Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 118 of 253
Found at i:37174722 original size:11 final size:11
Alignment explanation
Indices: 37174706--37174730 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37174696 TATACCTATA
37174706 TTGTAGAATTT
1 TTGTAGAATTT
37174717 TTGTAGAATTT
1 TTGTAGAATTT
37174728 TTG
1 TTG
37174731 GTATGGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (11 bp):
TTGTAGAATTT
Found at i:37176119 original size:28 final size:28
Alignment explanation
Indices: 37176056--37176209 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
37176046 TATTTAAGTC
* *
37176056 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
37176083 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
37176111 CGCGCACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
37176139 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
37176167 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
37176195 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37176210 GTACAATTTA
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.18
28 100 0.82
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:37182920 original size:11 final size:11
Alignment explanation
Indices: 37182904--37182928 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37182894 TATACCTATA
37182904 TTGTAGAATTT
1 TTGTAGAATTT
37182915 TTGTAGAATTT
1 TTGTAGAATTT
37182926 TTG
1 TTG
37182929 GTCGGGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (11 bp):
TTGTAGAATTT
Found at i:37184317 original size:28 final size:28
Alignment explanation
Indices: 37184254--37184435 Score: 321
Period size: 28 Copynumber: 6.5 Consensus size: 28
37184244 ATATTAAGTC
* *
37184254 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
37184281 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
37184309 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
37184337 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
37184365 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
37184393 CTCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
37184421 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37184436 GTACAATTTA
Statistics
Matches: 150, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
27 22 0.15
28 128 0.85
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:37184927 original size:12 final size:12
Alignment explanation
Indices: 37184910--37184935 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37184900 TGGGCATACT
37184910 TATGTATATATA
1 TATGTATATATA
37184922 TATGTATATATA
1 TATGTATATATA
37184934 TA
1 TA
37184936 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:37187102 original size:21 final size:21
Alignment explanation
Indices: 37187078--37187117 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
37187068 TCTAAACACT
37187078 TAAAGACATCATATTAAAATG
1 TAAAGACATCATATTAAAATG
*
37187099 TAAATACATCATATTAAAA
1 TAAAGACATCATATTAAAA
37187118 ATACTAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (21 bp):
TAAAGACATCATATTAAAATG
Found at i:37187270 original size:22 final size:22
Alignment explanation
Indices: 37187242--37187286 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
37187232 AATATTTATA
37187242 ATAAAATTAAAATGTATAAATT
1 ATAAAATTAAAATGTATAAATT
37187264 ATAAAATTAAAATGTATAAATT
1 ATAAAATTAAAATGTATAAATT
37187286 A
1 A
37187287 CACTAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (22 bp):
ATAAAATTAAAATGTATAAATT
Found at i:37189824 original size:29 final size:27
Alignment explanation
Indices: 37189796--37189854 Score: 86
Period size: 25 Copynumber: 2.2 Consensus size: 27
37189786 TTATATTTTA
*
37189796 CTTACTTTTCATATTTTTTATTCTA-T
1 CTTACTTTTCATAATTTTTATTCTATT
37189822 -TTACTTTTCATAATTTTTATTCTATCT
1 CTTACTTTTCATAATTTTTATTCTAT-T
37189849 CTTACT
1 CTTACT
37189855 ATGCAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 23 0.79
27 1 0.03
28 5 0.17
ACGTcount: A:0.20, C:0.17, G:0.00, T:0.63
Consensus pattern (27 bp):
CTTACTTTTCATAATTTTTATTCTATT
Found at i:37189825 original size:25 final size:25
Alignment explanation
Indices: 37189797--37189846 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
37189787 TATATTTTAC
*
37189797 TTACTTTTCATATTTTTTATTCTAT
1 TTACTTTTCATAATTTTTATTCTAT
37189822 TTACTTTTCATAATTTTTATTCTAT
1 TTACTTTTCATAATTTTTATTCTAT
37189847 CTCTTACTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.12, G:0.00, T:0.66
Consensus pattern (25 bp):
TTACTTTTCATAATTTTTATTCTAT
Found at i:37191342 original size:42 final size:42
Alignment explanation
Indices: 37191284--37191370 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
37191274 GAACTAAAAC
* *
37191284 AAACTTATCCCTATCATCTCCATTGTATCAAGGGCAAGGTCA
1 AAACTCATCCCTATCATCTCCATTGCATCAAGGGCAAGGTCA
37191326 AAACTCATCCCTATCATCTCCATTGCATCAAGGGCAAGGTCA
1 AAACTCATCCCTATCATCTCCATTGCATCAAGGGCAAGGTCA
37191368 AAA
1 AAA
37191371 AGTTGTTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (42 bp):
AAACTCATCCCTATCATCTCCATTGCATCAAGGGCAAGGTCA
Found at i:37194166 original size:21 final size:22
Alignment explanation
Indices: 37194142--37194189 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
37194132 ATAAAAAAAT
*
37194142 AAATTGTCTAT-AAAAATTAAC
1 AAATTGTCTATAAAAAATGAAC
*
37194163 AAATTGTCTCTAAAAAATGAAC
1 AAATTGTCTATAAAAAATGAAC
37194185 AAATT
1 AAATT
37194190 TGTTAACGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.31
Consensus pattern (22 bp):
AAATTGTCTATAAAAAATGAAC
Found at i:37203397 original size:24 final size:24
Alignment explanation
Indices: 37203370--37203431 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 24
37203360 ATCAAGAAGT
37203370 TCACAAAGAACCATATCAGAAAGC
1 TCACAAAGAACCATATCAGAAAGC
* ** *
37203394 TCACAAATAACC-TATTGGGAAGC
1 TCACAAAGAACCATATCAGAAAGC
* *
37203417 TCAAAAAGAGCCATA
1 TCACAAAGAACCATA
37203432 ACGGGAAGCT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
23 17 0.57
24 13 0.43
ACGTcount: A:0.47, C:0.23, G:0.15, T:0.16
Consensus pattern (24 bp):
TCACAAAGAACCATATCAGAAAGC
Found at i:37208422 original size:19 final size:19
Alignment explanation
Indices: 37208398--37208436 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
37208388 CAAACGGTTT
37208398 ACACATAGCAACTTTGGTC
1 ACACATAGCAACTTTGGTC
37208417 ACACATAGCAACTTTGGTC
1 ACACATAGCAACTTTGGTC
37208436 A
1 A
37208437 GGATACATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (19 bp):
ACACATAGCAACTTTGGTC
Found at i:37209925 original size:24 final size:23
Alignment explanation
Indices: 37209898--37209952 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
37209888 CTCAACCTAC
*
37209898 ACCAATAC-AGATATTCATAAACCA
1 ACCAATACAAGACATT-A-AAACCA
*
37209922 ACCAATTCAAGACATTAAAACCA
1 ACCAATACAAGACATTAAAACCA
37209945 AGCCAATA
1 A-CCAATA
37209953 TTAATATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 7 0.27
24 13 0.50
25 6 0.23
ACGTcount: A:0.51, C:0.25, G:0.05, T:0.18
Consensus pattern (23 bp):
ACCAATACAAGACATTAAAACCA
Found at i:37212210 original size:15 final size:17
Alignment explanation
Indices: 37212186--37212219 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
37212176 GCTAAGGACT
37212186 AAATTGAAAAG-TGATA
1 AAATTGAAAAGATGATA
37212202 AAATT-AAAAGATGATA
1 AAATTGAAAAGATGATA
37212218 AA
1 AA
37212220 TAATTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.24
Consensus pattern (17 bp):
AAATTGAAAAGATGATA
Found at i:37214481 original size:42 final size:42
Alignment explanation
Indices: 37214429--37214509 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
37214419 GACAAACGGT
* * *
37214429 CGTGTGTCTTGACCGTATGTGACACACAGCTTGGTACATCGG
1 CGTGTATCTTGACCATATGTGACACACAGCCTGGTACATCGG
* *
37214471 CGTGTATCTTGACCATGTGTGACACACGGCCTGGTACAT
1 CGTGTATCTTGACCATATGTGACACACAGCCTGGTACAT
37214510 GGGTGTGTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.20, C:0.25, G:0.27, T:0.28
Consensus pattern (42 bp):
CGTGTATCTTGACCATATGTGACACACAGCCTGGTACATCGG
Found at i:37216516 original size:48 final size:48
Alignment explanation
Indices: 37216341--37216514 Score: 251
Period size: 48 Copynumber: 3.6 Consensus size: 48
37216331 ATGAGATCTC
37216341 GTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCA
1 GTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCA
* ** *
37216389 ATGTAAGACCATGTCCGGGACATGGCATCAACGTTGATATGTGTGCCA
1 GTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCA
* * * *
37216437 GTGTAAAACCATGTTTGGGACATGGCATCGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCA
*
37216485 GTGTAAGACCATGTCTAGGG-CATGGCATCG
1 GTGTAAGACCATGT-TTGGGACATGGCATCG
37216515 GCACCGATAT
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 107 0.96
49 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCA
Found at i:37216552 original size:96 final size:96
Alignment explanation
Indices: 37216331--37216544 Score: 247
Period size: 96 Copynumber: 2.2 Consensus size: 96
37216321 ACCATGGTTA
*
37216331 ATGAGATCTCGTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCAATGTAAG
1 ATGAGATCTCGTGTAAGACCATGTTTGGGACATGGCATCGACGATGATATGTGTGCCAATGTAAG
* ***
37216396 ACCATGTCCGGGACATGGCATCAACGTTGAT
66 ACCATGTCAGGGACATGGCATCAACACCGAT
* * * * *
37216427 ATGTG-TGC-CAGTGTAAAACCATGTTTGGGACATGGCATCGGCGATGATATGTGTGCTAGTGTA
1 ATGAGAT-CTC-GTGTAAGACCATGTTTGGGACATGGCATCGACGATGATATGTGTGCCAATGTA
**
37216490 AGACCATGTCTAGGG-CATGGCATCGGCACCGAT
64 AGACCATGTC-AGGGACATGGCATCAACACCGAT
*
37216523 ATGAGA-CTTCGTATAAGACCAT
1 ATGAGATC-TCGTGTAAGACCAT
37216545 ATCTGGGATA
Statistics
Matches: 97, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
95 3 0.03
96 90 0.93
97 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (96 bp):
ATGAGATCTCGTGTAAGACCATGTTTGGGACATGGCATCGACGATGATATGTGTGCCAATGTAAG
ACCATGTCAGGGACATGGCATCAACACCGAT
Found at i:37222511 original size:13 final size:13
Alignment explanation
Indices: 37222493--37222520 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37222483 CAATCTCTTT
37222493 TGGGTATTCTATA
1 TGGGTATTCTATA
37222506 TGGGTATTCTATA
1 TGGGTATTCTATA
37222519 TG
1 TG
37222521 TACTCTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
TGGGTATTCTATA
Found at i:37223997 original size:28 final size:27
Alignment explanation
Indices: 37223950--37224054 Score: 106
Period size: 27 Copynumber: 3.8 Consensus size: 27
37223940 TGGCAGAACT
* *
37223950 GATAATGTGACAGAGTCACCAGATACA
1 GATAATGTGGCAGAGCCACCAGATACA
*
37223977 GATAATCGTGGCAGAACCACCAGA-ACA
1 GATAAT-GTGGCAGAGCCACCAGATACA
* *
37224004 GATATATGTGGCAGAGCGACCAGAT-TA
1 GATA-ATGTGGCAGAGCCACCAGATACA
*
37224031 GATAATTTGTGGCATAGCCACCAG
1 GATAA--TGTGGCAGAGCCACCAG
37224055 GACACTTCCT
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
26 1 0.02
27 33 0.51
28 31 0.48
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
GATAATGTGGCAGAGCCACCAGATACA
Found at i:37224026 original size:55 final size:54
Alignment explanation
Indices: 37223943--37224054 Score: 129
Period size: 55 Copynumber: 2.1 Consensus size: 54
37223933 GCATGGCTGG
*
37223943 CAGAACTGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAACCAC
1 CAGAACAGATAATGTGACAGAGTCACCAGAT-CAGATAATTCGTGGCAGAACCAC
* * * * *
37223997 CAGAACAGATATATGTGGCAGAG-CGACCAGATTAGATAATTTGTGGCATAGCCAC
1 CAGAACAGATA-ATGTGACAGAGTC-ACCAGATCAGATAATTCGTGGCAGAACCAC
37224052 CAG
1 CAG
37224055 GACACTTCCT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 17 0.35
55 32 0.65
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (54 bp):
CAGAACAGATAATGTGACAGAGTCACCAGATCAGATAATTCGTGGCAGAACCAC
Found at i:37225499 original size:24 final size:24
Alignment explanation
Indices: 37225472--37225518 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
37225462 TTAGATTTCC
**
37225472 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
37225496 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
37225519 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:37228932 original size:44 final size:44
Alignment explanation
Indices: 37228882--37228965 Score: 168
Period size: 44 Copynumber: 1.9 Consensus size: 44
37228872 CGGCCCTCAG
37228882 TGCTGACACCACATTAGACAAATAATCCCTTCGCTCACCTTCAA
1 TGCTGACACCACATTAGACAAATAATCCCTTCGCTCACCTTCAA
37228926 TGCTGACACCACATTAGACAAATAATCCCTTCGCTCACCT
1 TGCTGACACCACATTAGACAAATAATCCCTTCGCTCACCT
37228966 ATCATCATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.31, C:0.35, G:0.10, T:0.25
Consensus pattern (44 bp):
TGCTGACACCACATTAGACAAATAATCCCTTCGCTCACCTTCAA
Found at i:37231392 original size:37 final size:37
Alignment explanation
Indices: 37231334--37231515 Score: 319
Period size: 37 Copynumber: 4.9 Consensus size: 37
37231324 GCTCAGACGA
* * * *
37231334 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
37231371 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
37231408 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
37231445 AATCTCCATACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
37231482 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
37231516 ATATATTTCC
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:37231728 original size:46 final size:46
Alignment explanation
Indices: 37231660--37231930 Score: 138
Period size: 47 Copynumber: 5.8 Consensus size: 46
37231650 TATATATACA
* * * *
37231660 CATCTCGTACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* *
37231706 CATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT-
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * * *
37231751 -AT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATG
1 CATCTCA--TACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
37231801 CATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
37231847 GCATGT--T-CACATTCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 -CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
37231894 GCATGT--T-CACATTCATCACATTGGCCATTCGGCCTTA
1 -CATCTCATACACA-TC-TCACATTAGCCATTCGGCCTTA
37231931 TCACGCATAT
Statistics
Matches: 201, Mismatches: 14, Indels: 19
0.86 0.06 0.08
Matches are distributed among these distances:
43 3 0.01
44 2 0.01
45 5 0.02
46 40 0.20
47 140 0.70
48 2 0.01
49 6 0.03
51 2 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.11, T:0.33
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:37231786 original size:47 final size:47
Alignment explanation
Indices: 37231724--37232257 Score: 735
Period size: 47 Copynumber: 11.1 Consensus size: 47
37231714 ACACATTTCG
* * * **
37231724 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
37231771 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37231818 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37231865 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
37231912 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
37231965 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
37232012 CATTGGTCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
* *
37232063 CATTGGCCATTCAGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
37232110 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
37232157 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
37232208 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37232255 CAT
1 CAT
37232258 AAAATCCTAA
Statistics
Matches: 437, Mismatches: 36, Indels: 28
0.87 0.07 0.06
Matches are distributed among these distances:
47 307 0.70
49 1 0.00
51 87 0.20
53 42 0.10
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:37232168 original size:145 final size:144
Alignment explanation
Indices: 37231724--37232257 Score: 792
Period size: 145 Copynumber: 3.7 Consensus size: 144
37231714 ACACATTTCG
* **
37231724 CATTAGCCATTCGGCCTTA-C-CACATATAT-TCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGC
* * * *
37231786 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
66 CTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
37231851 GTTCACATTCATCA
131 GTTCACATTCATCA
***
37231865 CATTGGCCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGC
* ** * *
37231927 CTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
66 CTTATCA--C----ACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACAT
37231992 ACGCATGTTCACATTCATCA
125 ACGCATGTTCACATTCATCA
* *
37232012 CATTGGTCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCAG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGGCCATTCGG
*
37232077 CCTTATCACACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCA
65 CCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCA
37232142 TGTTCACATTCATCA
130 TGTTCACATTCATCA
37232157 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGGCCATTCGG
37232222 CCTTATCACACATACGCATGTTCACATCCATCACAT
65 CCTTATCACACATACGCATGTTCACATCCATCACAT
37232258 AAAATCCTAA
Statistics
Matches: 359, Mismatches: 21, Indels: 22
0.89 0.05 0.05
Matches are distributed among these distances:
141 53 0.15
142 1 0.00
143 7 0.02
144 1 0.00
145 163 0.45
147 98 0.27
149 1 0.00
151 35 0.10
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (144 bp):
CATTGGCCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
GTTCACATTCATCA
Found at i:37236090 original size:27 final size:26
Alignment explanation
Indices: 37236051--37236163 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
37236041 AGCATGGCTG
* * *
37236051 CCAGAACTGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
37236077 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
37236105 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
37236132 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
37236160 CCAG
1 CCAG
37236164 TACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 6 0.08
27 37 0.49
28 32 0.43
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:37236134 original size:55 final size:54
Alignment explanation
Indices: 37236051--37236163 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
37236041 AGCATGGCTG
* *
37236051 CCAGAACTGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAACCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAACCA
* * * *
37236105 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAACCA
37236160 CCAG
1 CCAG
37236164 TACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 18 0.35
55 33 0.65
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAACCA
Found at i:37241007 original size:20 final size:20
Alignment explanation
Indices: 37240978--37241018 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
37240968 AGTGTTAGTT
37240978 TTCAACAAGTTTGATAGAGA
1 TTCAACAAGTTTGATAGAGA
*
37240998 TTCAATAAGTTTGATAGAGA
1 TTCAACAAGTTTGATAGAGA
37241018 T
1 T
37241019 CCATGGTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (20 bp):
TTCAACAAGTTTGATAGAGA
Found at i:37255954 original size:15 final size:15
Alignment explanation
Indices: 37255934--37255964 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37255924 AAACCTATAA
*
37255934 AAATTAAATTAAACT
1 AAATTAAATAAAACT
37255949 AAATTAAATAAAACT
1 AAATTAAATAAAACT
37255964 A
1 A
37255965 CTAAGTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATTAAATAAAACT
Found at i:37261137 original size:18 final size:18
Alignment explanation
Indices: 37261107--37261162 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
37261097 AATGATCATC
*
37261107 ATTTCAATCATCAAATAT
1 ATTTAAATCATCAAATAT
*
37261125 ATTTAAATGATC--ATA-
1 ATTTAAATCATCAAATAT
*
37261140 ATTTCAATCATCAAATAT
1 ATTTAAATCATCAAATAT
37261158 ATTTA
1 ATTTA
37261163 CACAAGAATC
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 10 0.33
16 3 0.10
17 3 0.10
18 14 0.47
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.41
Consensus pattern (18 bp):
ATTTAAATCATCAAATAT
Found at i:37261138 original size:33 final size:33
Alignment explanation
Indices: 37261091--37261162 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
37261081 TTCTTTTTAC
* *
37261091 TATTCAAATGATCATCATTTCAATCATCAAATA
1 TATTTAAATGATCATAATTTCAATCATCAAATA
37261124 TATTTAAATGATCATAATTTCAATCATCAAATA
1 TATTTAAATGATCATAATTTCAATCATCAAATA
37261157 TATTTA
1 TATTTA
37261163 CACAAGAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (33 bp):
TATTTAAATGATCATAATTTCAATCATCAAATA
Found at i:37261152 original size:15 final size:15
Alignment explanation
Indices: 37261101--37261152 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
37261091 TATTCAAATG
*
37261101 ATCATCATTTCAATC
1 ATCATAATTTCAATC
* *
37261116 ATCAAATATATTTAAATG
1 ATC--ATA-ATTTCAATC
37261134 ATCATAATTTCAATC
1 ATCATAATTTCAATC
37261149 ATCA
1 ATCA
37261153 AATATATTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 14 0.48
16 3 0.10
17 2 0.07
18 10 0.34
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.38
Consensus pattern (15 bp):
ATCATAATTTCAATC
Found at i:37262840 original size:56 final size:56
Alignment explanation
Indices: 37262780--37262927 Score: 233
Period size: 56 Copynumber: 2.6 Consensus size: 56
37262770 TCTCATATAG
**
37262780 GGTCTTACTCATACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* * * *
37262836 GGTCTTACACGCACACATATATCGAAATCACATATCGATGCCAATGTATTAAATGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
*
37262892 GGTCTTACTCGCACACATATATCGGAATCAGATATC
1 GGTCTTACTCGCACACATATATCGGAATCACATATC
37262928 ACAAGTTGGA
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 83 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:37264591 original size:48 final size:50
Alignment explanation
Indices: 37264425--37264791 Score: 185
Period size: 46 Copynumber: 7.8 Consensus size: 50
37264415 AGGGTATAAT
** * * * * *
37264425 GCCGATGCCATGTTGCAGACATGGTTTTACACTGGCTCATC-CAA-C-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCGAAATCGAG
* * *
37264472 GTCAATGCCATGTCCCAGACATGGTCTTACATTGAC-CATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCGAAATCGAG
* * * * * *
37264521 GCCGATGTCATGTCCCAAACATGGTCTTACACTGACACCTCTATA-C-AT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCGAAATCGAG
* *
37264569 GCTGATGCCATGTCCCAGACATGGTTTTACACTGACACATC----TCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCGAAATCG-AG
* * *
37264615 GCCAATG-CAAGTCCCAGACAT-GTCTTACACTGGCTTACATC----TCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCGAAATCGAG
* * * ** * *
37264661 GCCAATG-CATGTCCCAGACAT-GTCTTACACT-AGC-CCTTG-TCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACATCGAAATCGAG
* * * *
37264707 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TC-ATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCGA-AATCGAG
* * *
37264755 GCCAATG-TATGTCCCAGACAT-GTCTTACACTGGCACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACA
37264792 CAAATAACCC
Statistics
Matches: 252, Mismatches: 47, Indels: 42
0.74 0.14 0.12
Matches are distributed among these distances:
43 2 0.01
44 11 0.04
45 15 0.06
46 70 0.28
47 59 0.23
48 55 0.22
49 35 0.14
50 5 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCGAAATCGAG
Found at i:37264665 original size:46 final size:45
Alignment explanation
Indices: 37264577--37264788 Score: 198
Period size: 46 Copynumber: 4.6 Consensus size: 45
37264567 ATGCTGATGC
* * *
37264577 CATGTCCCAGACATGGTTTTACACTGAC-ACATCTCGTA-GCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTCG-AGGCCAATG
*
37264622 CAAGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGCCAATG
* * * ** *
37264668 CATGTCCCAGACATGTCTTACACTAGCCCTT-GTCTCAATACCGATG
1 CATGTCCCAGACATGTCTTACACT-G-GCTTCATCTCGAGGCCAATG
* *
37264714 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAGGCCAATG
*
37264762 TATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
37264789 ACACAAATAA
Statistics
Matches: 137, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 62 0.45
47 30 0.22
48 19 0.14
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGCCAATG
Found at i:37273504 original size:20 final size:20
Alignment explanation
Indices: 37273481--37273523 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
37273471 CCTATTCAAA
* *
37273481 TGGTTTACACATAGCAATTT
1 TGGTTCACACATAGCAACTT
37273501 TGG-TCACACATAGCAACTT
1 TGGTTCACACATAGCAACTT
37273520 TGGT
1 TGGT
37273524 CAGGATACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (20 bp):
TGGTTCACACATAGCAACTT
Found at i:37273511 original size:19 final size:19
Alignment explanation
Indices: 37273487--37273525 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
37273477 CAAATGGTTT
*
37273487 ACACATAGCAATTTTGGTC
1 ACACATAGCAACTTTGGTC
37273506 ACACATAGCAACTTTGGTC
1 ACACATAGCAACTTTGGTC
37273525 A
1 A
37273526 GGATACATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (19 bp):
ACACATAGCAACTTTGGTC
Found at i:37281980 original size:48 final size:48
Alignment explanation
Indices: 37281806--37281979 Score: 267
Period size: 48 Copynumber: 3.6 Consensus size: 48
37281796 ATGAGATCCT
*
37281806 GTGTAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCA
* *
37281854 ATGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCA
* ** * *
37281902 GTGTAAAACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCA
*
37281950 GTGTAAGACCATGTCTGGGGCATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
37281980 GCACCGATAT
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 114 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCA
Found at i:37282009 original size:96 final size:96
Alignment explanation
Indices: 37281809--37282065 Score: 235
Period size: 96 Copynumber: 2.7 Consensus size: 96
37281799 AGATCCTGTG
* *
37281809 TAAGACCATGTTTGGGACATGGCATCGACGTTGATATGTGTGCCAATGTAAGACCATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCCAATGTAAGACCATGTCTGGGA
*** * *
37281874 CATGGCATCAACGTTGATATGTGTGCCAGTG
66 CATGGCATCAACACCGATATGAGTGCCAGTA
* ** * * *
37281905 TAAAACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCTAGTGTAAGACCATGTCTGGGG
1 TAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCCAATGTAAGACCATGTCTGGGA
** *
37281970 CATGGCATCGGCACCGATATGAGACT-TC-GTA
66 CATGGCATCAACACCGATATGAG--TGCCAGTA
* * ** *
37282001 TAAGACCATATCTGGGATATGGTGTCGAC-ATG---TG-GAT-CC-ATGTAAGACCATGTTTGGG
1 TAAGACCATGTCTGGGACATGGCATCGACGATGATATGTG-TGCCAATGTAAGACCATGTCTGGG
37282059 ACATGGC
65 ACATGGC
37282066 TATGGTACTT
Statistics
Matches: 131, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
90 23 0.18
91 2 0.02
92 3 0.02
95 3 0.02
96 98 0.75
97 1 0.01
98 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (96 bp):
TAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCCAATGTAAGACCATGTCTGGGA
CATGGCATCAACACCGATATGAGTGCCAGTA
Found at i:37285075 original size:39 final size:40
Alignment explanation
Indices: 37285030--37285254 Score: 215
Period size: 40 Copynumber: 5.7 Consensus size: 40
37285020 GCTCCTCGTT
* * * * *
37285030 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
37285070 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
37285109 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * * *
37285149 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCA
** * * * *
37285189 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
37285230 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37285255 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 37 0.24
40 104 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:37285263 original size:41 final size:41
Alignment explanation
Indices: 37285186--37285263 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37285176 CTTGTATCTC
* * *
37285186 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37285227 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37285264 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37292614 original size:39 final size:40
Alignment explanation
Indices: 37292565--37292789 Score: 215
Period size: 40 Copynumber: 5.7 Consensus size: 40
37292555 GCTCCTCGTT
* * * * *
37292565 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
37292605 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
37292644 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * * *
37292684 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCA
** * * * *
37292724 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
37292765 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37292790 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 37 0.24
40 104 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:37292798 original size:41 final size:41
Alignment explanation
Indices: 37292721--37292798 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37292711 CTTGTATCTC
* * *
37292721 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37292762 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37292799 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37297277 original size:11 final size:11
Alignment explanation
Indices: 37297261--37297288 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
37297251 TTATGCCATA
37297261 AATATTAAAAT
1 AATATTAAAAT
37297272 AATATTAAAAT
1 AATATTAAAAT
37297283 AATATT
1 AATATT
37297289 TTTACCTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATTAAAAT
Found at i:37299592 original size:49 final size:49
Alignment explanation
Indices: 37299426--37299658 Score: 286
Period size: 49 Copynumber: 4.7 Consensus size: 49
37299416 TGAGGTTGCA
* * * *
37299426 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-T-TGGTCACG
* * * **
37299477 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT-GGTCACG
*
37299527 TGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
* ** *
37299576 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATAATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
* * *
37299625 TGTGTAGTACTATGTGGAGGCTACTATGCGTACC
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
37299659 AGGTAGCTTT
Statistics
Matches: 156, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 80 0.51
50 43 0.28
51 33 0.21
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
Found at i:37299602 original size:99 final size:100
Alignment explanation
Indices: 37299424--37299658 Score: 339
Period size: 99 Copynumber: 2.4 Consensus size: 100
37299414 TGTGAGGTTG
37299424 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
**
37299489 AGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
66 AGTGCAGGCTACTACGTGTATCAGATAATT-GGTCA
* * * * * *
37299525 CGTGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATAA-T-TGGTCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
**
37299588 AGTGCAGGCTACTACGTGTATTGGATAATTGGTCA
66 AGTGCAGGCTACTACGTGTATCAGATAATTGGTCA
* *
37299623 CATGTGTAGTACTATGTGGAGGCTACTATGCGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
37299659 AGGTAGCTTT
Statistics
Matches: 119, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
98 36 0.30
99 45 0.38
100 1 0.01
101 37 0.31
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (100 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
AGTGCAGGCTACTACGTGTATCAGATAATTGGTCA
Found at i:37301622 original size:13 final size:13
Alignment explanation
Indices: 37301604--37301631 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37301594 CAATCTCTTT
37301604 TGGGTATTCTATA
1 TGGGTATTCTATA
37301617 TGGGTATTCTATA
1 TGGGTATTCTATA
37301630 TG
1 TG
37301632 TACTGTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
TGGGTATTCTATA
Found at i:37305467 original size:19 final size:19
Alignment explanation
Indices: 37305440--37305477 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
37305430 TGTCATCAAG
*
37305440 AATTCATAGCCATAACTTA
1 AATTCATAGACATAACTTA
*
37305459 AATTTATAGACATAACTTA
1 AATTCATAGACATAACTTA
37305478 CACATTTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (19 bp):
AATTCATAGACATAACTTA
Found at i:37308408 original size:30 final size:31
Alignment explanation
Indices: 37308374--37308470 Score: 92
Period size: 30 Copynumber: 3.2 Consensus size: 31
37308364 AGCTCACTCC
37308374 TAGCTC-ACTTTCAACTTACGAGCTAAACCT
1 TAGCTCAACTTTCAACTTACGAGCTAAACCT
* * * *
37308404 TAGCTCAAC-TTCAACTTAGGAGTTTAATCT
1 TAGCTCAACTTTCAACTTACGAGCTAAACCT
* * * * *
37308434 CAGCTCAACTTT-AGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTCAACTTACGAGCTAAACCT
37308464 TAGCTCA
1 TAGCTCA
37308471 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
30 48 0.92
31 4 0.08
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (31 bp):
TAGCTCAACTTTCAACTTACGAGCTAAACCT
Found at i:37310165 original size:13 final size:13
Alignment explanation
Indices: 37310147--37310195 Score: 64
Period size: 12 Copynumber: 3.6 Consensus size: 13
37310137 ACAACAAGTC
37310147 AAAAAAAATTC-A
1 AAAAAAAATTCAA
37310159 AAAAAAAATTCAA
1 AAAAAAAATTCAA
37310172 AAAAAAAATTTCGAA
1 AAAAAAAA-TTC-AA
37310187 AAGAAAAAA
1 AA-AAAAAA
37310196 AAATCTGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 11 0.33
13 9 0.27
14 3 0.09
15 4 0.12
16 6 0.18
ACGTcount: A:0.76, C:0.06, G:0.04, T:0.14
Consensus pattern (13 bp):
AAAAAAAATTCAA
Found at i:37310205 original size:18 final size:18
Alignment explanation
Indices: 37310170--37310211 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
37310160 AAAAAAATTC
*
37310170 AAAAAAAAAATTTCGAAA
1 AAAAAAAAAATCTCGAAA
37310188 AGAAAAAAAAATCT-GAAA
1 A-AAAAAAAAATCTCGAAA
37310206 AAAAAA
1 AAAAAA
37310212 CTATTTAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 5 0.23
18 6 0.27
19 11 0.50
ACGTcount: A:0.76, C:0.05, G:0.07, T:0.12
Consensus pattern (18 bp):
AAAAAAAAAATCTCGAAA
Found at i:37311103 original size:9 final size:10
Alignment explanation
Indices: 37311096--37311152 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
37311086 AAGAGAAAAC
37311096 AAAGAAAAGA
1 AAAGAAAAGA
37311106 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
37311118 AAAGAAGA-A
1 AAAGAAAAGA
37311127 AAAGAAAATGA
1 AAAGAAAA-GA
37311138 AATA-AAAAGA
1 AA-AGAAAAGA
37311148 AAAGA
1 AAAGA
37311153 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:37311119 original size:21 final size:20
Alignment explanation
Indices: 37311085--37311152 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
37311075 ACATTCTTGT
37311085 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
37311106 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
* *
37311127 AAAGAAAATGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
37311148 AAAGA
1 AAAGA
37311153 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.20
21 27 0.68
22 5 0.12
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:37311120 original size:6 final size:5
Alignment explanation
Indices: 37311096--37311152 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
37311086 AAGAGAAAAC
*
37311096 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
37311143 AAAGA AAAGA
1 AAAGA AAAGA
37311153 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:37311127 original size:15 final size:14
Alignment explanation
Indices: 37311096--37311152 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
37311086 AAGAGAAAAC
37311096 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
37311112 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
37311127 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
37311143 AAAGAAAAGA
1 AAAGAAAAGA
37311153 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:37311229 original size:12 final size:12
Alignment explanation
Indices: 37311221--37311245 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37311211 TTTGAAAAGA
37311221 AAAAAGAAAATG
1 AAAAAGAAAATG
37311233 AAAAAGAAAATG
1 AAAAAGAAAATG
37311245 A
1 A
37311246 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:37311255 original size:30 final size:31
Alignment explanation
Indices: 37311221--37311302 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
37311211 TTTGAAAAGA
*
37311221 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
37311251 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
37311281 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
37311303 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:37313507 original size:30 final size:30
Alignment explanation
Indices: 37313412--37313508 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
37313402 AGCTCACTCC
*
37313412 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAACCT
* * * * *
37313442 TAGCTCAACTTTAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * *
37313472 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
37313502 TAGCTCA
1 TAGCTCA
37313509 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
30 47 0.90
31 5 0.10
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:37316464 original size:24 final size:23
Alignment explanation
Indices: 37316408--37316464 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 23
37316398 GCATGTAAAT
*
37316408 ATGT-TAAAT-TGAATGTTATGA
1 ATGTGTAAATGTGAATGTTATAA
* *
37316429 TTGTATACAATGTGAATGTTATAA
1 ATGTGTA-AATGTGAATGTTATAA
37316453 ATGTGTGAAATG
1 ATGTGT-AAATG
37316465 ATTACATGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
21 3 0.11
22 2 0.07
23 3 0.11
24 19 0.68
25 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.21, T:0.40
Consensus pattern (23 bp):
ATGTGTAAATGTGAATGTTATAA
Found at i:37316877 original size:61 final size:61
Alignment explanation
Indices: 37316733--37316878 Score: 220
Period size: 61 Copynumber: 2.4 Consensus size: 61
37316723 TGTCATAAAA
* *
37316733 AGGATTTAGCCTGGACTGGTAATCCTGACTAAGCTCTATTGAGTAAATATATATTGGAGAG
1 AGGATTTAGCCTGGACTGGTAATCCCGACTAAGCTCTATTAAGTAAATATATATTGGAGAG
* * * *
37316794 AGGATTTAACCTAGACTAGTAATCCCGACTAAGCTCTATTAAGTAAATATATATTGGAGAT
1 AGGATTTAGCCTGGACTGGTAATCCCGACTAAGCTCTATTAAGTAAATATATATTGGAGAG
* *
37316855 AGGTTTTAGCCTGGATTGGTAATC
1 AGGATTTAGCCTGGACTGGTAATC
37316879 ATGTTGTATA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 74 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (61 bp):
AGGATTTAGCCTGGACTGGTAATCCCGACTAAGCTCTATTAAGTAAATATATATTGGAGAG
Found at i:37317107 original size:16 final size:15
Alignment explanation
Indices: 37317086--37317131 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
37317076 TCTGTCTAAA
37317086 ATACATGAAAATGATG
1 ATACATGAAAAT-ATG
*
37317102 ATACATGATAAT-TG
1 ATACATGAAAATATG
*
37317116 ATATATGAAAATATG
1 ATACATGAAAATATG
37317131 A
1 A
37317132 AATGATGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
14 12 0.46
15 3 0.12
16 11 0.42
ACGTcount: A:0.50, C:0.04, G:0.15, T:0.30
Consensus pattern (15 bp):
ATACATGAAAATATG
Found at i:37322063 original size:69 final size:69
Alignment explanation
Indices: 37321978--37322112 Score: 216
Period size: 69 Copynumber: 2.0 Consensus size: 69
37321968 TCAATGACAC
* * * *
37321978 TGAGAAAAGCACGACACACCAATGAGGCATCGATGGAAATTGATGTCGACCTCTTTCACAATGAA
1 TGAGAAAAGCACGACACACCAATGAGGCATCGATAGAAATTGATGTCAACCACTTCCACAATGAA
37322043 GCAG
66 GCAG
* *
37322047 TGAGAAAAGCATGACACACCAATGAGGCATCGATAGAAATTGATGTTAACCACTTCCACAATGAA
1 TGAGAAAAGCACGACACACCAATGAGGCATCGATAGAAATTGATGTCAACCACTTCCACAATGAA
37322112 G
66 G
37322113 TAGTTATGCA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (69 bp):
TGAGAAAAGCACGACACACCAATGAGGCATCGATAGAAATTGATGTCAACCACTTCCACAATGAA
GCAG
Found at i:37326084 original size:29 final size:29
Alignment explanation
Indices: 37326044--37326102 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
37326034 TTGTGGAAGA
* *
37326044 GGTGGAGAACTTGTTCGTTGAGAGTTCGT
1 GGTGGAGAACTTGTTCCTTGAGAATTCGT
* *
37326073 GGTGTAGAACTTGTTCCTTGTGAATTCGT
1 GGTGGAGAACTTGTTCCTTGAGAATTCGT
37326102 G
1 G
37326103 TCAAGGTGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.17, C:0.12, G:0.34, T:0.37
Consensus pattern (29 bp):
GGTGGAGAACTTGTTCCTTGAGAATTCGT
Found at i:37326220 original size:24 final size:24
Alignment explanation
Indices: 37326193--37326244 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37326183 TTTCTAGAAG
* * *
37326193 ATTTAGCATTTATTAGTATAATAT
1 ATTTAACAATTATTAGCATAATAT
37326217 ATTTAACAATTATTAGCATAATAT
1 ATTTAACAATTATTAGCATAATAT
37326241 ATTT
1 ATTT
37326245 GACATTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (24 bp):
ATTTAACAATTATTAGCATAATAT
Found at i:37326255 original size:24 final size:23
Alignment explanation
Indices: 37326193--37326256 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
37326183 TTTCTAGAAG
* *
37326193 ATTTAGCATTTATTAGTATAATAT
1 ATTTAACA-TTATTAGCATAATAT
37326217 ATTTAACAATTATTAGCATAATAT
1 ATTTAAC-ATTATTAGCATAATAT
*
37326241 ATTTGACATTAATTAG
1 ATTTAACATT-ATTAG
37326257 AATTATGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 3 0.09
24 31 0.89
25 1 0.03
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.45
Consensus pattern (23 bp):
ATTTAACATTATTAGCATAATAT
Found at i:37327022 original size:13 final size:13
Alignment explanation
Indices: 37327004--37327037 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
37326994 GGTCACACGT
37327004 CCATGTCCCGTGG
1 CCATGTCCCGTGG
37327017 CCATGTCCCGTGG
1 CCATGTCCCGTGG
37327030 CCATGTCC
1 CCATGTCC
37327038 TTCACATGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.09, C:0.41, G:0.26, T:0.24
Consensus pattern (13 bp):
CCATGTCCCGTGG
Found at i:37334002 original size:32 final size:32
Alignment explanation
Indices: 37333941--37334024 Score: 82
Period size: 32 Copynumber: 2.6 Consensus size: 32
37333931 ACTAAGTGTG
**
37333941 TATATATGTGTAGTTGGATAAAGTTGAATGTC
1 TATATATGTGTAGTTGGATAAAGCCGAATGTC
*
37333973 TATATATGTGT-GATTGGATATAA-CCGAATGTG
1 TATATATGTGTAG-TTGGATA-AAGCCGAATGTC
* * *
37334005 TATCTAGGTGTAGTTTGATA
1 TATATATGTGTAGTTGGATA
37334025 TACCCGATTG
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
31 1 0.02
32 39 0.91
33 3 0.07
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (32 bp):
TATATATGTGTAGTTGGATAAAGCCGAATGTC
Found at i:37334252 original size:27 final size:26
Alignment explanation
Indices: 37334220--37334312 Score: 96
Period size: 27 Copynumber: 3.5 Consensus size: 26
37334210 GTTGGATTTA
*
37334220 AGCACTATGTGTGTGAATTAATTTCTG
1 AGCACTAAGTGTGTGAATTAATTT-TG
* * *** *
37334247 AGCACTAAGTGTGCGAGTTGGGTTTA
1 AGCACTAAGTGTGTGAATTAATTTTG
*
37334273 AGCACTATGTGTGTGAATTAATTTTTG
1 AGCACTAAGTGTGTGAATTAA-TTTTG
37334300 AGCACTAAGTGTG
1 AGCACTAAGTGTG
37334313 CAAAATCAGT
Statistics
Matches: 50, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
26 17 0.34
27 33 0.66
ACGTcount: A:0.26, C:0.11, G:0.27, T:0.37
Consensus pattern (26 bp):
AGCACTAAGTGTGTGAATTAATTTTG
Found at i:37334284 original size:26 final size:26
Alignment explanation
Indices: 37334168--37334285 Score: 85
Period size: 27 Copynumber: 4.5 Consensus size: 26
37334158 TTTGAGGGAT
* * * *
37334168 GCACTAAGTGTGCGAATTTGATACTGA
1 GCACTAAGTGTGCGAGTTGGAT-TTAA
* *
37334195 GAACTAAGTGTACGAGTTGGATTTAA
1 GCACTAAGTGTGCGAGTTGGATTTAA
* * * * *
37334221 GCACTATGTGTGTGAATT-AATTTCTGA
1 GCACTAAGTGTGCGAGTTGGA-TT-TAA
*
37334248 GCACTAAGTGTGCGAGTTGGGTTTAA
1 GCACTAAGTGTGCGAGTTGGATTTAA
*
37334274 GCACTATGTGTG
1 GCACTAAGTGTG
37334286 TGAATTAATT
Statistics
Matches: 68, Mismatches: 20, Indels: 7
0.72 0.21 0.07
Matches are distributed among these distances:
25 1 0.01
26 30 0.44
27 37 0.54
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (26 bp):
GCACTAAGTGTGCGAGTTGGATTTAA
Found at i:37334312 original size:53 final size:53
Alignment explanation
Indices: 37334191--37334313 Score: 210
Period size: 53 Copynumber: 2.3 Consensus size: 53
37334181 GAATTTGATA
* *
37334191 CTGAGAACTAAGTGTACGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTT
1 CTGAGCACTAAGTGTGCGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTT
*
37334244 CTGAGCACTAAGTGTGCGAGTTGGGTTTAAGCACTATGTGTGTGAATTAATTT
1 CTGAGCACTAAGTGTGCGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTT
*
37334297 TTGAGCACTAAGTGTGC
1 CTGAGCACTAAGTGTGC
37334314 AAAATCAGTT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 66 1.00
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (53 bp):
CTGAGCACTAAGTGTGCGAGTTGGATTTAAGCACTATGTGTGTGAATTAATTT
Found at i:37343750 original size:20 final size:20
Alignment explanation
Indices: 37343725--37343762 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37343715 GTCACATATA
37343725 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
37343745 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
37343763 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:37347116 original size:24 final size:23
Alignment explanation
Indices: 37347063--37347112 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
37347053 TTTGTTTATT
*
37347063 ATTAAAATATTTTAAATAATGATA
1 ATTAATATATTTTAAATAA-GATA
37347087 ATTAATATATTTTAAATCAA-ATA
1 ATTAATATATTTTAAAT-AAGATA
37347110 ATT
1 ATT
37347113 TAATCTATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 6 0.25
24 16 0.67
25 2 0.08
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (23 bp):
ATTAATATATTTTAAATAAGATA
Found at i:37350390 original size:20 final size:21
Alignment explanation
Indices: 37350350--37350396 Score: 58
Period size: 24 Copynumber: 2.1 Consensus size: 21
37350340 GGGACTGGAT
37350350 AAAATAAATTTTATTAATTAA
1 AAAATAAATTTTATTAATTAA
*
37350371 AAAATAATTTTTTTATTTAATTAA
1 AAAATAA--ATTTTA-TTAATTAA
37350395 AA
1 AA
37350397 GAGGTTTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
23 5 0.23
24 10 0.45
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
AAAATAAATTTTATTAATTAA
Found at i:37350776 original size:28 final size:28
Alignment explanation
Indices: 37350716--37350800 Score: 73
Period size: 31 Copynumber: 2.9 Consensus size: 28
37350706 TAAAAGTTAT
** *
37350716 AAAAAATATTAAATTTTAATAGAAAATA-
1 AAAAAATATTAAAAATT-ATAAAAAATAG
*
37350744 TAAAAATATTAAAAATTATAAAAAATAAG
1 AAAAAATATTAAAAATTATAAAAAAT-AG
**
37350773 AAAAAATAAGAAAAAAATTATAAAAAAT
1 AAAAAAT-A-TTAAAAATTATAAAAAAT
37350801 TATTAAGTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
27 8 0.17
28 15 0.33
29 6 0.13
30 1 0.02
31 16 0.35
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.26
Consensus pattern (28 bp):
AAAAAATATTAAAAATTATAAAAAATAG
Found at i:37350803 original size:10 final size:10
Alignment explanation
Indices: 37350707--37350803 Score: 58
Period size: 10 Copynumber: 9.9 Consensus size: 10
37350697 ATAAATCAAT
*
37350707 AAAAGTTATA
1 AAAAATTATA
*
37350717 AAAAA-TATT
1 AAAAATTATA
**
37350726 AAATTTTAATA
1 AAAAATT-ATA
*
37350737 GAAAA-TAT-
1 AAAAATTATA
*
37350745 AAAAA-TATT
1 AAAAATTATA
37350754 AAAAATTATA
1 AAAAATTATA
* *
37350764 AAAAATAAGA
1 AAAAATTATA
* *
37350774 AAAAATAAGAA
1 AAAAATTA-TA
37350785 AAAAATTATA
1 AAAAATTATA
37350795 AAAAATTAT
1 AAAAATTAT
37350804 TAAGTTGTAA
Statistics
Matches: 67, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
8 7 0.10
9 13 0.19
10 35 0.52
11 12 0.18
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (10 bp):
AAAAATTATA
Found at i:37351298 original size:76 final size:76
Alignment explanation
Indices: 37351172--37351324 Score: 254
Period size: 76 Copynumber: 2.0 Consensus size: 76
37351162 GTAACACCCT
* * *
37351172 TTACCTAACCAACCTGCCAAGTCTAGGAATCGGATTCTGCATTAACTAGATTTACTTAAC-AATT
1 TTACCTAACCAAACTGCCAAGTCTAGGAATCGGATGCTGCATTAACTAGATTTACCTAACAAATT
37351236 TTTTTCTAATTC
66 TTTTT-TAATTC
*
37351248 TTACCTAACCAAACTGCCAAGTCTAGGTATCGGATGCTGCATTAACTAGATTTACCTAACAAATT
1 TTACCTAACCAAACTGCCAAGTCTAGGAATCGGATGCTGCATTAACTAGATTTACCTAACAAATT
37351313 TTTTTTAATTC
66 TTTTTTAATTC
37351324 T
1 T
37351325 AATTTAGTTA
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
76 63 0.88
77 9 0.12
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.37
Consensus pattern (76 bp):
TTACCTAACCAAACTGCCAAGTCTAGGAATCGGATGCTGCATTAACTAGATTTACCTAACAAATT
TTTTTTAATTC
Found at i:37352049 original size:7 final size:8
Alignment explanation
Indices: 37352021--37352049 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
37352011 ACACCAAGGG
37352021 TTTCAAAC
1 TTTCAAAC
37352029 TTTCAAAC
1 TTTCAAAC
37352037 TTTCAAA-
1 TTTCAAAC
37352044 TTTCAA
1 TTTCAA
37352050 TTGGTTAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (8 bp):
TTTCAAAC
Found at i:37352320 original size:19 final size:21
Alignment explanation
Indices: 37352283--37352330 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
37352273 TAAATTGTGA
*
37352283 AAAAATTAAAATTAAGGGG-T
1 AAAATTTAAAATTAAGGGGCT
* *
37352303 AGAATTTAAAA-TAGGGGGCT
1 AAAATTTAAAATTAAGGGGCT
37352323 AAAATTTA
1 AAAATTTA
37352331 GCTTAGAGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.50, C:0.02, G:0.21, T:0.27
Consensus pattern (21 bp):
AAAATTTAAAATTAAGGGGCT
Found at i:37353151 original size:7 final size:7
Alignment explanation
Indices: 37353135--37353165 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
37353125 TTCGAATGGC
37353135 AAATGATG
1 AAATG-TG
37353143 AAATGTG
1 AAATGTG
37353150 AAATGTG
1 AAATGTG
37353157 AAATGTG
1 AAATGTG
37353164 AA
1 AA
37353166 TTATATCGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.78
8 5 0.22
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (7 bp):
AAATGTG
Found at i:37354266 original size:42 final size:42
Alignment explanation
Indices: 37354184--37354266 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
37354174 CCTACAACAC
*
37354184 GGCCGTGTGACCCAAATCAATGAGTTACATGGGCAGAGACAT
1 GGCCGTGTGACCCAAATCAATGAGTTACATGGGCAAAGACAT
* * * *
37354226 GGCCGTGTGTCTCAAGTCAATGAGTTACATGGGTAAAGACA
1 GGCCGTGTGACCCAAATCAATGAGTTACATGGGCAAAGACA
37354267 CGGGCTGGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (42 bp):
GGCCGTGTGACCCAAATCAATGAGTTACATGGGCAAAGACAT
Found at i:37355578 original size:45 final size:45
Alignment explanation
Indices: 37355514--37355639 Score: 139
Period size: 45 Copynumber: 2.8 Consensus size: 45
37355504 ATAGCTTTTG
* * * **
37355514 CATGATTCCATATCGTCTTTTAGCTATGGTCTTA-TTCAT-TTCTGT
1 CATGATGCCATATCATCTTTCAGCTATGGTCTTACTT-ATCTT-TAC
*
37355559 CATGATGCCATATCATCTTTCAGTTATGGTCTTACTTATCTTTAC
1 CATGATGCCATATCATCTTTCAGCTATGGTCTTACTTATCTTTAC
* * *
37355604 CATGATGCCATAGCATCTTTCAACTACGGTCTTACT
1 CATGATGCCATATCATCTTTCAGCTATGGTCTTACT
37355640 GACTTTGATG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
45 65 0.94
46 4 0.06
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (45 bp):
CATGATGCCATATCATCTTTCAGCTATGGTCTTACTTATCTTTAC
Found at i:37360066 original size:46 final size:46
Alignment explanation
Indices: 37360014--37360334 Score: 464
Period size: 46 Copynumber: 7.0 Consensus size: 46
37360004 AGTGTGCTCT
*
37360014 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
37360060 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
37360106 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
37360152 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
37360198 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATTGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
37360244 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACGATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
37360290 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGATACGATGGCAA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
37360335 TGTAACACCC
Statistics
Matches: 251, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 250 1.00
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:37361801 original size:40 final size:40
Alignment explanation
Indices: 37361741--37361963 Score: 365
Period size: 40 Copynumber: 5.6 Consensus size: 40
37361731 CAAGCTCAAT
* * * * *
37361741 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
*
37361781 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
37361821 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
* * *
37361861 TGCCTTCAGGTCTTAGCCCGTATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
37361901 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
37361941 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
37361964 GTATTCAAAT
Statistics
Matches: 170, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
Found at i:37370246 original size:39 final size:40
Alignment explanation
Indices: 37370146--37370366 Score: 347
Period size: 40 Copynumber: 5.6 Consensus size: 40
37370136 CAAGCTCAAT
* * * * *
37370146 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
*
37370186 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
37370226 TGCCTT-GGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
* **
37370265 TGCCTTC-GGTCTTAGCCCGTATATATCAACTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
37370304 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
37370344 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
37370367 GTATTCAAAT
Statistics
Matches: 166, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 74 0.45
40 92 0.55
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
Found at i:37370256 original size:79 final size:80
Alignment explanation
Indices: 37370142--37370366 Score: 355
Period size: 79 Copynumber: 2.8 Consensus size: 80
37370132 ACCACAAGCT
* * * * *
37370142 CAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGG
**
37370207 ATATATCAACTTGCA
66 ATATATCAACTCACA
*
37370222 CAATTGCCTT-GGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTC-GGTCTTAGCCCGT
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGG
37370285 ATATATCAACTCACA
66 ATATATCAACTCACA
*
37370300 CAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGG
37370365 AT
66 AT
37370367 GTATTCAAAT
Statistics
Matches: 133, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
78 34 0.26
79 75 0.56
80 24 0.18
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (80 bp):
CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGG
ATATATCAACTCACA
Found at i:37372712 original size:24 final size:24
Alignment explanation
Indices: 37372677--37372725 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
37372667 AATAAAAAGT
*
37372677 TAGTAGATATTTTTGGATGATTCA
1 TAGTAGACATTTTTGGATGATTCA
37372701 TAGTAGACATTTTTGGATGATTCA
1 TAGTAGACATTTTTGGATGATTCA
37372725 T
1 T
37372726 CCATGGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.06, G:0.20, T:0.45
Consensus pattern (24 bp):
TAGTAGACATTTTTGGATGATTCA
Found at i:37375634 original size:34 final size:33
Alignment explanation
Indices: 37375563--37375634 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
37375553 AACACAGTGT
**
37375563 CAGTACAATCTGGGCCAAAGCCCTATTCAGTAA
1 CAGTACAATCTGGGCCAAAGCCCTAAACAGTAA
* ** *
37375596 CAGTACAGTCTGGGCCTTAGCCCTTAAACAGTAG
1 CAGTACAATCTGGGCCAAAGCCC-TAAACAGTAA
37375630 CAGTA
1 CAGTA
37375635 TAGGCCTAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 20 0.62
34 12 0.38
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (33 bp):
CAGTACAATCTGGGCCAAAGCCCTAAACAGTAA
Found at i:37375742 original size:30 final size:31
Alignment explanation
Indices: 37375662--37375744 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
37375652 TTAGTCTCGA
37375662 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
37375692 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
37375723 CATATCACT-GGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
37375745 ACTGTAAGCA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 17 0.33
31 34 0.67
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:37375998 original size:25 final size:25
Alignment explanation
Indices: 37375964--37376033 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
37375954 CTCTTTTAAT
*
37375964 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
37375989 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
37376014 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37376034 AGTACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37376905 original size:27 final size:27
Alignment explanation
Indices: 37376843--37376920 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
37376833 GGGCATATTC
37376843 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
37376870 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
37376897 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
37376921 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:37376990 original size:27 final size:27
Alignment explanation
Indices: 37376960--37377045 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
37376950 GTAAATCTAC
37376960 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
37376987 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
37377013 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
37377043 AAA
1 AAA
37377046 TTAGGGGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.45
28 7 0.14
29 18 0.37
30 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:37377064 original size:27 final size:27
Alignment explanation
Indices: 37377023--37377179 Score: 140
Period size: 27 Copynumber: 5.8 Consensus size: 27
37377013 AGAAAGTCAA
** *
37377023 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
* *
37377050 GGGTATTTTGATAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
37377076 AGAGTATTTTGGTAATTTCACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
37377104 TGGTATTTTGGCAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* **
37377131 GGGTATTTTGGTAATTCTACCCTA-TAG
1 GGGTATTTTGGTAATTTTA-CAAACTAG
* *
37377158 GGGTATTTTAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
37377180 TCGAAGGTAA
Statistics
Matches: 104, Mismatches: 22, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
26 4 0.04
27 96 0.92
28 4 0.04
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:37377215 original size:27 final size:27
Alignment explanation
Indices: 37377178--37377242 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
37377168 GTAATTTCAC
* * *
37377178 AATCGAAGGTAAAACAATAATTTTGTA
1 AATCGAGGGTAAAACAATAATTCTATA
* *
37377205 AATCGAGGGTAAAACAGTGATTCTATA
1 AATCGAGGGTAAAACAATAATTCTATA
37377232 AATCGAGGGTA
1 AATCGAGGGTA
37377243 CTTTGGTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.43, C:0.09, G:0.22, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACAATAATTCTATA
Found at i:37382087 original size:44 final size:44
Alignment explanation
Indices: 37382024--37382113 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
37382014 CATTGATAAC
*
37382024 CACCAATTCAATATGCATTTAGCTATATCCACAATTAAAACAAA
1 CACCAATTCAACATGCATTTAGCTATATCCACAATTAAAACAAA
37382068 CACCAATTCAACATGCATTTAGCTATATCCACAATTAAAACAAA
1 CACCAATTCAACATGCATTTAGCTATATCCACAATTAAAACAAA
37382112 CA
1 CA
37382114 TACCAAAACA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.46, C:0.24, G:0.04, T:0.26
Consensus pattern (44 bp):
CACCAATTCAACATGCATTTAGCTATATCCACAATTAAAACAAA
Found at i:37383864 original size:28 final size:28
Alignment explanation
Indices: 37383828--37383896 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
37383818 GTAGTAAGTC
37383828 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
* *
37383856 CGCATACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
37383884 CGCACACTTAGTG
1 CGCACACTTAGTG
37383897 TCAATCTCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 32 0.89
29 3 0.08
30 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:37392529 original size:22 final size:22
Alignment explanation
Indices: 37392498--37392540 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
37392488 GTACGAGACC
37392498 GGATTAGCTTATTAGAAAACAT
1 GGATTAGCTTATTAGAAAACAT
*
37392520 GGATTCGCTTATTAGAAAACA
1 GGATTAGCTTATTAGAAAACA
37392541 CAGGTGTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.30
Consensus pattern (22 bp):
GGATTAGCTTATTAGAAAACAT
Found at i:37398411 original size:68 final size:66
Alignment explanation
Indices: 37398339--37398510 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
37398329 CATCATGTGT
* * * *
37398339 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
37398402 TGTAG
62 TGTAG
** * *
37398407 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
37398472 AG
65 AG
* * * *
37398474 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
37398511 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:37398444 original size:64 final size:64
Alignment explanation
Indices: 37398363--37398546 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
37398353 AGACATTATG
* * *
37398363 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
37398427 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
37398492 AA
63 AA
* * *
37398494 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
37398547 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:37402830 original size:24 final size:25
Alignment explanation
Indices: 37402788--37402834 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
37402778 ACCTTTGCTC
*
37402788 TTCTAGCATGAACTTGTCTTACCCT
1 TTCTAGCATGAACTCGTCTTACCCT
*
37402813 TTCTAGTAT-AACTCGTCTTACC
1 TTCTAGCATGAACTCGTCTTACC
37402835 TTACCTTACC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.21, C:0.28, G:0.11, T:0.40
Consensus pattern (25 bp):
TTCTAGCATGAACTCGTCTTACCCT
Found at i:37404802 original size:79 final size:81
Alignment explanation
Indices: 37404666--37404850 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
37404656 TTGAATGATG
*
37404666 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
37404730 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
37404745 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
37404807 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
37404825 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37404851 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:37404864 original size:40 final size:40
Alignment explanation
Indices: 37404667--37404850 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
37404657 TGAATGATGT
* * * *
37404667 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
37404707 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
37404747 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37404785 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37404826 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
37404851 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37404872 original size:79 final size:79
Alignment explanation
Indices: 37404719--37404883 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
37404709 GGACTAAGAT
* **
37404719 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
37404784 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
37404798 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
37404861 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37404877 CCGAAGG
1 CCGAAGG
37404884 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:37412754 original size:77 final size:80
Alignment explanation
Indices: 37412620--37412802 Score: 225
Period size: 77 Copynumber: 2.3 Consensus size: 80
37412610 TTGAATGATG
*
37412620 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
37412684 TGTGCGAG-ACTA-A
66 TGTGCGAGTACTATA
* * * **
37412697 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
37412759 TTTGTGCGAGTTACTATA
64 TTTGTGCGAG-TACTATA
* *
37412777 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37412803 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
76 1 0.01
77 44 0.48
78 18 0.20
79 13 0.14
80 15 0.16
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTACTATA
Found at i:37412809 original size:40 final size:40
Alignment explanation
Indices: 37412620--37412802 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
37412610 TTGAATGATG
* * * *
37412620 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
37412660 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG--ACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
37412698 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37412737 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37412778 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37412803 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
37 19 0.15
38 13 0.10
39 15 0.12
40 69 0.55
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37412820 original size:80 final size:76
Alignment explanation
Indices: 37412673--37412835 Score: 195
Period size: 79 Copynumber: 2.1 Consensus size: 76
37412663 GGACTAAGAT
* **
37412673 CCGAAGGCATTTGTGCGAGACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGAAGGCATTTGTGCGAGACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
37412738 CCGGGTTAAGTC
66 CC-GGTTAAATC
*
37412750 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAG--ACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
37412813 TATATCCGGTTAAATT
61 TAAATCCGGTTAAATC
37412829 CCGAAGG
1 CCGAAGG
37412836 TACGTGATTT
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
77 19 0.26
78 2 0.03
79 28 0.38
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (76 bp):
CCGAAGGCATTTGTGCGAGACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGTTAAATC
Found at i:37417546 original size:27 final size:27
Alignment explanation
Indices: 37417516--37417575 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
37417506 CCTTGATTTG
* * *
37417516 TAAAATTACCGAAATACCCTTGTAGTA
1 TAAAATTACCAAAATACCCCTATAGTA
*
37417543 TAAAATTACCAAAATACCCCTATAGTG
1 TAAAATTACCAAAATACCCCTATAGTA
37417570 TAAAAT
1 TAAAAT
37417576 GACTGTTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.28
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTATAGTA
Found at i:37420810 original size:19 final size:19
Alignment explanation
Indices: 37420771--37420810 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37420761 ATATGTCAAA
* *
37420771 ATTTCAAATATCCAAATTG
1 ATTTCAAATATCAAAAGTG
*
37420790 ATTTCAATTATCAAAAGTG
1 ATTTCAAATATCAAAAGTG
37420809 AT
1 AT
37420811 CAAATGTGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.38
Consensus pattern (19 bp):
ATTTCAAATATCAAAAGTG
Found at i:37421812 original size:22 final size:21
Alignment explanation
Indices: 37421773--37421813 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
37421763 CATATTATAA
**
37421773 AACAAAGAGAAATTTAGAATG
1 AACAAAGAGAAAAATAGAATG
37421794 AACAAGAGAGAAAAATAGAA
1 AACAA-AGAGAAAAATAGAA
37421814 AAAATGAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.63, C:0.05, G:0.20, T:0.12
Consensus pattern (21 bp):
AACAAAGAGAAAAATAGAATG
Found at i:37422468 original size:18 final size:18
Alignment explanation
Indices: 37422445--37422518 Score: 53
Period size: 18 Copynumber: 4.2 Consensus size: 18
37422435 CCACATGCTA
*
37422445 TTCTTTTTATTTTTTTCT
1 TTCTTTTTATTTCTTTCT
* * **
37422463 TTCTTTCTATTCCTTAAT
1 TTCTTTTTATTTCTTTCT
*
37422481 TTC-TTTTACTTT-TTTTT
1 TTCTTTTTA-TTTCTTTCT
* *
37422498 TTATTTTTCTTTCTTTCT
1 TTCTTTTTATTTCTTTCT
37422516 TTC
1 TTC
37422519 ACGCCTCCAG
Statistics
Matches: 40, Mismatches: 13, Indels: 6
0.68 0.22 0.10
Matches are distributed among these distances:
17 12 0.30
18 28 0.70
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (18 bp):
TTCTTTTTATTTCTTTCT
Found at i:37424646 original size:27 final size:27
Alignment explanation
Indices: 37424616--37424769 Score: 188
Period size: 27 Copynumber: 5.7 Consensus size: 27
37424606 TTACCTTACA
*
37424616 GGGGTATTTTAGTAATTTTACAAACTG
1 GGGGTATTTCAGTAATTTTACAAACTG
* *
37424643 GGGGTATTTCGGTAATTTTACAAAC-C
1 GGGGTATTTCAGTAATTTTACAAACTG
* *
37424669 AGGGTATTTCAGTAATTTTACAAACTT
1 GGGGTATTTCAGTAATTTTACAAACTG
* *
37424696 AGGGTATTTC-GATAATTTTTCAAA-TCG
1 GGGGTATTTCAG-TAATTTTACAAACT-G
* *
37424723 GGGGTATTTCGGTAATTTTACAAACTA
1 GGGGTATTTCAGTAATTTTACAAACTG
37424750 GGGGTATTTCAGTAATTTTA
1 GGGGTATTTCAGTAATTTTA
37424770 AATAGTTTGG
Statistics
Matches: 110, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
26 25 0.23
27 83 0.75
28 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGGTATTTCAGTAATTTTACAAACTG
Found at i:37424672 original size:54 final size:54
Alignment explanation
Indices: 37424614--37424769 Score: 217
Period size: 53 Copynumber: 2.9 Consensus size: 54
37424604 TTTTACCTTA
* *
37424614 CAGGGGTATTTTAGTAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAAC
1 CAGGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAAC
* * *
37424668 CA-GGGTATTTCAGTAATTTTACAAACTTA-GGGTATTTCGATAATTTTTCAAAT
1 CAGGGGTATTTCAGTAATTTTACAAAC-TAGGGGTATTTCGGTAATTTTACAAAC
* * *
37424721 CGGGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCAGTAATTTTA
1 CAGGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTA
37424770 AATAGTTTGG
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
53 47 0.53
54 42 0.47
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAAC
Found at i:37436489 original size:16 final size:16
Alignment explanation
Indices: 37436468--37436499 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37436458 ATTTATTTTA
37436468 ATACAAAAATCACATT
1 ATACAAAAATCACATT
*
37436484 ATACAAAAATTACATT
1 ATACAAAAATCACATT
37436500 TTTGCCCCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATACAAAAATCACATT
Found at i:37454890 original size:50 final size:50
Alignment explanation
Indices: 37454822--37455102 Score: 337
Period size: 50 Copynumber: 5.7 Consensus size: 50
37454812 GGTGCTGACA
* *
37454822 CCATGTCCCAGACATGGTCTTACACT-GACTCTCGTATATCGAGGCTGATG
1 CCATGTCCCAAACATGGTCTTACACTAG-CTCTCATATATCGAGGCTGATG
* *
37454872 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTATCG-GTGCCGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAG-GCTGATG
* * *
37454922 CCATGTCCCAAACATGGTCTTACACT-G---GCACATATC-AAG-TAGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGCT-GATG
* * * *
37454967 CCATGTCCCAGACATGGTCTTACACTAGCTCCCATAT-TTGAGGCCGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGCTGATG
* *
37455016 CCATGTCCCAAACATGGTCTTACACTAGCTCTTATATCTCGAGGCTGATG
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGCTGATG
* *
37455066 CCATGTCCGAGACATGGTCTTACACTAGCTCTCATAT
1 CCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
37455103 CTCCCTAACA
Statistics
Matches: 197, Mismatches: 23, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
45 30 0.15
46 7 0.04
48 1 0.01
49 46 0.23
50 112 0.57
51 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
CCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCGAGGCTGATG
Found at i:37455083 original size:144 final size:145
Alignment explanation
Indices: 37454822--37455091 Score: 411
Period size: 144 Copynumber: 1.9 Consensus size: 145
37454812 GGTGCTGACA
* * *
37454822 CCATGTCCCAGACATGGTCTTACACTGACTCTCGTATATCGAGGCTGATGCCATGTCCCAAACAT
1 CCATGTCCCAGACATGGTCTTACACTGACTCCCATATATCGAGGCCGATGCCATGTCCCAAACAT
*
37454887 GGTCTTACACTAGCTCTCATCTATCGGTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCA
66 GGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCA
37454952 CATATCAAGTAGATG
131 CATATCAAGTAGATG
*
37454967 CCATGTCCCAGACATGGTCTTACACT-AGCTCCCATAT-TTGAGGCCGATGCCATGTCCCAAACA
1 CCATGTCCCAGACATGGTCTTACACTGA-CTCCCATATATCGAGGCCGATGCCATGTCCCAAACA
* * * * *
37455030 TGGTCTTACACTAGCTCTTATATCTCGAG-GCTGATGCCATGTCCGAGACATGGTCTTACACT
65 TGGTCTTACACTAGCTCTCATATATCG-GTGCCGATGCCATGTCCCAAACATGGTCTTACACT
37455092 AGCTCTCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
144 79 0.70
145 34 0.30
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (145 bp):
CCATGTCCCAGACATGGTCTTACACTGACTCCCATATATCGAGGCCGATGCCATGTCCCAAACAT
GGTCTTACACTAGCTCTCATATATCGGTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCA
CATATCAAGTAGATG
Found at i:37456723 original size:14 final size:14
Alignment explanation
Indices: 37456704--37456732 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37456694 CTCCTGTTCT
37456704 ATATATTTTTGATA
1 ATATATTTTTGATA
37456718 ATATATTTTTGATA
1 ATATATTTTTGATA
37456732 A
1 A
37456733 GTTATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (14 bp):
ATATATTTTTGATA
Found at i:37456741 original size:18 final size:16
Alignment explanation
Indices: 37456703--37456749 Score: 62
Period size: 18 Copynumber: 2.9 Consensus size: 16
37456693 GCTCCTGTTC
37456703 TATATATTTTTGAT-A
1 TATATATTTTTGATAA
37456718 -ATATATTTTTGATAA
1 TATATATTTTTGATAA
37456733 GTTATATATTTTTGATA
1 --TATATATTTTTGATA
37456750 TCATTAAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
14 13 0.46
15 1 0.04
18 14 0.50
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (16 bp):
TATATATTTTTGATAA
Found at i:37458104 original size:18 final size:18
Alignment explanation
Indices: 37458062--37458106 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 18
37458052 TATTATTATT
37458062 TTTCTTTCTTTTTGTTCA
1 TTTCTTTCTTTTTGTTCA
*
37458080 TTCCTTTC-TTTTG--C-
1 TTTCTTTCTTTTTGTTCA
37458094 TTTCTTTCTTTTT
1 TTTCTTTCTTTTT
37458107 CTTTCCTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 7 0.29
15 5 0.21
17 5 0.21
18 7 0.29
ACGTcount: A:0.02, C:0.20, G:0.04, T:0.73
Consensus pattern (18 bp):
TTTCTTTCTTTTTGTTCA
Found at i:37460659 original size:42 final size:42
Alignment explanation
Indices: 37460551--37460667 Score: 148
Period size: 43 Copynumber: 2.8 Consensus size: 42
37460541 CGTACCAATG
* *
37460551 CCATATCCCA-AGTATGGTCTTACATGTAATCTCGTATCGATG
1 CCATATCCCAGA-TATGGTCTTACACGTAATCTCGTATCGATA
* *
37460593 CCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCGTATCGATA
1 CC-ATATCCCAGATATGGTCTTACACGTAA-TCTCGTATCGATA
*
37460636 CCATATCCCAGATATGGTCTTACACATAATCT
1 CCATATCCCAGATATGGTCTTACACGTAATCT
37460668 TAGTAACCTT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
42 28 0.44
43 36 0.56
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGTAATCTCGTATCGATA
Done.