09
Matches are distributed among these distances:
90 2 0.01
91 35 0.16
92 15 0.07
93 23 0.10
94 131 0.58
95 19 0.08
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAAGAGAGTGCT
Found at i:36285429 original size:141 final size:135
Alignment explanation
Indices: 36285176--36285537 Score: 372
Period size: 141 Copynumber: 2.6 Consensus size: 135
36285166 CGATTTGTGC
* * * *
36285176 GCCAGTGTAAGACATGTCTGGGACATCCATCTGCCACATTATGA-TAGCCAGTGTAAGACCATAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCACAATATGAGT-GCCAGTGTAAGACCATGT
* *
36285240 CTGGGACATGGCATCGGCATCTAGACGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCC
64 CTGGGACAT-GCATCGGCA-CTAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAG-C
**
36285305 ATACTATGAT-A
126 -TAAGA-GATGA
*
36285316 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCCAGTGTAAGA-CATG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACA-ATATGAGTGCCAGTGTAAGACCATG
* * * **
36285380 TCTGGGACATGTATCGGC-CTCGACAGAGATAGCCAGTGTAAGACGTGTCTTTGACATGCATCAG
63 TCTGGGACATGCATCGGCACTAGAC-GAG--AGCCAGTGTAAGACATGTCTGGGACATGCATCAG
*
36285444 CTAAGAGATGT
125 CTAAGAGATGA
* * * *
36285455 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCATATATGAGAGCCAGTTTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA--CA-ATATGAGTGCCAGTGTAAGACCATG
36285520 TCTGGGACATGCCATCGG
63 TCTGGGACATG-CATCGG
36285538 TAATATATCC
Statistics
Matches: 188, Mismatches: 22, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
137 8 0.04
138 22 0.12
139 36 0.19
140 35 0.19
141 66 0.35
142 20 0.11
143 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (135 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAATATGAGTGCCAGTGTAAGACCATGTCT
GGGACATGCATCGGCACTAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTAAGA
GATGA
Found at i:36288520 original size:24 final size:24
Alignment explanation
Indices: 36288489--36288682 Score: 87
Period size: 25 Copynumber: 8.0 Consensus size: 24
36288479 TACCAATATA
* *
36288489 TCAGCTCGTAAGAGTTTACTGTTT
1 TCAGCTCGTAAGAGCTTACTGTTC
* * *
36288513 TCATCTCGTTAGAGCTTATTGTTC
1 TCAGCTCGTAAGAGCTTACTGTTC
*
36288537 TCAGCTCGTATGAGCTTACTGGTT-
1 TCAGCTCGTAAGAGCTTACT-GTTC
** * *
36288561 T-AGCTTATCAGAGCTTACCGTT-
1 TCAGCTCGTAAGAGCTTACTGTTC
* *
36288583 TCAGCTC-AATAGAGCTTACTGTCC
1 TCAGCTCGTA-AGAGCTTACTGTTC
* * *
36288607 ATAAGCTC-AATAGAGCTTACTGTCC
1 -TCAGCTCGTA-AGAGCTTACTGTTC
* * *
36288632 ATAAGCTC-AATAGAGCTTACTGTCC
1 -TCAGCTCGTA-AGAGCTTACTGTTC
*
36288657 ATAAGCTCAG-AAGGAGCTTACTGTTC
1 -TCAGCTC-GTAA-GAGCTTACTGTTC
36288683 ATAGCTCAAA
Statistics
Matches: 141, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
22 4 0.03
23 28 0.20
24 36 0.26
25 60 0.43
26 13 0.09
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (24 bp):
TCAGCTCGTAAGAGCTTACTGTTC
Found at i:36288618 original size:25 final size:25
Alignment explanation
Indices: 36288585--36288696 Score: 174
Period size: 25 Copynumber: 4.5 Consensus size: 25
36288575 TTACCGTTTC
36288585 AGCTCAATAGAGCTTACTGTCCATA
1 AGCTCAATAGAGCTTACTGTCCATA
36288610 AGCTCAATAGAGCTTACTGTCCATA
1 AGCTCAATAGAGCTTACTGTCCATA
36288635 AGCTCAATAGAGCTTACTGTCCATA
1 AGCTCAATAGAGCTTACTGTCCATA
*
36288660 AGCTCAGA-AGGAGCTTACTGTTCAT-
1 AGCTCA-ATA-GAGCTTACTGTCCATA
*
36288685 AGCTCAAAAGAG
1 AGCTCAATAGAG
36288697 TGGAAAATCA
Statistics
Matches: 83, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
24 4 0.05
25 64 0.77
26 15 0.18
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (25 bp):
AGCTCAATAGAGCTTACTGTCCATA
Found at i:36288760 original size:27 final size:27
Alignment explanation
Indices: 36288722--36288774 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
36288712 AATTGACGGA
36288722 GTACTGATGTATATCACCCGAGTATCT
1 GTACTGATGTATATCACCCGAGTATCT
36288749 GTACTGATGTATATCACCCGAGTATC
1 GTACTGATGTATATCACCCGAGTATC
36288775 CTTTGAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (27 bp):
GTACTGATGTATATCACCCGAGTATCT
Found at i:36298274 original size:43 final size:42
Alignment explanation
Indices: 36298128--36298275 Score: 131
Period size: 43 Copynumber: 3.5 Consensus size: 42
36298118 TGAGACATCG
* * * *
36298128 TGTAAGACCGTGTTTGGGACACAGGCTTCG-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGTATTGA-A-TTACA
** ** * *
36298171 -GATAAGACCATGTCTGGGACATCGGCATCGTATTTTATTTCG
1 TG-TAAGACCATGTCTGGGACAGAGGCATCGTATTGAATTACA
36298213 TGTAAGAACC-TGTCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAG-ACCATGTCTGGGACAGAGGCATCG-TATTGAATTACA
*
36298256 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
36298276 GTCAACATTG
Statistics
Matches: 83, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
42 29 0.35
43 51 0.61
44 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGAGGCATCGTATTGAATTACA
Found at i:36304639 original size:25 final size:25
Alignment explanation
Indices: 36304566--36304640 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 25
36304556 ATACATGTAT
* *
36304566 GCTCATATGAGCT-ATGAATAGGTAT
1 GCTCATACGAGCTGA-GAATAGGTAA
*
36304591 GCTC-TCACGAGCTGTA-AATCGGTAA
1 GCTCAT-ACGAGCTG-AGAATAGGTAA
*
36304616 GCTCATACGAGCTGAGAATTGGTAA
1 GCTCATACGAGCTGAGAATAGGTAA
36304641 CCCTAATGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
24 2 0.05
25 37 0.90
26 1 0.02
27 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATAGGTAA
Found at i:36305720 original size:27 final size:26
Alignment explanation
Indices: 36305674--36305779 Score: 122
Period size: 27 Copynumber: 4.0 Consensus size: 26
36305664 CATGGCTGCT
* * *
36305674 AGAACAGATATTCTGACAGAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACC
36305700 AGATACAGATATTGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAGAGCCACC
*
36305727 AGAACAGATATTTGTGGCATAGCCACC
1 AGAACAGATA-TTGTGGCAGAGCCACC
* * *
36305754 AGAAATAGATAATGTGGCAAAGCCAC
1 AG-AACAGATATTGTGGCAGAGCCAC
36305780 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 10 0.14
27 53 0.76
28 7 0.10
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACC
Found at i:36306135 original size:27 final size:26
Alignment explanation
Indices: 36306083--36306161 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 26
36306073 TCGATCGGTC
* * *
36306083 AACAGATATTGTGACAAAGTCGCCAG
1 AACAGATATTGTGGCAAAGCCACCAG
* *
36306109 ATATAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
36306136 AACAGATATTTGTGGCATAGCCACCA
1 AACAGATA-TTGTGGCAAAGCCACCA
36306162 AAACGCTTCC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.16
27 37 0.84
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:36306483 original size:27 final size:27
Alignment explanation
Indices: 36306389--36306503 Score: 158
Period size: 27 Copynumber: 4.3 Consensus size: 27
36306379 GAGGTAAAAT
* * *
36306389 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
36306416 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36306443 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
36306470 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
36306497 AGTAATT
1 GGTAATT
36306504 TGGTAAACGA
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:36316933 original size:119 final size:120
Alignment explanation
Indices: 36316751--36316966 Score: 296
Period size: 119 Copynumber: 1.8 Consensus size: 120
36316741 TCCTCGTTCA
*
36316751 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
36316816 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
* * **
36316871 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
36316933 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
36316967 GCCCGGACAT
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.05
119 60 0.71
120 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACC
Found at i:36316957 original size:79 final size:79
Alignment explanation
Indices: 36316749--36316973 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 79
36316739 GCTCCTCGTT
* * * * * *
36316749 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
36316814 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
36316829 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
*
36316893 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * * *
36316908 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCAGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
36316972 GA
64 GA
36316974 CATCATTCAA
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
78 3 0.02
79 59 0.48
80 59 0.48
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:36316973 original size:40 final size:40
Alignment explanation
Indices: 36316749--36316973 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
36316739 GCTCCTCGTT
* *
36316749 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
36316789 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
36316829 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
36316869 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
36316908 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
36316949 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36316974 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 118 0.73
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:36321385 original size:37 final size:37
Alignment explanation
Indices: 36321329--36321407 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36321319 TTATTACGAA
** *
36321329 GTCTTACCCGGACGTAATCCCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36321366 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36321403 GTCTT
1 GTCTT
36321408 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36321604 original size:47 final size:47
Alignment explanation
Indices: 36321526--36322246 Score: 1228
Period size: 47 Copynumber: 15.2 Consensus size: 47
36321516 CCCTTCGGGA
* * * * * *
36321526 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36321573 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36321620 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36321667 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36321714 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36321761 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36321808 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36321855 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36321902 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36321951 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36321998 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36322047 CTTATCACATATATACACTTTCACATTGATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36322094 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36322141 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36322190 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36322237 ACTT-TCACAT
1 -CTTATCACAT
36322247 TTATCACATC
Statistics
Matches: 642, Mismatches: 25, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
47 501 0.78
48 3 0.00
49 138 0.21
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36321687 original size:94 final size:94
Alignment explanation
Indices: 36321526--36322470 Score: 1304
Period size: 94 Copynumber: 10.1 Consensus size: 94
36321516 CCCTTCGGGA
* * * * * * * *
36321526 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36321591 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
36321620 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
36321685 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
36321714 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
36321779 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
36321808 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
36321873 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
36321902 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36321967 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
36321998 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36322063 ACTTTCACATTGATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
36322094 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
36322159 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
36322190 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCACTT-TCACAT-T-T--A
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC-CTTATCACATATATACA
** * *
36322250 ---TCACA-TCGGC-CATTAGGCC-TTA-TC
65 CTTTCACATTCATCACA-TCGGCCATTAGGC
** * * ** * * *
36322274 ACATATAT-ACACT-TTCACATTCATCACA-TCGGC-CATTAGGCC-TTA----TGA-CATATAT
1 -C-T-TATCACA-TATATACACT-TTCACATTCATCACA-TCGGCCATTAGGCCTTATCACATAT
36322329 ATACACTTTCACATTCATCACATCGGCCATTAGGC
60 ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36322364 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAGATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36322429 ACTTTCACATTTATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
36322460 CTTATCACATA
1 CTTATCACATA
36322471 GAATCCTAAA
Statistics
Matches: 765, Mismatches: 50, Indels: 72
0.86 0.06 0.08
Matches are distributed among these distances:
80 5 0.01
81 1 0.00
82 1 0.00
84 2 0.00
85 11 0.01
86 23 0.03
87 22 0.03
88 11 0.01
89 12 0.02
90 15 0.02
91 5 0.01
92 1 0.00
93 1 0.00
94 329 0.43
95 2 0.00
96 321 0.42
97 3 0.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:36322243 original size:31 final size:31
Alignment explanation
Indices: 36322205--36322277 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
36322195 CACATATATA
36322205 CACTTTCACATTTATCACATCGGCCATTAGG
1 CACTTTCACATTTATCACATCGGCCATTAGG
36322236 CACTTTCACATTTATCACATCGGCCATTAGG
1 CACTTTCACATTTATCACATCGGCCATTAGG
36322267 C-CTTATCACAT
1 CACTT-TCACAT
36322278 ATATACACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 3 0.07
31 38 0.93
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (31 bp):
CACTTTCACATTTATCACATCGGCCATTAGG
Found at i:36322253 original size:78 final size:78
Alignment explanation
Indices: 36322158--36322314 Score: 287
Period size: 78 Copynumber: 2.0 Consensus size: 78
36322148 CATATATATA
* *
36322158 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTTATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
36322223 ATCGGCCATTAGG
66 ATCGGCCATTAGG
*
36322236 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
36322301 ATCGGCCATTAGG
66 ATCGGCCATTAGG
36322314 C
1 C
36322315 CTTATGACAT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.32
Consensus pattern (78 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTAGG
Found at i:36322289 original size:47 final size:47
Alignment explanation
Indices: 36322236--36322470 Score: 389
Period size: 49 Copynumber: 4.9 Consensus size: 47
36322226 GGCCATTAGG
*
36322236 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
36322283 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATGACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACATATATA
36322332 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
* *
36322381 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAGATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
36322428 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
36322471 GAATCCTAAA
Statistics
Matches: 176, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
47 85 0.48
49 91 0.52
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:36322425 original size:96 final size:97
Alignment explanation
Indices: 36322236--36322470 Score: 413
Period size: 96 Copynumber: 2.4 Consensus size: 97
36322226 GGCCATTAGG
36322236 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
1 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
*
36322299 ACATCGGCCATTAGGCCTTATGACATATATATA
66 ACATCGGCCATTAGGCCTTAT-ACAGATATATA
*
36322332 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
*
36322397 ACATCGGCTATTAGGCCTTAT-CAGATATATA
66 ACATCGGCCATTAGGCCTTATACAGATATATA
36322428 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATA
1 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATA
36322471 GAATCCTAAA
Statistics
Matches: 133, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
96 90 0.68
98 43 0.32
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (97 bp):
CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
ACATCGGCCATTAGGCCTTATACAGATATATA
Found at i:36325819 original size:5 final size:5
Alignment explanation
Indices: 36325809--36325833 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
36325799 TATTGGGGTT
36325809 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
36325834 AAATGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:36327762 original size:26 final size:27
Alignment explanation
Indices: 36327732--36327786 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
36327722 GGTACTCAGT
*
36327732 GTAT-GAAATATTGAGAATGGCACTTA
1 GTATCGAAATATTGAGAATGACACTTA
**
36327758 GTATGCGAGGTATTGAGAATGACACTTA
1 GTAT-CGAAATATTGAGAATGACACTTA
36327786 G
1 G
36327787 AGCACGTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.17
28 20 0.83
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (27 bp):
GTATCGAAATATTGAGAATGACACTTA
Found at i:36327825 original size:16 final size:16
Alignment explanation
Indices: 36327804--36327872 Score: 111
Period size: 16 Copynumber: 4.3 Consensus size: 16
36327794 TTGGTTTGCT
36327804 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
* *
36327820 GTAATGGAATAAAGGT
1 GTAATGGAATAGAGGC
*
36327836 GTAATGGAATAGAGGT
1 GTAATGGAATAGAGGC
36327852 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
36327868 GTAAT
1 GTAAT
36327873 AGCAATTCAA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.39, C:0.03, G:0.35, T:0.23
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:36327918 original size:45 final size:44
Alignment explanation
Indices: 36327851--36327948 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 44
36327841 GGAATAGAGG
36327851 TGTAATGGAATAGAGGCGTAATAGCAATTCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AATTC-ATGTGTTTGGTTGAA
* * *
36327896 TGTAATGGAATAGAGGCTTAATAGTATTCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAATTCATGTGTTTGGTTGAA
*
36327940 TGGAATGGA
1 TGTAATGGA
36327949 GGTGTAATAG
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
43 1 0.02
44 24 0.50
45 23 0.48
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.36
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAATTCATGTGTTTGGTTGAA
Found at i:36328126 original size:18 final size:17
Alignment explanation
Indices: 36328105--36328139 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36328095 TTATTATTAA
*
36328105 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
36328123 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
36328140 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:36328211 original size:25 final size:26
Alignment explanation
Indices: 36328183--36328232 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
36328173 ATAATAATAT
36328183 ATGA-TACTATAAAATATAATTTAAC
1 ATGATTACTATAAAATATAATTTAAC
* * *
36328208 ATGATTATTATTAAATATATTTTAA
1 ATGATTACTATAAAATATAATTTAA
36328233 TTAAAATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (26 bp):
ATGATTACTATAAAATATAATTTAAC
Found at i:36328243 original size:18 final size:17
Alignment explanation
Indices: 36328220--36328256 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
36328210 GATTATTATT
36328220 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
36328236 AAATATATGATTTAATA
1 AAATATATGATTTAATA
36328253 AAAT
1 AAAT
36328257 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:36328315 original size:61 final size:60
Alignment explanation
Indices: 36328133--36328317 Score: 161
Period size: 60 Copynumber: 3.1 Consensus size: 60
36328123 ATATAATTTA
*
36328133 ATAAAATTCTTAATAATCAATATTCTTATATGAATTT-C-ATATAATAATATATGATACT
1 ATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAATAATAATATATGATACT
* * * * * * * *
36328191 ATAAAATATAATTTAA-CATGATTATTATTAAAT-ATATTT--TAATTAA-AATATATGAT-TT
1 ATAAAAT-T--CTTAATAATCAATATTCTTATATGA-ATTTACTAAATAATAATATATGATACT
* *
36328249 AATAAAATTCTTAATAATCAATTTTCTTATATGAATTTACTAAAATCATAATATATGATACT
1 -ATAAAATTCTTAATAATCAATATTCTTATATGAATTTACT-AAATAATAATATATGATACT
36328311 ATAAAAT
1 ATAAAAT
36328318 ATAATTTGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 23
0.69 0.14 0.17
Matches are distributed among these distances:
56 4 0.04
57 15 0.16
58 10 0.11
59 20 0.21
60 24 0.25
61 21 0.22
62 1 0.01
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.43
Consensus pattern (60 bp):
ATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAATAATAATATATGATACT
Found at i:36328363 original size:18 final size:17
Alignment explanation
Indices: 36328340--36328376 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
36328330 AATTATTATT
36328340 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
36328356 AAATATATGATTTAATA
1 AAATATATGATTTAATA
36328373 AAAT
1 AAAT
36328377 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:36328386 original size:120 final size:117
Alignment explanation
Indices: 36328085--36328377 Score: 498
Period size: 117 Copynumber: 2.5 Consensus size: 117
36328075 TTAATCATAT
*
36328085 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
*
36328150 CAATATTCTTATATGAATTTCATATAATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTCAAATAATAATATATGATACTATAAAATATAA
*
36328202 TTTAACATGATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
* *
36328267 CAATTTTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTT-C--AAATAATAATATATGATACTATAAAATATAA
36328322 TTTGAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
36328378 TAAAATAATT
Statistics
Matches: 166, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
117 82 0.49
118 1 0.01
120 81 0.49
121 2 0.01
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (117 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
CAATATTCTTATATGAATTTCAAATAATAATATATGATACTATAAAATATAA
Found at i:36328427 original size:47 final size:46
Alignment explanation
Indices: 36328359--36328526 Score: 161
Period size: 47 Copynumber: 3.7 Consensus size: 46
36328349 TTAATTAAAA
*
36328359 TATATG-ATTTAATAAAATTTAAAATAATTATTACTAATAAATTTTCT
1 TATATGAATTT-ATATAATTTAAAATAATTATTA-TAATAAATTTTCT
* * *
36328406 TATTTGAATTTGTATAATTTAAAATAATTATTAT--TAAATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATTATAATAAAT-T-TTCT
* * *
36328451 TA-AT-AATAATATATAATTTCATAA-AATTCTTGATAATAAATTTTCT
1 TATATGAAT-TTATATAATTT-AAAATAATTATT-ATAATAAATTTTCT
36328497 TATATGAATTTATATAATTTAAAATAATTA
1 TATATGAATTTATATAATTTAAAATAATTA
36328527 ATATTAAATA
Statistics
Matches: 96, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
43 3 0.03
44 21 0.22
45 10 0.10
46 9 0.09
47 46 0.48
48 7 0.07
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATTATAATAAATTTTCT
Found at i:36328468 original size:44 final size:43
Alignment explanation
Indices: 36328418--36328560 Score: 139
Period size: 44 Copynumber: 3.2 Consensus size: 43
36328408 TTTGAATTTG
36328418 TATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAT-ATA
* * * *
36328462 TATAATTTCATAA-AATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-AT--TAAATATAAT-TTA-AT-AATATA
*
36328509 TATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAT-ATA
36328553 TATAATTT
1 TATAATTT
36328561 TATAAATTTC
Statistics
Matches: 79, Mismatches: 9, Indels: 22
0.72 0.08 0.20
Matches are distributed among these distances:
43 3 0.04
44 31 0.39
45 10 0.13
46 10 0.13
47 22 0.28
48 3 0.04
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (43 bp):
TATAATTTAAAATAATTATTATTAAATATAATTTAATAATATA
Found at i:36328496 original size:91 final size:91
Alignment explanation
Indices: 36328384--36328599 Score: 342
Period size: 91 Copynumber: 2.4 Consensus size: 91
36328374 AATTTAAAAT
* * * * *
36328384 AATTATTACTAATAAATTTTCTTATTTGAATTTGTATAATTTAAAATAATTATTATTAAATATAA
1 AATTCTTAATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAA
36328449 TTTAATAATAATATATAATTTCATAA
66 TTTAATAATAATATATAATTTCATAA
*
36328475 AATTCTTGATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAA
1 AATTCTTAATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAA
* *
36328540 TTTAATAATGATATATAATTTTATAA
66 TTTAATAATAATATATAATTTCATAA
* *
36328566 ATTTCTTAATAATAAATATTCTTATATGAATTTA
1 AATTCTTAATAATAAATTTTCTTATATGAATTTA
36328600 CTAAAATCAT
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 114 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (91 bp):
AATTCTTAATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAA
TTTAATAATAATATATAATTTCATAA
Found at i:36328582 original size:47 final size:45
Alignment explanation
Indices: 36328440--36328584 Score: 136
Period size: 47 Copynumber: 3.2 Consensus size: 45
36328430 TAATTATTAT
* *
36328440 TAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAA
1 TAAATATAATTTAATAAT-ATATATAATTTTAT-AAATTCTTAATAA
* * ** *
36328487 TAAAT-T-TTCTTATATGAATTTATATAA-TTTA-AAATAATTAATAT
1 TAAATATAAT-TTA-AT-AATATATATAATTTTATAAATTCTTAATAA
36328531 TAAATATAATTTAATAATGATATATAATTTTATAAATTTCTTAATAA
1 TAAATATAATTTAATAAT-ATATATAATTTTATAAA-TTCTTAATAA
36328578 TAAATAT
1 TAAATAT
36328585 TCTTATATGA
Statistics
Matches: 77, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
43 3 0.04
44 23 0.30
45 9 0.12
46 11 0.14
47 28 0.36
48 3 0.04
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (45 bp):
TAAATATAATTTAATAATATATATAATTTTATAAATTCTTAATAA
Found at i:36334961 original size:40 final size:40
Alignment explanation
Indices: 36334670--36334954 Score: 407
Period size: 40 Copynumber: 7.2 Consensus size: 40
36334660 AACCCAAGTA
* *
36334670 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
36334709 CCTTCGGGACTTAACCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
36334749 CCTTCGGGACTTAGCCCGAATGTAGTCACTAGCACAAAT-
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
36334788 CCTTTGGGACTTAGCCCTGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36334828 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
** * *
36334868 CCTTC-GGATCTTATTCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATG
36334908 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36334948 CCTTCGG
1 CCTTCGG
36334955 ATCTTAGTCC
Statistics
Matches: 217, Mismatches: 24, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
39 49 0.23
40 164 0.76
41 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:36336360 original size:13 final size:13
Alignment explanation
Indices: 36336344--36336371 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36336334 TTTATTATTT
36336344 TTAACACAAAATA
1 TTAACACAAAATA
36336357 TTAACACAAAATA
1 TTAACACAAAATA
36336370 TT
1 TT
36336372 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:36337190 original size:29 final size:29
Alignment explanation
Indices: 36337151--36337309 Score: 151
Period size: 29 Copynumber: 5.6 Consensus size: 29
36337141 TCGTAACCGA
*
36337151 GCACTGTGTGTGCGAGATCGGTTGTTAAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * * **** *
36337180 GCACTTTGTGTGCAAGTTCCG-TAACCAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
36337208 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
36337237 GCACTGTGTGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
36337265 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
*
36337294 GCACTGCGTGTGCGAG
1 GCACTGTGTGTGCGAG
36337310 TTCCGTAACC
Statistics
Matches: 97, Mismatches: 31, Indels: 4
0.73 0.23 0.03
Matches are distributed among these distances:
28 41 0.42
29 56 0.58
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.28
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:36337277 original size:28 final size:28
Alignment explanation
Indices: 36337123--36337334 Score: 163
Period size: 28 Copynumber: 7.5 Consensus size: 28
36337113 GTGAACATAG
* *
36337123 GCACTGTGTGTGAGAGTTTCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * *****
36337151 GCACTGTGTGTGCGAGATCGGTTGTTAA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * *
36337179 GGCACTTTGTGTGCAAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
36337208 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
36337236 GGCACTGTGTGTGCGAGTTCCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
36337265 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* *
36337293 GGCACTGCGTGTGCGAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
36337322 GCACTGTGTGTGC
1 GCACTGTGTGTGC
36337335 AAGATCGGTT
Statistics
Matches: 134, Mismatches: 47, Indels: 6
0.72 0.25 0.03
Matches are distributed among these distances:
28 72 0.54
29 62 0.46
ACGTcount: A:0.18, C:0.20, G:0.34, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:36337362 original size:57 final size:57
Alignment explanation
Indices: 36337121--36337348 Score: 375
Period size: 57 Copynumber: 4.0 Consensus size: 57
36337111 AAGTGAACAT
* * * *
36337121 AGGCACTGTGTGTGAGAGTTTCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTA
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
36337178 AGGCACTTTGTGTGCAAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
36337235 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
36337292 AGGCACTGCGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
36337349 GGGAACTAAG
Statistics
Matches: 159, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 159 1.00
ACGTcount: A:0.18, C:0.19, G:0.34, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:36342338 original size:28 final size:28
Alignment explanation
Indices: 36342298--36342376 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
36342288 GCAATCAAAT
* * *
36342298 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
36342326 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
36342354 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
36342377 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:36349246 original size:21 final size:21
Alignment explanation
Indices: 36349214--36349264 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
36349204 ATTACATTAA
* *
36349214 AAATTCA-GAAAATTTTTATC
1 AAATTCATAAAAAATTTTATC
36349234 AAATTCATAAAAAATTTTATC
1 AAATTCATAAAAAATTTTATC
36349255 AAATTCATAA
1 AAATTCATAA
36349265 CGACATATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 7 0.25
21 21 0.75
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.37
Consensus pattern (21 bp):
AAATTCATAAAAAATTTTATC
Found at i:36349805 original size:5 final size:5
Alignment explanation
Indices: 36349795--36349823 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
36349785 GCAAGTAATT
36349795 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
36349824 TATATGCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:36350731 original size:18 final size:18
Alignment explanation
Indices: 36350708--36350743 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
36350698 CATAGCATCA
36350708 ATAGGCATTCAAACCAAT
1 ATAGGCATTCAAACCAAT
36350726 ATAGGCATTCAAACCAAT
1 ATAGGCATTCAAACCAAT
36350744 CTCATCTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.22
Consensus pattern (18 bp):
ATAGGCATTCAAACCAAT
Found at i:36352531 original size:19 final size:19
Alignment explanation
Indices: 36352507--36352546 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36352497 TGTGTTATCA
*
36352507 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
36352526 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
36352545 TA
1 TA
36352547 CACAATTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:36353318 original size:16 final size:18
Alignment explanation
Indices: 36353297--36353330 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
36353287 CAAATTCACC
36353297 TTATTC-AATCA-TCAAA
1 TTATTCAAATCAGTCAAA
36353313 TTATTCAAATCAGTCAAA
1 TTATTCAAATCAGTCAAA
36353331 AAAATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 5 0.31
18 5 0.31
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (18 bp):
TTATTCAAATCAGTCAAA
Found at i:36355588 original size:22 final size:22
Alignment explanation
Indices: 36355563--36355604 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
36355553 ATAGGTTACG
*
36355563 GTACTATTTTCTCATAGCTTCT
1 GTACCATTTTCTCATAGCTTCT
36355585 GTACCATTTTCTCATAGCTT
1 GTACCATTTTCTCATAGCTT
36355605 TTTTGGGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.24, G:0.10, T:0.48
Consensus pattern (22 bp):
GTACCATTTTCTCATAGCTTCT
Found at i:36357743 original size:42 final size:41
Alignment explanation
Indices: 36357679--36357833 Score: 150
Period size: 42 Copynumber: 3.7 Consensus size: 41
36357669 CTAAGTCTAT
* * * * *
36357679 GTGTAAGACCGTATCTGGGATATGGCATCAATATGGGACTTC
1 GTGTAAGACCATATCTGAGATATGGCATCGATAAGAGA-TTC
*
36357721 GTGTAAGACCATATCTGAGATATGGCATCGATAAGACATTTC
1 GTGTAAGACCATATCTGAGATATGGCATCGATAAGAGA-TTC
* * * *
36357763 GTGTAAGACAATAGCT-AGGCTATTGGCATCGATACGAGATTAC
1 GTGTAAGACCATATCTGA-GATA-TGGCATCGATAAGAGATT-C
* *
36357806 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGAGATATGGCAT
36357834 TGGCATGGTA
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 60 0.65
43 31 0.34
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (41 bp):
GTGTAAGACCATATCTGAGATATGGCATCGATAAGAGATTC
Found at i:36361955 original size:40 final size:40
Alignment explanation
Indices: 36361900--36362146 Score: 422
Period size: 40 Copynumber: 6.2 Consensus size: 40
36361890 AACCCAAGTA
*
36361900 CCTTCGGGATTTAGCCCGGATATAGCAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
36361940 CCTTCGGGATTTAGCCCGGATATAGCAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
36361980 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
36362020 CCTTTGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
36362060 CCTTCGGGATTTAGCCCGGATATAGCAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
* * *
36362100 CCTTCGGGACTTAGCCTGGATATAGTAACTAGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
36362140 CCTTCGG
1 CCTTCGG
36362147 ATCTTAGTTC
Statistics
Matches: 197, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 197 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:36362960 original size:19 final size:19
Alignment explanation
Indices: 36362908--36362963 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
36362898 ATAAGTATAA
*
36362908 GTTCAATATAAACTCACAT
1 GTTCAATATAAATTCACAT
* *
36362927 G-T-AA-CTAAATACACAT
1 GTTCAATATAAATTCACAT
36362943 GTTCAATATAAATTCACAT
1 GTTCAATATAAATTCACAT
36362962 GT
1 GT
36362964 AATCGAATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 10 0.34
17 3 0.10
18 3 0.10
19 13 0.45
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (19 bp):
GTTCAATATAAATTCACAT
Found at i:36364457 original size:28 final size:25
Alignment explanation
Indices: 36364433--36364484 Score: 68
Period size: 28 Copynumber: 2.0 Consensus size: 25
36364423 AGTACTGTGT
36364433 TAGTGGCTTTGCCACGTAATTACTGCTC
1 TAGTGGCTTTGCCACGT--TTACTG-TC
*
36364461 TGGTGGCTTTGCCACGTTTACTGT
1 TAGTGGCTTTGCCACGTTTACTGT
36364485 TATTAGTAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 1 0.04
26 6 0.26
28 16 0.70
ACGTcount: A:0.13, C:0.23, G:0.25, T:0.38
Consensus pattern (25 bp):
TAGTGGCTTTGCCACGTTTACTGTC
Found at i:36364677 original size:28 final size:28
Alignment explanation
Indices: 36364618--36364715 Score: 70
Period size: 28 Copynumber: 3.4 Consensus size: 28
36364608 ACTGCACTGT
* * * * *
36364618 ACTGATACTAAATTGGGCTTAGGCCCAC
1 ACTGTTACTGAATAGGGCTAAGGCCCAG
* *
36364646 ACTGTTACTGTATAGGGCTAAGGCCGAG
1 ACTGTTACTGAATAGGGCTAAGGCCCAG
* *
36364674 ACTGTACTATACTGAATAGGGCTCAGGCCTAG
1 ACTG---T-TACTGAATAGGGCTAAGGCCCAG
*
36364706 ACTATTACTG
1 ACTGTTACTG
36364716 CGTGCATTGT
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
28 30 0.55
29 1 0.02
31 1 0.02
32 23 0.42
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (28 bp):
ACTGTTACTGAATAGGGCTAAGGCCCAG
Found at i:36375830 original size:39 final size:39
Alignment explanation
Indices: 36375666--36375848 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 39
36375656 TTGAATGCTG
* * * * * *
36375666 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
36375706 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
36375746 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
36375786 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
36375825 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36375849 TGAACGAGGA
Statistics
Matches: 123, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 38 0.31
40 76 0.62
41 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:36375845 original size:79 final size:81
Alignment explanation
Indices: 36375667--36375848 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 81
36375657 TGAATGCTGT
* * *
36375667 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCCATT
*
36375731 GTGCGAGATACTAAAT
66 GTGCGAGATACTAAAA
* * * * **
36375747 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGG-CAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCCAT
* *
36375809 TGTGTGAGTTACTAAAA
65 TGTGCGAGATACTAAAA
*
36375826 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
36375849 TGAACGAGGA
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 38 0.44
80 42 0.49
81 6 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCCATT
GTGCGAGATACTAAAA
Found at i:36379593 original size:43 final size:42
Alignment explanation
Indices: 36379471--36379624 Score: 193
Period size: 42 Copynumber: 3.6 Consensus size: 42
36379461 TAAGTCTATG
* * * * *
36379471 TGTAAGACCATATCTGGGATATGACAACAATATGAGACTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATAAGAGATTTCA
*
36379513 TGTAAGACCATATCTGGGATATGGCATCGATAAGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATAAGAGATTTCA
* * *
36379555 TGTAAGACCATAGCT-GGACTATTGGCATCGATACGAGATTACA
1 TGTAAGACCATATCTGGGA-TA-TGGCATCGATAAGAGATTTCA
*
36379598 TGTAAGACCATATCTGGTATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
36379625 TGGTATAGTA
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
41 3 0.03
42 58 0.60
43 34 0.35
44 2 0.02
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATAAGAGATTTCA
Found at i:36385658 original size:20 final size:19
Alignment explanation
Indices: 36385617--36385665 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
36385607 AAAACTTTGG
* *
36385617 AAAAATATTAGAATACATA
1 AAAAATTTTAGAAAACATA
36385636 AAAAATTTTAGAAAACATAA
1 AAAAATTTTAGAAAACAT-A
36385656 AAAAATTTTA
1 AAAAATTTTA
36385666 AAATACAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (19 bp):
AAAAATTTTAGAAAACATA
Found at i:36397141 original size:21 final size:21
Alignment explanation
Indices: 36397116--36397160 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
36397106 ATTATTTATT
36397116 TATTTTTATATTAAATA-AATA
1 TATTTTTATA-TAAATACAATA
* *
36397137 TATTTTTTTATATATACAATA
1 TATTTTTATATAAATACAATA
36397158 TAT
1 TAT
36397161 AAATATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TATTTTTATATAAATACAATA
Found at i:36397190 original size:12 final size:12
Alignment explanation
Indices: 36397175--36397200 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36397165 ATAAAATTTG
36397175 TTATATTAATAA
1 TTATATTAATAA
36397187 TTATATTAATAA
1 TTATATTAATAA
36397199 TT
1 TT
36397201 TTAAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
TTATATTAATAA
Found at i:36397273 original size:29 final size:27
Alignment explanation
Indices: 36397220--36397296 Score: 73
Period size: 29 Copynumber: 2.7 Consensus size: 27
36397210 TTAATCAAAT
36397220 TAAAATTTTATATATAAAATTATATAAAAA
1 TAAAA-TTTATATAT--AATTATATAAAAA
* *
36397250 TAAAATTTATATATAATTAGATATTAAAT
1 TAAAATTTATATATAATT--ATATAAAAA
* *
36397279 TATAATTCATATATAATT
1 TAAAATTTATATATAATT
36397297 TTAATATTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 4 0.10
29 32 0.78
30 5 0.12
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (27 bp):
TAAAATTTATATATAATTATATAAAAA
Found at i:36398234 original size:17 final size:17
Alignment explanation
Indices: 36398214--36398255 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
36398204 TTTGAAGAGT
36398214 TTTTATTTTTTTCATAA
1 TTTTATTTTTTTCATAA
*
36398231 TTTT-TTATTTTTCATAT
1 TTTTATT-TTTTTCATAA
36398248 TTTTATTT
1 TTTTATTT
36398256 AAAATATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 2 0.09
17 18 0.82
18 2 0.09
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTTTCATAA
Found at i:36398252 original size:15 final size:17
Alignment explanation
Indices: 36398221--36398255 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
36398211 AGTTTTTATT
36398221 TTTTTCATAATTTTTTA
1 TTTTTCATAATTTTTTA
36398238 TTTTTCAT-A-TTTTTA
1 TTTTTCATAATTTTTTA
36398253 TTT
1 TTT
36398256 AAAATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 1 0.06
17 8 0.44
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCATAATTTTTTA
Found at i:36403612 original size:20 final size:20
Alignment explanation
Indices: 36403587--36403624 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36403577 GAAACATATA
36403587 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
36403607 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
36403625 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:36403866 original size:9 final size:9
Alignment explanation
Indices: 36403852--36403878 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
36403842 ACATGCAATA
36403852 TTAAAGTAT
1 TTAAAGTAT
36403861 TTAAAGTAT
1 TTAAAGTAT
36403870 TTAAAGTAT
1 TTAAAGTAT
36403879 GGTACATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (9 bp):
TTAAAGTAT
Found at i:36407337 original size:40 final size:40
Alignment explanation
Indices: 36407293--36407368 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
36407283 CGGCTAAGAA
* *
36407293 TGGCACTTAGTGTGCGGTTTGAAATAGCTTCGGCTAAATG
1 TGGCACTTAGTGTACGATTTGAAATAGCTTCGGCTAAATG
* *
36407333 TGGCACTTGGTGTACGATTTGAGATAGCTTCGGCTA
1 TGGCACTTAGTGTACGATTTGAAATAGCTTCGGCTA
36407369 TATATGCGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTACGATTTGAAATAGCTTCGGCTAAATG
Found at i:36407410 original size:28 final size:28
Alignment explanation
Indices: 36407373--36407441 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
36407363 CGGCTATATA
* * *
36407373 TGCGAAATATTGAGAATGGCACTTGGTG
1 TGCGAGATATTGAGAATGGAACTTAGTG
* *
36407401 TGCGAGATATTTAGTATGGAACTTAGTG
1 TGCGAGATATTGAGAATGGAACTTAGTG
*
36407429 TGTGAGATATTGA
1 TGCGAGATATTGA
36407442 AGATGCAACG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.29, C:0.07, G:0.30, T:0.33
Consensus pattern (28 bp):
TGCGAGATATTGAGAATGGAACTTAGTG
Found at i:36414074 original size:14 final size:15
Alignment explanation
Indices: 36414055--36414099 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
36414045 CAAAGATAAC
36414055 AAGAAAACCAAG-TA
1 AAGAAAACCAAGATA
*
36414069 AAGAAAACCAGGATA
1 AAGAAAACCAAGATA
*
36414084 AAGAAATCCCAAGATA
1 AAGAAA-ACCAAGATA
36414100 CGAGACTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 11 0.42
15 8 0.31
16 7 0.27
ACGTcount: A:0.60, C:0.16, G:0.16, T:0.09
Consensus pattern (15 bp):
AAGAAAACCAAGATA
Found at i:36417063 original size:47 final size:47
Alignment explanation
Indices: 36417012--36417234 Score: 349
Period size: 47 Copynumber: 4.7 Consensus size: 47
36417002 TTAGGATTCT
* * *
36417012 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
36417059 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36417106 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
36417153 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
36417200 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36417235 TCCCGAAGGG
Statistics
Matches: 164, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.01
47 163 0.99
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:36417087 original size:25 final size:25
Alignment explanation
Indices: 36417059--36417137 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
36417049 CTAATGGCCG
36417059 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
36417084 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
36417106 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
36417131 ATGTGAT
1 ATGTGAT
36417138 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:36417409 original size:37 final size:37
Alignment explanation
Indices: 36417353--36417431 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36417343 CCGAGCTCTA
* * *
36417353 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
36417390 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36417427 AAGAC
1 AAGAC
36417432 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.