Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 120 of 253
Found at i:37888127 original size:17 final size:17
Alignment explanation
Indices: 37888101--37888135 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
37888091 GAACGAATGT
37888101 ATGCTATAAAGGCTCAA
1 ATGCTATAAAGGCTCAA
*
37888118 ATGCTCTAAAGGCTCAA
1 ATGCTATAAAGGCTCAA
37888135 A
1 A
37888136 ATCTCACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (17 bp):
ATGCTATAAAGGCTCAA
Found at i:37889328 original size:13 final size:13
Alignment explanation
Indices: 37889306--37889343 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
37889296 AGTGTTCGGA
37889306 GGGAAAAAGAAAG
1 GGGAAAAAGAAAG
*
37889319 GGGAAGAAGAAAG
1 GGGAAAAAGAAAG
*
37889332 GGGAAAAGGAAA
1 GGGAAAAAGAAA
37889344 AGAAAAGGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (13 bp):
GGGAAAAAGAAAG
Found at i:37890053 original size:24 final size:24
Alignment explanation
Indices: 37890021--37890069 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
37890011 TAACTCTATG
37890021 TCAATTTCCTTTAAAAATAAAAAC
1 TCAATTTCCTTTAAAAATAAAAAC
37890045 TCAATTTCCTTTAAAAATAAAAAC
1 TCAATTTCCTTTAAAAATAAAAAC
37890069 T
1 T
37890070 AAGTCCAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (24 bp):
TCAATTTCCTTTAAAAATAAAAAC
Found at i:37892239 original size:68 final size:66
Alignment explanation
Indices: 37892167--37892338 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
37892157 CATCATGTGT
* * * *
37892167 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
37892230 TGTAG
62 TGTAG
** * *
37892235 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
37892300 AG
65 AG
* * * *
37892302 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
37892339 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:37892272 original size:64 final size:64
Alignment explanation
Indices: 37892191--37892374 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
37892181 AGACATTATG
* * *
37892191 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
37892255 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
37892320 AA
63 AA
* * *
37892322 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
37892375 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:37896672 original size:68 final size:66
Alignment explanation
Indices: 37896600--37896771 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
37896590 CATCATGTGT
* * * *
37896600 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
37896663 TGTAG
62 TGTAG
** * *
37896668 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
37896733 AG
65 AG
* * * *
37896735 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
37896772 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:37896705 original size:64 final size:64
Alignment explanation
Indices: 37896624--37896807 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
37896614 AGACATTATG
* * *
37896624 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
37896688 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
37896753 AA
63 AA
* * *
37896755 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
37896808 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:37899518 original size:37 final size:37
Alignment explanation
Indices: 37899475--37899646 Score: 184
Period size: 37 Copynumber: 4.9 Consensus size: 37
37899465 GCTCGGACGT
* **
37899475 AATCTCCATACGAAGTTGTCGGGTCTTACCCGGACAA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAA
* *
37899512 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAA
*
37899549 AATCTCCACAC---GT-A----GTC--ACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAA
* *
37899576 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAA
* *
37899613 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGA
37899647 ATATATTTCC
Statistics
Matches: 119, Mismatches: 6, Indels: 20
0.82 0.04 0.14
Matches are distributed among these distances:
27 21 0.18
29 3 0.03
30 2 0.02
31 1 0.01
33 1 0.01
34 2 0.02
35 3 0.03
37 86 0.72
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAA
Found at i:37899577 original size:27 final size:27
Alignment explanation
Indices: 37899539--37899593 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
37899529 ATCGGGTCTT
37899539 ACCCGGACATAATCTCCACACGTAGTC
1 ACCCGGACATAATCTCCACACGTAGTC
37899566 ACCCGGACATAATCTCCACACGTAGTC
1 ACCCGGACATAATCTCCACACGTAGTC
37899593 A
1 A
37899594 TCGGGTCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.36, G:0.15, T:0.18
Consensus pattern (27 bp):
ACCCGGACATAATCTCCACACGTAGTC
Found at i:37899603 original size:64 final size:64
Alignment explanation
Indices: 37899502--37899630 Score: 249
Period size: 64 Copynumber: 2.0 Consensus size: 64
37899492 GTCGGGTCTT
37899502 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
*
37899566 ACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
37899630 A
1 A
37899631 TCGGGTCTCA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (64 bp):
ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
Found at i:37899861 original size:47 final size:47
Alignment explanation
Indices: 37899809--37900237 Score: 152
Period size: 48 Copynumber: 9.0 Consensus size: 47
37899799 TTTCACACTA
* ** *
37899809 GCCATTCGGCTTTACCGCATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCTTTACCACATATATGCATGCTCACATTCACCACATTG
* * * * *
37899856 GCCATTCGGCCTTATCACATAAATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCTTTACCACATATATGCATGCTCACATTCACCACATTG
* * * *
37899903 GCCATT-GGCTTTACCACATATA--CATATCACACATAT-ATTTCACATTA
1 GCCATTCGGCTTTACCACATATATGCAT-GCTCACAT-TCA--CCACATTG
* ** *
37899950 GCCATTCGGCTTTACCACATATA--CATATCTCATACATAT-TTCACATTC
1 GCCATTCGGCTTTACCACATATATGCAT-GCTC--ACAT-TCACCACATTG
* * * * *
37899998 GCCATTTGGCTTTACCACATATA--CATACCACACATAT-ATTTCACATTA
1 GCCATTCGGCTTTACCACATATATGCAT-GCTCACAT-TCA--CCACATTG
* ** *
37900046 GCCATTCGGCTTTACCACATATA--CATATCTCATACATAT-TTCACATTC
1 GCCATTCGGCTTTACCACATATATGCAT-GCTC--ACAT-TCACCACATTG
* * * *
37900094 GCCATTCGGCTTTACCACATATA--CATATCACACATAT-ATTTCACATTA
1 GCCATTCGGCTTTACCACATATATGCAT-GCTCACAT-TCA--CCACATTG
* * ** * *
37900142 GCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTG
1 GCCATTCGG-CTT-T-AC-CACATATATGCATGCTCACATTCACCACATTG
* * * * * *
37900193 GCCATTCGGCCTTATCACACATATGCATGTTCACATCCATCACAT
1 GCCATTCGGCTTTACCACATATATGCATGCTCACATTCACCACAT
37900238 AAAATCCTAA
Statistics
Matches: 316, Mismatches: 46, Indels: 40
0.79 0.11 0.10
Matches are distributed among these distances:
44 3 0.01
45 7 0.02
46 26 0.08
47 81 0.26
48 147 0.47
49 4 0.01
50 15 0.05
51 18 0.06
52 8 0.03
53 6 0.02
54 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCTTTACCACATATATGCATGCTCACATTCACCACATTG
Found at i:37899969 original size:48 final size:48
Alignment explanation
Indices: 37899895--37900166 Score: 411
Period size: 48 Copynumber: 5.6 Consensus size: 48
37899885 CTCACATTTA
*
37899895 TCACATTGGCCATT-GGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
* * *
37899942 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
* * *
37899990 TCACATTCGCCATTTGGCTTTACCACATATACATACCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
* * *
37900038 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
*
37900086 TCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATT
1 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
*
37900134 TCACATTAGCCATTCGGCCTTATCACACATATA
1 TCACATTAGCCATTCGGCTTTA-C-CACATATA
37900167 TATACGGGTT
Statistics
Matches: 200, Mismatches: 22, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
47 13 0.06
48 178 0.89
49 1 0.00
50 8 0.04
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATT
Found at i:37900024 original size:96 final size:96
Alignment explanation
Indices: 37899895--37900166 Score: 483
Period size: 96 Copynumber: 2.8 Consensus size: 96
37899885 CTCACATTTA
*
37899895 TCACATTGGCCA-TTGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGG
1 TCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGG
37899959 CTTTACCACATATACATATCTCATACATATT
66 CTTTACCACATATACATATCTCATACATATT
*
37899990 TCACATTCGCCATTTGGCTTTACCACATATACATACCACACATATATTTCACATTAGCCATTCGG
1 TCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGG
37900055 CTTTACCACATATACATATCTCATACATATT
66 CTTTACCACATATACATATCTCATACATATT
*
37900086 TCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGG
1 TCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGG
*
37900151 CCTTATCACACATATA
66 CTTTA-C-CACATATA
37900167 TATACGGGTT
Statistics
Matches: 169, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
95 11 0.07
96 149 0.88
97 1 0.01
98 8 0.05
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (96 bp):
TCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGG
CTTTACCACATATACATATCTCATACATATT
Found at i:37900087 original size:144 final size:145
Alignment explanation
Indices: 37899849--37900171 Score: 431
Period size: 144 Copynumber: 2.3 Consensus size: 145
37899839 TCATATTCAC
* * * * * * * *
37899849 CACATTGGCCATTCGGCCTTATCACATAAATGCAT-GCTCACAT-T-TATCACATTGGCCATTGG
1 CACATTAGCCATTCGGCCTTATCACACATATACATACCACACATATATTTCACATTAGCCATTGG
*
37899911 CTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
66 CTTTACCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
37899976 ATCTCATACATATTT
131 ATCACACACATATTT
* * *
37899991 CACATTCGCCATTTGGCTTTA-C-CACATATACATACCACACATATATTTCACATTAGCCATTCG
1 CACATTAGCCATTCGGCCTTATCACACATATACATACCACACATATATTTCACATTAGCCATT-G
* * *
37900054 GCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTTACCACATATACA
65 GCTTTACCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTTACCACATATACA
*
37900119 TATCACACATATATTT
130 TATCACACACATATTT
*
37900135 CACATTAGCCATTCGGCCTTATCACACATATATATAC
1 CACATTAGCCATTCGGCCTTATCACACATATACATAC
37900172 GGGTTCACAT
Statistics
Matches: 154, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
140 8 0.05
141 7 0.05
142 19 0.12
143 14 0.09
144 93 0.60
145 1 0.01
146 12 0.08
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (145 bp):
CACATTAGCCATTCGGCCTTATCACACATATACATACCACACATATATTTCACATTAGCCATTGG
CTTTACCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
ATCACACACATATTT
Found at i:37912450 original size:40 final size:40
Alignment explanation
Indices: 37912215--37912469 Score: 358
Period size: 40 Copynumber: 6.4 Consensus size: 40
37912205 GATGATAACG
* *
37912215 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
37912255 GTGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
37912294 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
37912334 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
37912374 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
37912414 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
37912454 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
37912470 TACTTGGTTT
Statistics
Matches: 198, Mismatches: 14, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
39 52 0.26
40 145 0.73
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:37918323 original size:47 final size:47
Alignment explanation
Indices: 37918254--37918759 Score: 295
Period size: 47 Copynumber: 10.7 Consensus size: 47
37918244 TTTGTGTGCA
*
37918254 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCCACATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCT
* * * *
37918300 AGTGTAAGACCATGTCTGGGACATGGAATCAGCA-ATGA-GACAAGAACT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATG---AGAGCT
* * *
37918348 AGTATAAGA-CATGTCTAGGACAT-GCATCGTGCACATTATGAGAGCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCACATTATGAGAGCT
* *
37918394 AGTGTAAGACCATGTCTGGGACATGGCATCGG--TATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCT
* *
37918442 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGACTCGA-GATGTA-AGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-ATTATG-AGAGCT
* * ** * *
37918488 AGTGTAAGA-CATGTC-GGGACAT-GCGTCGGCTGCAAGATGTG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACATTATGAGAGCT
* * * *
37918531 AGTGTAAGACCGTGTCTAGGACATGGCATCGGCAC-GTAT-AGAGGTGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGA-G-CT
* * * * * *
37918578 CAATGTAAGACCATGTCTGGGACATGACATTGGTATAGATATGTGAGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGG--CACAT-TATGAGAGCT
* * * * *
37918629 AGTGTAAGACCATGTCAGGGACATGGCGTCAGCCTCGATT-TCGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCAC-ATTAT-GAGAGCT
*
37918677 CAGTGTAAGACCATGTCTAGGACATGGCATC-G-AC-TTGATGGATGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT-AT-GA-GAGCT
* *
37918725 AGTGTAAAACCATGTCTAGGACATGGCATCGGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
37918760 TATACCTTAT
Statistics
Matches: 355, Mismatches: 61, Indels: 85
0.71 0.12 0.17
Matches are distributed among these distances:
43 10 0.03
44 12 0.03
45 29 0.08
46 67 0.19
47 91 0.26
48 74 0.21
49 35 0.10
50 29 0.08
51 2 0.01
52 3 0.01
53 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGAGCT
Found at i:37918492 original size:94 final size:93
Alignment explanation
Indices: 37918254--37918756 Score: 339
Period size: 94 Copynumber: 5.3 Consensus size: 93
37918244 TTTGTGTGCA
* *
37918254 AGTGTAAGA-CATGTCT-GAGACAT-GCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTAG-GACATGGCATCGGACTCA-TATGAGAGCTAGTGTAAGACCATGTC
* * * * *
37918316 TGGGACATGGAATCAGCAATGAGACAAGAACT
64 TGGGACATGGCATC-GGATTGAGA-GAGAGCT
* * *
37918348 AGTATAAGA-CATGTCTAGGACAT-GCATCGTG-CACATTATGAGAGCGAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCG-GACTCA-TATGAGAGCTAGTGTAAGACCATGTC
37918410 TGGGACATGGCATCGGTATTGAGACGAGAGCT
64 TGGGACATGGCATCGG-ATTGAGA-GAGAGCT
* *
37918442 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGACTCGAGATGTA-AGCTAGTGTAAGA-CATGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGACTC-ATATG-AGAGCTAGTGTAAGACCATGTC
* * *
37918503 -GGGACAT-GCGTCGG-CTGCA-AGATGTG-T
64 TGGGACATGGCATCGGATTG-AGAGA-GAGCT
* * *
37918530 CAGTGTAAGACCGTGTCTAGGACATGGCATCGGCACGT-ATA-GAG-GTGTCAATGTAAGACCAT
1 -AGTGTAAGACCATGTCTAGGACATGGCATCGG-AC-TCATATGAGAG-CT-AGTGTAAGACCAT
* * * *
37918592 GTCTGGGACATGACATTGGTATAGATATGTGAGAGCT
61 GTCTGGGACATGGCATCGG-ATTG--A-GAGAGAGCT
* * * * *
37918629 AGTGTAAGACCATGTC-AGGGACATGGCGTCAGCCTCGATTTCGATAG-TCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTA-GGACATGGCATCGGACTC-ATAT-GAGAGCT-AGTGTAAGACCATG
*
37918692 TCTAGGACATGGCATC-GACTTGATG-GATGAGCT
62 TCTGGGACATGGCATCGGA-TTGA-GAGA-GAGCT
*
37918725 AGTGTAAAACCATGTCTAGGACATGGCATCGG
1 AGTGTAAGACCATGTCTAGGACATGGCATCGG
37918757 CACTATACCT
Statistics
Matches: 333, Mismatches: 42, Indels: 66
0.76 0.10 0.15
Matches are distributed among these distances:
88 3 0.01
89 16 0.05
90 15 0.05
91 23 0.07
92 15 0.05
93 16 0.05
94 129 0.39
95 6 0.02
96 37 0.11
97 5 0.02
98 34 0.10
99 31 0.09
100 2 0.01
101 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGACTCATATGAGAGCTAGTGTAAGACCATGTCTG
GGACATGGCATCGGATTGAGAGAGAGCT
Found at i:37918526 original size:45 final size:46
Alignment explanation
Indices: 37918254--37918562 Score: 183
Period size: 46 Copynumber: 6.7 Consensus size: 46
37918244 TTTGTGTGCA
* * * **
37918254 AGTGTAAGACATGTCTGAGACATGCATCGGCCACATTATG-AGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGACTCAAGATGTA-AGCT
* * * * * *
37918300 AGTGTAAGACCATGTCTGGGACATGGAATCAGCAATGAGACAAG-AA-CT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GGACTCA-AGATGTAAGCT
* * * ** *
37918348 AGTATAAGACATGTCTAGGACATGCATCGTG-CACATTATG-AGAGCG
1 AGTGTAAGACATGTCTGGGACATGCATCG-GACTCAAGATGTA-AGCT
** *
37918394 AGTGTAAGACCATGTCTGGGACATGGCATCGGTA-TTGAGACG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-ACTCAAGATGTA-AGCT
*
37918442 AGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATGTAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGACTCAAGATGTAAGCT
*
37918488 AGTGTAAGACATGTC-GGGACATGCGTCGG-CTGCAAGATGT--G-T
1 AGTGTAAGACATGTCTGGGACATGCATCGGACT-CAAGATGTAAGCT
* *
37918530 CAGTGTAAGACCGTGTCTAGGACATGGCATCGG
1 -AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
37918563 CACGTATAGA
Statistics
Matches: 208, Mismatches: 37, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.00
43 10 0.05
44 10 0.05
45 30 0.14
46 60 0.29
47 55 0.26
48 36 0.17
49 3 0.01
50 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACTCAAGATGTAAGCT
Found at i:37918553 original size:137 final size:145
Alignment explanation
Indices: 37918394--37918756 Score: 382
Period size: 137 Copynumber: 2.5 Consensus size: 145
37918384 TATGAGAGCG
*
37918394 AGTGTAAGACCATGTCTGGGACATGGCATCGGTA-TTGAGACGAGAGCTAGTGTAAGA-CATGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGG-ACTTGAGA-GAGAGCTAGTGTAAGACCATGTC
*
37918457 TGGGACATGCATCGG-ACTCGAGATGT-A-AGCTAGTGTAAGA-CATGTC-GGGACAT-GCGTC-
64 TGGGACATGCATCGGTA-TAGAGATGTGAGAGCTAGTGTAAGACCATGTCAGGGACATGGCGTCA
*
37918515 GGCTGCAAGAT-G-T-GTC
128 GCCT-CAAGATCGATAGTC
* * *
37918531 AGTGTAAGACCGTGTCTAGGACATGGCATCGGCACGTAT-AGAG-GTG-TCAATGTAAGACCATG
1 AGTGTAAGACCATGTCTAGGACATGGCATCGG-AC-T-TGAGAGAGAGCT-AGTGTAAGACCATG
* *
37918593 TCTGGGACATGACATTGGTATAGATATGTGAGAGCTAGTGTAAGACCATGTCAGGGACATGGCGT
62 TCTGGGACATG-CATCGGTATAGAGATGTGAGAGCTAGTGTAAGACCATGTCAGGGACATGGCGT
* **
37918658 CAGCCTCGATTTCGATAGTC
126 CAGCCTCAAGATCGATAGTC
*
37918678 AGTGTAAGACCATGTCTAGGACATGGCATC-GACTTGATG-GATGAGCTAGTGTAAAACCATGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGACTTGA-GAGA-GAGCTAGTGTAAGACCATGTC
*
37918741 TAGGACATGGCATCGG
64 TGGGACAT-GCATCGG
37918757 CACTATACCT
Statistics
Matches: 186, Mismatches: 18, Indels: 35
0.78 0.08 0.15
Matches are distributed among these distances:
136 1 0.01
137 41 0.22
138 16 0.09
139 16 0.09
140 3 0.02
141 13 0.07
142 6 0.03
143 8 0.04
144 11 0.06
145 7 0.04
146 30 0.16
147 34 0.18
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (145 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGACTTGAGAGAGAGCTAGTGTAAGACCATGTCTG
GGACATGCATCGGTATAGAGATGTGAGAGCTAGTGTAAGACCATGTCAGGGACATGGCGTCAGCC
TCAAGATCGATAGTC
Found at i:37918638 original size:98 final size:94
Alignment explanation
Indices: 37918531--37918763 Score: 233
Period size: 96 Copynumber: 2.4 Consensus size: 94
37918521 AAGATGTGTC
*
37918531 AGTGTAAGACCGTGTCTAGGACATGGCATCGGCACGTATAGAGGT-GTCAATGTAAGACCATGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACGTATAGA--TAGTCAATGTAAGACCATGTC
* *
37918595 TGGGACATGACATTGGTA-TAGATATGTGA-GAGCT
64 TAGGACATGACA-TCG-ACTAG--ATG-GATGAGCT
* * * * * *
37918629 AGTGTAAGACCATGTC-AGGGACATGGCGTCAGCCTCGATTTCGATAGTCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTA-GGACATGGCATC-GGCACG-TATAGATAGTCAATGTAAGACCATGT
* *
37918693 CTAGGACATGGCATCGACTTGATGGATGAGCT
63 CTAGGACATGACATCGACTAGATGGATGAGCT
*
37918725 AGTGTAAAACCATGTCTAGGACATGGCATCGGCAC-TATA
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACGTATA
37918764 CCTTATGTTT
Statistics
Matches: 111, Mismatches: 17, Indels: 19
0.76 0.12 0.13
Matches are distributed among these distances:
93 2 0.02
95 5 0.05
96 34 0.31
97 3 0.03
98 31 0.28
99 32 0.29
100 4 0.04
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCACGTATAGATAGTCAATGTAAGACCATGTCTA
GGACATGACATCGACTAGATGGATGAGCT
Found at i:37926168 original size:94 final size:94
Alignment explanation
Indices: 37926024--37926272 Score: 324
Period size: 94 Copynumber: 2.7 Consensus size: 94
37926014 ACATACCTGG
* * * *
37926024 GACATGCATCGGCCACATTATGAGAGCCAGTGTAAGGCCATGTCTGGGACATGGTATCGGCATTG
1 GACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTG
*
37926089 AGACGAGAGCTAGTATAGGACATGTCCGA
66 AGACGAGAGCTAGTATAAGACATGTCCGA
* * *
37926118 GACATGCATCGGGCACATTATGAGAGCGAGTGTAAGATCATGTCTAGGACATGGCATCGACATTG
1 GACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTG
* * *
37926183 AGACGAGAGCTAGTGTAAGACATGTCTGG
66 AGACGAGAGCTAGTATAAGACATGTCCGA
* * * *
37926212 GACATGCATCAGCCTCGA-GATGTA-AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACA
1 GACATGCATCGGCCAC-ATTATG-AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACA
37926273 CATATAGAGG
Statistics
Matches: 136, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
93 23 0.17
94 111 0.82
95 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (94 bp):
GACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTG
AGACGAGAGCTAGTATAAGACATGTCCGA
Found at i:37926268 original size:141 final size:140
Alignment explanation
Indices: 37926045--37926361 Score: 311
Period size: 141 Copynumber: 2.2 Consensus size: 140
37926035 GCCACATTAT
* * * * * * *
37926045 GAGAGCCAGTGTAAGGCCATGTCTGGGACATGGTATCGGCATTGAGACGAGAGCTAGTATAGGAC
1 GAGAGCTAGTGTAA-GACATGTCTGGGACAT-GCATCAGCATCGAGACGAGAGCCAGTATAAGAC
* **
37926110 ATGTCCGAGACATGCATCGGGCACAT-TATGAGAGCG-AGTGTAAGATCATGTCTAGGACATGGC
64 ATGTCCGAGACATGCATC-GACACATATA-GAG-GCGCAGTGTAAGAAAATGTCTAGGACATGGC
37926173 ATCGACATTG-AGA-C
126 ATCGACA-TGAAGAGC
* * *
37926187 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA-AGCCAGTGTAAGACA
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACG-AGAGCCAGTATAAGACA
* * * *
37926251 TGTCTGGGACATGGCATCGACACATATAGAGGTGTCAGTGTAAGAAAATGTCTGGGACATGGCAT
65 TGTCCGAGACAT-GCATCGACACATATAGAGGCG-CAGTGTAAGAAAATGTCTAGGACATGGCAT
* * *
37926316 CGGCATGAATATGT
128 CGACATGAAGA-GC
*
37926330 GAGATCTAGTGTAAGACCATGTCTGGGACATG
1 GAGAGCTAGTGTAAGA-CATGTCTGGGACATG
37926362 GAATCGGCAC
Statistics
Matches: 145, Mismatches: 21, Indels: 16
0.80 0.12 0.09
Matches are distributed among these distances:
139 2 0.01
140 45 0.31
141 55 0.38
142 13 0.09
143 15 0.10
144 15 0.10
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.22
Consensus pattern (140 bp):
GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACGAGAGCCAGTATAAGACAT
GTCCGAGACATGCATCGACACATATAGAGGCGCAGTGTAAGAAAATGTCTAGGACATGGCATCGA
CATGAAGAGC
Found at i:37926291 original size:93 final size:99
Alignment explanation
Indices: 37926044--37926375 Score: 261
Period size: 94 Copynumber: 3.5 Consensus size: 99
37926034 GGCCACATTA
* * * *
37926044 TGAGAGCCAGTGTAAGGCCATGTCTGGGACATGGTATCG-GCAT-TGAGACGAGAGCTAGTAT-A
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGCACATAT-AGACGAGAGCTAGTGTAA
* * * * * * * *
37926106 GGACATGTCCGAGACAT-GCATCGGGCA--CA-TTA
65 GAAAATGTCTGGGACATGGCATC-AGCATGAAGATG
* * *
37926138 TGAGAGCGAGTGTAAGATCATGTCTAGGACATGGCATCG-ACAT-TGAGACGAGAGCTAGTGTAA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGCACATAT-AGACGAGAGCTAGTGTAA
* *
37926201 G-ACATGTCTGGGACAT-GCATCAGCCTCG-AGATG
65 GAAAATGTCTGGGACATGGCATCAGCAT-GAAGATG
*
37926234 T-A-AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACACATATAGA-G-GTG-TCAGTGTA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG-CACATATAGACGAGAGCT-AGTGTA
* *
37926293 AGAAAATGTCTGGGACATGGCATCGGCATGAATATG
64 AGAAAATGTCTGGGACATGGCATCAGCATGAAGATG
* * *
37926329 TGAGATCTAGTGTAAGACCATGTCTGGGACATGGAATCGGCAC-TATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCACATATA
37926376 CCTTATGTTT
Statistics
Matches: 199, Mismatches: 23, Indels: 29
0.79 0.09 0.12
Matches are distributed among these distances:
92 1 0.01
93 32 0.16
94 100 0.50
95 24 0.12
96 4 0.02
97 15 0.08
98 22 0.11
99 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (99 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGCACATATAGACGAGAGCTAGTGTAAG
AAAATGTCTGGGACATGGCATCAGCATGAAGATG
Found at i:37926358 original size:50 final size:47
Alignment explanation
Indices: 37926004--37926370 Score: 229
Period size: 47 Copynumber: 7.7 Consensus size: 47
37925994 TCTTTGTCTA
** * *
37926004 CTAGTGTAAGACATACCTGGGACAT-GCATCGGCCA-CA-TTATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGGCATCGG-CATGAGAT-TGAGAG
* * * *
37926050 CCAGTGTAAGGCCATGTCTGGGACATGGTATCGGCATTGAGA-CGAGAG
1 CTAGTGTAA-GACATGTCTGGGACATGGCATCGGCA-TGAGATTGAGAG
* * * * * *
37926098 CTAGTATAGGACATGTCCGAGACAT-GCATCGGGCA-CA-TTATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGGCATC-GGCATGAGAT-TGAGAG
* * * *
37926144 CGAGTGTAAGATCATGTCTAGGACATGGCATCGACATTGAGA-CGAGAG
1 CTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCA-TGAGATTGAGAG
* *
37926192 CTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGAGA-TGTA-AG
1 CTAGTGTAAGACATGTCTGGGACATGGCATCGGCAT-GAGATTG-AGAG
* * * * *
37926238 CCAGTGTAAGACATGTCTGGGACATGGCATCGACA-CATATAGAG-G
1 CTAGTGTAAGACATGTCTGGGACATGGCATCGGCATGAGATTGAGAG
* * * *
37926283 TGTCAGTGTAAGAAAATGTCTGGGACATGGCATCGGCATGAATATGTGAGAT
1 -CT-AGTGTAAG-ACATGTCTGGGACATGGCATCGGCATG-AGAT-TGAGAG
*
37926335 CTAGTGTAAGACCATGTCTGGGACATGGAATCGGCA
1 CTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
37926371 CTATACCTTA
Statistics
Matches: 244, Mismatches: 51, Indels: 48
0.71 0.15 0.14
Matches are distributed among these distances:
45 6 0.02
46 63 0.26
47 74 0.30
48 60 0.25
49 3 0.01
50 34 0.14
51 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.22
Consensus pattern (47 bp):
CTAGTGTAAGACATGTCTGGGACATGGCATCGGCATGAGATTGAGAG
Found at i:37930013 original size:19 final size:19
Alignment explanation
Indices: 37929976--37930018 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
37929966 TGAAATTCGT
37929976 TTTTCTCTAAAAAGAAACGG
1 TTTTCTCTAAAAAGAAAC-G
37929996 TTTTC-CTAAAATAG-AACG
1 TTTTCTCTAAAA-AGAAACG
37930014 TTTTC
1 TTTTC
37930019 AAAAGCTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.27
19 9 0.41
20 7 0.32
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (19 bp):
TTTTCTCTAAAAAGAAACG
Found at i:37934175 original size:81 final size:82
Alignment explanation
Indices: 37934032--37934182 Score: 182
Period size: 81 Copynumber: 1.9 Consensus size: 82
37934022 GCATACTAAC
* * * * * * * *
37934032 TTGCATTAATAAGGTGTAAGGGTCACACGACCAAGCCACATGCCCGTGTGCTAGGCTGTGTGAAT
1 TTGCATTAATAAGGTGCAAGGGACACACGACCAAACCAAACGCCCATGTGCTAGGCTATGTGAAC
37934097 AATTTGAGCATTCTGTT
66 AATTTGAGCATTCTGTT
*
37934114 TTGCAATTTATAAGGTGCAAGGGACACA-G-CCAAACCAAACGCCCATGTGCTAGGGC-ATGTGA
1 TTGC-ATTAATAAGGTGCAAGGGACACACGACCAAACCAAACGCCCATGTGCTA-GGCTATGTGA
37934176 ACAATTT
64 ACAATTT
37934183 TGAGTATACT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
81 30 0.52
82 8 0.14
83 20 0.34
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (82 bp):
TTGCATTAATAAGGTGCAAGGGACACACGACCAAACCAAACGCCCATGTGCTAGGCTATGTGAAC
AATTTGAGCATTCTGTT
Found at i:37935262 original size:25 final size:26
Alignment explanation
Indices: 37935223--37935276 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
37935213 CCCATACGAG
* * *
37935223 CATGTAATTGGGAAGATCTTTTGAGC
1 CATGTAATTGAGAAGATCATGTGAGC
*
37935249 CATGTAA-TGAGAAGCTCATGTGAGC
1 CATGTAATTGAGAAGATCATGTGAGC
37935274 CAT
1 CAT
37935277 ATAACGGGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CATGTAATTGAGAAGATCATGTGAGC
Found at i:37935287 original size:25 final size:25
Alignment explanation
Indices: 37935245--37935446 Score: 98
Period size: 24 Copynumber: 8.2 Consensus size: 25
37935235 AAGATCTTTT
* * * *
37935245 GAGCCATGTAATGAGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGA
* *
37935270 GAGCCATATAACGGGAAGCTCTTGC
1 GAGCCATATAACGGGAAGCTCATGA
**
37935295 GAGCCAATTATTAA---GAAGCTCATCC
1 GAGCC-A-TA-TAACGGGAAGCTCATGA
* *
37935320 GAGCCATA-AATGGGAAGCTCAAGA
1 GAGCCATATAACGGGAAGCTCATGA
* * * *
37935344 GA-CCAAATATCAGGAAGCTCCA-AA
1 GAGCCATATAACGGGAAGCT-CATGA
* * *
37935368 GAGCCAT-TAATCTGAAAGCTCATAA
1 GAGCCATATAA-CGGGAAGCTCATGA
* * *
37935393 GAGCCGTA-ATCGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGA
* *
37935417 GAGCCA-ATATCGGGAAGCTCGTGA
1 GAGCCATATAACGGGAAGCTCATGA
37935441 GAGCCA
1 GAGCCA
37935447 AGTAATGGGA
Statistics
Matches: 136, Mismatches: 28, Indels: 27
0.71 0.15 0.14
Matches are distributed among these distances:
21 2 0.01
23 7 0.05
24 61 0.45
25 60 0.44
26 1 0.01
27 2 0.01
28 3 0.02
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATGA
Found at i:37935410 original size:24 final size:25
Alignment explanation
Indices: 37935356--37935469 Score: 92
Period size: 24 Copynumber: 4.6 Consensus size: 25
37935346 CCAAATATCA
* *
37935356 GGAAGCTCCA-AAGAGCCATTAATCT
1 GGAAGCT-CATAAGAGCCAGTAATCG
*
37935381 GAAAGCTCATAAGAGCC-GTAATCG
1 GGAAGCTCATAAGAGCCAGTAATCG
** *
37935405 GGAAGCTCATGTGAGCCAAT-ATCG
1 GGAAGCTCATAAGAGCCAGTAATCG
* *
37935429 GGAAGCTCGTGAGAGCCAAGTAAT-G
1 GGAAGCTCATAAGAGCC-AGTAATCG
* *
37935454 GGATGCTCAGAAGAGC
1 GGAAGCTCATAAGAGC
37935470 TAAATAACGA
Statistics
Matches: 71, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
24 40 0.56
25 29 0.41
26 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.29, T:0.18
Consensus pattern (25 bp):
GGAAGCTCATAAGAGCCAGTAATCG
Found at i:37935461 original size:25 final size:26
Alignment explanation
Indices: 37935245--37935462 Score: 99
Period size: 25 Copynumber: 8.9 Consensus size: 26
37935235 AAGATCTTTT
* * *
37935245 GAGCCATGTAAT-GAGAAGCTCATGT
1 GAGCCAAGTAATCGGGAAGCTCATGA
* *
37935270 GAGCCATA-TAA-CGGGAAGCTCTTGC
1 GAGCCA-AGTAATCGGGAAGCTCATGA
* *** **
37935295 GAGCCAA-TTATTAAGAAGCTCATCC
1 GAGCCAAGTAATCGGGAAGCTCATGA
*
37935320 GAGCC-A-TAAAT-GGGAAGCTCAAGA
1 GAGCCAAGT-AATCGGGAAGCTCATGA
* * *
37935344 GA-CCAAAT-ATCAGGAAGCTCCA-AA
1 GAGCCAAGTAATCGGGAAGCT-CATGA
* * * *
37935368 GAGCC-ATTAATCTGAAAGCTCATAA
1 GAGCCAAGTAATCGGGAAGCTCATGA
*
37935393 GAGCC--GTAATCGGGAAGCTCATGT
1 GAGCCAAGTAATCGGGAAGCTCATGA
*
37935417 GAGCCAA-T-ATCGGGAAGCTCGTGA
1 GAGCCAAGTAATCGGGAAGCTCATGA
*
37935441 GAGCCAAGTAAT-GGGATGCTCA
1 GAGCCAAGTAATCGGGAAGCTCA
37935463 GAAGAGCTAA
Statistics
Matches: 148, Mismatches: 30, Indels: 30
0.71 0.14 0.14
Matches are distributed among these distances:
23 4 0.03
24 70 0.47
25 72 0.49
26 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (26 bp):
GAGCCAAGTAATCGGGAAGCTCATGA
Found at i:37935462 original size:73 final size:73
Alignment explanation
Indices: 37935245--37935469 Score: 186
Period size: 73 Copynumber: 3.1 Consensus size: 73
37935235 AAGATCTTTT
* * * * * * *
37935245 GAGCCATGTAATGAGAAGCTCATGTGAGCCATATAACGGGAAGCTCTTGCGAGCCAATTATTAAG
1 GAGCCAT-AAATGGGAAGCTCATGTGAGCCA-ATATCGGGAAGCTCCTGAGAGCCAATTAATAGG
**
37935310 AAGCTCATCC
64 AAGCTCATAA
* * * ** * *
37935320 GAGCCATAAATGGGAAGCTCAAGAGA-CCAAATATCAGGAAGCTCCAAAGAGCC-ATTAATCTGA
1 GAGCCATAAATGGGAAGCTCATGTGAGCC-AATATCGGGAAGCTCCTGAGAGCCAATTAAT-AGG
37935383 AAGCTCATAA
64 AAGCTCATAA
* * * *
37935393 GAGCCGT-AATCGGGAAGCTCATGTGAGCCAATATCGGGAAGCTCGTGAGAGCCAAGTAATGGGA
1 GAGCCATAAAT-GGGAAGCTCATGTGAGCCAATATCGGGAAGCTCCTGAGAGCCAATTAATAGGA
* *
37935457 TGCTCAGAA
65 AGCTCATAA
37935466 GAGC
1 GAGC
37935470 TAAATAACGA
Statistics
Matches: 117, Mismatches: 28, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
72 8 0.07
73 79 0.68
74 23 0.20
75 7 0.06
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (73 bp):
GAGCCATAAATGGGAAGCTCATGTGAGCCAATATCGGGAAGCTCCTGAGAGCCAATTAATAGGAA
GCTCATAA
Found at i:37936974 original size:12 final size:12
Alignment explanation
Indices: 37936955--37936986 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
37936945 ATGCCACACA
37936955 GCCGTGTGGTAG
1 GCCGTGTGGTAG
*
37936967 GTCGTGTGGTAG
1 GCCGTGTGGTAG
37936979 GCCGTGTG
1 GCCGTGTG
37936987 CCATAACACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.50, T:0.28
Consensus pattern (12 bp):
GCCGTGTGGTAG
Found at i:37938487 original size:21 final size:20
Alignment explanation
Indices: 37938458--37938501 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
37938448 ATACTAGAAC
*
37938458 CTGAAACTACTATAGGTAGTA
1 CTGAAACTACTATAGATAG-A
*
37938479 CTGAGACTACTATAGATAGA
1 CTGAAACTACTATAGATAGA
37938499 CTG
1 CTG
37938502 TACTGAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (20 bp):
CTGAAACTACTATAGATAGA
Found at i:37941548 original size:28 final size:28
Alignment explanation
Indices: 37941499--37941553 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
37941489 CAGTACAGTC
* * *
37941499 TGGGCCTTAGCCCTATATAGTAATAGTG
1 TGGGCCTAAGCCCAATACAGTAATAGTG
* *
37941527 TGGGCCTAAGCCCAATGCAGTATTAGT
1 TGGGCCTAAGCCCAATACAGTAATAGT
37941554 ACACTGTAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (28 bp):
TGGGCCTAAGCCCAATACAGTAATAGTG
Found at i:37941733 original size:27 final size:26
Alignment explanation
Indices: 37941703--37941774 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 26
37941693 AACATAGTTG
37941703 CCAGAAATAGTTAATGTGGCAAAGCCA
1 CCAG-AATAGTTAATGTGGCAAAGCCA
* *
37941730 CCAGCATCAG-TAATTGTGGCATAGCCA
1 CCAGAAT-AGTTAA-TGTGGCAAAGCCA
* *
37941757 CCAGTAACAGTGAATGTG
1 CCAG-AATAGTTAATGTG
37941775 ATATAGTCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
26 5 0.14
27 28 0.78
28 3 0.08
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
CCAGAATAGTTAATGTGGCAAAGCCA
Found at i:37942052 original size:53 final size:53
Alignment explanation
Indices: 37941961--37942143 Score: 217
Period size: 53 Copynumber: 3.4 Consensus size: 53
37941951 TATCACGGTC
*
37941961 ATTTTACCCTACAAGGGTATTACAGTCATTTAACCCTACAGGGGCATTACAATT
1 ATTTTACCCTAC-AGGGTATTACAGTCATTTTACCCTACAGGGGCATTACAATT
* * * * *
37942015 ATTTTACCTTACAGGGTATTACAGTTATTTTAGCCTACAGGGGTATTACAGTT
1 ATTTTACCCTACAGGGTATTACAGTCATTTTACCCTACAGGGGCATTACAATT
* * * * *
37942068 ATTTTACCCCATA-AGGGTATT-CGGTCATTTTACCCTTCAAGGGCATTACGATC
1 ATTTTA-CCC-TACAGGGTATTACAGTCATTTTACCCTACAGGGGCATTACAATT
37942121 ATTTTACCCTACAGGGATATTAC
1 ATTTTACCCTACAGGG-TATTAC
37942144 GATCAAATAA
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
51 2 0.02
52 7 0.06
53 75 0.69
54 22 0.20
55 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (53 bp):
ATTTTACCCTACAGGGTATTACAGTCATTTTACCCTACAGGGGCATTACAATT
Found at i:37942116 original size:80 final size:80
Alignment explanation
Indices: 37941932--37942143 Score: 196
Period size: 80 Copynumber: 2.6 Consensus size: 80
37941922 GGGCTACTCG
* * * * * *
37941932 TCATTTTGCCATACAGGGGTATCACGGTCATTTTACCCTACAAGGGTATTACAGTCATTTAACCC
1 TCATTTTACCTTACA-GGGCATTACGATCATTTTACCCTACAGGGGTATTACAGTCATTTAACCC
* *
37941997 TACAGGGGCATTACAA
65 CACAAGGGCATTACAA
* * * * * *
37942013 TTATTTTACCTTACAGGGTATTAC-AGTTATTTTAGCCTACAGGGGTATTACAGTTATTTTACCC
1 TCATTTTACCTTACAGGGCATTACGA-TCATTTTACCCTACAGGGGTATTACAGTCATTTAACCC
* * **
37942077 CATAAGGGTATT-CGG
65 CACAAGGGCATTACAA
*
37942092 TCATTTTACCCTT-CAAGGGCATTACGATCATTTTACCCTACAGGGATATTAC
1 TCATTTTA-CCTTAC-AGGGCATTACGATCATTTTACCCTACAGGGGTATTAC
37942144 GATCAAATAA
Statistics
Matches: 106, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
79 9 0.08
80 84 0.79
81 13 0.12
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.34
Consensus pattern (80 bp):
TCATTTTACCTTACAGGGCATTACGATCATTTTACCCTACAGGGGTATTACAGTCATTTAACCCC
ACAAGGGCATTACAA
Found at i:37942142 original size:27 final size:26
Alignment explanation
Indices: 37941932--37942148 Score: 165
Period size: 27 Copynumber: 8.1 Consensus size: 26
37941922 GGGCTACTCG
* * * *
37941932 TCATTTTGCCATACAGGGGTATCACGG
1 TCATTTTACCCTACA-GGGTATTACGA
37941959 TCATTTTACCCTACAAGGGTATTAC-A
1 TCATTTTACCCTAC-AGGGTATTACGA
* * *
37941985 GTCATTTAACCCTACAGGGGCATTACAA
1 -TCATTTTACCCTACA-GGGTATTACGA
* *
37942013 TTATTTTACCTTACAGGGTATTAC-A
1 TCATTTTACCCTACAGGGTATTACGA
* *
37942038 GTTATTTTAGCCTACAGGGGTATTAC-A
1 -TCATTTTACCCTACA-GGGTATTACGA
* *
37942065 GTTATTTTACCCCATA-AGGGTATT-CGG
1 -TCATTTTA-CCC-TACAGGGTATTACGA
* *
37942092 TCATTTTACCCTTCAAGGGCATTACGA
1 TCATTTTACCCTAC-AGGGTATTACGA
37942119 TCATTTTACCCTACAGGGATATTACGA
1 TCATTTTACCCTACAGGG-TATTACGA
37942146 TCA
1 TCA
37942149 AATAACGACC
Statistics
Matches: 157, Mismatches: 20, Indels: 26
0.77 0.10 0.13
Matches are distributed among these distances:
24 1 0.01
25 4 0.03
26 41 0.26
27 104 0.66
28 5 0.03
29 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGTATTACGA
Found at i:37945052 original size:11 final size:12
Alignment explanation
Indices: 37945029--37945057 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
37945019 AAAAAAAATC
37945029 TTATTTAATTAT
1 TTATTTAATTAT
37945041 TTATTT-ATTAT
1 TTATTTAATTAT
37945052 TTATTT
1 TTATTT
37945058 TGATTTTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TTATTTAATTAT
Found at i:37945900 original size:12 final size:12
Alignment explanation
Indices: 37945883--37945912 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37945873 ACAAAATCCG
37945883 AATTTAATTTCC
1 AATTTAATTTCC
*
37945895 AATTTAATTTCT
1 AATTTAATTTCC
37945907 AATTTA
1 AATTTA
37945913 TTTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTAATTTCC
Found at i:37947102 original size:23 final size:23
Alignment explanation
Indices: 37947072--37947129 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
37947062 CATGACTTAT
37947072 AATGGTTTAAAATTTTTAGTTAA
1 AATGGTTTAAAATTTTTAGTTAA
*
37947095 AATGGTTTAAAAATTTTAGTTAA
1 AATGGTTTAAAATTTTTAGTTAA
37947118 AA-GG-TTAAAATT
1 AATGGTTTAAAATT
37947130 GTAAAATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 7 0.21
22 2 0.06
23 24 0.73
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (23 bp):
AATGGTTTAAAATTTTTAGTTAA
Found at i:37948161 original size:56 final size:56
Alignment explanation
Indices: 37948075--37948265 Score: 285
Period size: 56 Copynumber: 3.4 Consensus size: 56
37948065 CCATGGCATC
** *
37948075 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTAATATGTGATTTT
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
* * *
37948131 GATATATGTGTGTGAGTAAGACCACGTTTAATACATTGGGATCGATATGTGATTCT
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
* * *
37948187 GATATATGTGT-CTGAGTAAGATCATGTTTAATACGTCGGCATCGATATGTGATTCT
1 GATATATGTGTGC-GAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
37948243 GATATATGTGTGCGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
37948266 CTATCTGGGA
Statistics
Matches: 120, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
56 119 0.99
57 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.36
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT
Found at i:37948284 original size:56 final size:55
Alignment explanation
Indices: 37948075--37948296 Score: 182
Period size: 56 Copynumber: 4.0 Consensus size: 55
37948065 CCATGGCATC
* ** ** *
37948075 GATATATGTGTGCGAGTAAGACCACGT-TTAATACGTTGGCATTAATATGTGATTTT
1 GATATATGTGTGCGAGTAAGACC-C-TATTAAAACACTGGCATCGATATGTGATTCT
* * * *
37948131 GATATATGTGTGTGAGTAAGACCACGT-TTAATACATTGGGATCGATATGTGATTCT
1 GATATATGTGTGCGAGTAAGACC-C-TATTAAAACACTGGCATCGATATGTGATTCT
* * * * *
37948187 GATATATGTGT-CTGAGTAAGATCATGTTTAATAC-GTCGGCATCGATATGTGATTCT
1 GATATATGTGTGC-GAGTAAGACCCT-ATTAAAACACT-GGCATCGATATGTGATTCT
***
37948243 GATATATGTGTGCGAGTAAGACCCTATCTGGGACACTGGCATCGATATGTGATT
1 GATATATGTGTGCGAGTAAGACCCTAT-TAAAACACTGGCATCGATATGTGATT
37948297 ACATGTAAGA
Statistics
Matches: 141, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.01
55 2 0.01
56 136 0.96
57 2 0.01
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (55 bp):
GATATATGTGTGCGAGTAAGACCCTATTAAAACACTGGCATCGATATGTGATTCT
Found at i:37948287 original size:112 final size:112
Alignment explanation
Indices: 37948075--37948296 Score: 288
Period size: 112 Copynumber: 2.0 Consensus size: 112
37948065 CCATGGCATC
* * *
37948075 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTAATATGTGATTTTGATATATGT
1 GATATATGTGTGCGAGTAAGACCACGTTTAATACGTCGGCATCAATATGTGATTCTGATATATGT
* * * *
37948140 GTGTGAGTAAGACCACGTTTAATACATTGGGATCGATATGTGATTCT
66 GTGCGAGTAAGACCACGTTTAAGACACTGGCATCGATATGTGATTCT
* * *
37948187 GATATATGTGT-CTGAGTAAGATCATGTTTAATACGTCGGCATCGATATGTGATTCTGATATATG
1 GATATATGTGTGC-GAGTAAGACCACGTTTAATACGTCGGCATCAATATGTGATTCTGATATATG
**
37948251 TGTGCGAGTAAGACC-C-TATCTGGGACACTGGCATCGATATGTGATT
65 TGTGCGAGTAAGACCACGT-T-TAAGACACTGGCATCGATATGTGATT
37948297 ACATGTAAGA
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
110 1 0.01
111 3 0.03
112 91 0.96
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (112 bp):
GATATATGTGTGCGAGTAAGACCACGTTTAATACGTCGGCATCAATATGTGATTCTGATATATGT
GTGCGAGTAAGACCACGTTTAAGACACTGGCATCGATATGTGATTCT
Found at i:37955087 original size:56 final size:56
Alignment explanation
Indices: 37955025--37955147 Score: 210
Period size: 56 Copynumber: 2.2 Consensus size: 56
37955015 TATTTTTGTG
*
37955025 CGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTTGATATATGTGTA
1 CGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTA
* *
37955081 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTG
1 CGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTA
*
37955137 CAAGTAAGACC
1 CGAGTAAGACC
37955148 CTGTCTGGGA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (56 bp):
CGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTA
Found at i:37963293 original size:31 final size:31
Alignment explanation
Indices: 37963255--37963333 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 31
37963245 TTTAACGATT
37963255 ACTGGGCCGAAGCCTTTTCATAAATCATAT-C
1 ACTGGGCCGAAGCCTTTTCATAAATCAT-TGC
*
37963286 ACTGGGCCAAAGCCTTTTCATAAATCATTGC
1 ACTGGGCCGAAGCCTTTTCATAAATCATTGC
*
37963317 ACTGGGCTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
37963334 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
30 1 0.02
31 43 0.98
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATTGC
Found at i:37963404 original size:42 final size:42
Alignment explanation
Indices: 37963357--37963448 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
37963347 TGGCCCATAG
* ** *
37963357 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
37963399 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
37963441 GCCCATTT
1 GCCCATTT
37963449 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:37963623 original size:26 final size:26
Alignment explanation
Indices: 37963580--37963703 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
37963570 CCTCTTTAAT
37963580 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
37963605 ACCTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
37963631 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
37963657 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* *
37963683 AATTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
37963704 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 9 0.10
26 81 0.90
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:37964568 original size:27 final size:27
Alignment explanation
Indices: 37964506--37964583 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
37964496 GGGCATATTC
37964506 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
37964533 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
37964560 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
37964584 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:37964851 original size:27 final size:27
Alignment explanation
Indices: 37964602--37964880 Score: 159
Period size: 27 Copynumber: 10.3 Consensus size: 27
37964592 TTCATCCTCT
* * * *
37964602 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
*** ** *
37964629 AAGGGTATTTCAATAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* * *
37964656 AATGGTATTTCT-ATAATTTTTAGAAAGTC
1 AAGGGTATTT-TGGTAA-TTTTACAAA-TC
* * **
37964685 AAGGATATTTCT-GTAACTTTGTAAATC
1 AAGGGTATTT-TGGTAATTTTACAAATC
* *
37964712 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAATC
* * * * *
37964739 GAGGCTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
*
37964766 AAGGGCATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
37964792 TAGGGGTATTTTGGTAATTTTACAAACC
1 -AAGGGTATTTTGGTAATTTTACAAATC
* **
37964820 AAGGGTATTTTAGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
* **** * *
37964847 GAGGGTAAAACGGTAATTCTATAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
37964874 AAGGGTA
1 AAGGGTA
37964881 AAACGATAAT
Statistics
Matches: 193, Mismatches: 53, Indels: 12
0.75 0.21 0.05
Matches are distributed among these distances:
26 2 0.01
27 163 0.84
28 14 0.07
29 14 0.07
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATC
Found at i:37964853 original size:54 final size:54
Alignment explanation
Indices: 37964714--37964853 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
37964704 TGTAAATCAG
* *
37964714 GGGTATTTTGGTAATTTTACAAATTGAGGCTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACCAA
* * * *
37964768 GGGCATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTCGGTAATTTCACAAACCAA
* **
37964822 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTA
37964854 AAACGGTAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 70 0.96
55 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:37964881 original size:27 final size:27
Alignment explanation
Indices: 37964832--37964988 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
37964822 GGGTATTTTA
*
37964832 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
37964859 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
37964886 ATAATTCTATAAGTCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
37964913 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
37964940 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
37964967 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
37964989 CTTTGGTAAT
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:37964988 original size:81 final size:81
Alignment explanation
Indices: 37964833--37964988 Score: 222
Period size: 81 Copynumber: 1.9 Consensus size: 81
37964823 GGTATTTTAG
* *
37964833 TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACGATAATTCTATAA
1 TAATTATGTAAATCGAGGGTAAAACGGTAATTATATAAATCAAGGGTAAAACGATAATTCTATAA
*
37964898 GTCGAGGGTAAAATGA
66 ATCGAGGGTAAAATGA
* * ** * *
37964914 TAATTATGTAAATCGGGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAACGGTAATTCTGTAA
1 TAATTATGTAAATCGAGGGTAAAACGGTAATTATATAAATCAAGGGTAAAACGATAATTCTATAA
*
37964979 ATCGGGGGTA
66 ATCGAGGGTA
37964989 CTTTGGTAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (81 bp):
TAATTATGTAAATCGAGGGTAAAACGGTAATTATATAAATCAAGGGTAAAACGATAATTCTATAA
ATCGAGGGTAAAATGA
Found at i:37964999 original size:81 final size:81
Alignment explanation
Indices: 37964821--37964999 Score: 214
Period size: 81 Copynumber: 2.2 Consensus size: 81
37964811 TTACAAACCA
* * * *
37964821 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACG
1 AGGGTAATTTGGTAATTATGTAAATCGAGGGTAAAACGGTAATTATATAAATCAAGGGTAAAACG
*
37964886 ATAATTCTATAAGTCG
66 ATAATTCTATAAATCG
** * * * **
37964902 AGGGTAAAATGATAATTATGTAAATCGGGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAACG
1 AGGGTAATTTGGTAATTATGTAAATCGAGGGTAAAACGGTAATTATATAAATCAAGGGTAAAACG
* *
37964967 GTAATTCTGTAAATCG
66 ATAATTCTATAAATCG
* *
37964983 GGGGTACTTTGGTAATT
1 AGGGTAATTTGGTAATT
37965000 TTACACGTCG
Statistics
Matches: 79, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (81 bp):
AGGGTAATTTGGTAATTATGTAAATCGAGGGTAAAACGGTAATTATATAAATCAAGGGTAAAACG
ATAATTCTATAAATCG
Found at i:37965037 original size:27 final size:27
Alignment explanation
Indices: 37964994--37965083 Score: 103
Period size: 27 Copynumber: 3.3 Consensus size: 27
37964984 GGGTACTTTG
**
37964994 GTAATTTTACACGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
37965021 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
37965048 GTATTTTTACAAA-CTAAGGGTATTTC-
1 GTAATTTTACAAATCGAA-GGTATTTCA
37965074 GATAATTTTA
1 G-TAATTTTA
37965084 GTAAACAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.06
27 51 0.94
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:37977185 original size:43 final size:42
Alignment explanation
Indices: 37977062--37977215 Score: 200
Period size: 42 Copynumber: 3.6 Consensus size: 42
37977052 TAAGTCTATG
*
37977062 TGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* **
37977104 CGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * * *
37977146 TGTAAGACTATAGCTGGGCTATTAGCATCGATATGAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
* *
37977189 TGTAAGACTATTTCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
37977216 TGGTATGGTA
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 60 0.63
43 35 0.37
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:37977205 original size:85 final size:84
Alignment explanation
Indices: 37977060--37977215 Score: 222
Period size: 85 Copynumber: 1.8 Consensus size: 84
37977050 ACTAAGTCTA
* * *
37977060 TGTGTAAGACCATATCTGGGATATGGCATCAATATGAGATTTCACGTAAGACCATATCTGGGATA
1 TGTGTAAGACCATAGCTGGGATATAGCATCAATATGAGATTACACGTAAGACCATATCTGGGATA
37977125 TGGCATCGATATGAGATTT
66 TGGCATCGATATGAGATTT
* * * * * *
37977144 TGTGTAAGACTATAGCTGGGCTATTAGCATCGATATGAGATTACATGTAAGACTATTTCTGGGAT
1 TGTGTAAGACCATAGCTGGGATA-TAGCATCAATATGAGATTACACGTAAGACCATATCTGGGAT
37977209 ATGGCAT
65 ATGGCAT
37977216 TGGTATGGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
84 20 0.32
85 42 0.68
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.32
Consensus pattern (84 bp):
TGTGTAAGACCATAGCTGGGATATAGCATCAATATGAGATTACACGTAAGACCATATCTGGGATA
TGGCATCGATATGAGATTT
Found at i:37979378 original size:50 final size:50
Alignment explanation
Indices: 37979297--37979741 Score: 399
Period size: 50 Copynumber: 8.9 Consensus size: 50
37979287 TCCGTTGTGA
* *
37979297 GTCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * * *
37979347 GTCGCATGTGTAGTACTAAGTGCAGGATACTATGCGTACC-TATTAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * *
37979398 ATCACATGTGTAGTACTAAGTGAAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * * *
37979448 GTCACGTGCGTAGTACTAAGTGCAGGCTACTACGCGTACTAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *
37979498 GTCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * ** * * *
37979548 GTGACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* ** ** * * *
37979599 ATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGTCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * *
37979649 GTCACGTATGTAGTAGTAAGTACAAGCTACTACGTGTACCAGATTAATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *
37979699 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
37979742 GAGCTTCGGT
Statistics
Matches: 307, Mismatches: 82, Indels: 12
0.77 0.20 0.03
Matches are distributed among these distances:
49 7 0.02
50 228 0.74
51 69 0.22
52 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:37979643 original size:201 final size:201
Alignment explanation
Indices: 37979296--37979730 Score: 629
Period size: 201 Copynumber: 2.2 Consensus size: 201
37979286 ATCCGTTGTG
* *
37979296 AGTCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGT
* * *
37979361 ACTAAGTGCAGGATACTATGCGTACCTATTAACTTTGATCACATGTGTAGTACTAAGTGAAGGCT
66 ACTAAGTGCAGGATACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGAAGGCT
* * * *
37979426 ACTACGTGTATCAGATGGTTAAGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGCGTACTAGA
131 ACTACGTGTATCAGATGGTTAAGTCACGTACGTAGTACTAAGTACAAGCTACTACGCGTACCAGA
**
37979491 TGGTTA
196 TGAATA
*
37979497 AGTCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATTGATAGGT-GACATGTGTAG
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCG-CATGTGTAG
* * ** *
37979561 TACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGCAGGC
65 TACTAAGTGCAGGATACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGAAGGC
* * * *
37979626 TACTACGTGTGTCAGATGGTTAAGTCACGTATGTAGTAGTAAGTACAAGCTACTACGTGTACCAG
130 TACTACGTGTATCAGATGGTTAAGTCACGTACGTAGTACTAAGTACAAGCTACTACGCGTACCAG
*
37979691 ATTAATA
195 ATGAATA
* * *
37979698 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
37979731 TGCGTACCAG
Statistics
Matches: 207, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
200 1 0.00
201 206 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (201 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGATACTATGCATACCCATTAACTTCGATCACATGTGTAGTACTAAGTGAAGGCT
ACTACGTGTATCAGATGGTTAAGTCACGTACGTAGTACTAAGTACAAGCTACTACGCGTACCAGA
TGAATA
Found at i:37979749 original size:151 final size:151
Alignment explanation
Indices: 37979295--37979749 Score: 492
Period size: 151 Copynumber: 3.0 Consensus size: 151
37979285 GATCCGTTGT
* * * * * *
37979295 GAGTCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAG
1 GAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATGGTTAAGTCACGTGTGTAG
* * * * * * * * *
37979360 TACTAAGTGCAGGATACTATGCGTACC-TATTAACTTTGATCACATGTGTAGTACTAAGTGAAGG
65 TACTAAGTGCAAGCTACTACGTGTACCAGATTAA--TAGGTCGCATGTGTAGTACTAAGTGCAGG
* * *
37979424 CTACTACGTGTATCAGATG-G-TT-
128 CTACTATGCGTACCAGA-GAGCTTC
* * *
37979446 AAGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGCGTACTAGATGGTTAAGTCACGTGTGTAG
1 GAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-AGATGGTTAAGTCACGTGTGTAG
* *
37979511 TACTAAGTGC-AGACTACTACATGTACCAGATTGATAGGT-GACATGTGTAGTACTAAGTGCAGG
65 TACTAAGTGCAAG-CTACTACGTGTACCAGATTAATAGGTCG-CATGTGTAGTACTAAGTGCAGG
* * ** *
37979574 CTACTATGCATACCCGTTAACTTC
128 CTACTATGCGTACCAGAGAGCTTC
* * *
37979598 GA-TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGTCAGATGGTTAAGTCACGTATGTAG
1 GAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGT-ACAGATGGTTAAGTCACGTGTGTAG
* *
37979662 TAGTAAGTACAAGCTACTACGTGTACCAGATTAATAGGTCGCATGTGTAGTACTAAGTGCAGGCT
65 TACTAAGTGCAAGCTACTACGTGTACCAGATTAATAGGTCGCATGTGTAGTACTAAGTGCAGGCT
37979727 ACTATGCGTACCAGAGAGCTTC
130 ACTATGCGTACCAGAGAGCTTC
37979749 G
1 G
37979750 GTTACAAGGG
Statistics
Matches: 251, Mismatches: 43, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
150 37 0.15
151 205 0.82
152 9 0.04
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (151 bp):
GAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGATGGTTAAGTCACGTGTGTAGT
ACTAAGTGCAAGCTACTACGTGTACCAGATTAATAGGTCGCATGTGTAGTACTAAGTGCAGGCTA
CTATGCGTACCAGAGAGCTTC
Found at i:37980515 original size:16 final size:19
Alignment explanation
Indices: 37980479--37980516 Score: 55
Period size: 16 Copynumber: 2.2 Consensus size: 19
37980469 TAAATAAATT
37980479 AATAACAATGACTCGAGAA
1 AATAACAATGACTCGAGAA
37980498 AATAAC-ATGAC-C-AGAA
1 AATAACAATGACTCGAGAA
37980514 AAT
1 AAT
37980517 CAGCAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 5 0.26
19 6 0.32
ACGTcount: A:0.55, C:0.16, G:0.13, T:0.16
Consensus pattern (19 bp):
AATAACAATGACTCGAGAA
Found at i:37983714 original size:48 final size:48
Alignment explanation
Indices: 37983642--37983953 Score: 331
Period size: 48 Copynumber: 6.5 Consensus size: 48
37983632 TGTGTAAGCC
* * *
37983642 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
* * *** * *
37983690 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
* * *
37983738 AGTGTAAGACCATATTTGGAACATGGCATCGGTATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
* *** * *
37983786 AGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCTCAATATGTGAGCC
1 AGTGTAAGACCATGTCT-GGAACATGGCATCGGCATTGTTATGAGAGCT
* * *
37983834 AGTGTAAGACCATATTTGGAACATGGCATCGGTATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
* *** * *
37983882 AGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCTCAATATGTGAGCC
1 AGTGTAAGACCATGTCT-GGAACATGGCATCGGCATTGTTATGAGAGCT
*
37983930 AGTGTAAGACCATGTTTGGAACAT
1 AGTGTAAGACCATGTCTGGAACAT
37983954 AAGGCCATTT
Statistics
Matches: 212, Mismatches: 48, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
47 4 0.02
48 204 0.96
49 4 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGTTATGAGAGCT
Found at i:37983802 original size:96 final size:96
Alignment explanation
Indices: 37983638--37983953 Score: 578
Period size: 96 Copynumber: 3.3 Consensus size: 96
37983628 AGGTTGTGTA
* ** *
37983638 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGTTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATATTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAAGACCAT
*
37983703 GTCTGGGACATGGCATCGGCCTCAATATGTG
66 GTCTAGGACATGGCATCGGCCTCAATATGTG
37983734 AGCCAGTGTAAGACCATATTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATATTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAAGACCAT
37983799 GTCTAGGACATGGCATCGGCCTCAATATGTG
66 GTCTAGGACATGGCATCGGCCTCAATATGTG
37983830 AGCCAGTGTAAGACCATATTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATATTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAAGACCAT
37983895 GTCTAGGACATGGCATCGGCCTCAATATGTG
66 GTCTAGGACATGGCATCGGCCTCAATATGTG
*
37983926 AGCCAGTGTAAGACCATGTTTGGAACAT
1 AGCCAGTGTAAGACCATATTTGGAACAT
37983954 AAGGCCATTT
Statistics
Matches: 214, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 214 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (96 bp):
AGCCAGTGTAAGACCATATTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAAGACCAT
GTCTAGGACATGGCATCGGCCTCAATATGTG
Found at i:37986823 original size:18 final size:18
Alignment explanation
Indices: 37986796--37986833 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
37986786 ACCCGAGAAA
37986796 TGGGGCTAGTAGCAGAGG
1 TGGGGCTAGTAGCAGAGG
*
37986814 TGGGGTTAGTAGCAGAGG
1 TGGGGCTAGTAGCAGAGG
37986832 TG
1 TG
37986834 CACCTAGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.08, G:0.50, T:0.21
Consensus pattern (18 bp):
TGGGGCTAGTAGCAGAGG
Found at i:37991539 original size:48 final size:48
Alignment explanation
Indices: 37991486--37991946 Score: 409
Period size: 48 Copynumber: 9.6 Consensus size: 48
37991476 TGATACTAGG
* * *
37991486 GTTATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * * *
37991534 GTTATGAGAGCTAGTGTAAAATCATGTTTGGGACATGGCATAGGCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * *
37991582 AATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCGGCATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * * * * * *
37991630 GTTACGAGAGCTAGTGTAAGATCACGTTTGGGATATGGTATCGCCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * ** * *
37991678 AATATGTGAGCCAACGTAAGACCATGTTTGGAGCATGGCATCGACATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * *
37991726 GTTATGAAAGCTAGTGTAAGACCATGTTTGGGACATGGCACCGGCCTT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * *
37991774 AATATGTGAGGTAGTGTAAGACCATGTTTGGAACATGGCATCGGTATT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
* * * * * * *
37991822 GTTATGAGAGCTAGTGTAAGACCAAGTCTGGGACACGGCATAGGCCTC
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
** * * * * * *
37991870 AATATGTGATCCAGTGTAAGACCCTGTTTGGAACATGGCATCGGTACT
1 GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
37991918 GATATATGAGAGCTAGTGTAAGACCATGT
1 G-T-TATGAGAGCTAGTGTAAGACCATGT
37991947 CGAGGACATG
Statistics
Matches: 307, Mismatches: 104, Indels: 2
0.74 0.25 0.00
Matches are distributed among these distances:
48 286 0.93
50 21 0.07
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
GTTATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
Found at i:37991659 original size:96 final size:96
Alignment explanation
Indices: 37991488--37991960 Score: 642
Period size: 96 Copynumber: 4.9 Consensus size: 96
37991478 ATACTAGGGT
*
37991488 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* *
37991553 AATCATGTTTGGGACATGGCATAGGCCTCAA
66 GACCATGTTTGGGACATGGCATAGGCCTCAA
* *
37991584 TATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTACGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* * * * * *
37991649 GATCACGTTTGGGATATGGTATCGCCCTCAA
66 GACCATGTTTGGGACATGGCATAGGCCTCAA
** * * *
37991680 TATGTGAGCCAACGTAAGACCATGTTTGGAGCATGGCATCGACATTGTTATGAAAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
** *
37991745 GACCATGTTTGGGACATGGCACCGGCCTTAA
66 GACCATGTTTGGGACATGGCATAGGCCTCAA
** *
37991776 TATGTGAGGTAGTGTAAGACCATGTTTGGAACATGGCATCGGTATTGTTATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
* * *
37991841 GACCAAGTCTGGGACACGGCATAGGCCTCAA
66 GACCATGTTTGGGACATGGCATAGGCCTCAA
* * * *
37991872 TATGTGATCCAGTGTAAGACCCTGTTTGGAACATGGCATCGGTACTGATATATGAGAGCTAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG-T-TATGAGAGCTAGTGT
*
37991937 AAGACCATG-TCGAGGACATGGCAT
64 AAGACCATGTTTG-GGACATGGCAT
37991961 CGACATCTTA
Statistics
Matches: 330, Mismatches: 44, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
96 295 0.89
97 2 0.01
98 33 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAA
GACCATGTTTGGGACATGGCATAGGCCTCAA
Found at i:38003564 original size:30 final size:30
Alignment explanation
Indices: 38003529--38003588 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
38003519 CAAGAAAACT
*
38003529 GAATAAAGAAATCCA-AGATAGAGAAACCCA
1 GAATAAAGAAATCCAGA-ATAAAGAAACCCA
38003559 GAATAAAGAAATCCAGAATAAAGAAACCCA
1 GAATAAAGAAATCCAGAATAAAGAAACCCA
38003589 AGATACGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.10
Consensus pattern (30 bp):
GAATAAAGAAATCCAGAATAAAGAAACCCA
Found at i:38003568 original size:15 final size:15
Alignment explanation
Indices: 38003529--38003588 Score: 77
Period size: 15 Copynumber: 4.0 Consensus size: 15
38003519 CAAGAAAACT
*
38003529 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
*
38003544 -AGATAGAGAAACCCA
1 GA-ATAAAGAAACCCA
*
38003559 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
38003574 GAATAAAGAAACCCA
1 GAATAAAGAAACCCA
38003589 AGATACGATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 1 0.03
15 36 0.95
16 1 0.03
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.10
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:38024187 original size:28 final size:27
Alignment explanation
Indices: 38024120--38024189 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
38024110 AGAATATGAT
* *
38024120 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
38024147 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
38024175 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
38024190 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:38024205 original size:55 final size:53
Alignment explanation
Indices: 38024065--38024216 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
38024055 TAAATTGTAC
* *
38024065 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
* ** * ***
38024118 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAA-TATG
* *
38024173 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
38024217 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
Found at i:38024221 original size:27 final size:27
Alignment explanation
Indices: 38024066--38024221 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
38024056 AAATTGTACA
* *
38024066 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
38024093 GCACTAAGTGTGCGAAAAGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
38024120 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
38024147 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
38024175 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
38024202 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
38024222 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:38032234 original size:28 final size:27
Alignment explanation
Indices: 38032167--38032236 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
38032157 AGAATATGAT
* *
38032167 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
38032194 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
38032222 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
38032237 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:38032252 original size:55 final size:53
Alignment explanation
Indices: 38032112--38032263 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
38032102 TAAATTGTAC
* *
38032112 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
* ** * ***
38032165 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAA-TATG
* *
38032220 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
38032264 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
Found at i:38032268 original size:27 final size:27
Alignment explanation
Indices: 38032113--38032268 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
38032103 AAATTGTACA
* *
38032113 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
38032140 GCACTAAGTGTGCGAAAAGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
38032167 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
38032194 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
38032222 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
38032249 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
38032269 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:38035606 original size:39 final size:40
Alignment explanation
Indices: 38035390--38035690 Score: 391
Period size: 39 Copynumber: 7.6 Consensus size: 40
38035380 TATTCGAATG
* * *
38035390 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
38035430 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-TATTGATT
*
38035470 ATATCCGGGCTTAAGTCCCGAAGGCATTTGCGCTTATTGATT
1 ATATCCGGGC-TAAGTCCCGAAGGCATTTGTGC-TATTGATT
*
38035512 ATATCCGGGCTAAGTCCCGAAGGCATTTGCGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
*
38035552 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTG-TT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* *
38035590 ATATCCGGGCTAAAGT-CCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCT-AAGTCCCGAAGGCATTTGTGCTATTGATT
* * *
38035630 ATATCCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGATT
* *
38035669 AAATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
38035691 TACTTGGGTT
Statistics
Matches: 239, Mismatches: 14, Indels: 17
0.89 0.05 0.06
Matches are distributed among these distances:
38 19 0.08
39 90 0.38
40 69 0.29
41 27 0.11
42 34 0.14
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
Found at i:38213700 original size:142 final size:141
Alignment explanation
Indices: 38213283--38213842 Score: 750
Period size: 142 Copynumber: 3.9 Consensus size: 141
38213273 GAAATGATAG
* *
38213283 TAAGGCCTAAT-GGCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGGCTAATGGCCG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * *
38213346 ATGTTATGAATGTGAAAAGTGTATATATATGTGATGGGCCTAATGGCGCAGATGTGATGAATGTG
64 ATGTGATGAATGTG-AAAGTG--TATATATGTGATAGGCCTAATGGC-C-GACGTGATGAATGTG
*
38213411 AAAGTGTATATATATTGTGA
124 AAAGTGTA-ATAT-GTGTGA
* * * *
38213431 TAGGGCCTAATGGCCGATGTGATGAATGTG-AAGGGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
38213495 GTGATGAATGTGAAAGTGTATATACGTGATAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGT
66 GTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGT
38213560 AATATGTGTGA
131 AATATGTGTGA
* * * *
38213571 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
38213636 GTGATGAATGTGAAAGTGTATGTGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
*
38213701 T-ATGTGTGTGA
130 TAATATGTGTGA
38213712 TAAGGCCTAATAGCCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
1 TAAGGCCTAATAG-CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
* * * * * * *
38213777 TGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAACGTAATGGATGTGGAAGT
65 TGTGATGAATGTGAAAGTGTATATATGTGA-TAGGCCTAATGGCCGACGTGATGAATGTGAAAGT
38213842 G
129 G
38213843 CATAAATTGA
Statistics
Matches: 369, Mismatches: 37, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
140 32 0.09
141 82 0.22
142 158 0.43
143 1 0.00
144 22 0.06
146 17 0.05
147 26 0.07
148 14 0.04
149 17 0.05
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (141 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGT
AATATGTGTGA
Found at i:38213836 original size:47 final size:47
Alignment explanation
Indices: 38213283--38213813 Score: 721
Period size: 47 Copynumber: 11.1 Consensus size: 47
38213273 GAAATGATAG
38213283 TAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
38213331 T-AGGGCTAATGGCCGATGTTATGAATGTGAAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAAGTG--TATATATGTGA
*
38213380 T-GGGCCTAATGGCGCAGATGTGATGAATGTGAAAGTGTATATATATTGTGA
1 TAAGGCCTAATGGC-C-GATGTGATGAATGTGAAAGTG--TATATA-TGTGA
* * *
38213431 TAGGGCCTAATGGCCGATGTGATGAATGTG-AAGGGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
38213477 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
38213524 T-AGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-ATATATGTGA
* * *
38213571 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
38213618 TAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
38213665 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
38213712 TAAGGCCTAATAGCCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAAT-GGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38213760 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
38213807 CAAGGCC
1 TAAGGCC
38213814 GAGTGGCCAA
Statistics
Matches: 448, Mismatches: 25, Indels: 21
0.91 0.05 0.04
Matches are distributed among these distances:
46 67 0.15
47 192 0.43
48 92 0.21
49 34 0.08
50 30 0.07
51 21 0.05
52 12 0.03
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:38215954 original size:43 final size:42
Alignment explanation
Indices: 38215885--38216022 Score: 183
Period size: 43 Copynumber: 3.2 Consensus size: 42
38215875 TTGGTTATCA
*
38215885 GCACTAAGTG-TGCGAGCAATAAGTGTTCACAGTTTGTGAGATTG
1 GCACTAAGTGCGGCGA--AATAAGTGTTCAC-GTTTGTGAGATTG
38215929 GCACTAAGTGCGGCGAAATAAGTGTTCACGGTTTGTGAGATTG
1 GCACTAAGTGCGGCGAAATAAGTGTTCAC-GTTTGTGAGATTG
* *
38215972 GCAC-AAGTTGCGG-GCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAG-TGCGGCGAAATAAGTGTTCACGTTTGTGAGATTG
38216013 GCACTAAGTG
1 GCACTAAGTG
38216023 TGCGGGCTTG
Statistics
Matches: 87, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
41 18 0.21
42 20 0.23
43 35 0.40
44 10 0.11
45 4 0.05
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (42 bp):
GCACTAAGTGCGGCGAAATAAGTGTTCACGTTTGTGAGATTG
Found at i:38216070 original size:29 final size:29
Alignment explanation
Indices: 38216011--38216083 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 29
38216001 GTTGTGAGAT
* * *
38216011 TGGCACTAAGTGTGCGGGCTTGAAATGCA
1 TGGCAATAAGTGTGCGAGCTTGAAATACA
*
38216040 TGGCAATAAGTGTGCGAG-TTTAAAGTACA
1 TGGCAATAAGTGTGCGAGCTTGAAA-TACA
38216069 TGG-AACTAAGT-TGCG
1 TGGCAA-TAAGTGTGCG
38216084 TGGTTGATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
28 11 0.29
29 27 0.71
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCAATAAGTGTGCGAGCTTGAAATACA
Found at i:38216447 original size:39 final size:38
Alignment explanation
Indices: 38216396--38216543 Score: 145
Period size: 39 Copynumber: 3.8 Consensus size: 38
38216386 GATGTTCGGC
38216396 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
1 CTAA-TCCCGAAGAGCATTCATGCTAGTGAT-TATCCGGG
* * **
38216436 CTAATTCCGAAGAGCATTCGTGCTAGTGATATATCCATG
1 CTAATCCCGAAGAGCATTCATGCTAGTGAT-TATCCGGG
* * *
38216475 CTAAACCCCGAAGAGCATTCGTGCTGGTG-TTATGCCGGG
1 CT-AATCCCGAAGAGCATTCATGCTAGTGATTAT-CCGGG
* * *
38216514 CTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CTA-ATCCCGAAGAGCATTCATGCTAGTGA
38216544 CGTGTATCGG
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
38 4 0.04
39 59 0.66
40 27 0.30
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (38 bp):
CTAATCCCGAAGAGCATTCATGCTAGTGATTATCCGGG
Found at i:38216728 original size:25 final size:25
Alignment explanation
Indices: 38216699--38216749 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
38216689 ATGTAATAAC
38216699 GAATGAATAAGA-GCACTATGTGTGT
1 GAATG-ATAAGAGGCACTATGTGTGT
* *
38216724 GAATGATTAGAGGCACTGTGTGTGT
1 GAATGATAAGAGGCACTATGTGTGT
38216749 G
1 G
38216750 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.29
Consensus pattern (25 bp):
GAATGATAAGAGGCACTATGTGTGT
Found at i:38220135 original size:45 final size:45
Alignment explanation
Indices: 38219973--38220477 Score: 757
Period size: 45 Copynumber: 10.9 Consensus size: 45
38219963 GAAATGATAG
38219973 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATGTGA
38220022 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATGTGA
*
38220070 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGA
38220114 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGA
38220159 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGA
*
38220204 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA--TGTGA
* *
38220251 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGA
*
38220295 TGATAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 T-A-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA--TGTGA
* *
38220344 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATGTGA
38220391 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
38220437 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
38220478 ATGTGACAAG
Statistics
Matches: 436, Mismatches: 7, Indels: 30
0.92 0.01 0.06
Matches are distributed among these distances:
44 10 0.02
45 136 0.31
46 78 0.18
47 120 0.28
48 89 0.20
49 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (45 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGA
Found at i:38220156 original size:23 final size:23
Alignment explanation
Indices: 38220130--38220247 Score: 66
Period size: 23 Copynumber: 5.2 Consensus size: 23
38220120 CTAATGGCCG
38220130 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
* * ***
38220153 ATGTGAT-AAGGCCT-AATG-GCCG
1 ATGTGATGAATG--TGAAAGTGTAT
38220175 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
* *** ***
38220198 ATGTGAT-AAGGCCTAA-TAGCCG
1 ATGTGATGAATGTGAAAGT-GTAT
38220220 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
38220243 ATGTG
1 ATGTG
38220248 TGATAAGGCC
Statistics
Matches: 63, Mismatches: 24, Indels: 16
0.61 0.23 0.16
Matches are distributed among these distances:
21 2 0.03
22 27 0.43
23 32 0.51
24 2 0.03
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.31
Consensus pattern (23 bp):
ATGTGATGAATGTGAAAGTGTAT
Found at i:38220273 original size:47 final size:47
Alignment explanation
Indices: 38219973--38220533 Score: 838
Period size: 47 Copynumber: 12.1 Consensus size: 47
38219963 GAAATGATAG
38219973 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
38220022 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
38220070 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--TGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38220114 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38220159 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
38220204 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
38220251 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
38220298 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
38220344 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38220391 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38220437 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
38220484 CAAGGCCGAGTGGCCAACGTAATGGATGTG-AAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38220530 TAAG
1 TAAG
38220534 TCCCGAAGGC
Statistics
Matches: 488, Mismatches: 17, Indels: 17
0.93 0.03 0.03
Matches are distributed among these distances:
43 4 0.01
44 4 0.01
45 117 0.24
46 112 0.23
47 168 0.34
48 82 0.17
49 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:38220518 original size:93 final size:94
Alignment explanation
Indices: 38219973--38220533 Score: 838
Period size: 93 Copynumber: 6.0 Consensus size: 94
38219963 GAAATGATAG
38219973 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
38220037 ATGTGATGAATGTGAAAGTGTATATATATGTGA
64 ATGTGATGAATGTGAAAGTG--TATATATGTGA
38220070 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--TGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
38220132 GTGATGAATGTGAAAGTG--TATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
*
38220159 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
38220222 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * * *
38220251 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGAT-AGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
38220315 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * *
38220344 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTGTGTGATAAGGCCTAAT-GCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
38220408 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
38220437 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * *
38220502 GTAATGGATGTG-AAGTGCATAAATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
38220530 TAAG
1 TAAG
38220534 TCCCGAAGGC
Statistics
Matches: 434, Mismatches: 20, Indels: 24
0.91 0.04 0.05
Matches are distributed among these distances:
88 4 0.01
89 10 0.02
90 72 0.17
92 46 0.11
93 229 0.53
94 38 0.09
96 34 0.08
97 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:38220707 original size:37 final size:37
Alignment explanation
Indices: 38220651--38220729 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
38220641 CCGAGCTCTA
* * *
38220651 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
38220688 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
38220725 AAGAC
1 AAGAC
38220730 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:38222660 original size:43 final size:43
Alignment explanation
Indices: 38222569--38222713 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
38222559 GTTGGTTTCA
*
38222569 GCACTAAGTGTGCGAGCAATAAGTGTTCAC-GTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
38222611 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
38222654 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
38222697 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
38222714 TTGAAATGCA
Statistics
Matches: 101, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
42 29 0.29
43 72 0.71
ACGTcount: A:0.23, C:0.15, G:0.34, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:38222754 original size:29 final size:29
Alignment explanation
Indices: 38222695--38222768 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
38222685 GTTGTGAGAT
* * *
38222695 TGGCACTAAGTGTGCGGGCTTGAAATGCA
1 TGGCAATAAGTGTGCGAGCTTGAAATACA
*
38222724 TGGCAATAAGTGTGCGAG-TTTAAAGTACA
1 TGGCAATAAGTGTGCGAGCTTGAAA-TACA
38222753 TGG-AACTAAGTGTGCG
1 TGGCAA-TAAGTGTGCG
38222769 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 7 0.18
29 32 0.82
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCAATAAGTGTGCGAGCTTGAAATACA
Found at i:38223127 original size:40 final size:40
Alignment explanation
Indices: 38223081--38223234 Score: 182
Period size: 40 Copynumber: 3.9 Consensus size: 40
38223071 GAATGATGTT
*
38223081 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
* *
38223121 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
** ** * * * *
38223161 CATGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATGTC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
* * *
38223201 CGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
38223235 CGTGTATTCG
Statistics
Matches: 95, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 95 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATC
Found at i:38223427 original size:25 final size:25
Alignment explanation
Indices: 38223398--38223448 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
38223388 ATGTAATAAC
38223398 GAATGAATAAGA-GCACTATGTGTGT
1 GAATG-ATAAGAGGCACTATGTGTGT
* *
38223423 GAATGATTAGAGGCACTGTGTGTGT
1 GAATGATAAGAGGCACTATGTGTGT
38223448 G
1 G
38223449 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.29
Consensus pattern (25 bp):
GAATGATAAGAGGCACTATGTGTGT
Found at i:38226765 original size:40 final size:42
Alignment explanation
Indices: 38226719--38226809 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 42
38226709 CCGATGTGAT
38226719 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGTCGATGTG
1 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGTC-----G
38226766 ATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGTCG
1 --GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGTCG
38226810 ATGTGATGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
44 1 0.02
49 41 0.98
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.32
Consensus pattern (42 bp):
GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGTCG
Found at i:38226852 original size:47 final size:47
Alignment explanation
Indices: 38226696--38227220 Score: 753
Period size: 47 Copynumber: 11.1 Consensus size: 47
38226686 GAAATGATAG
38226696 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
38226745 TAGGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * *
38226794 TAGGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
38226841 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
38226888 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
38226935 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
38226982 TAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGGGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
38227029 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
38227076 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38227123 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
38227170 TAAGGCCGAGTGGCCAACGTAATGGATGTGGAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
38227217 TAAG
1 TAAG
38227221 TCCCGAAAGG
Statistics
Matches: 445, Mismatches: 31, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
47 362 0.81
49 83 0.19
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:38227395 original size:37 final size:37
Alignment explanation
Indices: 38227343--38227415 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
38227333 GCTCTAAAGA
* * *
38227343 CCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAGC
1 CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGC
*
38227380 CCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAG
1 CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAG
38227416 ACTTCGTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.19, C:0.21, G:0.33, T:0.27
Consensus pattern (37 bp):
CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGC
Found at i:38229391 original size:10 final size:10
Alignment explanation
Indices: 38229376--38229437 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
38229366 TTTGAACCAT
*
38229376 TACCAATTCG
1 TACCAATTCA
*
38229386 TACCAAATACCA
1 TACC-AAT-TCA
*
38229398 TACCATTTCA
1 TACCAATTCA
38229408 TACCAATTCCA
1 TACCAATT-CA
* *
38229419 TACCATTTCG
1 TACCAATTCA
38229429 TACCAATTC
1 TACCAATTC
38229438 CCAAATACAC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:38229421 original size:21 final size:21
Alignment explanation
Indices: 38229376--38229438 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
38229366 TTTGAACCAT
* *
38229376 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
38229398 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
38229419 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
38229439 CAAATACACA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:38243000 original size:364 final size:364
Alignment explanation
Indices: 38242331--38243060 Score: 1379
Period size: 364 Copynumber: 2.0 Consensus size: 364
38242321 TTGCATGCTA
38242331 AGGCGTTATCACTCTAGTCCTACGCATATTATCTCGACTGAGGAAATGAAGGTTGGATCAGATAT
1 AGGCGTTATCACTCTAGTCCTACGCATATTATCTCGACTGAGGAAATGAAGGTTGGATCAGATAT
38242396 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
66 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
38242461 TCCCACTGGTTAAAGTACTTTAGCGTAATCACAGTTCTGAGGATGCCACGTGGGAAACTGAGGAG
131 TCCCACTGGTTAAAGTACTTTAGCGTAATCACAGTTCTGAGGATGCCACGTGGGAAACTGAGGAG
38242526 GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGCCAAAATTTTCTTTTA
196 GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGCCAAAATTTTCTTTTA
38242591 GGTGGGTAGAGTTCTAACGCCCCAAAAATGTAGTAATTATTTTTGTGTGTTGTGTTACACAACTC
261 GGTGGGTAGAGTTCTAACGCCCCAAAAATGTAGTAATTATTTTTGTGTGTTGTGTTACACAACTC
*
38242656 TGTATCTGCTTCAGTGGTTATGTGTTCTGGGAGTGTCTG
326 TGTATCTGCGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
* * *
38242695 AGGCGTTATCGCTCTAGTCCTACGCATATTATCTCGACTGAGGAAATTAAGGTTGGATCAGATCT
1 AGGCGTTATCACTCTAGTCCTACGCATATTATCTCGACTGAGGAAATGAAGGTTGGATCAGATAT
38242760 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
66 TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
*
38242825 TCCCACTGGTTAAATTACTTTAGCGTAATCACAGTTCTGAGGATGCCACGTGGGAAACTGAGGAG
131 TCCCACTGGTTAAAGTACTTTAGCGTAATCACAGTTCTGAGGATGCCACGTGGGAAACTGAGGAG
* *
38242890 GCAATGCGACAATAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGTCAAAATTTTCTTTTA
196 GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGCCAAAATTTTCTTTTA
* *
38242955 GGTGGGTAGAGTTCTAACGCCCCAAAAATTTAGTAATTATTTTTGTGTGTTGTGTTACACAACTG
261 GGTGGGTAGAGTTCTAACGCCCCAAAAATGTAGTAATTATTTTTGTGTGTTGTGTTACACAACTC
38243020 TGTATCTGCGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
326 TGTATCTGCGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
38243059 AG
1 AG
38243061 AAGTCCTAGG
Statistics
Matches: 357, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
364 357 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (364 bp):
AGGCGTTATCACTCTAGTCCTACGCATATTATCTCGACTGAGGAAATGAAGGTTGGATCAGATAT
TACTTTCAAGGAGGAGCTAATTCAAATTTTAGATCGTGATATGGAAGTCTTGAGGAAAAATTCTA
TCCCACTGGTTAAAGTACTTTAGCGTAATCACAGTTCTGAGGATGCCACGTGGGAAACTGAGGAG
GCAATGCGACAACAATACCCTCATCTGTTTTGATAGGTAAATTTCGATGCCAAAATTTTCTTTTA
GGTGGGTAGAGTTCTAACGCCCCAAAAATGTAGTAATTATTTTTGTGTGTTGTGTTACACAACTC
TGTATCTGCGTCAGTGGTTATGTGTTCTGGGAGTGTCTG
Found at i:38244872 original size:40 final size:39
Alignment explanation
Indices: 38244803--38244940 Score: 204
Period size: 40 Copynumber: 3.5 Consensus size: 39
38244793 AACCCAAGTA
* * *
38244803 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGAACTTAGCCGGATATAGTAACTCGCACAAATG
38244842 CCTTCGGAACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGAACTTAGCC-GGATATAGTAACTCGCACAAATG
*
38244882 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGAACTTAG-CCGGATATAGTAACTCGCACAAATG
*
38244922 CCTTCGGATCTTAGTCCGG
1 CCTTCGGAACTTAG-CCGG
38244941 TTATCATCCG
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGAACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:38253014 original size:40 final size:40
Alignment explanation
Indices: 38252842--38253007 Score: 271
Period size: 40 Copynumber: 4.2 Consensus size: 40
38252832 AACCCAAGTA
* *
38252842 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
38252881 CCTTCGGAACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
38252921 CCTTCGGGACTTAGCCCGGATATGGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
38252961 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
38253001 CCTTCGG
1 CCTTCGG
38253008 ATCTTAGTCT
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 12 0.10
40 104 0.90
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:38265251 original size:16 final size:16
Alignment explanation
Indices: 38265232--38265263 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
38265222 AATTATTTTA
38265232 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
38265248 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
38265264 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:38265528 original size:50 final size:50
Alignment explanation
Indices: 38265463--38265958 Score: 430
Period size: 50 Copynumber: 9.9 Consensus size: 50
38265453 ACCGAAGCTC
* * *
38265463 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * * * * * *
38265513 TCTGGTACACGTAGTAGTCTGTACTTAGTAATACACATGTAACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * ** *
38265563 TCTGATGCACGTAGTAGCGTGCACTTAGTACTACACACGTGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * *
38265615 -CAGGTACGCATAGTAGCCTGCACTTAGTACTGCACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
38265664 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
38265714 TCTGGTACACATAGTA-CCTTGCATTTAGTACTACACACATGATCCAAGTTAA
1 TCTGGTACACATAGTAGCC-TGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * *
38265766 --TGGATACCCATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* ** * * *
38265815 TCTGATACATGTAGTAGCTTGCACTTAGTACTACACACGTGATCCAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * *
38265867 --TGGATACCCATAGTAGCCTGCACTTAGTACT-CTACATGCGACCTATCAA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTAC-ACACGTGACCTATCAA
* * *
38265916 TCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC
38265959 TCATAATGGA
Statistics
Matches: 346, Mismatches: 83, Indels: 34
0.75 0.18 0.07
Matches are distributed among these distances:
49 9 0.03
50 228 0.66
51 104 0.30
52 5 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:38265742 original size:151 final size:150
Alignment explanation
Indices: 38265466--38265856 Score: 548
Period size: 151 Copynumber: 2.6 Consensus size: 150
38265456 GAAGCTCTCT
* *
38265466 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * * * * * *
38265531 CTGTACTTAGTAATACACATGTAACTTAACCATCTGATGCACGTAGTAGCGTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTACCGTGCACTTAGTACTA
*
38265596 CACACGTGATCAAAGTTAACA
131 CACACATGATCAAAGTTAA-A
*
38265617 GGTACGCATAGTAGCCTGCACTTAGTACTGCACATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
* * *
38265682 CTGCACTTAGTACTACACACGTGACTTAACCATCTGGTACACATAGTACCTTGCATTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTACCGTGCACTTAGTACTA
* *
38265747 CACACATGATCCAAGTTAAT
131 CACACATGATCAAAGTTAAA
* * * * * * *
38265767 GGATACCCATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTAGTAG
1 GG-TACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAG
*
38265832 CTTGCACTTAGTACTACACACGTGA
65 CCTGCACTTAGTACTACACACGTGA
38265857 TCCAAGTTAA
Statistics
Matches: 214, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
150 2 0.01
151 212 0.99
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTACCGTGCACTTAGTACTA
CACACATGATCAAAGTTAAA
Found at i:38265923 original size:151 final size:151
Alignment explanation
Indices: 38265472--38265959 Score: 461
Period size: 151 Copynumber: 3.2 Consensus size: 151
38265462 CTCTGGTACG
* * * * * * *
38265472 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGTCTGTAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAGTAGCCTGCAC
* * * * * * * * * * *
38265537 TTAGTAATACACATGTAACTTAACCATCTGATGCACGTAGTAGCGTGCACTTAGTACTACACACG
66 TTAGTACTACACACGTGACTCAACCATATGGTACACATAGTACCTTGCACTTAGTACTACACACA
* * * *
38265602 TGATCAAAGTTAACAGG-TACG
131 TGATCCAAGTCAA-TGGATACA
* * * * *
38265623 CATAGTAGCCTGCACTTAGTACTGCACATGTGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAGTAGCCTGCAC
* * *
38265688 TTAGTACTACACACGTGACTTAACCATCTGGTACACATAGTACCTTGCATTTAGTACTACACACA
66 TTAGTACTACACACGTGACTCAACCATATGGTACACATAGTACCTTGCACTTAGTACTACACACA
* *
38265753 TGATCCAAGTTAATGGATACC
131 TGATCCAAGTCAATGGATACA
* * *
38265774 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTAGTAGCTTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAGTAGCCTGCAC
** *
38265839 TTAGTACTACACACGTGA-TCCAA-GTTAATGGATACCCATAGTAGCC-TGCACTTAGTACT-C-
66 TTAGTACTACACACGTGACT-CAACCAT-ATGG-TACACATAGTA-CCTTGCACTTAGTACTACA
* * *
38265899 TACATGCGA-CCTA-TCAATCTGATACA
127 CACAT--GATCCAAGTCAAT-GGATACA
* *
38265925 CGTAGTAGCCTACACTTAGTACTACACACGTGACT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACT
38265960 CATAATGGAT
Statistics
Matches: 291, Mismatches: 38, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
150 12 0.04
151 253 0.87
152 24 0.08
153 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (151 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAGTAGCCTGCAC
TTAGTACTACACACGTGACTCAACCATATGGTACACATAGTACCTTGCACTTAGTACTACACACA
TGATCCAAGTCAATGGATACA
Found at i:38265954 original size:101 final size:101
Alignment explanation
Indices: 38265472--38265957 Score: 436
Period size: 101 Copynumber: 4.8 Consensus size: 101
38265462 CTCTGGTACG
* * * * * * * *
38265472 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGTCTGTAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCAC
* * * * *
38265537 TTAGTAATACACA--TG-T--AACTTAACCATCTGATGCA
66 TTAGTACTACACACGTGATCCAAGTT-A--AT-GGATACC
* * * ** * * * * *
38265572 CGTAGTAGCGTGCACTTAGTACTACACACGTGA-TCAAAGTTAACAGGTACGCATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA-CCATCTGATACACGTAGTAGCCTGC
* * * * *
38265636 ACTTAGTACTGCACATGTGA-CCTA-TCAATCTGG-TACA
64 ACTTAGTACTACACACGTGATCCAAGTTAA--TGGATACC
* * *
38265673 CGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGGTACACATAGTA-CCTTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCC-TGCA
* *
38265737 TTTAGTACTACACACATGATCCAAGTTAATGGATACC
65 CTTAGTACTACACACGTGATCCAAGTTAATGGATACC
* *
38265774 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACATGTAGTAGCTTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCAC
38265839 TTAGTACTACACACGTGATCCAAGTTAATGGATACC
66 TTAGTACTACACACGTGATCCAAGTTAATGGATACC
* * * * * *
38265875 CATAGTAGCCTGCACTTAGTACT-CTACATGCGACCTATCAATCTGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACTTAGTACTAC-ACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
38265939 CTTAGTACTACACACGTGA
65 CTTAGTACTACACACGTGA
38265958 CTCATAATGG
Statistics
Matches: 320, Mismatches: 50, Indels: 31
0.80 0.12 0.08
Matches are distributed among these distances:
99 2 0.01
100 67 0.21
101 239 0.75
102 6 0.02
103 4 0.01
104 1 0.00
105 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (101 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCAC
TTAGTACTACACACGTGATCCAAGTTAATGGATACC
Found at i:38280458 original size:12 final size:12
Alignment explanation
Indices: 38280441--38280465 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38280431 TTTTAAATGA
38280441 ATTTGATTAAAT
1 ATTTGATTAAAT
38280453 ATTTGATTAAAT
1 ATTTGATTAAAT
38280465 A
1 A
38280466 AGTTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATTTGATTAAAT
Found at i:38281508 original size:33 final size:32
Alignment explanation
Indices: 38281466--38281528 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 32
38281456 CTAAGCTAAG
*
38281466 TTAGCTTACTTTGTATATGTTTTTTTTTATATA
1 TTAGCTTACTTTGTATAT-TTTTTTTATATATA
38281499 TTAGCTTACTTTGTATATTTTTTTTATATA
1 TTAGCTTACTTTGTATATTTTTTTTATATA
38281529 ATTGGTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 11 0.38
33 18 0.62
ACGTcount: A:0.22, C:0.06, G:0.08, T:0.63
Consensus pattern (32 bp):
TTAGCTTACTTTGTATATTTTTTTTATATATA
Found at i:38284532 original size:12 final size:15
Alignment explanation
Indices: 38284500--38284533 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
38284490 GAGTAAATTA
38284500 ATGATGTTAATGAAG
1 ATGATGTTAATGAAG
38284515 ATGATGTTAATGAAG
1 ATGATGTTAATGAAG
38284530 ATGA
1 ATGA
38284534 CAAGGCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.26, T:0.32
Consensus pattern (15 bp):
ATGATGTTAATGAAG
Found at i:38294956 original size:11 final size:11
Alignment explanation
Indices: 38294940--38294976 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
38294930 AGGGGCCAGA
38294940 TGGGCCAAAAT
1 TGGGCCAAAAT
*
38294951 TGGGCC-AGA-
1 TGGGCCAAAAT
38294960 TGGGCCAAAAT
1 TGGGCCAAAAT
38294971 TGGGCC
1 TGGGCC
38294977 CAATGGGCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 6 0.27
10 4 0.18
11 12 0.55
ACGTcount: A:0.27, C:0.22, G:0.35, T:0.16
Consensus pattern (11 bp):
TGGGCCAAAAT
Found at i:38294984 original size:20 final size:20
Alignment explanation
Indices: 38294932--38294976 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
38294922 TCGGAAAAAG
38294932 GGGCCAGATGGGCCAAAATT
1 GGGCCAGATGGGCCAAAATT
38294952 GGGCCAGATGGGCCAAAATT
1 GGGCCAGATGGGCCAAAATT
38294972 GGGCC
1 GGGCC
38294977 CAATGGGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.27, C:0.22, G:0.38, T:0.13
Consensus pattern (20 bp):
GGGCCAGATGGGCCAAAATT
Found at i:38296704 original size:14 final size:14
Alignment explanation
Indices: 38296687--38296714 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38296677 AAAAAAAGTT
38296687 AATCAAAACAATGA
1 AATCAAAACAATGA
38296701 AATCAAAACAATGA
1 AATCAAAACAATGA
38296715 TAACGTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.14, G:0.07, T:0.14
Consensus pattern (14 bp):
AATCAAAACAATGA
Found at i:38299631 original size:20 final size:21
Alignment explanation
Indices: 38299593--38299631 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
38299583 ATCCCCAAAG
38299593 CAAAAGATCGACTTACCTCTT
1 CAAAAGATCGACTTACCTCTT
38299614 CAAAACGATC-AC-TACCTC
1 CAAAA-GATCGACTTACCTC
38299632 GAATCAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 7 0.41
22 4 0.24
ACGTcount: A:0.36, C:0.33, G:0.08, T:0.23
Consensus pattern (21 bp):
CAAAAGATCGACTTACCTCTT
Found at i:38304822 original size:13 final size:13
Alignment explanation
Indices: 38304804--38304831 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
38304794 GGAAGGGGAG
38304804 TAAGCTTCAAGCT
1 TAAGCTTCAAGCT
38304817 TAAGCTTCAAGCT
1 TAAGCTTCAAGCT
38304830 TA
1 TA
38304832 GTAAGTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (13 bp):
TAAGCTTCAAGCT
Found at i:38308426 original size:31 final size:31
Alignment explanation
Indices: 38308371--38308449 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
38308361 AAAGTTGGGC
*
38308371 TTGAAAACACCA--AAGGTATCATAAGCATCA
1 TTGAAAACACCATTAA-GAATCATAAGCATCA
38308401 TTGAAAACACCATTAAGAATCATAAGCATCA
1 TTGAAAACACCATTAAGAATCATAAGCATCA
38308432 TTGAAAACACCATTAAGA
1 TTGAAAACACCATTAAGA
38308450 TAGCATCGAA
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
30 12 0.26
31 32 0.70
32 2 0.04
ACGTcount: A:0.48, C:0.19, G:0.11, T:0.22
Consensus pattern (31 bp):
TTGAAAACACCATTAAGAATCATAAGCATCA
Found at i:38317147 original size:42 final size:42
Alignment explanation
Indices: 38317026--38317180 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
38317016 TACCATACCA
* * * * *
38317026 ATGCCATATCCCAGATATGGTTTTACA-TAGGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATTG
* * * * *
38317068 ATGCCAATAGCCCAGCTATGGTCTTACAAGAAATCTCACATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
*
38317111 ATGCCATATCTCAGATATGGTCTTACACGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
38317153 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
38317181 ATAGTCTTAG
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 63 0.66
43 31 0.33
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
Found at i:38325847 original size:57 final size:57
Alignment explanation
Indices: 38325777--38325896 Score: 231
Period size: 57 Copynumber: 2.1 Consensus size: 57
38325767 ATAGCTGAAT
38325777 CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
1 CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
*
38325834 CGACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
1 CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
38325891 CAACCA
1 CAACCA
38325897 TTCTCAATAC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.43, C:0.34, G:0.04, T:0.18
Consensus pattern (57 bp):
CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
Found at i:38326837 original size:45 final size:43
Alignment explanation
Indices: 38326705--38326825 Score: 122
Period size: 45 Copynumber: 2.8 Consensus size: 43
38326695 ATGCTATCTC
* * *
38326705 ATATCAATGCCACTATCCCAGACAGGGTCTTACACGAATCA-A-
1 ATATCAATGCCAC-GTCCCAGACATGGTCTTACACGAACCACAT
* * * *
38326747 ATA-CGATGCCGATGTCCTAGACATGGTCTTACACGTAACCTCAT
1 ATATCAATGCC-ACGTCCCAGACATGGTCTTACACG-AACCACAT
38326791 ATATCAATGCCAACGTCCCAGACATGGTCTTACAC
1 ATATCAATGCC-ACGTCCCAGACATGGTCTTACAC
38326826 AAGAACACAT
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
41 25 0.40
42 7 0.11
43 1 0.02
44 3 0.05
45 27 0.43
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
ATATCAATGCCACGTCCCAGACATGGTCTTACACGAACCACAT
Found at i:38327160 original size:15 final size:15
Alignment explanation
Indices: 38327136--38327165 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
38327126 GTTCTTAATC
38327136 TAAACATATTCAAAT
1 TAAACATATTCAAAT
*
38327151 TAAACTTATTCAAAT
1 TAAACATATTCAAAT
38327166 ATATTTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAACATATTCAAAT
Found at i:38327973 original size:14 final size:15
Alignment explanation
Indices: 38327956--38327984 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
38327946 ACACGAAAAT
38327956 TTCACACA-TATAAA
1 TTCACACATTATAAA
38327970 TTCACACATTATAAA
1 TTCACACATTATAAA
38327985 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:38329040 original size:43 final size:43
Alignment explanation
Indices: 38328961--38329117 Score: 172
Period size: 43 Copynumber: 3.7 Consensus size: 43
38328951 CAATGTCATA
* * * *
38328961 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATG
* * * *
38329004 TCCCAGATAGGGTCTTATACGAAATCATATAACGATGCCAATG
1 TCCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATG
* * *
38329047 TCCTAGACATGGTCTTACACGTAATCACA-ATACAATGCCAATG
1 TCCCAGATATGGTCTTACACGTAATCACATA-ACGATGCCAATG
* * *
38329090 TCCCAAACATGGTCTTACATGTAATCAC
1 TCCCAGATATGGTCTTACACGTAATCAC
38329118 GGTAATCCTA
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
42 1 0.01
43 94 0.99
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATG
Found at i:38331076 original size:42 final size:42
Alignment explanation
Indices: 38330959--38331151 Score: 228
Period size: 42 Copynumber: 4.6 Consensus size: 42
38330949 ATACCAATGA
* * *
38330959 CATATCCCAGATATGGTCTTACATG-AGATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAG-TCTCATATTGATGC
* * * * **
38331001 CAGTAGCCCA-ACTATAGTCTTACACGAAATCTCACATCAATGC
1 CA-TATCCCAGA-TATGGTCTTACACGAAGTCTCATATTGATGC
* *
38331044 CATATCCTAGATATGGTTTTACACGAAGTCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
* *
38331086 CATATCCCAAATATGGTCTTACAAGAAGTCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
38331128 CATATCCCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
38331152 ATAGTCTTAG
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
42 93 0.74
43 32 0.25
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
Found at i:38335333 original size:30 final size:30
Alignment explanation
Indices: 38335299--38335357 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
38335289 ACTTATTTTA
38335299 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
38335329 TTGTTAATTTTGTTATTATTTTAGAGACA
1 TTGTTAATTTTGTTATTATTTTAAAGACA
38335358 AGTGTTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.03, G:0.12, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Done.