Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 119 of 253
Found at i:37462330 original size:43 final size:44
Alignment explanation
Indices: 37462228--37462331 Score: 110
Period size: 43 Copynumber: 2.4 Consensus size: 44
37462218 GTCCTAGACG
* *
37462228 TGGTCTTACATGT-AATCAAATATCTATGTCACTATCCCGGACA
1 TGGTCTTACATGTAAATCAAATATCGATGCCACTATCCCGGACA
* * *
37462271 GGGTCTTACACG-AAATCAAATA-CGATGCCGA-TGTCCCAGG-CA
1 TGGTCTTACATGTAAATCAAATATCGATGCC-ACTATCCC-GGACA
37462313 TGGTCTTACATGTAAATCA
1 TGGTCTTACATGTAAATCA
37462332 TAAGTCAATG
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
42 22 0.44
43 28 0.56
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (44 bp):
TGGTCTTACATGTAAATCAAATATCGATGCCACTATCCCGGACA
Found at i:37472978 original size:14 final size:13
Alignment explanation
Indices: 37472952--37472991 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
37472942 GTTTAAAGAC
*
37472952 TTTTATTTATTAT
1 TTTTATTTTTTAT
37472965 TTTTATGTTTTTAT
1 TTTTAT-TTTTTAT
37472979 TTTTATCTTTTTA
1 TTTTAT-TTTTTA
37472992 AAACTACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:37481449 original size:43 final size:42
Alignment explanation
Indices: 37481373--37481531 Score: 117
Period size: 43 Copynumber: 3.7 Consensus size: 42
37481363 AGAAAGCTCG
* *
37481373 TACAATGCCAATGTCCCA-A-ATGTAGTCTGACATGTAATCAAA
1 TACAATGCCAATGTCCCAGACACG--GTCTTACATGTAATCAAA
* * * * * *
37481415 TATCGATGCCACTGTCCCAGATAGGGTCTTACATGAAATTAAA
1 TA-CAATGCCAATGTCCCAGACACGGTCTTACATGTAATCAAA
* *
37481458 TACAATGCTAATGTCCCAGACACGATCTTACATGTAAATCATAA
1 TACAATGCCAATGTCCCAGACACGGTCTTACATGT-AATCA-AA
* * **
37481502 GT-CCATGCCAACGTCCCAGACGTGGTCTTA
1 -TACAATGCCAATGTCCCAGACACGGTCTTA
37481532 GATGAAAACA
Statistics
Matches: 91, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
42 28 0.31
43 35 0.38
44 25 0.27
45 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACACGGTCTTACATGTAATCAAA
Found at i:37486311 original size:49 final size:49
Alignment explanation
Indices: 37486125--37486594 Score: 705
Period size: 47 Copynumber: 9.8 Consensus size: 49
37486115 TTAGGATTCT
* * *
37486125 ATGTGATGGATGTGAACA-TGCATATATA--AGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCG
37486172 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
37486219 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
37486266 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
37486315 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA----TGGCCG
37486368 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
37486417 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
37486464 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * * *
37486511 ATGTGATGAATGTGAAAGTGTGTATATATGTGACATGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
37486560 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
37486595 TCCCGAAGGG
Statistics
Matches: 400, Mismatches: 12, Indels: 22
0.92 0.03 0.05
Matches are distributed among these distances:
45 6 0.01
46 1 0.00
47 204 0.51
48 1 0.00
49 139 0.35
53 49 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:37490716 original size:35 final size:35
Alignment explanation
Indices: 37490677--37490747 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
37490667 TAAGTAAAAT
37490677 TATTTCAAAGAAAACAAATTAAACATTCCTTAACC
1 TATTTCAAAGAAAACAAATTAAACATTCCTTAACC
* *
37490712 TATTTCTAAGGAAACAAATTAAACATTCCTTAACC
1 TATTTCAAAGAAAACAAATTAAACATTCCTTAACC
37490747 T
1 T
37490748 TGTCGTTGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.31
Consensus pattern (35 bp):
TATTTCAAAGAAAACAAATTAAACATTCCTTAACC
Found at i:37497077 original size:5 final size:5
Alignment explanation
Indices: 37497067--37497120 Score: 56
Period size: 5 Copynumber: 10.8 Consensus size: 5
37497057 AAAATTAGGG
* ** *
37497067 AAAAT AAAAT AAAAT AAAAT AAAGT AAAACT AACTT AAAAT AAAA- ATAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAAAT AAAAT
37497117 AAAA
1 AAAA
37497121 ATAATACATA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
4 3 0.08
5 33 0.85
6 3 0.08
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:37508570 original size:21 final size:22
Alignment explanation
Indices: 37508546--37508594 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
37508536 TGTTAAAACA
37508546 AGTGAGGAAAA-AG-AAAAAGAG
1 AGTGA-GAAAAGAGCAAAAAGAG
37508567 AGTGA-AAAAGAGCAAAAAGAG
1 AGTGAGAAAAGAGCAAAAAGAG
*
37508588 ATTGAGA
1 AGTGAGA
37508595 GTGAAAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.17
20 2 0.08
21 17 0.71
22 1 0.04
ACGTcount: A:0.59, C:0.02, G:0.31, T:0.08
Consensus pattern (22 bp):
AGTGAGAAAAGAGCAAAAAGAG
Found at i:37512285 original size:27 final size:27
Alignment explanation
Indices: 37512229--37512283 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
37512219 TATTCAACAC
* * *
37512229 TTAGGGGTATTTCGGTCATTTTTGCCT
1 TTAGGGGCATTTCAGTAATTTTTGCCT
37512256 TTAGGGGCATTTCAGTAATTTTT-CCT
1 TTAGGGGCATTTCAGTAATTTTTGCCT
37512282 TT
1 TT
37512284 TATTACGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.49
Consensus pattern (27 bp):
TTAGGGGCATTTCAGTAATTTTTGCCT
Found at i:37512623 original size:29 final size:29
Alignment explanation
Indices: 37512562--37512648 Score: 122
Period size: 29 Copynumber: 3.0 Consensus size: 29
37512552 CAAGTACTTG
* *
37512562 TATATGACCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
37512590 TATATGGTCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
37512619 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
37512648 T
1 T
37512649 TAGTCATGCT
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 16 0.31
29 36 0.69
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:37512733 original size:17 final size:17
Alignment explanation
Indices: 37512711--37512748 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
37512701 ACCTATTATG
37512711 GGCCCAATAGCCCATCA
1 GGCCCAATAGCCCATCA
37512728 GGCCCAATAGCCCATCA
1 GGCCCAATAGCCCATCA
37512745 GGCC
1 GGCC
37512749 TATTAAGCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.42, G:0.21, T:0.11
Consensus pattern (17 bp):
GGCCCAATAGCCCATCA
Found at i:37519493 original size:48 final size:48
Alignment explanation
Indices: 37519437--37519530 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
37519427 ATGTCTCATA
* *
37519437 TCGATGCCAATGCCATGTCCCAGACATGGTATTACGTGGGATCACATC
1 TCGATGCCAATGCCATGTCCCAAACATGGTATTACATGGGATCACATC
*
37519485 TCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
1 TCGATGCCAATGCCATGTCCCAAACATGGTATTACATGGGATCACA
37519531 CAAAACACTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (48 bp):
TCGATGCCAATGCCATGTCCCAAACATGGTATTACATGGGATCACATC
Found at i:37522639 original size:30 final size:30
Alignment explanation
Indices: 37522605--37522664 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37522595 ATTTAATACG
37522605 AACTTTAGAAAAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
* * *
37522635 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
37522665 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAGAAAAATTACACTTTTGCCCCTA
Found at i:37527211 original size:14 final size:15
Alignment explanation
Indices: 37527186--37527221 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
37527176 CAATCTATAA
37527186 AACAGAGAAATAAAG
1 AACAGAGAAATAAAG
37527201 AACAG-GAAATAAAG
1 AACAGAGAAATAAAG
37527215 AACAGAG
1 AACAGAG
37527222 TAAGCTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.64, C:0.08, G:0.22, T:0.06
Consensus pattern (15 bp):
AACAGAGAAATAAAG
Found at i:37527919 original size:39 final size:39
Alignment explanation
Indices: 37527876--37528015 Score: 208
Period size: 39 Copynumber: 3.6 Consensus size: 39
37527866 ACCAGCTCGA
* * * ** * *
37527876 AGCCTGTGGAACTTTAGTCCGGATATTTTTCCAACACGT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
*
37527915 AGCCTGCGGACCTTAAGTCCAGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
37527954 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
37527993 AGCCTGCGGACCTTAAGTCCGGA
1 AGCCTGCGGACCTTAAGTCCGGA
37528016 ATCACATCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:37529745 original size:30 final size:32
Alignment explanation
Indices: 37529684--37529748 Score: 107
Period size: 31 Copynumber: 2.1 Consensus size: 32
37529674 TTCAATCTCA
*
37529684 ACATATACTGGGCCGAAGCCTCTTTATAATTC
1 ACATATACTGGGCCGAAGCCTCTTCATAATTC
37529716 ACAT-TACTGGGCCGAAGCCT-TTCATAATTC
1 ACATATACTGGGCCGAAGCCTCTTCATAATTC
37529746 ACA
1 ACA
37529749 ACTCATATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 12 0.38
31 16 0.50
32 4 0.12
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (32 bp):
ACATATACTGGGCCGAAGCCTCTTCATAATTC
Found at i:37530023 original size:25 final size:25
Alignment explanation
Indices: 37529995--37530064 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
37529985 TTCTTTTAAT
*
37529995 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* * *
37530020 AACTAGGACAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
37530045 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37530065 GCACTTCCTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37530137 original size:20 final size:21
Alignment explanation
Indices: 37530112--37530159 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
37530102 AAATGAATAC
*
37530112 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
37530132 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
37530153 ATCATGT
1 ATCATGT
37530160 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:37537069 original size:31 final size:31
Alignment explanation
Indices: 37537031--37537093 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
37537021 CGTTTCACAC
* *
37537031 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTAGGCCAAAGCCTT
**
37537062 TTCATATTTCATATTACTAGGCCAAAGCCTT
1 TTCATATTTCATAACACTAGGCCAAAGCCTT
37537093 T
1 T
37537094 GCTGTAAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTAGGCCAAAGCCTT
Found at i:37537369 original size:25 final size:25
Alignment explanation
Indices: 37537278--37537431 Score: 208
Period size: 25 Copynumber: 6.2 Consensus size: 25
37537268 AGCATAGCTG
*
37537278 CTTTATCATGTAACTGGAGGCCT-AGCC
1 CTTTATCA--TAACTGG-GGCATAAGCC
*
37537305 TCTTT-TAATAACTGGGGCA-AAGCC
1 -CTTTATCATAACTGGGGCATAAGCC
*
37537329 CTTT-TAATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
37537353 CTTTATCATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
*
37537378 CTTTATCATAACTGCGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
37537403 CTTTATCATAACTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCC
37537428 CTTT
1 CTTT
37537432 TACACTTCCT
Statistics
Matches: 118, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
23 18 0.15
24 16 0.14
25 78 0.66
27 2 0.02
28 4 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (25 bp):
CTTTATCATAACTGGGGCATAAGCC
Found at i:37537507 original size:20 final size:20
Alignment explanation
Indices: 37537482--37537528 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
37537472 TTATGAATAC
37537482 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
37537502 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
37537522 ACCATGT
1 ATCATGT
37537529 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:37540704 original size:30 final size:32
Alignment explanation
Indices: 37540644--37540708 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 32
37540634 TTCAATCTCA
* *
37540644 ACATATACTGGGCCGAAGCCTCTTCATAATTC
1 ACATATACTAGGCCAAAGCCTCTTCATAATTC
*
37540676 ACAT-TACTAGGCCAAAGCCT-TTTATAATTC
1 ACATATACTAGGCCAAAGCCTCTTCATAATTC
37540706 ACA
1 ACA
37540709 ACTCATATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 12 0.40
31 14 0.47
32 4 0.13
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.29
Consensus pattern (32 bp):
ACATATACTAGGCCAAAGCCTCTTCATAATTC
Found at i:37540982 original size:25 final size:25
Alignment explanation
Indices: 37540954--37541023 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
37540944 CTCTTTTAAT
*
37540954 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* * * *
37540979 AACTAGCGCCAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
37541004 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37541024 GCACTTCCTC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37541096 original size:20 final size:21
Alignment explanation
Indices: 37541071--37541119 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
37541061 AAATGAATAC
* *
37541071 ATCATGTGCATATCATA-CAT
1 ATCATGTACATATCATATCAA
37541091 ATCATGTACATATCATATCAA
1 ATCATGTACATATCATATCAA
37541112 ATCATGTA
1 ATCATGTA
37541120 TATCAAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (21 bp):
ATCATGTACATATCATATCAA
Found at i:37541100 original size:11 final size:11
Alignment explanation
Indices: 37541071--37541119 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
37541061 AAATGAATAC
*
37541071 ATCATGTGCAT
1 ATCATGTACAT
37541082 ATCA--TACAT
1 ATCATGTACAT
37541091 ATCATGTACAT
1 ATCATGTACAT
* *
37541102 ATCATAT-CAA
1 ATCATGTACAT
37541112 ATCATGTA
1 ATCATGTA
37541120 TATCAAAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
9 8 0.26
10 8 0.26
11 15 0.48
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:37548623 original size:22 final size:22
Alignment explanation
Indices: 37548598--37548720 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
37548588 ACATGCATAT
37548598 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
37548620 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
37548644 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
37548667 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
37548691 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
37548714 ATGTGAT
1 ATGTGAT
37548721 GAATGTGACC
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:37548800 original size:94 final size:94
Alignment explanation
Indices: 37548577--37548810 Score: 328
Period size: 94 Copynumber: 2.5 Consensus size: 94
37548567 GATTTTATGA
* * *
37548577 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAACAGGCA
*
37548642 TATATGTGATAAGGCCGAATGGCCAATGT
66 TATATGTGATAAGGCAGAATGGCCAATGT
* * *
37548671 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGACCAGGCA
1 GATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAACAGGCA
*
37548736 TATATGTGATAAGGTAGAATGGCCAATGT
66 TATATGTGATAAGGCAGAATGGCCAATGT
* * * *
37548765 GATGAACGTGGAA-GTGTATATATGTGGCGAA-GCCGAATGGCTAATG
1 GATGAACGT-GAACATGCATATATGT-GAGAAGGCCGAATGGCCAATG
37548811 CGAAATGTGT
Statistics
Matches: 128, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
94 122 0.95
95 6 0.05
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (94 bp):
GATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAACAGGCA
TATATGTGATAAGGCAGAATGGCCAATGT
Found at i:37548805 original size:47 final size:47
Alignment explanation
Indices: 37548577--37548770 Score: 352
Period size: 47 Copynumber: 4.1 Consensus size: 47
37548567 GATTTTATGA
37548577 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
37548624 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
37548671 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * **
37548718 GATGAATGTGACCAGGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
37548765 GATGAA
1 GATGAA
37548771 CGTGGAAGTG
Statistics
Matches: 143, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 143 1.00
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:37548848 original size:46 final size:46
Alignment explanation
Indices: 37548794--37548966 Score: 283
Period size: 46 Copynumber: 3.8 Consensus size: 46
37548784 ATATGTGGCG
**
37548794 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
* *
37548840 AAGTCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
37548886 AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
* * *
37548932 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAACATGTATGAGATG
37548967 TGTGTATATA
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 120 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAACATGTATGAGATGGATATGAGGTA
Found at i:37561613 original size:20 final size:20
Alignment explanation
Indices: 37561590--37561628 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
37561580 TAAACATGGT
37561590 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
37561610 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
37561629 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:37561735 original size:24 final size:23
Alignment explanation
Indices: 37561679--37561825 Score: 204
Period size: 24 Copynumber: 6.2 Consensus size: 23
37561669 GAGGAAGTGA
37561679 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
37561702 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
37561725 CAAAAGGGCTTATGCTCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
37561749 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
37561773 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
37561796 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
37561821 AAAAG
1 AAAAG
37561826 AGGCAAGGCC
Statistics
Matches: 110, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
23 43 0.39
24 66 0.60
25 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:37561748 original size:47 final size:47
Alignment explanation
Indices: 37561679--37561825 Score: 206
Period size: 47 Copynumber: 3.1 Consensus size: 47
37561669 GAGGAAGTGA
*
37561679 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * * *
37561725 CAAAAGGGCTTATGCTCTAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
37561773 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
37561821 AAAAG
1 AAAAG
37561826 AGGCAAGGCC
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
47 61 0.70
48 26 0.30
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:37561795 original size:71 final size:71
Alignment explanation
Indices: 37561679--37561825 Score: 240
Period size: 71 Copynumber: 2.1 Consensus size: 71
37561669 GAGGAAGTGA
* * * *
37561679 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCTCTA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
37561744 GTTATC
66 GTTATC
*
37561750 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
37561815 GTTATT
66 GTTATC
37561821 AAAAG
1 AAAAG
37561826 AGGCAAGGCC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:37562073 original size:31 final size:31
Alignment explanation
Indices: 37562038--37562101 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37562028 CGTTTACAGT
*
37562038 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
37562069 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37562100 AA
1 AA
37562102 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37564288 original size:29 final size:29
Alignment explanation
Indices: 37564249--37564327 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
37564239 CTTAATAATC
*
37564249 AACCACGCACACTTAGTGCCATGTACTTAA
1 AACC-CGCACACTTAGTGCCATGCACTTAA
* * *
37564279 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCACTTAA
*
37564308 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37564328 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 40 0.93
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.23
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTAA
Found at i:37574141 original size:37 final size:37
Alignment explanation
Indices: 37574091--37574242 Score: 234
Period size: 37 Copynumber: 4.1 Consensus size: 37
37574081 ACCTTTAGCT
* * *
37574091 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
37574128 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
37574165 CAGG-CAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 C-GGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
37574202 CGGACATACTCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
37574239 CGGA
1 CGGA
37574243 ATATATTTCC
Statistics
Matches: 107, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
36 2 0.02
37 103 0.96
38 2 0.02
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:37574457 original size:47 final size:47
Alignment explanation
Indices: 37574405--37574778 Score: 541
Period size: 47 Copynumber: 8.0 Consensus size: 47
37574395 TTTCACACTA
* * * * *
37574405 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
37574452 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
37574499 GCCATTCGGCCTTATCATATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * * *
37574546 GCCTTTCGGCCTCATCACATATATACATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
37574593 GCCATTCGACCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
37574640 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
37574687 GCCATTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
37574734 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
37574779 AAAATCCTAA
Statistics
Matches: 290, Mismatches: 37, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 290 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:37574591 original size:25 final size:25
Alignment explanation
Indices: 37574557--37574637 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 25
37574547 CCTTTCGGCC
37574557 TCATCACATATATACATGTTCACAT
1 TCATCACATATATACATGTTCACAT
*** *
37574582 TCATCACATA-GGCCA--TTCGACCT
1 TCATCACATATATACATGTTC-ACAT
* *
37574605 T-ATCACATATATGCATGCTCACAT
1 TCATCACATATATACATGTTCACAT
37574629 TCATCACAT
1 TCATCACAT
37574638 TGGCCATTCG
Statistics
Matches: 42, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
22 11 0.26
23 6 0.14
24 6 0.14
25 19 0.45
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.32
Consensus pattern (25 bp):
TCATCACATATATACATGTTCACAT
Found at i:37574705 original size:22 final size:22
Alignment explanation
Indices: 37574680--37574753 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 22
37574670 TCATATTCAC
37574680 CACATTGGCCATTCAGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
*
37574702 CACACATAT-G-CATGCTCA-CATTCAT
1 --CACAT-TGGCCAT--TCAGCCTT-AT
*
37574727 CACATTGGCCATTCGGCCTTAT
1 CACATTGGCCATTCAGCCTTAT
37574749 CACAT
1 CACAT
37574754 ATATACACAT
Statistics
Matches: 40, Mismatches: 3, Indels: 16
0.68 0.05 0.27
Matches are distributed among these distances:
22 10 0.25
23 12 0.30
24 12 0.30
25 6 0.15
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (22 bp):
CACATTGGCCATTCAGCCTTAT
Found at i:37579600 original size:27 final size:28
Alignment explanation
Indices: 37579537--37579634 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
37579527 CATGAGATTG
* * *
37579537 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTTC-GATTATATA
37579566 GCACTAAGTGTGCGAGTT-GATTATATA
1 GCACTAAGTGTGCGAGTTCGATTATATA
*
37579593 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGATTATAT-A
37579621 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
37579635 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
27 26 0.41
28 20 0.32
29 17 0.27
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGATTATATA
Found at i:37588201 original size:12 final size:12
Alignment explanation
Indices: 37588186--37588278 Score: 57
Period size: 11 Copynumber: 7.8 Consensus size: 12
37588176 CTCACAAGAC
*
37588186 TTTTCACTTTTT
1 TTTTCAATTTTT
*
37588198 TTTTGAA-TTTT
1 TTTTCAATTTTT
*
37588209 TTTTGAA-TTTT
1 TTTTCAATTTTT
*
37588220 TTTTGAATTTTT
1 TTTTCAATTTTT
*
37588232 TTTTCAAATTTCCTC
1 TTTTC-AATTT--TT
* *
37588247 TTCTC-TTTTTT
1 TTTTCAATTTTT
**
37588258 TTTTTGATTTTT
1 TTTTCAATTTTT
37588270 TTTTCAATT
1 TTTTCAATT
37588279 ACAATATGCT
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
11 26 0.41
12 25 0.39
13 8 0.12
15 5 0.08
ACGTcount: A:0.14, C:0.10, G:0.04, T:0.72
Consensus pattern (12 bp):
TTTTCAATTTTT
Found at i:37588208 original size:11 final size:11
Alignment explanation
Indices: 37588194--37588234 Score: 82
Period size: 11 Copynumber: 3.7 Consensus size: 11
37588184 ACTTTTCACT
37588194 TTTTTTTTGAA
1 TTTTTTTTGAA
37588205 TTTTTTTTGAA
1 TTTTTTTTGAA
37588216 TTTTTTTTGAA
1 TTTTTTTTGAA
37588227 TTTTTTTT
1 TTTTTTTT
37588235 TCAAATTTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:37593538 original size:28 final size:29
Alignment explanation
Indices: 37593473--37593571 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
37593463 CATGAGATTG
* *
37593473 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
37593502 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
37593530 GCACTAAGTGTGCGA-GTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGGTTCGATTATAT-A
37593558 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
37593572 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
27 4 0.06
28 42 0.66
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:37594833 original size:11 final size:11
Alignment explanation
Indices: 37594817--37594841 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37594807 TTGGCCCAAC
37594817 CAAAAATTCTA
1 CAAAAATTCTA
37594828 CAAAAATTCTA
1 CAAAAATTCTA
37594839 CAA
1 CAA
37594842 TATAGATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (11 bp):
CAAAAATTCTA
Found at i:37595964 original size:96 final size:96
Alignment explanation
Indices: 37595796--37596069 Score: 318
Period size: 96 Copynumber: 2.9 Consensus size: 96
37595786 GGTGAATTGT
* * * * * * * *
37595796 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCTATGTCCCAAA
1 CGATGCCATGTCCCAAACATAGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGA
* *
37595861 CAAGGTCTTACACTAGCTCTCGTCT-CAATGC
66 CATGGTCTTACACTAGCTCTCAT-TACAATGC
*** * * * *
37595892 CGATGCCATGTCCCTGGCATGGTCTTACACTGGCTCTTATAAT-GTGGTCGATGCCATGCCCCAG
1 CGATGCCATGTCCCAAACATAGTCTTACACTGGCTCTCAT-ATCGTGGCCGATGCCATGTCCCAG
* * *
37595956 ACATGGTCTTACACTGGCTCTCATTACATTGT
65 ACATGGTCTTACACTAGCTCTCATTACAATGC
* *
37595988 CGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATCGTGGCCAATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATAGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGA
37596053 CATGGTCTTACACTAGC
66 CATGGTCTTACACTAGC
37596070 ACCCATATCA
Statistics
Matches: 147, Mismatches: 28, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
95 3 0.02
96 143 0.97
97 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATAGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCATTACAATGC
Found at i:37596057 original size:144 final size:144
Alignment explanation
Indices: 37595794--37596066 Score: 340
Period size: 144 Copynumber: 1.9 Consensus size: 144
37595784 AGGGTGAATT
** *
37595794 GTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCTATGTCCCA
1 GTCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCA
* * * * *
37595859 AACAAGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCTGGCATGGTCTTACACTG
66 AACAAGGTCTTACACTAGCTCTCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACACTG
37595924 GCTCTTATAATGTG
131 GCTCTTATAATGTG
* * * *
37595938 GTCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCAT-TAC-ATTG-TCGATGCCATGTT
1 GTCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCACATGT-CGA-GGCT-GATGCCATGTC
* *
37596000 CCAAACATA-GTCTTACACTGGCTCTCATATC-GTGGCCAATGCCATGTCCCAGACATGGTCTTA
63 CCAAACA-AGGTCTTACACTAGCTCTCATATCAAT-GCCAATGCCATGTCCCAGACATGGTCTTA
37596063 CACT
126 CACT
37596067 AGCACCCATA
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
143 4 0.04
144 105 0.95
145 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (144 bp):
GTCGATGCCATGCCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCA
AACAAGGTCTTACACTAGCTCTCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACACTG
GCTCTTATAATGTG
Found at i:37596078 original size:48 final size:48
Alignment explanation
Indices: 37595796--37596066 Score: 269
Period size: 48 Copynumber: 5.6 Consensus size: 48
37595786 GGTGAATTGT
* * * *
37595796 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
* * * * * * *
37595844 TGATGCTATGTCCCAAACAAGGTCTTACACTAGCTCTCGTCTCAAT-GC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC-GTGGC
*** * *
37595892 CGATGCCATGTCCCTGGCATGGTCTTACACTGGCTCTTATAAT-GTGGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGC
* * * * *
37595940 CGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCAT-TACATTGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGTGGC
* *
37595988 CGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
* *
37596036 CAATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAAACATGGTCTTACACT
37596067 AGCACCCATA
Statistics
Matches: 178, Mismatches: 39, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 174 0.98
49 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
Found at i:37603832 original size:14 final size:14
Alignment explanation
Indices: 37603813--37603844 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
37603803 ATAATTTATG
*
37603813 AATATTAAAAATAT
1 AATATTAAAAAAAT
37603827 AATATTAAAAAAAT
1 AATATTAAAAAAAT
37603841 AATA
1 AATA
37603845 AAATATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AATATTAAAAAAAT
Found at i:37603872 original size:24 final size:23
Alignment explanation
Indices: 37603796--37603873 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 23
37603786 AAAAACTAAT
*
37603796 AATATATATAATTTATGAATATTA
1 AATATATA-AATTTATAAATATTA
* * * *
37603820 AAAATATAATATTAAAAAAATAATAA
1 AATATATAA-ATT-TATAAAT-ATTA
37603846 AATATATAAATTTATTAAATATTA
1 AATATATAAATTTA-TAAATATTA
37603870 AATA
1 AATA
37603874 AAAATAATAT
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
23 1 0.02
24 18 0.44
25 11 0.27
26 11 0.27
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (23 bp):
AATATATAAATTTATAAATATTA
Found at i:37604470 original size:36 final size:36
Alignment explanation
Indices: 37604430--37604501 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
37604420 TATTTAAAAA
* *
37604430 ATATATTTTT-ATATTTTTGAATTTTAAAGTTTTTTC
1 ATATATTTTTAAT-TTTTTAAATTATAAAGTTTTTTC
*
37604466 ATATATTTTTAATTTTTTAAATTATAATGTTTTTTC
1 ATATATTTTTAATTTTTTAAATTATAAAGTTTTTTC
37604502 TCTAAATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
36 30 0.94
37 2 0.06
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (36 bp):
ATATATTTTTAATTTTTTAAATTATAAAGTTTTTTC
Found at i:37606597 original size:20 final size:19
Alignment explanation
Indices: 37606569--37606609 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
37606559 GACTATTCAA
*
37606569 CTATTTTTTCCTTTTTCGC
1 CTATTTTTTTCTTTTTCGC
37606588 CTATTTTTTTCTTTTTCGC
1 CTATTTTTTTCTTTTTCGC
37606607 CTA
1 CTA
37606610 AGTCAACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.07, C:0.24, G:0.05, T:0.63
Consensus pattern (19 bp):
CTATTTTTTTCTTTTTCGC
Found at i:37614042 original size:780 final size:780
Alignment explanation
Indices: 37612524--37614082 Score: 2643
Period size: 780 Copynumber: 2.0 Consensus size: 780
37612514 ATAATTACGG
*
37612524 GAAAGCTCAGGTAAGTACGATACCTATGTGATAGTTGATACTATGTGTATGAAGCTTGATGAATT
1 GAAAGCTCAAGTAAGTACGATACCTATGTGATAGTTGATACTATGTGTATGAAGCTTGATGAATT
*
37612589 TATATATACATGATAAATGGTTATGGATTGGTATTGAATGTTGATATGAGAATCACTAAGTGTTT
66 TATATATACATGATAAATGGTTATGGATTGGAATTGAATGTTGATATGAGAATCACTAAGTGTTT
37612654 ATTAATTTGTGATTTGTACATTATTGTTAAGTATATTTAGTACGAACATACTAAGCTCTGAAGCT
131 ATTAATTTGTGATTTGTACATTATTGTTAAGTATATTTAGTACGAACATACTAAGCTCTGAAGCT
* *
37612719 TACTATGTGTGTCATTTGTCTATATTTTATAGATCATCGAAGCTAGCTTGGATTCGGGGATCGTC
196 TACTATGTGTGTCATTTGTATACATTTTATAGATCATCGAAGCTAGCTTGGATTCGGGGATCGTC
*
37612784 AGGAAACATCATCACACTATCGAATCAACTTGTTGGTACTTTTGAATCTTGTATATATATGGTAT
261 AGGAAACATCATCACACTATCGAATCAACTTGTTGGTACTTTTGAAGCTTGTATATATATGGTAT
* *
37612849 ATGGCATGTATAGGCTAGTGTAATTTTAAGTATGTTTTGAGTTGTGAATTTAGTCATGAGATGTG
326 ATGGCATATATAGGCTAGTATAATTTTAAGTATGTTTTGAGTTGTGAATTTAGTCATGAGATGTG
* *
37612914 GCTTGTAAATGTTGTTATTTATGAAGATGAATTTGGCTTGATTGATATGTTGTCAAGTAAAAGTA
391 GCTTGTAAATGTTGTTATTTATGAAGATGAATTTGGCTTAATTAATATGTTGTCAAGTAAAAGTA
**
37612979 TGTGATGTATATAATTTCTTCTATGTTGGCTTATTTTGGTATGTTGGCATTAGTCGTTGATATAG
456 TGTGATGTATATAATGCCTTCTATGTTGGCTTATTTTGGTATGTTGGCATTAGTCGTTGATATAG
* *
37613044 TTTAATGATGTGTTTTGTGATATGAAATATATGTTAATGTGATGAATTTTGGTATAACAATTTGA
521 TTTAATGATATGTTTTGTGATACGAAATATATGTTAATGTGATGAATTTTGGTATAACAATTTGA
* *
37613109 TAGGTTTTAAATGTGGAATTAAGTAGTTGAATTGGTTGATGAAAGATGGCATGACATGAGTATGA
586 TAGGTTTTAAATGTGGAATTAAGTAGTTGAATTGGTTAATGAAAGATGCCATGACATGAGTATGA
*
37613174 ATTGGCATGATTTTGATTGCTTAAAGATGTATTGAAATGGTGCTATTTTGGTTGCTTTGTATGCT
651 ATTGGCATGATTTTGATTGCTTAAAGATATATTGAAATGGTGCTATTTTGGTTGCTTTGTATGCT
* * *
37613239 TGAGAGTAGGGTGGCAAATTGGCTTTCCAAATGGCCTATTTTTATCCACACGGGTAGAGACACGA
716 TGAGAGTAGGGTGGAAAATTGGCTTTACAAATGGCCTATTTTTATCCACACGAGTAGAGACACGA
* * *
37613304 GAAAGTTCAAGTATGTATGATACCTATGTGATAGTTGATACTATGTGTATGAAGCTTGATGAATT
1 GAAAGCTCAAGTAAGTACGATACCTATGTGATAGTTGATACTATGTGTATGAAGCTTGATGAATT
*
37613369 TATATATACATGATAAATGGTTATGGATTGGAATTGAATGTTGATATGAGAATTACTAAGTGTTT
66 TATATATACATGATAAATGGTTATGGATTGGAATTGAATGTTGATATGAGAATCACTAAGTGTTT
* * * *
37613434 ATTAATTTGTGATTTGTATATTATTGTTGAGTATATTTAGTACGAACTTACTAAGCTGTGAAGCT
131 ATTAATTTGTGATTTGTACATTATTGTTAAGTATATTTAGTACGAACATACTAAGCTCTGAAGCT
* * * *
37613499 TACTATGTGTGTTATTTGTATACGTTTTATAGATCATCGAAGCTAGCTTGGATTTGGGTATCGTC
196 TACTATGTGTGTCATTTGTATACATTTTATAGATCATCGAAGCTAGCTTGGATTCGGGGATCGTC
* * *
37613564 AGGAAACGTCATCATACTATCGAATGAACTTGTTGGTACTTTTGAAGCTTGTATATATATGGTAT
261 AGGAAACATCATCACACTATCGAATCAACTTGTTGGTACTTTTGAAGCTTGTATATATATGGTAT
** * *
37613629 -TGGCATATATAGGCTAGTATCGTTTTAAGTATGTTTTGAGTTGTGAGTTTATTCATGAGATGTG
326 ATGGCATATATAGGCTAGTATAATTTTAAGTATGTTTTGAGTTGTGAATTTAGTCATGAGATGTG
* *
37613693 GCTTGTAAATGTTGTTGTTTGTGAAGATGAATTTGGCTTAATTAATATGTTGTCAAGTAATAAGT
391 GCTTGTAAATGTTGTTATTTATGAAGATGAATTTGGCTTAATTAATATGTTGTCAAGTAA-AAGT
* *
37613758 ATGTGATGTATATAATGCCTTCTATGTTGGCTTATTTTGGTTTGTTGGCATTAGTTGTTGATATA
455 ATGTGATGTATATAATGCCTTCTATGTTGGCTTATTTTGGTATGTTGGCATTAGTCGTTGATATA
* *
37613823 GTTTAATGGTATGTTTTGTGATACGAAATATATGTTAATGTGATGAATTTTGGTATAATAATTTG
520 GTTTAATGATATGTTTTGTGATACGAAATATATGTTAATGTGATGAATTTTGGTATAACAATTTG
* *
37613888 ATAGGTTTTGAATGTGGAATTAAGTAGTTGAATTGGTTAATGATAGATGCCATGACATGAGTATG
585 ATAGGTTTTAAATGTGGAATTAAGTAGTTGAATTGGTTAATGAAAGATGCCATGACATGAGTATG
* *
37613953 AATTGGCATGATTTTTATTGCTTAAAGATATATTGAAATGGTGCTATTTTGGTTGCTTTGTGTGC
650 AATTGGCATGATTTTGATTGCTTAAAGATATATTGAAATGGTGCTATTTTGGTTGCTTTGTATGC
* * *
37614018 TTGGGAGTAGGGTGGAAAATTGGCTTTACAAATGTCCTATTTTTATCTACACGAGTAGAGACACG
715 TTGAGAGTAGGGTGGAAAATTGGCTTTACAAATGGCCTATTTTTATCCACACGAGTAGAGACACG
37614083 GGTGTGTGTC
Statistics
Matches: 727, Mismatches: 51, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
779 114 0.16
780 613 0.84
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.40
Consensus pattern (780 bp):
GAAAGCTCAAGTAAGTACGATACCTATGTGATAGTTGATACTATGTGTATGAAGCTTGATGAATT
TATATATACATGATAAATGGTTATGGATTGGAATTGAATGTTGATATGAGAATCACTAAGTGTTT
ATTAATTTGTGATTTGTACATTATTGTTAAGTATATTTAGTACGAACATACTAAGCTCTGAAGCT
TACTATGTGTGTCATTTGTATACATTTTATAGATCATCGAAGCTAGCTTGGATTCGGGGATCGTC
AGGAAACATCATCACACTATCGAATCAACTTGTTGGTACTTTTGAAGCTTGTATATATATGGTAT
ATGGCATATATAGGCTAGTATAATTTTAAGTATGTTTTGAGTTGTGAATTTAGTCATGAGATGTG
GCTTGTAAATGTTGTTATTTATGAAGATGAATTTGGCTTAATTAATATGTTGTCAAGTAAAAGTA
TGTGATGTATATAATGCCTTCTATGTTGGCTTATTTTGGTATGTTGGCATTAGTCGTTGATATAG
TTTAATGATATGTTTTGTGATACGAAATATATGTTAATGTGATGAATTTTGGTATAACAATTTGA
TAGGTTTTAAATGTGGAATTAAGTAGTTGAATTGGTTAATGAAAGATGCCATGACATGAGTATGA
ATTGGCATGATTTTGATTGCTTAAAGATATATTGAAATGGTGCTATTTTGGTTGCTTTGTATGCT
TGAGAGTAGGGTGGAAAATTGGCTTTACAAATGGCCTATTTTTATCCACACGAGTAGAGACACGA
Found at i:37621288 original size:46 final size:48
Alignment explanation
Indices: 37621181--37621300 Score: 136
Period size: 48 Copynumber: 2.5 Consensus size: 48
37621171 TGTCTTCGAC
** * * *
37621181 ATGGACTTACATGAATTATTCTTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * * *
37621229 ATGGGCTTCCATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
37621275 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
37621301 CTGTCCTGTC
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
46 26 0.43
47 1 0.02
48 33 0.55
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:37649946 original size:6 final size:6
Alignment explanation
Indices: 37649935--37649969 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
37649925 TAAAATCTGC
37649935 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAA
37649970 GTAGTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:37653098 original size:41 final size:42
Alignment explanation
Indices: 37653050--37653242 Score: 158
Period size: 43 Copynumber: 4.6 Consensus size: 42
37653040 CTGGCACGAA
* * *
37653050 GCCTGCTAGACTTTAAGTCTGA-ACTCA-TTCACCGGCATTTT
1 GCCTGCTAGACTTGAAGCCCGATA-TCATTTCACCGGCATTTT
* *
37653091 GCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTATA
1 GCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATT-TT
* * * * * * *
37653134 ACCTGCTAGGCCTGACGCCCGATATTATCTCACCGGCATTATA
1 GCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATT-TT
* * * * *
37653177 GCCTGCTAGGCCTGAAGCCCGATATTATCTCA-CGGCATTATA
1 GCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATT-TT
* *
37653219 GCCTGCTAGGCCTGAAGCCCGATA
1 GCCTGCTAGACTTGAAGCCCGATA
37653243 ATATTATTCA
Statistics
Matches: 137, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
41 21 0.15
42 47 0.34
43 69 0.50
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (42 bp):
GCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATTTT
Found at i:37653224 original size:85 final size:85
Alignment explanation
Indices: 37653078--37653242 Score: 260
Period size: 85 Copynumber: 1.9 Consensus size: 85
37653068 CTGAACTCAT
* * *
37653078 TCACCGGCATTTTGCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTATAACCTGCTAG
1 TCACCGGCATTTAGCCTGCTAGGCCTGAAGCCCGATATCATCTCACCGGCATTATAACCTGCTAG
*
37653143 GCCTGACGCCCGATATTATC
66 GCCTGAAGCCCGATATTATC
* *
37653163 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTATCTCA-CGGCATTATAGCCTGCTA
1 TCACCGGCATT-TAGCCTGCTAGGCCTGAAGCCCGATATCATCTCACCGGCATTATAACCTGCTA
37653227 GGCCTGAAGCCCGATA
65 GGCCTGAAGCCCGATA
37653243 ATATTATTCA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
85 43 0.59
86 30 0.41
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (85 bp):
TCACCGGCATTTAGCCTGCTAGGCCTGAAGCCCGATATCATCTCACCGGCATTATAACCTGCTAG
GCCTGAAGCCCGATATTATC
Found at i:37653226 original size:42 final size:43
Alignment explanation
Indices: 37653078--37653242 Score: 262
Period size: 43 Copynumber: 3.9 Consensus size: 43
37653068 CTGAACTCAT
* * * *
37653078 TCACCGGCATT-TTGCCTGCTAGGCTTGAAGCCCGATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTATC
* *
37653120 TCACCGGCATTATAACCTGCTAGGCCTGACGCCCGATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTATC
37653163 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTATC
37653206 TCA-CGGCATTATAGCCTGCTAGGCCTGAAGCCCGATA
1 TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATA
37653243 ATATTATTCA
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
42 45 0.39
43 69 0.61
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATTATC
Found at i:37666846 original size:22 final size:22
Alignment explanation
Indices: 37666807--37666848 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
37666797 ATCACTCTTC
* *
37666807 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
37666829 CTCTCCATTTGTTATTCTTT
1 CTCTCCATTTATTATTCTTT
37666849 GCTTCTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:37668134 original size:27 final size:27
Alignment explanation
Indices: 37668091--37668202 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
37668081 AGGAAGCGTC
* *
37668091 CTGGTGGCTATGACACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
37668118 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
37668145 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
37668173 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
37668199 CTGG
1 CTGG
37668203 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:37668197 original size:54 final size:54
Alignment explanation
Indices: 37668091--37668202 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
37668081 AGGAAGCGTC
* *
37668091 CTGGTGGCTATGACACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGACACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
37668145 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGACACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
37668199 CTGG
1 CTGG
37668203 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGACACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:37677594 original size:40 final size:40
Alignment explanation
Indices: 37677535--37677710 Score: 248
Period size: 40 Copynumber: 4.4 Consensus size: 40
37677525 AAACCAAGCA
* * *
37677535 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * **
37677574 CCTTCGAGACTTAGCCCGGATATAATAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37677614 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
37677654 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
37677694 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
37677711 CGTTATCATC
Statistics
Matches: 122, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
39 12 0.10
40 110 0.90
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:37682823 original size:41 final size:40
Alignment explanation
Indices: 37682696--37682832 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
37682686 AAGCCAAGTA
* * * *
37682696 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
*
37682734 CCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
37682774 CCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CAC-AAATG
37682815 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
37682833 ATTATCATCC
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
38 12 0.14
39 18 0.21
40 32 0.38
41 23 0.27
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:37703786 original size:10 final size:11
Alignment explanation
Indices: 37703754--37703786 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
37703744 AGATAGTGTG
37703754 ATGATGCTCCA
1 ATGATGCTCCA
37703765 ATGATGCTCCA
1 ATGATGCTCCA
37703776 ATGAT-CTCCA
1 ATGATGCTCCA
37703786 A
1 A
37703787 CCTTTGCTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 6 0.27
11 16 0.73
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (11 bp):
ATGATGCTCCA
Found at i:37713271 original size:298 final size:299
Alignment explanation
Indices: 37712735--37713335 Score: 1159
Period size: 298 Copynumber: 2.0 Consensus size: 299
37712725 AATTTCGTAG
*
37712735 GTTCAATGGGTATGTTCATACTCATGCTCAATCTCATGCAACTATATGAATGCATCGACCCCAGA
1 GTTCAATGGGTATGTTCATACTCATGCTCAATCTCATGCAAATATATGAATGCATCGACCCCAGA
37712800 TCAATTAAGGCAACAACACATGTCTTAAAAAGAGAAAAAGTACCCCTGATGACATCAGGAGCAGA
66 TCAATTAAGGCAACAACACATGTCTTAAAAAGAGAAAAAGTACCCCTGATGACATCAGGAGCAGA
37712865 GGCTTCCTCTCGAGCGCGTATTGCATACGTTCTTGCCGGGGCTCAAGCCTCTAATTTTGTAATGT
131 GGCTTCCTCTCGAGCGCGTATTGCATACGTTCTTGCCGGGGCTCAAGCCTCTAATTTTGTAATGT
37712930 CTTTGGCCGTAACTCGACTGCCACTAGCACTTCCAGGAAACCTCGGAGGTCTACCTCGTGCAATA
196 CTTTGGCCGTAACTCGACTGCCACTAGCACTTCCAGGAAACCTCGGAGGTCTACCTCGTGCAATA
*
37712995 GGAGTACTCGACTTTGGGGCTATATCCACTCCTTTATC-
261 GGAGTACTCGACTTTAGGGCTATATCCACTCCTTTATCA
37713033 GTTCAATGGGTATGTTCATACTCATGCTCAATCTCATGCAAATATATGAATGCATCGACCCCAGA
1 GTTCAATGGGTATGTTCATACTCATGCTCAATCTCATGCAAATATATGAATGCATCGACCCCAGA
*
37713098 TCAATTAAGGCAACAACACATGTCTTAAAAAGAGAAAAAGTACCCCTGGTGACATCAGGAGCAGA
66 TCAATTAAGGCAACAACACATGTCTTAAAAAGAGAAAAAGTACCCCTGATGACATCAGGAGCAGA
37713163 GGCTTCCTCTCGAGCGCGTATTGCATACGTTCTTGCCGGGGCTCAAGCCTCTAATTTTGTAATGT
131 GGCTTCCTCTCGAGCGCGTATTGCATACGTTCTTGCCGGGGCTCAAGCCTCTAATTTTGTAATGT
*
37713228 CTTTGGTCGTAACTCGACTGCCACTAGCACTTCCAGGAAACCTCGGAGGTCTACCTCGTGCAATA
196 CTTTGGCCGTAACTCGACTGCCACTAGCACTTCCAGGAAACCTCGGAGGTCTACCTCGTGCAATA
37713293 GGAGTACTCGACTTTAGGGCTATATCCACTCCTTTATCA
261 GGAGTACTCGACTTTAGGGCTATATCCACTCCTTTATCA
37713332 GTTC
1 GTTC
37713336 GCTCTGGGCA
Statistics
Matches: 298, Mismatches: 4, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
298 294 0.99
299 4 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (299 bp):
GTTCAATGGGTATGTTCATACTCATGCTCAATCTCATGCAAATATATGAATGCATCGACCCCAGA
TCAATTAAGGCAACAACACATGTCTTAAAAAGAGAAAAAGTACCCCTGATGACATCAGGAGCAGA
GGCTTCCTCTCGAGCGCGTATTGCATACGTTCTTGCCGGGGCTCAAGCCTCTAATTTTGTAATGT
CTTTGGCCGTAACTCGACTGCCACTAGCACTTCCAGGAAACCTCGGAGGTCTACCTCGTGCAATA
GGAGTACTCGACTTTAGGGCTATATCCACTCCTTTATCA
Found at i:37721047 original size:46 final size:45
Alignment explanation
Indices: 37720980--37721142 Score: 177
Period size: 46 Copynumber: 3.5 Consensus size: 45
37720970 AACCCGGCCC
*
37720980 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGTATCCA
* * * *
37721026 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGTA--TCCA
* ** *
37721072 TTTCA-CAAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGTATCCA
37721119 TAAGTGAACTCGGACTCAACTCAA
1 TAAGTGAACTCGGACTCAACTCAA
37721143 TAAGTTCGGA
Statistics
Matches: 94, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
44 4 0.04
45 4 0.04
46 51 0.54
47 29 0.31
48 2 0.02
49 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGTATCCA
Found at i:37721098 original size:93 final size:93
Alignment explanation
Indices: 37720986--37721155 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
37720976 GCCCTAAGTG
* *
37720986 AACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37721050 CGAGTTCGGATGCCTAGTTACATTTCACA
65 CAAGTTCGGATGCCTAGTTACATTTCACA
*
37721079 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
37721144 AAGTTCGGATGC
66 AAGTTCGGATGC
37721156 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
AAGTTCGGATGCCTAGTTACATTTCACA
Found at i:37723712 original size:34 final size:34
Alignment explanation
Indices: 37723637--37723714 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
37723627 AGAAACAGTC
* *
37723637 CAGTATCAGTGTGGGCCTTAGCCTATAGCAATAG
1 CAGTATCAATGTGGGCCTTAGCCCATAGCAATAG
*
37723671 CAATATCAATGTGGGCCTTAGCCCATTA-CAATTA-
1 CAGTATCAATGTGGGCCTTAGCCCA-TAGCAA-TAG
37723705 CAGTATCAAT
1 CAGTATCAAT
37723715 AATGCAACAG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
34 34 0.89
35 4 0.11
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (34 bp):
CAGTATCAATGTGGGCCTTAGCCCATAGCAATAG
Found at i:37725907 original size:40 final size:40
Alignment explanation
Indices: 37725823--37726047 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
37725813 TTGAATGATG
* * * *
37725823 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37725863 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37725903 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37725942 TCCGGGTTAAGTCCCGATA-GCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGTTACTAAA
*
37725982 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37726023 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37726048 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 35 0.21
40 117 0.72
41 11 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37728500 original size:17 final size:18
Alignment explanation
Indices: 37728478--37728511 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37728468 AATTCGGTAC
37728478 AACTCCA-TTATACCTCA
1 AACTCCACTTATACCTCA
*
37728495 AACTCCACTTTTACCTC
1 AACTCCACTTATACCTC
37728512 CCCTTATCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.38, G:0.00, T:0.32
Consensus pattern (18 bp):
AACTCCACTTATACCTCA
Found at i:37734101 original size:27 final size:26
Alignment explanation
Indices: 37734066--37734177 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
37734056 AGCATGGCTG
** *
37734066 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
37734092 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
37734120 CCAGAACAGAAATATGTGGCAAAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
37734147 CCAGATCAGATAATTGTAGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
37734174 CCAG
1 CCAG
37734178 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 16 0.22
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:37740558 original size:27 final size:27
Alignment explanation
Indices: 37740523--37740616 Score: 97
Period size: 27 Copynumber: 3.6 Consensus size: 27
37740513 AGCATGGCTG
*
37740523 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGACAGAGCCA
* *
37740549 CTAGATACAGATAATCGTGTCAGAGCCA
1 CCAGATACAGATAAT-GTGACAGAGCCA
* *
37740577 CCAGA-ACAGAAATATGTGGCAGA-CCA
1 CCAGATACAGATA-ATGTGACAGAGCCA
37740603 CCAGAT-CAGATAAT
1 CCAGATACAGATAAT
37740617 TGTGGCATAG
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
25 2 0.04
26 17 0.30
27 22 0.39
28 16 0.28
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGACAGAGCCA
Found at i:37740612 original size:26 final size:27
Alignment explanation
Indices: 37740523--37740623 Score: 109
Period size: 26 Copynumber: 3.8 Consensus size: 27
37740513 AGCATGGCTG
* *
37740523 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* * *
37740549 CTAGATACAGATAATCGTGTCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
37740577 CCAGAACAGA-AATATGTGGCAGA-CCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
*
37740603 CCAGATCAGATAATTGTGGCA
1 CCAGAACAGATAATTGTGGCA
37740624 TAGCATCTAG
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 26 0.41
27 23 0.37
28 14 0.22
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:37750781 original size:40 final size:40
Alignment explanation
Indices: 37750724--37750941 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
37750714 CGGATGATAA
*
37750724 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
**
37750764 TTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
37750804 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTGCTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* **
37750844 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
37750884 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTT
**
37750924 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37750942 TACTTGGTTG
Statistics
Matches: 160, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.10
40 144 0.90
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:37759004 original size:40 final size:40
Alignment explanation
Indices: 37758948--37759165 Score: 323
Period size: 40 Copynumber: 5.5 Consensus size: 40
37758938 CGGATGATAA
37758948 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
37758988 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
37759028 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTGCTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* **
37759068 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
37759108 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTT
**
37759148 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37759166 TACTTGGTTG
Statistics
Matches: 163, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:37762700 original size:13 final size:13
Alignment explanation
Indices: 37762682--37762709 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37762672 GTGGCGATGG
37762682 AACTCTACAATAC
1 AACTCTACAATAC
37762695 AACTCTACAATAC
1 AACTCTACAATAC
37762708 AA
1 AA
37762710 TCAGGAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (13 bp):
AACTCTACAATAC
Found at i:37773192 original size:24 final size:24
Alignment explanation
Indices: 37773162--37773209 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
37773152 TTGTGATTGA
37773162 CTTTTTGGATGTATTCGACAAAGT
1 CTTTTTGGATGTATTCGACAAAGT
37773186 CTTTTTGGATGTATTCGACAAAGT
1 CTTTTTGGATGTATTCGACAAAGT
37773210 TTTGACAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (24 bp):
CTTTTTGGATGTATTCGACAAAGT
Found at i:37777165 original size:54 final size:54
Alignment explanation
Indices: 37777083--37777192 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
37777073 GTGAAAGGAA
*
37777083 TTGACATTAGCAAAGGTATAGATAGGGGAAGCTCAAGCTCAAATTGTATGATGG
1 TTGACATCAGCAAAGGTATAGATAGGGGAAGCTCAAGCTCAAATTGTATGATGG
* *
37777137 TTGACATCAGCAAAGTTATAGATAGGGGAAGCTCAAGCTCAATTTGTATGATGG
1 TTGACATCAGCAAAGGTATAGATAGGGGAAGCTCAAGCTCAAATTGTATGATGG
37777191 TT
1 TT
37777193 TTCTTTTCTT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (54 bp):
TTGACATCAGCAAAGGTATAGATAGGGGAAGCTCAAGCTCAAATTGTATGATGG
Found at i:37778847 original size:43 final size:44
Alignment explanation
Indices: 37778704--37778860 Score: 205
Period size: 43 Copynumber: 3.6 Consensus size: 44
37778694 TGTGTTATCG
* * * *
37778704 TGTAAGACAACGTCTGGGACGTTGGCATCGATTTGTGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATCTGATTTACA
* * *
37778748 TGTAAGACCATGTTTGGGACATTGGCATCG-TATTTGATTT-CA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGATATCTGATTTACA
*
37778790 TGTAAGACCCTGTCTGGGACAG-TGGCATCGATATCT-ATTTACA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGATATCTGATTTACA
37778833 TGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
37778861 TGTATAAGCT
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
42 33 0.34
43 39 0.40
44 26 0.27
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGATATCTGATTTACA
Found at i:37791988 original size:37 final size:37
Alignment explanation
Indices: 37791929--37792037 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
37791919 AGCTCAGATG
* *
37791929 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
37791966 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
37792003 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
37792038 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:37792236 original size:48 final size:48
Alignment explanation
Indices: 37792178--37792464 Score: 493
Period size: 48 Copynumber: 5.9 Consensus size: 48
37792168 ATATACACAC
*
37792178 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
37792226 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* **
37792274 ATCTCATATATATATTTCACGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
37792324 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
37792372 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
37792420 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
37792465 TACACTTCCA
Statistics
Matches: 229, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
48 184 0.80
50 45 0.20
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:37792466 original size:146 final size:147
Alignment explanation
Indices: 37792163--37792469 Score: 494
Period size: 146 Copynumber: 2.1 Consensus size: 147
37792153 GGTCATTCGG
* *
37792163 CCACAATATACACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
1 CCAC-ATATATACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
*
37792228 CTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCA
65 CTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCA
** *
37792293 CGTTAGCCATTCGGCTTTA
129 CACTAGCCATTCAGCTTTA
* *
37792312 CCAC--ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
1 CCACATATATACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATC
*
37792375 TCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACA
66 TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACA
37792439 CTAGCCATTCAGCTTTA
131 CTAGCCATTCAGCTTTA
37792456 CCACATATATACAC
1 CCACATATATACAC
37792470 TTCCACGTTT
Statistics
Matches: 146, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
144 31 0.21
146 111 0.76
149 4 0.03
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.34
Consensus pattern (147 bp):
CCACATATATACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATC
TCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACA
CTAGCCATTCAGCTTTA
Found at i:37792468 original size:98 final size:96
Alignment explanation
Indices: 37792178--37792464 Score: 502
Period size: 98 Copynumber: 3.0 Consensus size: 96
37792168 ATATACACAC
* *
37792178 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
37792243 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* *
37792274 ATCTCATATATATATTTCACGTTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
37792339 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACACTAGCCATTCGGCTTTACCACATATACAT
37792372 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
37792437 CACTAGCCATTCAGCTTTACCACATATA
66 CACTAGCCATTCGGCTTTACCACATATA
37792465 TACACTTCCA
Statistics
Matches: 180, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
96 89 0.49
98 91 0.51
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (96 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACAT
Found at i:37792532 original size:47 final size:47
Alignment explanation
Indices: 37792481--37792674 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
37792471 TCCACGTTTG
*** *
37792481 TCACATTGGCCATTTTTCCTTATCACATATATGCATGTTCTCATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
37792528 TCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
37792575 TCACATTGGCCATTCGGCCTTATCACACATTTTCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
37792622 TCACATTGGTCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
37792669 TCACAT
1 TCACAT
37792675 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:37792555 original size:22 final size:22
Alignment explanation
Indices: 37792527--37792601 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
37792517 GTTCTCATTC
37792527 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCCATTCAGCCTT
* *
37792549 ATCACATATATG-CATGTTCA-CATT
1 ATCACAT-T-GGCCA--TTCAGCCTT
*
37792573 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
37792596 ATCACA
1 ATCACA
37792602 CATTTTCATG
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
22 16 0.39
23 7 0.17
24 7 0.17
25 11 0.27
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:37792556 original size:94 final size:95
Alignment explanation
Indices: 37792442--37792674 Score: 276
Period size: 94 Copynumber: 2.5 Consensus size: 95
37792432 TTTCACACTA
* * * ** ***
37792442 GCCATTCAGCTTTACCACATATATACACT-TCCACGTTTGTCACATTGGCCATTTTTCCTTATCA
1 GCCATTCAGCCTTATCACATATATACACTGTCCACATTCATCACATTGGCCATTCGGCCTTATCA
* *
37792506 CATATATGCATGTTCTCATTCATCACATTG
66 CACATATGCATGTTCACATTCATCACATTG
* *
37792536 GCCATTCAGCCTTATCACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 GCCATTCAGCCTTATCACATATATACACTGTCCACATTCATCACATTGGCCATTCGGCCTTATCA
* *
37792600 CACATTTTCATGTTCACATTCATCACATTG
66 CACATATGCATGTTCACATTCATCACATTG
* * *
37792630 GTCATTCGGCCTTATCTCATATATACACAT-T-CACATTCATCACAT
1 GCCATTCAGCCTTATCACATATATACAC-TGTCCACATTCATCACAT
37792675 AAAATCCTAA
Statistics
Matches: 118, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
93 1 0.01
94 115 0.97
95 1 0.01
96 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.36
Consensus pattern (95 bp):
GCCATTCAGCCTTATCACATATATACACTGTCCACATTCATCACATTGGCCATTCGGCCTTATCA
CACATATGCATGTTCACATTCATCACATTG
Found at i:37792577 original size:25 final size:25
Alignment explanation
Indices: 37792502--37792580 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
37792492 ATTTTTCCTT
*
37792502 ATCACATATATGCATGTTCTCATTC
1 ATCACATATATGCATGTTCACATTC
* *
37792527 ATCACAT-T-GGCCA--TTCAGCCTT-
1 ATCACATATATG-CATGTTCA-CATTC
37792549 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
37792574 ATCACAT
1 ATCACAT
37792581 TGGCCATTCG
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 10 0.24
23 7 0.17
24 7 0.17
25 18 0.43
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:37796617 original size:46 final size:47
Alignment explanation
Indices: 37796502--37796630 Score: 179
Period size: 46 Copynumber: 2.8 Consensus size: 47
37796492 GTGTGAATAA
* * * *
37796502 TACCTTGATTTGGCTACAGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGAGAGAAGT
* * *
37796549 TACCTTGATTTGGCTACGGGCCATGGTATAGG-ACTCTGGGATAAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGAGAGAAGT
*
37796595 TACCTTGATTTGGCTATAGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACT
37796631 TATCGATTGT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 39 0.54
47 33 0.46
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGAGAGAAGT
Found at i:37808341 original size:42 final size:42
Alignment explanation
Indices: 37808224--37808343 Score: 109
Period size: 43 Copynumber: 2.8 Consensus size: 42
37808214 GTCTAAGACA
* * * *
37808224 TCGTGTAAGACCGTGTCTAGGACACAGGCCTCGATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACAAAGGCATCGATTGAGATT
* * ** *
37808266 TACGTATAAGACCATGTCTGGAACATCGACATCGTATCT-A-ATT
1 T-CGTGTAAGACCATGTCTGGGACAAAGGCATCG-AT-TGAGATT
*
37808309 TCGTGTAAGACCCTGTCTGGGACAAAGGCATCGAT
1 TCGTGTAAGACCATGTCTGGGACAAAGGCATCGAT
37808344 ATTGTACTAC
Statistics
Matches: 61, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
41 2 0.03
42 27 0.44
43 28 0.46
44 3 0.05
45 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACAAAGGCATCGATTGAGATT
Found at i:37808564 original size:22 final size:22
Alignment explanation
Indices: 37808536--37808580 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
37808526 GTGAAATATG
37808536 TGTGGAAATGAAGTATGACATA
1 TGTGGAAATGAAGTATGACATA
37808558 TGTGGAAATGAAGTATGACATA
1 TGTGGAAATGAAGTATGACATA
37808580 T
1 T
37808581 ATGCAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.27, T:0.29
Consensus pattern (22 bp):
TGTGGAAATGAAGTATGACATA
Found at i:37808582 original size:24 final size:24
Alignment explanation
Indices: 37808531--37808583 Score: 83
Period size: 22 Copynumber: 2.3 Consensus size: 24
37808521 TCTCTGTGAA
*
37808531 ATATGTGTGGAAATGAAGTATGAC
1 ATATATGTGGAAATGAAGTATGAC
37808555 --ATATGTGGAAATGAAGTATGAC
1 ATATATGTGGAAATGAAGTATGAC
37808577 ATATATG
1 ATATATG
37808584 CAAATAAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 21 0.81
24 5 0.19
ACGTcount: A:0.40, C:0.04, G:0.26, T:0.30
Consensus pattern (24 bp):
ATATATGTGGAAATGAAGTATGAC
Found at i:37808588 original size:22 final size:22
Alignment explanation
Indices: 37808541--37808588 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
37808531 ATATGTGTGG
* *
37808541 AAATGAAGTATGACATATGTGG
1 AAATGAAGTATGACATATATGC
37808563 AAATGAAGTATGACATATATGC
1 AAATGAAGTATGACATATATGC
37808585 AAAT
1 AAAT
37808589 AAAGGAGCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.27
Consensus pattern (22 bp):
AAATGAAGTATGACATATATGC
Found at i:37810356 original size:19 final size:18
Alignment explanation
Indices: 37810328--37810363 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
37810318 TAAAAAATTA
37810328 AAAGAAAAGAAAAAGAAC
1 AAAGAAAAGAAAAAGAAC
37810346 AAAGAAGAAGAAAAAGAA
1 AAAGAA-AAGAAAAAGAA
37810364 GAGTAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (18 bp):
AAAGAAAAGAAAAAGAAC
Found at i:37826479 original size:49 final size:47
Alignment explanation
Indices: 37826332--37826686 Score: 167
Period size: 49 Copynumber: 7.5 Consensus size: 47
37826322 AGATGCCGAC
* * * *
37826332 GCCATATCCCAAACATGGTCTTACACTGGCTAGCA-TATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTATCATTATC-AGGTCGAT
* ** * * *
37826380 GCCATGTCCCAGACAGGTGTTACACTAACTTTCATATATTGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCAT-TA-TCAGGTCGAT
* * *
37826429 GCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAGTGTTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCAT-TATCAG-GTCGAT
* ** * * *
37826478 GCCATGTCCTAGACAGGTCTTACACTAAC-A-CA-CAACAAG-CTGACAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCATTATCAGGTC-G--AT
* * * *
37826524 G--ATGTCCCAAACAGGTCTTACACTAGCT-TGTATATCTCGAGGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTAT-CAT-TATC-AGGTCGAT
* * * * *
37826571 G-CATGTCCCAGACATGTCTTACACTAGCTCTCATCT-TAATGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCAT-TATCAGGTCGAT
* * * * * * ** *
37826617 -ACATGTCCCAGATATGTCTTACACTGGCTCTTATAATGTGGTCGGT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTATCATTATCAGGTCGAT
*
37826663 G-CATGTCCCAGACATGTCTTACAC
1 GCCATGTCCCAGACAGGTCTTACAC
37826687 CAGCACACAT
Statistics
Matches: 237, Mismatches: 51, Indels: 40
0.72 0.16 0.12
Matches are distributed among these distances:
44 25 0.11
45 3 0.01
46 69 0.29
47 20 0.08
48 45 0.19
49 73 0.31
50 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTATCATTATCAGGTCGAT
Found at i:37826596 original size:48 final size:46
Alignment explanation
Indices: 37826525--37826686 Score: 166
Period size: 46 Copynumber: 3.5 Consensus size: 46
37826515 AGCTGACATG
* *
37826525 ATGTCCCAAACAGGTCTTACACTAGCTTGTATATCTCGAGGTCGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTT-TATATCT-GAGGTCGATGC
* * * * *
37826573 ATGTCCCAGACATGTCTTACACTAGCTCT-CATCTTAATGTCGATAC
1 ATGTCCCAGACATGTCTTACACTAGCTTTATATC-TGAGGTCGATGC
* * * * *
37826619 ATGTCCCAGATATGTCTTACACTGGCTCTTATA-ATGTGGTCGGTGC
1 ATGTCCCAGACATGTCTTACACTAGCT-TTATATCTGAGGTCGATGC
37826665 ATGTCCCAGACATGTCTTACAC
1 ATGTCCCAGACATGTCTTACAC
37826687 CAGCACACAT
Statistics
Matches: 93, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
46 64 0.69
47 3 0.03
48 26 0.28
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (46 bp):
ATGTCCCAGACATGTCTTACACTAGCTTTATATCTGAGGTCGATGC
Found at i:37830452 original size:29 final size:29
Alignment explanation
Indices: 37830418--37830509 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 29
37830408 TAGGCCCAAC
37830418 GGGCCATATAAATGTGATTTGGGCCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
* * *
37830447 GGGCCATATACAGGTGATTTGGGGCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
* * * * * *
37830476 AGGCCTTATGAATATGA-ATGGGCTTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
37830504 GGGCCA
1 GGGCCA
37830510 GATACAGGTA
Statistics
Matches: 49, Mismatches: 14, Indels: 1
0.77 0.22 0.02
Matches are distributed among these distances:
28 12 0.24
29 37 0.76
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.28
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGGGCCTAAT
Found at i:37840620 original size:93 final size:93
Alignment explanation
Indices: 37840508--37840678 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
37840498 GCCCATAAGT
* *
37840508 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37840573 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
37840601 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37840666 CGAGTTCGGATGC
66 CGAGCTCGGATGC
37840679 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:37840675 original size:46 final size:46
Alignment explanation
Indices: 37840500--37840675 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
37840490 TGTAACCCGC
* *
37840500 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
37840546 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
37840592 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
37840639 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
37840676 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:37843073 original size:28 final size:28
Alignment explanation
Indices: 37843040--37843122 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
37843030 GATAACAAGA
*
37843040 AAACCGAATAAAGAAATCCAAGATAGAG
1 AAACCGAATAAAGAAATCCAAGATAAAG
37843068 AAACCGAATAAAGAAATCC-AGAATAAAG
1 AAACCGAATAAAGAAATCCAAG-ATAAAG
* * *
37843096 AGATCCAGGATAAAGAAACCCAAGATA
1 A-AACC-GAATAAAGAAATCCAAGATA
37843123 CGATACTATG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.04
28 25 0.53
29 3 0.06
30 15 0.32
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.11
Consensus pattern (28 bp):
AAACCGAATAAAGAAATCCAAGATAAAG
Found at i:37843093 original size:15 final size:15
Alignment explanation
Indices: 37843036--37843113 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
37843026 CAAAGATAAC
*
37843036 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37843050 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
37843065 GAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
37843078 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37843093 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37843108 AAGAAA
1 AAGAAA
37843114 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
13 8 0.15
14 14 0.26
15 31 0.58
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:37843122 original size:15 final size:15
Alignment explanation
Indices: 37843047--37843122 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
37843037 AGAAAACCGA
37843047 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
37843062 ATAGAGAAA-CCGA-
1 ATAAAGAAATCCAAG
37843075 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
37843089 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37843105 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37843120 ATA
1 ATA
37843123 CGATACTATG
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
13 9 0.18
14 5 0.10
15 34 0.69
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37846155 original size:93 final size:93
Alignment explanation
Indices: 37846043--37846213 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
37846033 GCCCATAAGT
* *
37846043 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37846108 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
37846136 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37846201 CGAGCTCGGATGC
66 CGAGCTCGGATGC
37846214 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:37846210 original size:46 final size:46
Alignment explanation
Indices: 37846035--37846210 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
37846025 TGTAACCCGC
* *
37846035 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
37846081 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
37846127 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
37846174 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
37846211 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:37850709 original size:46 final size:46
Alignment explanation
Indices: 37850554--37850764 Score: 241
Period size: 46 Copynumber: 4.6 Consensus size: 46
37850544 TATTTGTGTA
* * * *
37850554 CCAGTGTAAGACATGTTTGGGACATGCATCAGCCAC-ATTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAG
* * * *
37850600 CCAGTGTAAGACTATGTCTGGGACATGGCATGGGCATTGAGACGAGAG
1 CCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAG
*
37850648 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAG
* *
37850694 CCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAT--GTG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAG
*
37850738 TCAGTGTAAGACCATGTCTGGGACATG
1 CCAGTGTAAGA-CATGTCTGGGACATG
37850765 AGATTGGTAC
Statistics
Matches: 141, Mismatches: 18, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 66 0.47
47 26 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAG
Found at i:37851186 original size:27 final size:27
Alignment explanation
Indices: 37851156--37851212 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
37851146 ATGATGTATG
37851156 AATATGTAACCTTACCAATGTGGTGAA
1 AATATGTAACCTTACCAATGTGGTGAA
37851183 AATATGTAACCTTACCAATGTGGTGAA
1 AATATGTAACCTTACCAATGTGGTGAA
37851210 AAT
1 AAT
37851213 GAATTAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (27 bp):
AATATGTAACCTTACCAATGTGGTGAA
Found at i:37856192 original size:19 final size:20
Alignment explanation
Indices: 37856168--37856214 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
37856158 TTGAAAGTGG
*
37856168 GTACTTATT-TTTACTGTTA
1 GTACTTATTCTTTACCGTTA
37856187 GTACTTATTCTTTACCGTTA
1 GTACTTATTCTTTACCGTTA
37856207 --ACTTATTC
1 GTACTTATTC
37856215 AACTGACGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 8 0.31
19 9 0.35
20 9 0.35
ACGTcount: A:0.21, C:0.17, G:0.09, T:0.53
Consensus pattern (20 bp):
GTACTTATTCTTTACCGTTA
Found at i:37856212 original size:18 final size:19
Alignment explanation
Indices: 37856170--37856214 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
37856160 GAAAGTGGGT
*
37856170 ACTTATT-TTTACTGTTAG
1 ACTTATTCTTTACCGTTAG
37856188 TACTTATTCTTTACCGTTA-
1 -ACTTATTCTTTACCGTTAG
37856207 ACTTATTC
1 ACTTATTC
37856215 AACTGACGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 8 0.33
19 7 0.29
20 9 0.38
ACGTcount: A:0.22, C:0.18, G:0.07, T:0.53
Consensus pattern (19 bp):
ACTTATTCTTTACCGTTAG
Found at i:37861568 original size:60 final size:59
Alignment explanation
Indices: 37861471--37861610 Score: 217
Period size: 60 Copynumber: 2.3 Consensus size: 59
37861461 TAGAGTTTAA
* * *
37861471 ATTTAGTCTGGACTGGTAATTTAGATCCGAGCGCATTAAGGGTGTTTTTCGTTATAAGGG
1 ATTTAGCCT-GACTGGTAATTCAGATCCGAGCGCATTAAGGGTGTTTGTCGTTATAAGGG
*
37861531 ATTTAGCCTAGACTGGTAATTCAGATCCGAGCTCATTAAGGGTGTTTGTCGTTATAAGGG
1 ATTTAGCCT-GACTGGTAATTCAGATCCGAGCGCATTAAGGGTGTTTGTCGTTATAAGGG
37861591 ATTTAGCCTGAACTGGTAAT
1 ATTTAGCCTG-ACTGGTAAT
37861611 CCCAACATCA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
59 1 0.01
60 73 0.99
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (59 bp):
ATTTAGCCTGACTGGTAATTCAGATCCGAGCGCATTAAGGGTGTTTGTCGTTATAAGGG
Found at i:37862712 original size:43 final size:43
Alignment explanation
Indices: 37862650--37862734 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
37862640 AATCAATCAC
37862650 ACAAAAATCGTGCCATAAAATTTCAATCAATTTAAAAGTTTTT
1 ACAAAAATCGTGCCATAAAATTTCAATCAATTTAAAAGTTTTT
**
37862693 ACAAAAATCGTGCTGTAAAATTTCAATCAATTTAAAAGTTTT
1 ACAAAAATCGTGCCATAAAATTTCAATCAATTTAAAAGTTTT
37862735 CTTTTCACAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (43 bp):
ACAAAAATCGTGCCATAAAATTTCAATCAATTTAAAAGTTTTT
Found at i:37864336 original size:78 final size:79
Alignment explanation
Indices: 37864203--37864411 Score: 294
Period size: 78 Copynumber: 2.6 Consensus size: 79
37864193 ACCCCGAATT
* * * * * *
37864203 CAATCACCAACACAAAGCCTACGGGTCTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGA
1 CAAT-ACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGA
37864268 CCTTAAGTCCGGATA
65 CCTTAAGTCCGGATA
* * * * *
37864283 TAGTACCAGCACGAAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGAC
1 CAATACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGAC
37864347 CTTAAGTCCGGATA
66 CTTAAGTCCGGATA
*
37864361 CAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCA
1 CAATACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCA
37864412 TATAGCCTGT
Statistics
Matches: 111, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
78 69 0.62
79 40 0.36
80 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (79 bp):
CAATACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGAC
CTTAAGTCCGGATA
Found at i:37864406 original size:40 final size:40
Alignment explanation
Indices: 37864217--37864440 Score: 240
Period size: 39 Copynumber: 5.7 Consensus size: 40
37864207 CACCAACACA
* * * *
37864217 AAGCCTACGGGTCTTTAAGCCCGGATATAGTACCAGTACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* * * * *
37864257 AAGCCTGC-GGACCTTAAGTCCGGATATAGTACCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* * *
37864296 AAGCCTGCGGATC-TTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* * * *
37864335 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
*
37864374 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCA-T
1 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
* *
37864413 ATAGCCTGTGGGTTTTTAAGCCCGGATA
1 A-AGCCTGCGGGTCTTTAAGCCCGGATA
37864441 CACATCAAAT
Statistics
Matches: 161, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
38 2 0.01
39 101 0.63
40 58 0.36
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (40 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACG
Found at i:37866992 original size:55 final size:55
Alignment explanation
Indices: 37866879--37866993 Score: 122
Period size: 55 Copynumber: 2.1 Consensus size: 55
37866869 CAAAGTTGTA
* * * * *
37866879 CACGGGTAGGCCGCACGGGCGTGCACCATGGCCGTGTTTAAAAGACAGTGTCGTC
1 CACGGGCAGGCAGCACGGGCGTGCACCATGGCCGTGTTGAAAAGACAATGTCGCC
* ** ** * *
37866934 CACGGGCAGGCAGCACGGGTGTGTGCCATGGCCGTGTTGATGAGTCAATGTTGCC
1 CACGGGCAGGCAGCACGGGCGTGCACCATGGCCGTGTTGAAAAGACAATGTCGCC
37866989 CACGG
1 CACGG
37866994 CTGAAGAGCA
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.18, C:0.26, G:0.37, T:0.19
Consensus pattern (55 bp):
CACGGGCAGGCAGCACGGGCGTGCACCATGGCCGTGTTGAAAAGACAATGTCGCC
Found at i:37868521 original size:104 final size:103
Alignment explanation
Indices: 37868342--37868564 Score: 376
Period size: 104 Copynumber: 2.2 Consensus size: 103
37868332 TGTATATAAA
** * *
37868342 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGTGGTGCTATGTGCGTGATCCACCATATCTTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
37868407 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
37868445 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCG-TGATCCACCATATCT
37868509 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
64 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
37868549 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
37868565 GATATCCATT
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
103 27 0.24
104 85 0.75
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:37868629 original size:26 final size:26
Alignment explanation
Indices: 37868594--37868645 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
37868584 AAATGAAAAG
* *
37868594 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
37868620 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
37868646 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:37868632 original size:70 final size:72
Alignment explanation
Indices: 37868483--37868633 Score: 243
Period size: 72 Copynumber: 2.1 Consensus size: 72
37868473 TCATTGGTGG
* *
37868483 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37868548 GAGGGGT
66 GAGGGGT
***
37868555 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37868618 GAGGGGT
66 GAGGGGT
37868625 TGCTAAGTG
1 TGCTAAGTG
37868634 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 20 0.27
71 24 0.32
72 30 0.41
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:37876004 original size:26 final size:26
Alignment explanation
Indices: 37875969--37876019 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
37875959 AATGTGAAAG
*
37875969 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
37875995 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
37876020 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:37876057 original size:103 final size:102
Alignment explanation
Indices: 37875892--37876112 Score: 372
Period size: 103 Copynumber: 2.2 Consensus size: 102
37875882 TGTATATAAA
** * *
37875892 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGTGGTGCTATGTGCGTGATCCACCATATCTTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
37875957 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
*
37875994 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCG-TGATCCACCATATCT
37876058 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
64 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
37876097 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
37876113 GATATCCATT
Statistics
Matches: 112, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
102 27 0.24
103 84 0.75
104 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.32
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:37876164 original size:70 final size:72
Alignment explanation
Indices: 37876032--37876182 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
37876022 TCATTGGTGG
* *
37876032 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37876096 GAGGGGT
66 GAGGGGT
***
37876103 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
37876167 GAGGGGT
66 GAGGGGT
37876174 TGCTAAGTG
1 TGCTAAGTG
37876183 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 24 0.32
71 50 0.68
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:37878606 original size:19 final size:19
Alignment explanation
Indices: 37878584--37878621 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
37878574 TTTTTAATAT
37878584 TATATATATTAT-TTTTTAA
1 TATAT-TATTATATTTTTAA
*
37878603 TATATTTTTATATTTTTAA
1 TATATTATTATATTTTTAA
37878622 AAATTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TATATTATTATATTTTTAA
Found at i:37878608 original size:12 final size:11
Alignment explanation
Indices: 37878556--37878619 Score: 55
Period size: 10 Copynumber: 6.0 Consensus size: 11
37878546 AATTAATGAA
37878556 TTAT-TATTTT
1 TTATATATTTT
*
37878566 TTATAAATTTT
1 TTATATATTTT
*
37878577 TTA-ATATTAT
1 TTATATATTTT
*
37878587 ATATATTATTTT
1 TTATA-TATTTT
37878599 TTA-ATATATTT
1 TTATATAT-TTT
37878610 TTATAT-TTTT
1 TTATATATTTT
37878620 AAAAATTGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
10 17 0.40
11 17 0.40
12 9 0.21
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATATATTTT
Found at i:37878631 original size:18 final size:19
Alignment explanation
Indices: 37878592--37878633 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
37878582 ATTATATATA
* *
37878592 TTAT-TTTTTAATATATTT
1 TTATATTTTTAATAAATTG
37878610 TTATATTTTTAA-AAATTG
1 TTATATTTTTAATAAATTG
37878628 TTATAT
1 TTATAT
37878634 GAGTATATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TTATATTTTTAATAAATTG
Found at i:37882345 original size:238 final size:235
Alignment explanation
Indices: 37881916--37882458 Score: 627
Period size: 238 Copynumber: 2.3 Consensus size: 235
37881906 ATCCTGAATA
* *
37881916 ATTAAACATTATAGTATCATGTAATACTAT-ATTCTTTCCATTATAATCTATATTATC-ATAAT-
1 ATTAAACATTATAATATCATGTAATACTATAATT-TTT-TATTATAATCTATATTA-CAATAATA
* *
37881978 -TACATATAATAGTAGTACATTATATATTATATATTATTTATTATTATACTAGTTGAAATGTGCT
63 GTATATATAATAGTAGTACATTATATATTATATATTATTTATTATTATACTAGTTGAAATATGCT
* * * * *
37882042 CTAAGCCTCTACACTTTCCATACATTTGAAAGTTAACCCTCCTAATATAGTATATAATGCTATAT
128 CCAAGCCCCAACACTTTCCATACATTTGAAAGTTAACCATCCTAATATAGTATATAATACTATAT
* *
37882107 CATATAATATAGTGTATAATATATTAATAGTTTATATATATGAATCAATG
193 CATAT--CATA-T-CAT-ATAT-TT-ATAGTTTATATATATGAATCAATG
*
37882157 ATT-AACATTATAATATCATGTAATACTATAATTTTTTGTTATAATCTATATTACAATAATAGTC
1 ATTAAACATTATAATATCATGTAATACTATAATTTTTTATTATAATCTATATTACAATAATAGT-
37882221 ATATATAATAGTAGTACATTATATA-T-TAT-TT-TTTATTATTATACTAGTTGAAATATGCTCC
65 ATATATAATAGTAGTACATTATATATTATATATTATTTATTATTATACTAGTTGAAATATGCTCC
* * * * * * * * *
37882282 AAGCCCCAATATTTTTCATACATTTGAACGTTAGCCATCTTATTCTATTATATAATACTATATCA
130 AAGCCCCAACACTTTCCATACATTTGAAAGTTAACCATCCTAATATAGTATATAATACTATATCA
* * * *
37882347 TATCATATCATATATTTATAGTTTATGTATTTGTATTAATG
195 TATCATATCATATATTTATAGTTTATATATATGAATCAATG
* * * ** * *
37882388 GTTAAACATTATAATATCATGAAATGCTATACCTTTTTATTATAATCTATGTTATAATAATAGTT
1 ATTAAACATTATAATATCATGTAATACTATAATTTTTTATTATAATCTATATTACAATAATAG-T
37882453 ATATAT
65 ATATAT
37882459 GTAATAATAT
Statistics
Matches: 262, Mismatches: 33, Indels: 23
0.82 0.10 0.07
Matches are distributed among these distances:
231 22 0.08
232 60 0.23
233 5 0.02
234 2 0.01
235 1 0.00
236 3 0.01
238 84 0.32
239 22 0.08
240 31 0.12
241 8 0.03
242 24 0.09
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.44
Consensus pattern (235 bp):
ATTAAACATTATAATATCATGTAATACTATAATTTTTTATTATAATCTATATTACAATAATAGTA
TATATAATAGTAGTACATTATATATTATATATTATTTATTATTATACTAGTTGAAATATGCTCCA
AGCCCCAACACTTTCCATACATTTGAAAGTTAACCATCCTAATATAGTATATAATACTATATCAT
ATCATATCATATATTTATAGTTTATATATATGAATCAATG
Done.