Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 141 of 253
Found at i:45174491 original size:49 final size:49
Alignment explanation
Indices: 45174411--45174655 Score: 301
Period size: 49 Copynumber: 4.9 Consensus size: 49
45174401 TAGCCGAAGC
* * * * * *
45174411 TATCTGGTACGCATAATAGCCTACACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
45174460 TATCCGGTACACGTAGTAACCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
45174510 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
** * * **
45174561 TATCAAGTACGCATAGTAGCCTGCACTTAGTACTACACATATGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
45174610 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
45174656 TCACAATAGC
Statistics
Matches: 163, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 79 0.48
50 47 0.29
51 37 0.23
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:45174646 original size:100 final size:99
Alignment explanation
Indices: 45174410--45174654 Score: 312
Period size: 100 Copynumber: 2.5 Consensus size: 99
45174400 ATAGCCGAAG
* * * * * * * ** *
45174410 CTATCTGGTACGCATAATAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGTA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCAAGTACACATA
*
45174475 GTAACCTGCACTTAGTACTACACACGTGACCTAA
66 GTAACCTGCACTTAGTACTACACACATGACCTAA
* * *
45174509 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAAGTACGCA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATCAAGTACACA
* *
45174574 TAGTAGCCTGCACTTAGTACTACACATATGACC-AA
64 TAGTAACCTGCACTTAGTACTACACACATGACCTAA
*
45174609 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
45174655 CTCACAATAG
Statistics
Matches: 125, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 38 0.30
100 47 0.38
101 40 0.32
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (99 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCAAGTACACATA
GTAACCTGCACTTAGTACTACACACATGACCTAA
Found at i:45178846 original size:44 final size:42
Alignment explanation
Indices: 45178783--45178889 Score: 144
Period size: 44 Copynumber: 2.5 Consensus size: 42
45178773 ATGTGTTTTT
*
45178783 GTGTAAGACCACGTCTGGGATGTTAGCATCG-ACTTATGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTAGCATCGTA-TT-TGATTT-C
*
45178827 GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTAGCATCGTATTTGATTTC
**
45178869 GTGTAAGACCTTGTCTGGGAC
1 GTGTAAGACCACGTCTGGGAC
45178890 AGTGGCATCG
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
42 20 0.34
43 6 0.10
44 31 0.53
45 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTAGCATCGTATTTGATTTC
Found at i:45178885 original size:42 final size:42
Alignment explanation
Indices: 45178783--45178940 Score: 167
Period size: 42 Copynumber: 3.7 Consensus size: 42
45178773 ATGTGTTTTT
* *
45178783 GTGTAAGACCACGTCTGGGATGTTAGCATCGACTTATGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGA-TT-TGATTTAC
45178827 GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTT-C
1 GTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTTGATTTAC
** * *
45178869 GTGTAAGACCTTGTCTGGGACAG-TGGCATCGATTTTTAATTAC
1 GTGTAAGACCACGTCTGGGAC-GTTGGCATCGA-TTTGATTTAC
* * * *
45178912 ATGTAAGACGACATTTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
45178941 TGTACAAGCT
Statistics
Matches: 97, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 35 0.36
43 29 0.30
44 31 0.32
45 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGATTTAC
Found at i:45185275 original size:15 final size:15
Alignment explanation
Indices: 45185255--45185306 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
45185245 ACTACAAAAC
45185255 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
45185270 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
45185289 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
45185304 ATT
1 ATT
45185307 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:45185370 original size:16 final size:16
Alignment explanation
Indices: 45185339--45185375 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
45185329 ATGTGAATAA
45185339 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
45185355 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
45185371 TATTA
1 TATTA
45185376 AAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:45185427 original size:22 final size:22
Alignment explanation
Indices: 45185385--45185442 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
45185375 AAAATAAAAA
*
45185385 TAAAATATTAAA-TA-ATTTAT
1 TAAAATAATAAATTATATTTAT
45185405 TAAAATAATAAATTATATTTAT
1 TAAAATAATAAATTATATTTAT
* * *
45185427 TATATTAATAATTTAT
1 TAAAATAATAAATTAT
45185443 TATATGACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.34
21 2 0.06
22 19 0.59
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TAAAATAATAAATTATATTTAT
Found at i:45185526 original size:6 final size:6
Alignment explanation
Indices: 45185515--45185545 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
45185505 TAAATATTTT
45185515 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA T
45185546 TATTATCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:45187286 original size:22 final size:22
Alignment explanation
Indices: 45187261--45187302 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
45187251 TAACAACCCA
*
45187261 AAGACTTAAATGAAAATTTTTG
1 AAGAATTAAATGAAAATTTTTG
*
45187283 AAGAATTAAATGATAATTTT
1 AAGAATTAAATGAAAATTTT
45187303 ATGACATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.02, G:0.12, T:0.38
Consensus pattern (22 bp):
AAGAATTAAATGAAAATTTTTG
Found at i:45194459 original size:20 final size:21
Alignment explanation
Indices: 45194430--45194473 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
45194420 ATTAAAACTT
* * *
45194430 AAAATCAATATAAACTTATAA
1 AAAATCAATAAAAAATAATAA
45194451 AAAAT-AATAAAAAATAATAA
1 AAAATCAATAAAAAATAATAA
45194471 AAA
1 AAA
45194474 CTTGTAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAATCAATAAAAAATAATAA
Found at i:45194629 original size:19 final size:18
Alignment explanation
Indices: 45194602--45194658 Score: 73
Period size: 17 Copynumber: 3.2 Consensus size: 18
45194592 AAAAAAGAGA
45194602 AAAAT-ATAAAAATTATT
1 AAAATAATAAAAATTATT
45194619 AGAAATAATAAAAATTATT
1 A-AAATAATAAAAATTATT
* *
45194638 -AAATATTAAAAAATATT
1 AAAATAATAAAAATTATT
45194655 AAAA
1 AAAA
45194659 AAATCATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
17 16 0.46
18 7 0.20
19 12 0.34
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
AAAATAATAAAAATTATT
Found at i:45194781 original size:20 final size:21
Alignment explanation
Indices: 45194744--45194792 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
45194734 AGATATATTT
45194744 AAAATATTACAAAAACTTATA
1 AAAATATTACAAAAACTTATA
* *
45194765 AAAAT-TTATAAATACTTATA
1 AAAATATTACAAAAACTTATA
45194785 AATAATAT
1 AA-AATAT
45194793 AAAAATTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 15 0.62
21 8 0.33
22 1 0.04
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAATATTACAAAAACTTATA
Found at i:45194817 original size:48 final size:47
Alignment explanation
Indices: 45194675--45194829 Score: 129
Period size: 48 Copynumber: 3.2 Consensus size: 47
45194665 TAAAACCTTG
* * * * *
45194675 TAAAGATTATAAAAAATCTAATAAATTTTAATAAATTATTAAAATATA
1 TAAATATTATAAATAATATAA-AAATTCTAATAAATTATTAAAATTTA
* * *
45194723 TATAAT-TAATAAGATATATTTAAAATATTAC-AA-AAACTTATAAAAATTTA
1 TA-AATATTATAA-ATA-ATATAAAA-ATT-CTAATAAA-TTATTAAAATTTA
45194773 TAAATACTTATAAATAATATAAAAATTCTAATAAATTATTAAAATATTA
1 TAAATA-TTATAAATAATATAAAAATTCTAATAAATTATTAAAAT-TTA
45194822 -AAATATTA
1 TAAATATTA
45194830 AAAAAATTAT
Statistics
Matches: 86, Mismatches: 10, Indels: 23
0.72 0.08 0.19
Matches are distributed among these distances:
47 4 0.05
48 26 0.30
49 25 0.29
50 26 0.30
51 5 0.06
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (47 bp):
TAAATATTATAAATAATATAAAAATTCTAATAAATTATTAAAATTTA
Found at i:45194835 original size:38 final size:37
Alignment explanation
Indices: 45194742--45194840 Score: 103
Period size: 38 Copynumber: 2.6 Consensus size: 37
45194732 TAAGATATAT
*
45194742 TTAAAATATTACAAAAACTTATAAAAATTTATAAATAC
1 TTAAAATATTA-AAAAAATTATAAAAATTTATAAATAC
* * *
45194780 TTATAAATAATATAAAAATTCTAATAAA-TTATTAAAATA-
1 TTA-AAATATTAAAAAAATTATAA-AAATTTA-T-AAATAC
45194819 TTAAAATATTAAAAAAATTATA
1 TTAAAATATTAAAAAAATTATA
45194841 TAGACATAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
38 31 0.62
39 14 0.28
40 5 0.10
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (37 bp):
TTAAAATATTAAAAAAATTATAAAAATTTATAAATAC
Found at i:45195429 original size:10 final size:9
Alignment explanation
Indices: 45195414--45195489 Score: 55
Period size: 10 Copynumber: 7.9 Consensus size: 9
45195404 CTAGTTCAAA
45195414 TTTTTATGAT
1 TTTTTAT-AT
45195424 TTTTTATAT
1 TTTTTATAT
45195433 TTTTTAATAT
1 TTTTT-ATAT
* *
45195443 TTTATATCAA
1 TTTTTAT-AT
*
45195453 TTTTAATAT
1 TTTTTATAT
45195462 TTTTT-TAATT
1 TTTTTAT-A-T
*
45195472 TTTTTATGAA
1 TTTTTAT-AT
45195482 TTTTTATA
1 TTTTTATA
45195490 AGTTCTTAAG
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
8 1 0.02
9 16 0.30
10 34 0.64
11 2 0.04
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.68
Consensus pattern (9 bp):
TTTTTATAT
Found at i:45195438 original size:19 final size:19
Alignment explanation
Indices: 45195414--45195490 Score: 61
Period size: 19 Copynumber: 3.9 Consensus size: 19
45195404 CTAGTTCAAA
45195414 TTTTTATGATTTTTTAT-AT
1 TTTTTAT-ATTTTTTATAAT
*
45195433 TTTTTAATATTTTATATCAA-
1 TTTTT-ATATTTTTTAT-AAT
*
45195453 TTTTAATATTTTTT-TAATT
1 TTTTTATATTTTTTATAA-T
*
45195472 TTTTTATGAATTTTTATAA
1 TTTTTAT-ATTTTTTATAA
45195491 GTTCTTAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
17 2 0.04
18 1 0.02
19 27 0.59
20 12 0.26
21 4 0.09
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTATATTTTTTATAAT
Found at i:45195498 original size:29 final size:30
Alignment explanation
Indices: 45195414--45195534 Score: 97
Period size: 29 Copynumber: 4.1 Consensus size: 30
45195404 CTAGTTCAAA
*
45195414 TTTTTATGATTTTTTAT-ATTTTTTAATAT
1 TTTTTATGAATTTTTATAATTTTTTAATAT
* * * *
45195443 TTTATATCAATTTTAATATTTTTTTAAT-T
1 TTTTTATGAATTTTTATAATTTTTTAATAT
* * * *
45195472 TTTTTATGAATTTTTATAAGTTCTTAAGAA
1 TTTTTATGAATTTTTATAATTTTTTAATAT
* *
45195502 ATTTTAT-ACGTTTTTA-AATTTTTTTAATAT
1 TTTTTATGA-ATTTTTATAA-TTTTTTAATAT
45195532 TTT
1 TTT
45195535 AAATATGTTT
Statistics
Matches: 68, Mismatches: 20, Indels: 7
0.72 0.21 0.07
Matches are distributed among these distances:
29 38 0.56
30 30 0.44
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (30 bp):
TTTTTATGAATTTTTATAATTTTTTAATAT
Found at i:45195518 original size:20 final size:20
Alignment explanation
Indices: 45195472--45195518 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
45195462 TTTTTTAATT
* *
45195472 TTTTTATGAATTTTTATAAG
1 TTTTTAAGAAATTTTATAAG
* *
45195492 TTCTTAAGAAATTTTATACG
1 TTTTTAAGAAATTTTATAAG
45195512 TTTTTAA
1 TTTTTAA
45195519 ATTTTTTTAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.55
Consensus pattern (20 bp):
TTTTTAAGAAATTTTATAAG
Found at i:45195798 original size:17 final size:18
Alignment explanation
Indices: 45195776--45195809 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
45195766 AGTTGAATTG
45195776 AAATTGCG-AAATTAAAT
1 AAATTGCGAAAATTAAAT
45195793 AAATTGCGAAAATTAAA
1 AAATTGCGAAAATTAAA
45195810 ATGGAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.26
Consensus pattern (18 bp):
AAATTGCGAAAATTAAAT
Found at i:45196851 original size:661 final size:661
Alignment explanation
Indices: 45195544--45196839 Score: 1836
Period size: 661 Copynumber: 2.0 Consensus size: 661
45195534 TAAATATGTT
* * ** * *
45195544 TTTGATGCGGTCGTTGAGAGCACCAAAAATATCCTATTCCTTGTAAAATAGTAAAAATAACAATA
1 TTTGATGCGATCATTGAGAGCACCAAAAATATCCTATTCCTTAAAAAATAATAAAAAGAACAATA
* * * * *
45195609 AAGGGGAAGTAGAGTCGAATCCTTAGGGACCGGATTGTACGAATGCTCGTTTCTTGAAATCCTAG
66 AAGGGGAAGTAGAGTCGAATCCTCAGGGACCGGATCGCACGAATGCTCATTTCTCGAAATCCTAG
* * * *
45195674 ACAATTTCTTAGCTAAGAAAACCTGCGTTCCTGAAAAATAAAAATAAAACAGAATTTAAATAATT
131 ACAATATCATAGCCAAGAAAACCTGCGTTCCTGAAAAATAAAAATAAAACAG-ATTTAAATAATG
* * * *
45195739 TAAAAATAAAATAAAAACAGAATTTAAAGTTGAATTGAAATTGCGAAATTAAATAAATTGCGAAA
195 GAAAAATAAAATAAAAACAGAATTGAAAGTCGAATTGAAATTACGAAATTAAATAAATTGCGAAA
* *
45195804 ATTAAAATGGAGAATATAAAAATAAACAGAGTTTGGAAAAAGGGAGTTTCTTATGTGGCGAGATT
260 ATTAAAATGGAGAATATAAAAATAAACAGAGTTTGGAAAAAGAGAGTTTCTTATGTGGCAAGATT
*
45195869 CCAACCTCCAGTTGTCTCGATCCGCCTTGAGTTCAATCCTTGGCCTTTAAGTAACCCTTCTCGAG
325 CCAACCTCCAGTTGTCTCGATCCGCCTTGAGTTCAATCCTTGGCCTTTAAGTAACCCTTCTCAAG
45195934 CAGGATAAGCCAATTATAGTGGAAGAGGACGCCTACGACCACCAGCTCCAAGAATTTAGACTTAA
390 CAGGATAAGCCAATTATAGTGGAAGAGGACGCCTACGACCACCAGCTCCAAGAATTTAGACTTAA
* * * * *
45195999 GATTTGACGGAACCTGACTCTAGTCGATAATCACTTTTGTGGGGCTATCTTCCACTAGACCATCA
455 GATTTGACGGAACCTAACTCTAGCCAATAATCACTTTTGTAGGACTATCTTCCACTAGACCATCA
* * * *
45196064 CTTCTCAACGGCGAATACCACGCCGTTTTGTCTCTTGGATTCGCCAACCTCTGACGCAGAAAGCC
520 CTTCCCAACGGCGAATACCACGCCGTTTTGTCTCTTGGATTCACCAACCTCTAAAGCAGAAAGCC
*
45196129 AACGAACCGACTATGCAACCTTCCCAAAATGTACAAAGCGGTCATTCCTTACACAAGTTGAAAAG
585 AACGAACCGACTATGCAACCTTCCCAAAATGTACAAAGCGGCCATTCCTTACACAAGTTGAAAAG
45196194 ATCTCCTCAAAA
650 ATCTCCTCAAAA
* *
45196206 TTTGATGCGATCATTGAGAGCACCAAAAATATCCTATTTCC-TAAAAAATAATGAACAAGAACAG
1 TTTGATGCGATCATTGAGAGCACCAAAAATATCCTA-TTCCTTAAAAAATAAT-AAAAAGAACAA
* * * * * *
45196270 TAAAGGGGAAGTAGGGTCGAATCCTCAGGGATCGGATCGCATGAATGTTTATTTCTCGAAATCTT
64 TAAAGGGGAAGTAGAGTCGAATCCTCAGGGACCGGATCGCACGAATGCTCATTTCTCGAAATCCT
* * **
45196335 AGGCAGA-ATCAT-GCCCAAGAAAACCTGCGTTCCTGAAAAA-AACAGAATTAAA-AG-TTTTGA
129 AGACA-ATATCATAG-CCAAGAAAACCTGCGTTCCTGAAAAATAA-A-AATAAAACAGATTTAAA
*
45196395 T-CTGGAAAAATAAAATAAAAACAGAATTGAAAGTCGAATTGAAATTACGAAATTAAATAAATTG
190 TAATGGAAAAATAAAATAAAAACAGAATTGAAAGTCGAATTGAAATTACGAAATTAAATAAATTG
* *
45196459 CTAAAATTAAAATGGAGAATATAAAAATAAACAGAGTTTGGGAAGAGAGAGAGTTTCTTATGTGG
255 CGAAAATTAAAATGGAGAATATAAAAATAAACAGAGTTT-GGAA-AAAGAGAGTTTCTTATGTGG
* * * * * * * *
45196524 TAAGATTCCAGCCTTC-GATTGTCTTGATTCGCCTTGGGTTTAATCCTTGGCTTTTAAGTAACCC
318 CAAGATTCCAACCTCCAG-TTGTCTCGATCCGCCTTGAGTTCAATCCTTGGCCTTTAAGTAACCC
* *
45196588 TTCTCAAGCA-GATAAGCCAGTTATAGTGGAAGAGGACGCCTACGACCACCAGCTCTAAGAATTT
382 TTCTCAAGCAGGATAAGCCAATTATAGTGGAAGAGGACGCCTACGACCACCAGCTCCAAGAATTT
* * *
45196652 AGACTTAAGATTTGGCGGAACCTAACTCTAGCCAATAATCGCTTTTGTAGGACTATCTTCTACTA
447 AGACTTAAGATTTGACGGAACCTAACTCTAGCCAATAATCACTTTTGTAGGACTATCTTCCACTA
* * * *
45196717 GATCATCACTTCCCAATGGCGAATACCATGCCGTTTTGTCTCTTGGATTCACCAACTTCTAAAGC
512 GACCATCACTTCCCAACGGCGAATACCACGCCGTTTTGTCTCTTGGATTCACCAACCTCTAAAGC
* * *
45196782 AGAAAGCCAATGAACCGACTGTGCAACCTTCCCAAAATGTACAAAGCGGCCGTTCCTT
577 AGAAAGCCAACGAACCGACTATGCAACCTTCCCAAAATGTACAAAGCGGCCATTCCTT
45196840 GTATAAGTTG
Statistics
Matches: 558, Mismatches: 67, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
660 95 0.17
661 230 0.41
662 125 0.22
663 101 0.18
664 7 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (661 bp):
TTTGATGCGATCATTGAGAGCACCAAAAATATCCTATTCCTTAAAAAATAATAAAAAGAACAATA
AAGGGGAAGTAGAGTCGAATCCTCAGGGACCGGATCGCACGAATGCTCATTTCTCGAAATCCTAG
ACAATATCATAGCCAAGAAAACCTGCGTTCCTGAAAAATAAAAATAAAACAGATTTAAATAATGG
AAAAATAAAATAAAAACAGAATTGAAAGTCGAATTGAAATTACGAAATTAAATAAATTGCGAAAA
TTAAAATGGAGAATATAAAAATAAACAGAGTTTGGAAAAAGAGAGTTTCTTATGTGGCAAGATTC
CAACCTCCAGTTGTCTCGATCCGCCTTGAGTTCAATCCTTGGCCTTTAAGTAACCCTTCTCAAGC
AGGATAAGCCAATTATAGTGGAAGAGGACGCCTACGACCACCAGCTCCAAGAATTTAGACTTAAG
ATTTGACGGAACCTAACTCTAGCCAATAATCACTTTTGTAGGACTATCTTCCACTAGACCATCAC
TTCCCAACGGCGAATACCACGCCGTTTTGTCTCTTGGATTCACCAACCTCTAAAGCAGAAAGCCA
ACGAACCGACTATGCAACCTTCCCAAAATGTACAAAGCGGCCATTCCTTACACAAGTTGAAAAGA
TCTCCTCAAAA
Found at i:45197215 original size:10 final size:10
Alignment explanation
Indices: 45197188--45197237 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
45197178 TTAAATTCTA
45197188 AAAGATAAAT
1 AAAGATAAAT
*
45197198 ACAA-ATAATT
1 A-AAGATAAAT
*
45197208 AAAGATAATT
1 AAAGATAAAT
45197218 AAAGATAAAT
1 AAAGATAAAT
*
45197228 AAAAATAAAT
1 AAAGATAAAT
45197238 CCTAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:45197269 original size:13 final size:13
Alignment explanation
Indices: 45197251--45197287 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
45197241 AAATTTAAAT
45197251 TAAATAATTATCC
1 TAAATAATTATCC
*
45197264 TTAATAATTATCC
1 TAAATAATTATCC
45197277 TAATATAATTA
1 TAA-ATAATTA
45197288 AACATTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 14 0.67
14 7 0.33
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (13 bp):
TAAATAATTATCC
Found at i:45197867 original size:9 final size:9
Alignment explanation
Indices: 45197853--45197898 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
45197843 TATTAATATG
45197853 TCTTTTTTT
1 TCTTTTTTT
45197862 TCTTTTTTT
1 TCTTTTTTT
* *
45197871 TCCTCTTTT
1 TCTTTTTTT
*
45197880 CCTCTTTTTT
1 TCT-TTTTTT
45197890 TCTTTTTTT
1 TCTTTTTTT
45197899 AATTTAATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
9 23 0.77
10 7 0.23
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:45198080 original size:96 final size:97
Alignment explanation
Indices: 45197915--45198096 Score: 276
Period size: 96 Copynumber: 1.9 Consensus size: 97
45197905 ATTTAATTTA
* * * * *
45197915 TTTATTTTTACTTAGGAATATATTGAACCTTTTGACGCGAAGAGAGGTGATAGCCAAGAACCCCA
1 TTTATTTTTACTTAAGAACATATTGAACCTTTTGACGCGAAGAGAGATAACAGCCAAGAACCCCA
45197980 CCCCGATTACTCAGCCCAACATACTCCTAATT
66 CCCCGATTACTCAGCCCAACATACTCCTAATT
* * *
45198012 TTTA-TTTTGCTTAAGAACATATTGAACCTTTTGACGCGAAGAGAGATAACAGCCAAGCACCTCA
1 TTTATTTTTACTTAAGAACATATTGAACCTTTTGACGCGAAGAGAGATAACAGCCAAGAACCCCA
*
45198076 CCCCGGTTACTCAGCCCAACA
66 CCCCGATTACTCAGCCCAACA
45198097 CATTCTTAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
96 72 0.95
97 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (97 bp):
TTTATTTTTACTTAAGAACATATTGAACCTTTTGACGCGAAGAGAGATAACAGCCAAGAACCCCA
CCCCGATTACTCAGCCCAACATACTCCTAATT
Found at i:45199170 original size:15 final size:15
Alignment explanation
Indices: 45199150--45199201 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
45199140 TTAATATCCA
45199150 AATAAAGTAATAAAT
1 AATAAAGTAATAAAT
* *
45199165 AATAAAATAA-AATAA
1 AATAAAGTAATAA-AT
45199180 AATAAAGTAATAAAT
1 AATAAAGTAATAAAT
*
45199195 AAAAAAG
1 AATAAAG
45199202 AAAATAGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
14 2 0.07
15 26 0.87
16 2 0.07
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (15 bp):
AATAAAGTAATAAAT
Found at i:45199183 original size:30 final size:29
Alignment explanation
Indices: 45199149--45199207 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 29
45199139 ATTAATATCC
*
45199149 AAATAAAGTAATAAATAATAAAATAAAATA
1 AAATAAAGTAATAAATAA-AAAAGAAAATA
45199179 AAATAAAGTAATAAATAAAAAAGAAAATA
1 AAATAAAGTAATAAATAAAAAAGAAAATA
45199208 GTAAGTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (29 bp):
AAATAAAGTAATAAATAAAAAAGAAAATA
Found at i:45199227 original size:22 final size:22
Alignment explanation
Indices: 45199164--45199228 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 22
45199154 AAGTAATAAA
*
45199164 TAATAAAATAAAATAAAATAAAG
1 TAATAAAATAAAATAAAA-ATAG
*
45199187 TAAT-AAATAAAAAAGAAAATAG
1 TAATAAAATAAAATA-AAAATAG
45199209 TAAGTAAAAT-AAATAAAAAT
1 TAA-TAAAATAAAATAAAAAT
45199229 CAAAATCAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
22 20 0.56
23 12 0.33
24 4 0.11
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (22 bp):
TAATAAAATAAAATAAAAATAG
Found at i:45202916 original size:10 final size:10
Alignment explanation
Indices: 45202871--45202930 Score: 68
Period size: 10 Copynumber: 6.0 Consensus size: 10
45202861 TTAAATTCTA
45202871 AAAGATAAAT
1 AAAGATAAAT
45202881 ACAA-ATAAAT
1 A-AAGATAAAT
* *
45202891 AAAGACAATT
1 AAAGATAAAT
*
45202901 AAAGATAATT
1 AAAGATAAAT
45202911 AAAGATAAAT
1 AAAGATAAAT
*
45202921 AAAAATAAAT
1 AAAGATAAAT
45202931 CCTAAATTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.68, C:0.03, G:0.07, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:45202980 original size:14 final size:13
Alignment explanation
Indices: 45202944--45202981 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
45202934 AAATTTAAAT
45202944 CTAAATAATTATC
1 CTAAATAATTATC
*
45202957 CTTAATAATTATC
1 CTAAATAATTATC
45202970 CTAATATAATTA
1 CTAA-ATAATTA
45202982 AACATTAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:45203323 original size:19 final size:18
Alignment explanation
Indices: 45203254--45203323 Score: 56
Period size: 19 Copynumber: 3.9 Consensus size: 18
45203244 GTATTATTAG
*
45203254 TTTTTATTAATTTTATAAA
1 TTTTTA-TAAGTTTATAAA
* *
45203273 TTTTTATAAATTT-TAGA
1 TTTTTATAAGTTTATAAA
*
45203290 --TTTATTAGATTTATAATA
1 TTTTTATAAG-TTTATAA-A
45203308 TTTTTATAAGTTTATA
1 TTTTTATAAGTTTATA
45203324 TCAAATTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
15 6 0.15
16 3 0.08
17 5 0.12
18 7 0.17
19 12 0.30
20 7 0.17
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTTATAAGTTTATAAA
Found at i:45203959 original size:20 final size:20
Alignment explanation
Indices: 45203901--45203973 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 20
45203891 TTTGGCATAT
45203901 CAAAATTTCTAATG-GATAC
1 CAAAATTTCTAATGCGATAC
* * *
45203920 CAAAATTTCTCA-CCAAATAC
1 CAAAATTTCTAATGC-GATAC
*
45203940 CAAAATTTTTAATGCGATAC
1 CAAAATTTCTAATGCGATAC
* *
45203960 CAATATTTCAAATG
1 CAAAATTTCTAATG
45203974 AAAATCGTTA
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
19 11 0.27
20 29 0.71
21 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (20 bp):
CAAAATTTCTAATGCGATAC
Found at i:45215511 original size:46 final size:47
Alignment explanation
Indices: 45215381--45215639 Score: 250
Period size: 46 Copynumber: 5.5 Consensus size: 47
45215371 GAGGTCGAGC
* * * *
45215381 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATC-CATGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT-ACATCTCGTA-GCCGATG
*
45215430 CCATGTCCCAGACATGATCTTACACT-G-AC-ACATCTCGTAGCCGATG
1 -CATGTCCCAGACATG-TCTTACACTAGCTCTACATCTCGTAGCCGATG
45215476 CATGTCCCAGACATGTCTTACACTAGCT-TACATCTCG-AGACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGTAG-CCGATG
* *
45215522 CATGTCCTAGACATGTCTTACACTAGCTCT-CATCTCAATA-CCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTC-GTAGCCGATG
* * * *
45215568 CCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTACAT-CTCGTAGCCGATG
*
45215616 CATGTCCTAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
45215640 GGCACACAAA
Statistics
Matches: 180, Mismatches: 16, Indels: 30
0.80 0.07 0.13
Matches are distributed among these distances:
44 9 0.05
45 18 0.10
46 75 0.42
47 27 0.15
48 26 0.14
49 3 0.02
50 22 0.12
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGTAGCCGATG
Found at i:45215588 original size:94 final size:92
Alignment explanation
Indices: 45215281--45215645 Score: 309
Period size: 94 Copynumber: 3.9 Consensus size: 92
45215271 GTATAATGCT
* * * * * *
45215281 GATGCCATGTCCCAAATATGGTCTTACACTGGCTC-ATC-TATCAAGTCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTA-CATATCGAGCCGATG-CATGTCCTAGA
** * *
45215344 CATGGTCTTACACTGACTATCGAAATCGA-GGTC
64 CAT-GTCTTACACTGAC-A-C-ATCTC-ATAGCC
* * * *
45215377 GA-GCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCATGTCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATATCGA-GCCGATG-CATGTCCTAG
*
45215441 ACATGATCTTACACTGACACATCTCGTAGCC
63 ACATG-TCTTACACTGACACATCTCATAGCC
*
45215472 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACATCTCGAGACCGATGCATGTCCTAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCGAG-CCGATGCATGTCCTAGAC
* *
45215534 ATGTCTTACACTAGCTCTCATCTCAATA-CC
65 ATGTCTTACACT-G-ACACATCTC-ATAGCC
* * *
45215564 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACAT-ATCG-AGCCGATGCATGTCCTAGA
*
45215627 CATGTCTTACACTGGCACA
64 CATGTCTTACACTGACACA
45215646 CAAATAACCC
Statistics
Matches: 229, Mismatches: 24, Indels: 36
0.79 0.08 0.12
Matches are distributed among these distances:
90 9 0.04
91 16 0.07
92 28 0.12
93 17 0.07
94 61 0.27
95 51 0.22
96 5 0.02
97 8 0.03
98 34 0.15
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (92 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCGAGCCGATGCATGTCCTAGACA
TGTCTTACACTGACACATCTCATAGCC
Found at i:45215640 original size:46 final size:48
Alignment explanation
Indices: 45215281--45215642 Score: 245
Period size: 46 Copynumber: 7.7 Consensus size: 48
45215271 GTATAATGCT
* * ** *
45215281 GATGCCATGTCCCAAATATGGTCTTACACTGGCTCATC-T-ATC-AAGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTC-TCATAATCGTGGCC
* * * *
45215328 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCGA-AATCGAGGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTC-ATAATCGTGGCC
* * * * *
45215377 GA-GCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCAT-GTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATA-AT-CGTGGCC
* * * *
45215426 GATGCCATGTCCCAGACATGATCTTACACT-G-ACACAT-CTCGTAGCC
1 GATGCCATGTCCCAGACATG-TCTTACACTGGCTCTCATAATCGTGGCC
* * * *
45215472 GATG-CATGTCCCAGACATGTCTTACACTAGCT-TACAT-CTCGAGACC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCT-CATAATCGTGGCC
* * * * *
45215518 GATG-CATGTCCTAGACATGTCTTACACTAGCTCTCAT-CTCAAT-ACC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAATC-GTGGCC
*
45215564 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATCGTGGCC
*
45215612 GATG-CATGTCCTAGACATGTCTTACACTGGC
1 GATGCCATGTCCCAGACATGTCTTACACTGGC
45215643 ACACAAATAA
Statistics
Matches: 262, Mismatches: 34, Indels: 39
0.78 0.10 0.12
Matches are distributed among these distances:
44 9 0.03
45 18 0.07
46 75 0.29
47 58 0.22
48 61 0.23
49 16 0.06
50 25 0.10
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAATCGTGGCC
Found at i:45225082 original size:41 final size:42
Alignment explanation
Indices: 45224969--45225082 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
45224959 AGGAATTAAG
*
45224969 AAATCTGAGCTCATTGAGTGGTCCGAGTTCGTGATATATGTGA
1 AAATCTGAGCTCA-TGAGTGGTCCAAGTTCGTGATATATGTGA
* * **
45225012 AAATCCGAACTTGTTGAGTGGTCCAAGTTCGTGATATATGT-A
1 AAATCTGAGC-TCATGAGTGGTCCAAGTTCGTGATATATGTGA
** *
45225054 GCATCTTAGCTCATGAGTGGTCCAAGTTC
1 AAATCTGAGCTCATGAGTGGTCCAAGTTC
45225083 ATTCTGGATG
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
41 17 0.29
42 6 0.10
43 34 0.59
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
AAATCTGAGCTCATGAGTGGTCCAAGTTCGTGATATATGTGA
Found at i:45229951 original size:37 final size:38
Alignment explanation
Indices: 45229901--45229975 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
45229891 AAAGTTAGGG
45229901 GCAAAATGGTAATTTT-CCTAGGTTGTAAATTGAGTCC
1 GCAAAATGGTAATTTTGCCTAGGTTGTAAATTGAGTCC
45229938 GCAAAATGGTAATTTTGCCTAGGTTGTAAATTGAGTCC
1 GCAAAATGGTAATTTTGCCTAGGTTGTAAATTGAGTCC
45229976 ACTTGAATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 16 0.43
38 21 0.57
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (38 bp):
GCAAAATGGTAATTTTGCCTAGGTTGTAAATTGAGTCC
Found at i:45231377 original size:16 final size:16
Alignment explanation
Indices: 45231356--45231393 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
45231346 TAGTAAATTG
45231356 GAAGCTCGTTGGATTA
1 GAAGCTCGTTGGATTA
*
45231372 GAAGCTCGTTGGATTG
1 GAAGCTCGTTGGATTA
45231388 GAAGCT
1 GAAGCT
45231394 TGGCGAAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.13, G:0.34, T:0.29
Consensus pattern (16 bp):
GAAGCTCGTTGGATTA
Found at i:45232221 original size:46 final size:46
Alignment explanation
Indices: 45232149--45232377 Score: 273
Period size: 46 Copynumber: 5.0 Consensus size: 46
45232139 TTCGACATGA
* * * * * *
45232149 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
* * * ** * ** *
45232195 TTCCATGGTATCATTCAACCAAGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-TCTATCAGGT
*
45232242 TGCCATGGTATCTTTCAACCATGGTCTTAAACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGT
45232288 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGT
45232334 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAG
45232378 AGAGCACACT
Statistics
Matches: 160, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
45 1 0.01
46 120 0.75
47 39 0.24
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGT
Found at i:45232308 original size:93 final size:92
Alignment explanation
Indices: 45232149--45232377 Score: 289
Period size: 93 Copynumber: 2.5 Consensus size: 92
45232139 TTCGACATGA
* * * * * * *
45232149 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTTCCATGGTATCATTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCATTCAAC
** * *
45232214 CAAGGTCTTATTCATTTCCCCGTCACGT
66 CAAGGTCTTACACATTT-CACATCACGT
* *
45232242 TGCCATGGTATCTTTCAACCATGGTCTTAAACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGTTGCCATGGTATCATTCAA
* * *
45232306 CCATGGTCTTACACATTTCATATCAGGT
65 CCAAGGTCTTACACATTTCACATCACGT
45232334 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAG
45232378 AGAGCACACT
Statistics
Matches: 117, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
92 48 0.41
93 69 0.59
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCATTCAAC
CAAGGTCTTACACATTTCACATCACGT
Found at i:45234805 original size:40 final size:40
Alignment explanation
Indices: 45234722--45235063 Score: 494
Period size: 40 Copynumber: 8.6 Consensus size: 40
45234712 TTGAATGCTG
* * * * * *
45234722 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* *
45234762 TCCGGATTAAGAT-CCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
45234802 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
45234842 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
45234882 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
45234922 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
45234961 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
45235001 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
45235040 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
45235064 TGAACGAGGA
Statistics
Matches: 279, Mismatches: 19, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
39 72 0.26
40 200 0.72
41 7 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:45243170 original size:43 final size:43
Alignment explanation
Indices: 45243123--45243215 Score: 150
Period size: 43 Copynumber: 2.2 Consensus size: 43
45243113 AGGCTTGAAA
* *
45243123 CCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCCCGAAG
1 CCCGATATCATCTCACCAGCATTATAGCCTGCTAGGCCCGAAG
* *
45243166 CCCGATATTATCTCACCAGCATTATAGCCTGTTAGGCCCGAAG
1 CCCGATATCATCTCACCAGCATTATAGCCTGCTAGGCCCGAAG
45243209 CCCGATA
1 CCCGATA
45243216 ATATTATTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (43 bp):
CCCGATATCATCTCACCAGCATTATAGCCTGCTAGGCCCGAAG
Found at i:45255949 original size:40 final size:41
Alignment explanation
Indices: 45255894--45255987 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
45255884 TTGTAATAGT
* *
45255894 TCAAACGAAAAGGTTGAAAAGGAT-ATATGCAAAAAGGATA
1 TCAAATGAAAAGGTTGAAAAGGATGATATACAAAAAGGATA
* * * *
45255934 TCAAATGAAAAGGTTGAAAATGATGTTCTACATAAAGGATA
1 TCAAATGAAAAGGTTGAAAAGGATGATATACAAAAAGGATA
*
45255975 ACAAATGAAAAGG
1 TCAAATGAAAAGG
45255988 ATGTATTTGA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 22 0.48
41 24 0.52
ACGTcount: A:0.51, C:0.07, G:0.21, T:0.20
Consensus pattern (41 bp):
TCAAATGAAAAGGTTGAAAAGGATGATATACAAAAAGGATA
Found at i:45258165 original size:20 final size:20
Alignment explanation
Indices: 45258140--45258182 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
45258130 ACCATATTCT
*
45258140 ATTTTTA-AAATTTAAAATTA
1 ATTTTTAGAAAATT-AAATTA
45258160 ATTTTTAGAAAATTAAATTA
1 ATTTTTAGAAAATTAAATTA
45258180 ATT
1 ATT
45258183 AGAAGTATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
ATTTTTAGAAAATTAAATTA
Found at i:45258502 original size:14 final size:14
Alignment explanation
Indices: 45258485--45258526 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
45258475 TAATTATTTC
45258485 AGAAAAAAAGTAAA
1 AGAAAAAAAGTAAA
*
45258499 AGAAAAAGAG-AAA
1 AGAAAAAAAGTAAA
*
45258512 AG-TAAAAAGTAAA
1 AGAAAAAAAGTAAA
45258525 AG
1 AG
45258527 GTAAATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
12 5 0.21
13 10 0.42
14 9 0.38
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (14 bp):
AGAAAAAAAGTAAA
Found at i:45258546 original size:11 final size:12
Alignment explanation
Indices: 45258491--45258554 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
45258481 TTTCAGAAAA
*
45258491 AAAGTAAAAGAA
1 AAAGTAAAAGAT
* *
45258503 AAAGAGAAAAGTAA
1 AAAG-TAAAAG-AT
*
45258517 AAAGTAAAAGGT
1 AAAGTAAAAGAT
45258529 AAA-TAAAA-AT
1 AAAGTAAAAGAT
*
45258539 AAAGTAAAAGAG
1 AAAGTAAAAGAT
45258551 AAAG
1 AAAG
45258555 GTCTATTTTC
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
10 4 0.10
11 10 0.24
12 12 0.29
13 10 0.24
14 6 0.14
ACGTcount: A:0.70, C:0.00, G:0.19, T:0.11
Consensus pattern (12 bp):
AAAGTAAAAGAT
Found at i:45262096 original size:12 final size:13
Alignment explanation
Indices: 45262079--45262112 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
45262069 ACTCAATAAA
45262079 TAAATAATATTT-
1 TAAATAATATTTC
45262091 TAAATAA-ATTTC
1 TAAATAATATTTC
45262103 TAAATAATAT
1 TAAATAATAT
45262113 AAAACTCCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 4 0.20
12 14 0.70
13 2 0.10
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAATAATATTTC
Found at i:45264809 original size:91 final size:90
Alignment explanation
Indices: 45264634--45264840 Score: 216
Period size: 91 Copynumber: 2.3 Consensus size: 90
45264624 GTTTATCTAC
* * ** *
45264634 AAACAATGATGATTTATCCACAAACTTACTAGTAGCTTTAATATGCAAACCTGTGGTGCATTTAC
1 AAACAATGATGATTTATCCACAAACTTACCAGAAAATTTAATATGCAAACCTGTGGTGCATTCAC
**
45264699 AACCTACTGACAACGTATTAATTTG
66 AACCTACTGACAACGTATTAACCTG
* * * * * * *
45264724 AAAACACTGATGATTTATCCACAAATTTACCGGAAAATTTTATCTGCAAACCTTTTGTGCATTCA
1 -AAACAATGATGATTTATCCACAAACTTACCAGAAAATTTAATATGCAAACCTGTGGTGCATTCA
* ** *
45264789 CAACCTATTGGTAACTTATTAACCTG
65 CAACCTACTGACAACGTATTAACCTG
* * *
45264815 AAACATTGGTGGTTTATCCACAAACT
1 AAACAATGATGATTTATCCACAAACT
45264841 AGAGTGCCTG
Statistics
Matches: 94, Mismatches: 22, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
90 22 0.23
91 72 0.77
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (90 bp):
AAACAATGATGATTTATCCACAAACTTACCAGAAAATTTAATATGCAAACCTGTGGTGCATTCAC
AACCTACTGACAACGTATTAACCTG
Found at i:45270952 original size:43 final size:43
Alignment explanation
Indices: 45270871--45270971 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
45270861 CACTACAATG
* * *
45270871 CATCATCCGATAAACCGAAGTAAATACATTAGATCACATAATA
1 CATCATCAGATAAACCAAAGTAAATACACTAGATCACATAATA
* * * *
45270914 CATCATCTGATAAACCAAAGTAAATATACTAG-TACACATAGTG
1 CATCATCAGATAAACCAAAGTAAATACACTAGAT-CACATAATA
*
45270957 TATCATCAGATAAAC
1 CATCATCAGATAAAC
45270972 TGAAACAATC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 1 0.02
43 48 0.98
ACGTcount: A:0.46, C:0.20, G:0.10, T:0.25
Consensus pattern (43 bp):
CATCATCAGATAAACCAAAGTAAATACACTAGATCACATAATA
Found at i:45271020 original size:43 final size:43
Alignment explanation
Indices: 45270939--45271031 Score: 123
Period size: 43 Copynumber: 2.2 Consensus size: 43
45270929 CAAAGTAAAT
* * * *
45270939 ATACTAGTACACATAGTGTATCATCAGATAAACTGAAACAATC
1 ATACTGGTACACATAATGTATCATCAGACAAACCGAAACAATC
* * *
45270982 ATACTGGTACACATAATGTATCATCAGGCAAGCCGAAACAATT
1 ATACTGGTACACATAATGTATCATCAGACAAACCGAAACAATC
45271025 ATACTGG
1 ATACTGG
45271032 CTCATAAGTG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (43 bp):
ATACTGGTACACATAATGTATCATCAGACAAACCGAAACAATC
Found at i:45272843 original size:47 final size:47
Alignment explanation
Indices: 45272676--45272897 Score: 202
Period size: 47 Copynumber: 4.7 Consensus size: 47
45272666 CACATTATGG
* * ** *
45272676 GAGCCAGTGTAAGACCCTGTCTGGGACATGGCATCGGTATCGAGACGA-
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT-GAGA-TAT
* * * * * **
45272724 GTGCTAGTGTAAGA-CATGTATGGGACAT-ACATC-AGCCTCGGGACGT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CAT-GAGATAT
* * * *
45272770 AAGCCAGTGTAAGA-CATGTCTGGGACATGGCATTGACGTGAGATAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATGAGATAT
*
45272816 GAGCTAGTGTAAAACCATGTCTGGGACATGGCATCGACATGAGATAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATGAGATAT
* *
45272863 GAGCTAGTGTAAGACCGTGTCTGGGACATAGCATC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
45272898 AGCACCTTAC
Statistics
Matches: 140, Mismatches: 29, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
46 48 0.34
47 79 0.56
48 13 0.09
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATGAGATAT
Found at i:45274195 original size:21 final size:21
Alignment explanation
Indices: 45274169--45274226 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
45274159 TGGGTGGAGG
45274169 ACACGGGCGTGTTGCCCTTTC-
1 ACACGGGCGTGTTGCCC-TTCA
*
45274190 ACACGGGTGTGTTGCCCTTCA
1 ACACGGGCGTGTTGCCCTTCA
*
45274211 ACACGTGCGTG-TGCCC
1 ACACGGGCGTGTTGCCC
45274227 CTATGTCAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.24
21 25 0.76
ACGTcount: A:0.12, C:0.33, G:0.29, T:0.26
Consensus pattern (21 bp):
ACACGGGCGTGTTGCCCTTCA
Found at i:45284332 original size:47 final size:46
Alignment explanation
Indices: 45284220--45284439 Score: 193
Period size: 47 Copynumber: 4.7 Consensus size: 46
45284210 ACATTAAGAG
* * * * * *
45284220 AGCTAGTGTAAGGCCCTGTCTGGGACATAGAATCGGCATCGAGACAGGT
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCA-CGAGA-TGAT
*
45284269 -GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGTCTACGAGATGAT
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-C-ACGAGATGAT
*
45284314 AG-TCAGTGTAAGACCATGTCTGGGACATGGCATCG-ACGTGA-GAT
1 AGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGCACGAGATGAT
* *
45284358 AGGAACTAGTGTAAGACCATGTCTGAGACATGGCATCGACATGAGAT-AT
1 A-G--CTAGTGTAAGACCATGTCTGGGACATGGCATCG-CACGAGATGAT
*
45284407 GAGCTAGTGTAAGACCGTGTCTGGGACATGGCA
1 -AGCTAGTGTAAGACCATGTCTGGGACATGGCA
45284440 CCGGTACCTT
Statistics
Matches: 144, Mismatches: 13, Indels: 30
0.77 0.07 0.16
Matches are distributed among these distances:
44 4 0.03
45 10 0.07
46 20 0.14
47 84 0.58
48 18 0.12
49 7 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCACGAGATGAT
Found at i:45284436 original size:94 final size:95
Alignment explanation
Indices: 45284219--45284439 Score: 254
Period size: 94 Copynumber: 2.3 Consensus size: 95
45284209 CACATTAAGA
* * * * * **
45284219 GAGCTAGTGTAAGGCCCTGTCTGGGACATAGAATCGGCATCGAGACAGGTGCTAGTGTAAGACAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGACAGGAACTAGTGTAAGACAT
* * *
45284284 GTTTGGGACATGCATCGTCTACGAGATGAT
66 GTCTGAGACATGCATCGACTACGAGATGAT
* *
45284314 -AG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACGT-GAGATAGGAACTAGTGTAAGACC
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGACAGGAACTAGTGTAAGA-C
*
45284376 ATGTCTGAGACATGGCATCGAC-ATGAGAT-AT
64 ATGTCTGAGACAT-GCATCGACTACGAGATGAT
*
45284407 GAGCTAGTGTAAGACCGTGTCTGGGACATGGCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCA
45284440 CCGGTACCTT
Statistics
Matches: 107, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
93 21 0.20
94 78 0.73
95 8 0.07
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (95 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGACAGGAACTAGTGTAAGACAT
GTCTGAGACATGCATCGACTACGAGATGAT
Found at i:45285551 original size:21 final size:21
Alignment explanation
Indices: 45285492--45285549 Score: 109
Period size: 21 Copynumber: 2.8 Consensus size: 21
45285482 CGGGTGGAGG
45285492 ACACGGGCGTGTTGCCCTTTC
1 ACACGGGCGTGTTGCCCTTTC
45285513 ACACGGGCGTGTTGCCCTTTC
1 ACACGGGCGTGTTGCCCTTTC
45285534 ACACGGGCGTG-TGCCC
1 ACACGGGCGTGTTGCCC
45285550 CTGTGTCAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 5 0.14
21 32 0.86
ACGTcount: A:0.10, C:0.34, G:0.31, T:0.24
Consensus pattern (21 bp):
ACACGGGCGTGTTGCCCTTTC
Found at i:45288933 original size:8 final size:8
Alignment explanation
Indices: 45288910--45288958 Score: 57
Period size: 9 Copynumber: 6.0 Consensus size: 8
45288900 TTAATATATT
45288910 TATTAAAC
1 TATTAAAC
45288918 TAATTAAAC
1 T-ATTAAAC
45288927 TATTAAACC
1 TATTAAA-C
45288936 TA--AAAC
1 TATTAAAC
45288942 TAATTAAAC
1 T-ATTAAAC
45288951 TATTAAAC
1 TATTAAAC
45288959 CTAAATTAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
6 2 0.06
7 4 0.11
8 14 0.39
9 16 0.44
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (8 bp):
TATTAAAC
Found at i:45288945 original size:24 final size:24
Alignment explanation
Indices: 45288914--45288963 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
45288904 TATATTTATT
45288914 AAACTAATTAAACTATTAAACCTA
1 AAACTAATTAAACTATTAAACCTA
45288938 AAACTAATTAAACTATTAAACCTA
1 AAACTAATTAAACTATTAAACCTA
45288962 AA
1 AA
45288964 TTAACCTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (24 bp):
AAACTAATTAAACTATTAAACCTA
Found at i:45294146 original size:17 final size:17
Alignment explanation
Indices: 45294124--45294162 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
45294114 CCTCACACGG
*
45294124 GTGAACCACACGGATGT
1 GTGAACCACACGGACGT
45294141 GTGAACCACACGGACGT
1 GTGAACCACACGGACGT
45294158 GTGAA
1 GTGAA
45294163 AATTAGTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (17 bp):
GTGAACCACACGGACGT
Found at i:45298143 original size:17 final size:17
Alignment explanation
Indices: 45298121--45298157 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
45298111 ATAAATGACG
*
45298121 TTTTTAAAATTAATAAC
1 TTTTTAAAATGAATAAC
*
45298138 TTTTTAATATGAATAAC
1 TTTTTAAAATGAATAAC
45298155 TTT
1 TTT
45298158 GTGACAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (17 bp):
TTTTTAAAATGAATAAC
Found at i:45312857 original size:13 final size:13
Alignment explanation
Indices: 45312839--45312866 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
45312829 GCTCGGCAGG
45312839 GACACGCCCGTGT
1 GACACGCCCGTGT
45312852 GACACGCCCGTGT
1 GACACGCCCGTGT
45312865 GA
1 GA
45312867 GTCGTGCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:45321034 original size:10 final size:10
Alignment explanation
Indices: 45321019--45321043 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
45321009 TATTTCATAC
45321019 AAATATTCAT
1 AAATATTCAT
45321029 AAATATTCAT
1 AAATATTCAT
45321039 AAATA
1 AAATA
45321044 CTACATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (10 bp):
AAATATTCAT
Found at i:45343759 original size:46 final size:44
Alignment explanation
Indices: 45343709--45343873 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 44
45343699 TGGTTGAGCA
45343709 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATGCGAA-G
* * * *
45343755 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCCT-TATG-GA-T-GCGAAG
45343801 TCCGAACTCGTTGAGTTGAGTCCGAGTT-CTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGCGAA-G
* *
45343845 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
45343874 ATTTAGGGGC
Statistics
Matches: 101, Mismatches: 10, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 29 0.29
45 2 0.02
46 60 0.59
47 1 0.01
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGCGAAG
Found at i:45343868 original size:90 final size:91
Alignment explanation
Indices: 45343706--45343873 Score: 293
Period size: 90 Copynumber: 1.8 Consensus size: 91
45343696 GGATGGTTGA
* *
45343706 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT-ACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45343771 TGAGTCCGAGTTCGTGAATGTAACTAG
65 TGAGTCCGAGTTCGTGAATGTAACTAG
*
45343798 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT-CTTATGGATGCGAACGCCCGAGCTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
45343862 GAGTCCGAGTTC
66 GAGTCCGAGTTC
45343874 ATTTAGGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
90 42 0.58
92 31 0.42
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (91 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAATGTAACTAG
Found at i:45344135 original size:19 final size:20
Alignment explanation
Indices: 45344098--45344135 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45344088 ATAAGGTGGT
45344098 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
45344118 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
45344136 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:45354579 original size:39 final size:39
Alignment explanation
Indices: 45354434--45354615 Score: 201
Period size: 39 Copynumber: 4.6 Consensus size: 39
45354424 TCGAATGATG
* * * *
45354434 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
45354474 TCC-GACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
45354513 TTCGGGCTAAG-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
45354551 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45354591 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
45354616 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 34 0.28
39 55 0.45
40 32 0.26
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45358504 original size:6 final size:6
Alignment explanation
Indices: 45358493--45358528 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
45358483 CACCCTCGTT
*
45358493 TACACA TACACA TACATA TACACA TACACA TACACA
1 TACACA TACACA TACACA TACACA TACACA TACACA
45358529 AATTTAGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (6 bp):
TACACA
Found at i:45370257 original size:79 final size:81
Alignment explanation
Indices: 45370155--45370339 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 81
45370145 GCTCCTCGTT
* *
45370155 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
45370218 GGAT-TTAGTAAC-TCGCA
64 GGATATT-GTAACTTAGCA
* **
45370235 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
45370299 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
45370315 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45370340 CATCATTCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
78 3 0.03
79 54 0.58
80 36 0.39
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:45370339 original size:40 final size:41
Alignment explanation
Indices: 45370155--45370339 Score: 240
Period size: 40 Copynumber: 4.6 Consensus size: 41
45370145 GCTCCTCGTT
* *
45370155 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
45370195 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
45370235 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * *
45370274 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAAC-TCGCA
45370315 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45370340 CATCATTCAA
Statistics
Matches: 128, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 79 0.62
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:45370929 original size:22 final size:21
Alignment explanation
Indices: 45370904--45370947 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
45370894 GTACCACATA
*
45370904 TAATGACA-TACATTTTACTAAC
1 TAATG-CATTACATATTA-TAAC
45370926 TAATGCATTACATATTATAAC
1 TAATGCATTACATATTATAAC
45370947 T
1 T
45370948 CAATATGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.39
Consensus pattern (21 bp):
TAATGCATTACATATTATAAC
Found at i:45379615 original size:18 final size:19
Alignment explanation
Indices: 45379588--45379623 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
45379578 TACCCAATAA
45379588 AAAAAGGAGAGAGAAGAAG
1 AAAAAGGAGAGAGAAGAAG
*
45379607 AAAAA-GAGAGAGGAGAA
1 AAAAAGGAGAGAGAAGAA
45379624 TTTGTGTGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (19 bp):
AAAAAGGAGAGAGAAGAAG
Found at i:45382649 original size:6 final size:6
Alignment explanation
Indices: 45382638--45382666 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
45382628 TTTAAAATCA
45382638 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
45382667 AAGAGTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:45386283 original size:25 final size:26
Alignment explanation
Indices: 45386252--45386329 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 26
45386242 ACAAATTTTT
45386252 AAAAAATTCATAGTTGGGTGAC-AAA
1 AAAAAATTCATAGTTGGGTGACAAAA
* * *
45386277 AAAAAATCCATAATTGGGTTACTAAAA
1 AAAAAATTCATAGTTGGGTGAC-AAAA
45386304 AAGAAAATGACTCATAGTTGGGTGAC
1 AA-AAAAT---TCATAGTTGGGTGAC
45386330 TTGTGATTAG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
25 19 0.46
27 5 0.12
28 5 0.12
31 12 0.29
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.24
Consensus pattern (26 bp):
AAAAAATTCATAGTTGGGTGACAAAA
Found at i:45390215 original size:63 final size:63
Alignment explanation
Indices: 45390147--45390267 Score: 172
Period size: 63 Copynumber: 1.9 Consensus size: 63
45390137 TTTTCCTTCG
* * * *
45390147 AAAAGAAAAAGGGAAAAGAAGAACAAAA-TATTTTTCTTTCTTTATCTACTTAGTTTTTCTTTA
1 AAAAGAAAAAGGAAAAAGAAGAA-AAAATTATTTTTCTCTCTCTATCCACTTAGTTTTTCTTTA
* *
45390210 AAAAGAAAAAGGAAAAAGAAGAAAAAATTGTTTTTCTCTCTCTATCCACTTGGTTTTT
1 AAAAGAAAAAGGAAAAAGAAGAAAAAATTATTTTTCTCTCTCTATCCACTTAGTTTTT
45390268 GTTTTATTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
62 4 0.08
63 47 0.92
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (63 bp):
AAAAGAAAAAGGAAAAAGAAGAAAAAATTATTTTTCTCTCTCTATCCACTTAGTTTTTCTTTA
Found at i:45391621 original size:46 final size:44
Alignment explanation
Indices: 45391571--45391659 Score: 108
Period size: 46 Copynumber: 2.0 Consensus size: 44
45391561 AGAAATAGAA
45391571 AAATGGAAAACA-TTCAGAAATAATTATGGTTTTCTCCAAAATGGAG
1 AAATGG-AAACATTTCAGAAATAA-TATGGTTTTCT-CAAAATGGAG
* * * *
45391617 AAATGGAATCATTTGAGAATTAATGTGGTTTTCTCAAAATGGA
1 AAATGGAAACATTTCAGAAATAATATGGTTTTCTCAAAATGGA
45391660 AATTGAAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 9 0.24
45 14 0.37
46 15 0.39
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.31
Consensus pattern (44 bp):
AAATGGAAACATTTCAGAAATAATATGGTTTTCTCAAAATGGAG
Found at i:45392773 original size:16 final size:16
Alignment explanation
Indices: 45392754--45392785 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45392744 AATAAATAAT
*
45392754 TAATATAATATTTTTA
1 TAATATAATATATTTA
45392770 TAATATAATATATTTA
1 TAATATAATATATTTA
45392786 GGTCAAGCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TAATATAATATATTTA
Found at i:45399213 original size:41 final size:41
Alignment explanation
Indices: 45399014--45399217 Score: 232
Period size: 41 Copynumber: 5.0 Consensus size: 41
45399004 GTAAAACATA
* * * * * *
45399014 GAGCAATAGCGGCGTTTTTGTTAACACGCCACTAAAA-ACA
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* * * * * *
45399054 GAGCAATAACGGCGTTTTTTTGTTAAAATGCCGCTAAAA-ACA
1 GAGCAATAGCGGCG--CTTTTGGTAAAACGCCGCTAAAAGTCG
*
45399096 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCT
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
*
45399137 GAGCAATAGCGGCGCTTTTGGTAAAACGCCACTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
**
45399178 GAGCAATAGCGGCGCTTTTGGTAAAACGTTGCTAAAAGTC
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTC
45399218 ATATAACCCC
Statistics
Matches: 146, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
40 33 0.23
41 77 0.53
42 36 0.25
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (41 bp):
GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
Found at i:45399424 original size:26 final size:26
Alignment explanation
Indices: 45399395--45399473 Score: 60
Period size: 26 Copynumber: 3.2 Consensus size: 26
45399385 ATTAATGTAA
45399395 AAGCTTATGTTCATAATAAATTATGG
1 AAGCTTATGTTCATAATAAATTATGG
* * * *
45399421 AAGC--A-ATACTTAAT--ATTGATTG
1 AAGCTTATGTTCATAATAAATT-ATGG
*
45399443 ATAGCTTGTGTTCATAATAAATTATGG
1 A-AGCTTATGTTCATAATAAATTATGG
45399470 AAGC
1 AAGC
45399474 AATACTATAT
Statistics
Matches: 37, Mismatches: 9, Indels: 14
0.62 0.15 0.23
Matches are distributed among these distances:
21 3 0.08
22 4 0.11
23 9 0.24
24 1 0.03
26 13 0.35
27 4 0.11
28 3 0.08
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (26 bp):
AAGCTTATGTTCATAATAAATTATGG
Found at i:45407543 original size:15 final size:15
Alignment explanation
Indices: 45407523--45407579 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
45407513 CGATGAATTT
45407523 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
45407538 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
45407553 ATTGAATTTATATTG
1 ATTGAATTTATATTG
45407568 ATTGAA-TTATAT
1 ATTGAATTTATAT
45407580 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:45407988 original size:23 final size:23
Alignment explanation
Indices: 45407962--45408021 Score: 92
Period size: 21 Copynumber: 2.8 Consensus size: 23
45407952 AGGAACTTTA
45407962 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
45407985 TGTGTCGTA--TCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
45408006 TGTGTCGT-TTT-AGGCA
1 TGTGTCGTATTTCAGGCA
45408022 TTTTATGTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
21 25 0.71
22 1 0.03
23 9 0.26
ACGTcount: A:0.13, C:0.23, G:0.28, T:0.35
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:45411260 original size:26 final size:26
Alignment explanation
Indices: 45411231--45411312 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
45411221 TTAGGTTACG
45411231 CGTGTAGTACTAAGTGCAGGCTACTA
1 CGTGTAGTACTAAGTGCAGGCTACTA
* * * *
45411257 CGTGTACTA-GATAGT-TAGG-T-CGCA
1 CGTGTAGTACTA-AGTGCAGGCTAC-TA
* *
45411281 TGTGTAGTACTGAGTGCAGGCTACTA
1 CGTGTAGTACTAAGTGCAGGCTACTA
45411307 CGTGTA
1 CGTGTA
45411313 TCAGATGGTT
Statistics
Matches: 39, Mismatches: 11, Indels: 12
0.63 0.18 0.19
Matches are distributed among these distances:
23 1 0.03
24 12 0.31
25 7 0.18
26 18 0.46
27 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CGTGTAGTACTAAGTGCAGGCTACTA
Found at i:45411297 original size:50 final size:49
Alignment explanation
Indices: 45411177--45411342 Score: 185
Period size: 50 Copynumber: 3.3 Consensus size: 49
45411167 TGTGAGAACA
* *
45411177 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTTACG
1 CATGTGTAGTACTA-GTGCAGGCTACTACGTGTATAAGATGG--TTAGG-T-CG
*
45411231 C--GTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAGTTAGGTCG
1 CATGTGTAGTACT-AGTGCAGGCTACTACGTGTA-TAAGATGGTTAGGTCG
* *
45411279 CATGTGTAGTACTGAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
1 CATGTGTAGTACT-AGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCG
*
45411329 CGTGTGTAGTACTA
1 CATGTGTAGTACTA
45411343 AGTAGATAGT
Statistics
Matches: 100, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
48 3 0.03
49 3 0.03
50 59 0.59
52 32 0.32
53 2 0.02
54 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.33
Consensus pattern (49 bp):
CATGTGTAGTACTAGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCG
Found at i:45411358 original size:31 final size:31
Alignment explanation
Indices: 45411315--45411376 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
45411305 TACGTGTATC
* *
45411315 AGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 AGATAGTTAGGTCACATGTGTAGTACTAAGT
*
45411346 AGATAGTTAGGTCGCATGTGTAGTACTAAGT
1 AGATAGTTAGGTCACATGTGTAGTACTAAGT
45411377 GCAGGCTACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.10, G:0.31, T:0.32
Consensus pattern (31 bp):
AGATAGTTAGGTCACATGTGTAGTACTAAGT
Found at i:45411459 original size:132 final size:131
Alignment explanation
Indices: 45411232--45411477 Score: 359
Period size: 132 Copynumber: 1.9 Consensus size: 131
45411222 TAGGTTACGC
* * * * * *
45411232 GTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTCGCATGTGTAGTACTGAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATACTTAGATCACATGTGTAGTACTAAGTG
*
45411297 CAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTAGATAGTTAGGTCGCA
66 CAGGCTACTACGTGTATCAGATGGTAAGGTCACGTGTGTAGTACTAAGTAGATAGTTAGGTCGCA
45411362 T
131 T
* * * *
45411363 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCA-ATCACGTGTGTCGTACTAAG
1 GTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT-ACTT-AGATCACATGTGTAGTACTAAG
*
45411427 TGCAGGCTACTACGTGTATCAGATGGTAAGGTCATGTGTGTAGTACTAAGT
64 TGCAGGCTACTACGTGTATCAGATGGTAAGGTCACGTGTGTAGTACTAAGT
45411478 GTAGGCTACT
Statistics
Matches: 101, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
131 33 0.33
132 67 0.66
133 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (131 bp):
GTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATACTTAGATCACATGTGTAGTACTAAGTG
CAGGCTACTACGTGTATCAGATGGTAAGGTCACGTGTGTAGTACTAAGTAGATAGTTAGGTCGCA
T
Found at i:45411533 original size:49 final size:50
Alignment explanation
Indices: 45411354--45411537 Score: 149
Period size: 50 Copynumber: 3.7 Consensus size: 50
45411344 GTAGATAGTT
* *** * **
45411354 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAT--GGT-A
* * * *
45411407 A--TCACGTGTGTCGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTA
** * * *
45411455 AGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCGGATTGT-
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTA
* * *
45411504 TGGTCGCATGTGTAGTGCTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
45411538 TGCGTACCAG
Statistics
Matches: 107, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
48 2 0.02
49 29 0.27
50 39 0.36
51 36 0.34
53 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTA
Found at i:45411770 original size:16 final size:15
Alignment explanation
Indices: 45411749--45411778 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
45411739 GAATGGAGTA
45411749 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
45411765 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
45411779 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:45416998 original size:26 final size:26
Alignment explanation
Indices: 45416969--45417050 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
45416959 TGATACAAAT
45416969 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
45416995 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
45417021 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
45417047 TGAT
1 TGAT
45417051 TGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:45421323 original size:18 final size:18
Alignment explanation
Indices: 45421295--45421385 Score: 83
Period size: 18 Copynumber: 5.0 Consensus size: 18
45421285 AATCAGAACG
*
45421295 ATTATTTATTCAGTAACA
1 ATTAATTATTCAGTAACA
* * *
45421313 GTTAGTTATTCGGTAACA
1 ATTAATTATTCAGTAACA
* * *
45421331 ATCAATTATTCAATAATA
1 ATTAATTATTCAGTAACA
* * *
45421349 ATCAGTTATTCTGTAACA
1 ATTAATTATTCAGTAACA
45421367 ATTAAATTATTCAGTAACA
1 ATT-AATTATTCAGTAACA
45421386 GTTGATCTTT
Statistics
Matches: 56, Mismatches: 16, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
18 43 0.77
19 13 0.23
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.40
Consensus pattern (18 bp):
ATTAATTATTCAGTAACA
Found at i:45421341 original size:36 final size:37
Alignment explanation
Indices: 45421300--45421388 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 37
45421290 GAACGATTAT
*
45421300 TTATTCAGTAACAGTTAGTTATTCGGTAACAA-TCAA
1 TTATTCAGTAACAGTTAGTTATTCGGTAACAATTAAA
* * * * *
45421336 TTATTCAATAATAATCAGTTATTCTGTAACAATTAAA
1 TTATTCAGTAACAGTTAGTTATTCGGTAACAATTAAA
45421373 TTATTCAGTAACAGTT
1 TTATTCAGTAACAGTT
45421389 GATCTTTCCA
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
36 27 0.64
37 15 0.36
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (37 bp):
TTATTCAGTAACAGTTAGTTATTCGGTAACAATTAAA
Found at i:45421582 original size:47 final size:47
Alignment explanation
Indices: 45421513--45421619 Score: 160
Period size: 47 Copynumber: 2.3 Consensus size: 47
45421503 CAGTAACAGT
* * * * *
45421513 AACAGTAGCAATACGGTACACAGAGTACCTCATTGGAACAAATCCGG
1 AACAGTAACAGTACGGTACACAGAGTACCTAATCGGAACAAATCCGA
*
45421560 AACAGTAACAGTACGGTACACAGAGTACCTAATCGGAACAAATTCGA
1 AACAGTAACAGTACGGTACACAGAGTACCTAATCGGAACAAATCCGA
45421607 AACAGTAACAGTA
1 AACAGTAACAGTA
45421620 ACGATAACAG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.42, C:0.21, G:0.20, T:0.17
Consensus pattern (47 bp):
AACAGTAACAGTACGGTACACAGAGTACCTAATCGGAACAAATCCGA
Found at i:45421673 original size:6 final size:6
Alignment explanation
Indices: 45421662--45421688 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
45421652 TGCCGAATTG
45421662 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
45421689 GTCGGCACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:45423524 original size:16 final size:16
Alignment explanation
Indices: 45423503--45423555 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
45423493 ATTTATTTCA
45423503 TAATA-TAATATAATAT
1 TAATATTAAT-TAATAT
45423519 TAATATTAATTAATAAT
1 TAATATTAATTAAT-AT
*
45423536 T-ATAGTAA-TAAT-T
1 TAATATTAATTAATAT
45423549 TAATATT
1 TAATATT
45423556 TAAATAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
13 2 0.06
14 4 0.12
15 4 0.12
16 15 0.47
17 7 0.22
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
TAATATTAATTAATAT
Found at i:45430276 original size:11 final size:11
Alignment explanation
Indices: 45430243--45430285 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
45430233 GGGTGAAAAT
45430243 AATTATATAATA
1 AATTATATAA-A
* *
45430255 AATTTTTTAAA
1 AATTATATAAA
45430266 AATTATATAAA
1 AATTATATAAA
*
45430277 AGTTATATA
1 AATTATATA
45430286 TGTATAGTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (11 bp):
AATTATATAAA
Found at i:45431465 original size:48 final size:46
Alignment explanation
Indices: 45431384--45431479 Score: 147
Period size: 48 Copynumber: 2.0 Consensus size: 46
45431374 ACGAACAAAT
* * *
45431384 ATTCATCTAATTTGTTGAATCTCTCTATTACATTGCTCCTTATGAG
1 ATTCATCTAATTTGATAAATCTCTCTATTACATTGCTCCGTATGAG
45431430 ATTCATCTAATTATTGATAAATCTCTCTATTACATTGCTCCGTATGAG
1 ATTCATCTAA-T-TTGATAAATCTCTCTATTACATTGCTCCGTATGAG
45431478 AT
1 AT
45431480 GCTTCATAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 10 0.22
47 1 0.02
48 34 0.76
ACGTcount: A:0.27, C:0.19, G:0.10, T:0.44
Consensus pattern (46 bp):
ATTCATCTAATTTGATAAATCTCTCTATTACATTGCTCCGTATGAG
Found at i:45432320 original size:27 final size:26
Alignment explanation
Indices: 45432290--45432348 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
45432280 CTTATATACA
*
45432290 ATAAAAGTT-TTAAAATATTTTATTTTT
1 ATAAAA-TTATTAAAA-ATTTAATTTTT
*
45432317 ATAAAATTATTAAAAATTTAA-TTTA
1 ATAAAATTATTAAAAATTTAATTTTT
45432342 ATAAAAT
1 ATAAAAT
45432349 CATATATATC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 10 0.34
26 7 0.24
27 12 0.41
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
ATAAAATTATTAAAAATTTAATTTTT
Found at i:45432345 original size:25 final size:26
Alignment explanation
Indices: 45432289--45432348 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
45432279 ACTTATATAC
*
45432289 AATAAAAGTTTTAAAATATTTTATTTT
1 AATAAAA-TTTTAAAATATTTTAATTT
*
45432316 TATAAAATTATTAAAA-A-TTTAATTT
1 AATAAAATT-TTAAAATATTTTAATTT
45432341 AATAAAAT
1 AATAAAAT
45432349 CATATATATC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 14 0.48
26 3 0.10
27 12 0.41
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
AATAAAATTTTAAAATATTTTAATTT
Found at i:45438580 original size:22 final size:22
Alignment explanation
Indices: 45438536--45438580 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
45438526 TTAATCATTA
* * **
45438536 TTATTTAGTATCAGTCATTTAT
1 TTATTCAGTAACAGTCAAATAT
45438558 TTATTCAGTAACAGTCAAATAT
1 TTATTCAGTAACAGTCAAATAT
45438580 T
1 T
45438581 CGGTAGCAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47
Consensus pattern (22 bp):
TTATTCAGTAACAGTCAAATAT
Found at i:45450358 original size:43 final size:43
Alignment explanation
Indices: 45450297--45450448 Score: 191
Period size: 43 Copynumber: 3.5 Consensus size: 43
45450287 ATAGGATTCT
45450297 GATATGAGATTTCATGTAAGACCACATCTGGGACGTTGGCATC
1 GATATGAGATTTCATGTAAGACCACATCTGGGACGTTGGCATC
*
45450340 GATATGAGATTTCATGTAAGATCACATCTGGGACGTTGGCATC
1 GATATGAGATTTCATGTAAGACCACATCTGGGACGTTGGCATC
* * * ** * **
45450383 GATTTGAAATTTACGTGTAAGACCATGTCTGGGACATCAGCATC
1 GATATGAGATTT-CATGTAAGACCACATCTGGGACGTTGGCATC
45450427 G-TAT-ATGATTTCATGTAAGACC
1 GATATGA-GATTTCATGTAAGACC
45450449 CTGTCTAGGA
Statistics
Matches: 94, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
42 11 0.12
43 58 0.62
44 25 0.27
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (43 bp):
GATATGAGATTTCATGTAAGACCACATCTGGGACGTTGGCATC
Found at i:45450490 original size:43 final size:42
Alignment explanation
Indices: 45450393--45450490 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 42
45450383 GATTTGAAAT
* *
45450393 TTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATATGA
1 TTACATGTAAGACCATGTCTAGGACATCAGCATCGTATATGA
* * *
45450435 TTTCATGTAAGACCCTGTCTAGGACAAT-GGCATC-TATATTTGA
1 TTACATGTAAGACCATGTCTAGGAC-ATCAGCATCGTATA--TGA
45450478 TTACATGTAAGAC
1 TTACATGTAAGAC
45450491 TAGGTCAGGG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
41 4 0.09
42 26 0.55
43 17 0.36
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTAGGACATCAGCATCGTATATGA
Found at i:45464177 original size:15 final size:15
Alignment explanation
Indices: 45464159--45464198 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
45464149 ACCATTCTCA
45464159 CTCATATGCCCTAGG
1 CTCATATGCCCTAGG
45464174 CTCATATGCCCTAGG
1 CTCATATGCCCTAGG
45464189 CGT-ATATGCC
1 C-TCATATGCC
45464199 AAAGTTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 23 0.96
16 1 0.04
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.28
Consensus pattern (15 bp):
CTCATATGCCCTAGG
Found at i:45465566 original size:5 final size:5
Alignment explanation
Indices: 45465556--45465583 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
45465546 CAATTTGAGA
45465556 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
45465584 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:45470672 original size:32 final size:32
Alignment explanation
Indices: 45470635--45470711 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
45470625 ATGCATGTGT
* * **
45470635 GTAACTTTTCATCTTCAAGTCTCTTTGCATTA
1 GTAACTTTTCATATTCAAGCCTCTTCACATTA
* * *
45470667 TTAACTCTTCATATTCAAGCCTCTTCACATTC
1 GTAACTTTTCATATTCAAGCCTCTTCACATTA
45470699 GTAACTTTTCATA
1 GTAACTTTTCATA
45470712 ATTTATTTTG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (32 bp):
GTAACTTTTCATATTCAAGCCTCTTCACATTA
Found at i:45475173 original size:32 final size:32
Alignment explanation
Indices: 45475136--45475212 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
45475126 ATGCATGTGT
* * **
45475136 GTAACTTTTCATCTTCAAGTCTCTTTGCATTA
1 GTAACTTTTCATATTCAAGCCTCTTCACATTA
* * *
45475168 TTAACTCTTCATATTCAAGCCTCTTCACATTC
1 GTAACTTTTCATATTCAAGCCTCTTCACATTA
45475200 GTAACTTTTCATA
1 GTAACTTTTCATA
45475213 ATTTATTTTG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (32 bp):
GTAACTTTTCATATTCAAGCCTCTTCACATTA
Found at i:45476911 original size:49 final size:47
Alignment explanation
Indices: 45476596--45477251 Score: 1089
Period size: 47 Copynumber: 13.7 Consensus size: 47
45476586 CCCTTCGGGA
* * * * * *
45476596 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45476643 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45476690 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45476737 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45476784 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45476831 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45476878 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45476927 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45476976 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45477023 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45477072 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45477121 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45477170 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45477217 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
45477252 AGAATCCTAA
Statistics
Matches: 587, Mismatches: 17, Indels: 10
0.96 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 345 0.59
49 241 0.41
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45477008 original size:145 final size:145
Alignment explanation
Indices: 45476596--45477230 Score: 1092
Period size: 145 Copynumber: 4.4 Consensus size: 145
45476586 CCCTTCGGGA
* * * * * * *
45476596 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
45476657 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
45476722 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
45476737 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
45476798 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
45476863 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
45476878 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
45476943 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
45477008 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
45477023 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
45477088 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCAT
45477153 CACATCGGCCATTAGGC
129 CACATCGGCCATTAGGC
*
45477170 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
45477231 GCATGTTCAC
Statistics
Matches: 477, Mismatches: 9, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
140 1 0.00
141 139 0.29
143 47 0.10
145 243 0.51
147 47 0.10
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (145 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:45481573 original size:22 final size:22
Alignment explanation
Indices: 45481543--45481597 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
45481533 AAATATACAT
45481543 AAAAA-TCATTCAAAACTTCAA
1 AAAAATTCATTCAAAACTTCAA
* * * *
45481564 AAATATTCATACAAAATTTTAA
1 AAAAATTCATTCAAAACTTCAA
45481586 AAAAATT-ATTCA
1 AAAAATTCATTCA
45481598 CATCAAAAAC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAAATTCATTCAAAACTTCAA
Found at i:45482928 original size:12 final size:12
Alignment explanation
Indices: 45482893--45482928 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
45482883 GCTAATACTA
*
45482893 CTTTCTTTTTTT
1 CTTTTTTTTTTT
*
45482905 CTTTTTCTTTTT
1 CTTTTTTTTTTT
45482917 CTTTTTTTTTTT
1 CTTTTTTTTTTT
45482929 GAAATAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
CTTTTTTTTTTT
Found at i:45483043 original size:11 final size:12
Alignment explanation
Indices: 45483015--45483045 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
45483005 ACTAAACACT
45483015 AAACAAAACCCA
1 AAACAAAACCCA
45483027 AAACAAAACCC-
1 AAACAAAACCCA
45483038 AAACAAAA
1 AAACAAAA
45483046 TTAAAACACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (12 bp):
AAACAAAACCCA
Found at i:45486545 original size:21 final size:20
Alignment explanation
Indices: 45486515--45486554 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
45486505 AAAAACTTGT
45486515 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
45486535 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
45486555 AACATACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:45498972 original size:33 final size:33
Alignment explanation
Indices: 45498935--45499047 Score: 124
Period size: 33 Copynumber: 3.5 Consensus size: 33
45498925 TGTATACGTG
*
45498935 TAAGACCATAGCTGGGCTATGGCATCCTGATGA
1 TAAGACCATAACTGGGCTATGGCATCCTGATGA
* * *
45498968 TAAGACCATAACTGGGTTATGACATTAC-GAGTG-
1 TAAGACCATAACTGGGCTATGGCA-TCCTGA-TGA
** *
45499001 TAAGACCATAGTTGGGCTACGGCATCCT-ATGA
1 TAAGACCATAACTGGGCTATGGCATCCTGATGA
45499033 TAAGACCATAACTGG
1 TAAGACCATAACTGG
45499048 ATTATGACAT
Statistics
Matches: 64, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
31 2 0.03
32 16 0.25
33 42 0.66
34 4 0.06
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (33 bp):
TAAGACCATAACTGGGCTATGGCATCCTGATGA
Found at i:45499058 original size:65 final size:66
Alignment explanation
Indices: 45498932--45499074 Score: 243
Period size: 65 Copynumber: 2.2 Consensus size: 66
45498922 ATATGTATAC
* * *
45498932 GTGTAAGACCATAGCTGGGCTATGGCATCCTGATGATAAGACCATAACTGGGTTATGACATTACG
1 GTGTAAGACCATAGCTGGGCTACGGCATCCTGATGATAAGACCATAACTGGATTATGACATTACA
45498997 A
66 A
*
45498998 GTGTAAGACCATAGTTGGGCTACGGCATCCT-ATGATAAGACCATAACTGGATTATGACATTACA
1 GTGTAAGACCATAGCTGGGCTACGGCATCCTGATGATAAGACCATAACTGGATTATGACATTACA
45499062 A
66 A
45499063 GTGTAAGACCAT
1 GTGTAAGACCAT
45499075 GGCAAGGCCA
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
65 44 0.60
66 29 0.40
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (66 bp):
GTGTAAGACCATAGCTGGGCTACGGCATCCTGATGATAAGACCATAACTGGATTATGACATTACA
A
Found at i:45502525 original size:46 final size:46
Alignment explanation
Indices: 45502473--45502593 Score: 233
Period size: 46 Copynumber: 2.6 Consensus size: 46
45502463 ATCTCGAGGC
*
45502473 CGATGCATGTCCCAAACATGTCTTACATTAGTTCTCGTCTTAATGT
1 CGATGCATGTCCCAAACATGTCTTACACTAGTTCTCGTCTTAATGT
45502519 CGATGCATGTCCCAAACATGTCTTACACTAGTTCTCGTCTTAATGT
1 CGATGCATGTCCCAAACATGTCTTACACTAGTTCTCGTCTTAATGT
45502565 CGATGCATGTCCCAAACATGTCTTACACT
1 CGATGCATGTCCCAAACATGTCTTACACT
45502594 GGCTGGTATA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (46 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGTTCTCGTCTTAATGT
Found at i:45502674 original size:46 final size:48
Alignment explanation
Indices: 45502566--45502687 Score: 160
Period size: 46 Copynumber: 2.6 Consensus size: 48
45502556 TCTTAATGTC
* * *
45502566 GATGCATGTCCCAAACATGTCTTACACTGGCTGGTATATCTTGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTGCTATATCATGAGGCT
* *
45502614 GATGCATGTCCCAGACATATCTTACACTGGCT-CTCA-AT-ATGTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTGCT-ATATCATGAGGCT
*
45502660 GATGCATCTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
45502688 AGTACACATA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 32 0.48
47 3 0.05
48 31 0.47
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTGCTATATCATGAGGCT
Found at i:45504142 original size:15 final size:15
Alignment explanation
Indices: 45504122--45504151 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45504112 AGTTTTATTC
45504122 AATTAGCTATTAACT
1 AATTAGCTATTAACT
*
45504137 AATTAGTTATTAACT
1 AATTAGCTATTAACT
45504152 TTCGGCCTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (15 bp):
AATTAGCTATTAACT
Found at i:45505933 original size:40 final size:40
Alignment explanation
Indices: 45505850--45506112 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
45505840 TTGAATGCTG
* * * * * *
45505850 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
45505890 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
45505930 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
45505970 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
45506010 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
45506050 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
45506089 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
45506113 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:45506132 original size:79 final size:80
Alignment explanation
Indices: 45505889--45506147 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
45505879 AAGTGAATAT
* * * * * * *
45505889 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
45505953 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
45505969 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
45506034 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
45506049 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
45506113 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
45506128 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
45506148 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:45513875 original size:40 final size:40
Alignment explanation
Indices: 45513792--45514054 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
45513782 TTGAATGCTG
* * * * * *
45513792 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
45513832 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
45513872 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
45513912 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
45513952 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
45513992 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
45514031 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
45514055 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:45514074 original size:79 final size:80
Alignment explanation
Indices: 45513831--45514089 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
45513821 AAGTGAATAT
* * * * * * *
45513831 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
45513895 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
45513911 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
45513976 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
45513991 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
45514055 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
45514070 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
45514090 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:45517586 original size:28 final size:28
Alignment explanation
Indices: 45517551--45517639 Score: 160
Period size: 28 Copynumber: 3.1 Consensus size: 28
45517541 TGGTACATAT
45517551 ATCACCATTCACTTATAAAAAATTATAC
1 ATCACCATTCACTTATAAAAAATTATAC
*
45517579 ATCACCATTCAATTATAAAAAATTATAC
1 ATCACCATTCACTTATAAAAAATTATAC
45517607 ATCACCATTCACTTATAAAAAATTATAC
1 ATCACCATTCACTTATAAAAAATTATAC
45517635 TATCA
1 -ATCA
45517640 TTTCTATTCC
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
28 54 0.93
29 4 0.07
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (28 bp):
ATCACCATTCACTTATAAAAAATTATAC
Found at i:45520569 original size:53 final size:53
Alignment explanation
Indices: 45520501--45520604 Score: 145
Period size: 53 Copynumber: 2.0 Consensus size: 53
45520491 TTCCTTTTTC
* * * * *
45520501 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAAG
1 AACTCACCATTGCCATGCCTTGACAAGGTCTTACATGGGATCCTTGCCTTAAG
* *
45520554 AACTCACCATTGCCATGCCTTGGCAAGGTCTTACATGGGATCTTTGCCTTA
1 AACTCACCATTGCCATGCCTTGACAAGGTCTTACATGGGATCCTTGCCTTA
45520605 TCGTAGTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACAAGGTCTTACATGGGATCCTTGCCTTAAG
Found at i:45526468 original size:104 final size:103
Alignment explanation
Indices: 45526288--45526552 Score: 449
Period size: 104 Copynumber: 2.6 Consensus size: 103
45526278 AACCGTTATT
* * *
45526288 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
45526353 ATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGACAC
66 ATCAGCACATAGCAACCCCC-TTTTCATTTCAAAGACAC
*
45526392 GGTGGATATCGCACTTAGCATCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
*
45526457 ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGACAC
* *
45526495 GGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACATAGAAACCCC
1 GGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCC
45526553 CTTTCACATT
Statistics
Matches: 152, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
103 45 0.30
104 107 0.70
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (103 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGACAC
Found at i:45526555 original size:77 final size:77
Alignment explanation
Indices: 45526452--45526629 Score: 279
Period size: 77 Copynumber: 2.3 Consensus size: 77
45526442 CAACCCCTCG
* *
45526452 GGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAAGATACGGTGGAT-ATCGCACTTAGCA
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACGGTGGATCA-CGCACATAGCA
45526515 CCACCAATGAAATC
65 CCACCAATG-AATC
* *
45526529 GGGGAATCAGCACATAGAAACCCCCTTTCACATTTCAAAGATATGGTGGATCACGCACATAGCAC
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACGGTGGATCACGCACATAGCAC
45526594 CACCAATGAATC
66 CACCAATGAATC
*
45526606 GGGGAATCAGCACACAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
45526630 TTTATATACA
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
77 53 0.57
78 39 0.42
79 1 0.01
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.19
Consensus pattern (77 bp):
GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACGGTGGATCACGCACATAGCAC
CACCAATGAATC
Done.