Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 142 of 253
Found at i:45526997 original size:30 final size:30
Alignment explanation
Indices: 45526963--45527020 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
45526953 CCACCCAACT
45526963 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
45526993 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
45527021 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:45534023 original size:102 final size:104
Alignment explanation
Indices: 45533847--45534109 Score: 433
Period size: 102 Copynumber: 2.5 Consensus size: 104
45533837 AACCGTTATT
* * * *
45533847 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
**
45533912 ATCAGCACATAGCAACCCCCTTT-TTATTTC-AAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
45533949 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
45534014 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
*
45534053 GGTGGATATCGCAC-TAGCACCACCAATGAAATCGGGGAATCAGCACATAGCAACCCC
1 GGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCC
45534110 ACATTTCAAA
Statistics
Matches: 151, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
102 84 0.56
103 19 0.13
104 48 0.32
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:45534129 original size:72 final size:75
Alignment explanation
Indices: 45534009--45534149 Score: 209
Period size: 72 Copynumber: 1.9 Consensus size: 75
45533999 CAACCCCTCG
45534009 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACGGTGGAT-ATCGCAC-TAGCA
1 GGGGAATCAGCACATAGCAA-CCCC--TCACATTTCAAAGATACGGTGGATCA-CGCACATAGCA
45534072 CCACCAATGAAATC
62 CCACCAATGAAATC
*
45534086 GGGGAATCAGCACATAGCAA-CCC-CACATTTCAAAGATATGGTGGATCACGCACATAGCACCAC
1 GGGGAATCAGCACATAGCAACCCCTCACATTTCAAAGATACGGTGGATCACGCACATAGCACCAC
45534149 C
66 C
45534150 TTCAGCACAC
Statistics
Matches: 61, Mismatches: 1, Indels: 8
0.87 0.01 0.11
Matches are distributed among these distances:
72 27 0.44
73 11 0.18
75 3 0.05
77 20 0.33
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.18
Consensus pattern (75 bp):
GGGGAATCAGCACATAGCAACCCCTCACATTTCAAAGATACGGTGGATCACGCACATAGCACCAC
CAATGAAATC
Found at i:45534526 original size:30 final size:29
Alignment explanation
Indices: 45534492--45534556 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
45534482 TAATCCACCA
45534492 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
45534522 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
45534552 CCCAA
1 CCCAA
45534557 GCTCAGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:45534530 original size:31 final size:30
Alignment explanation
Indices: 45534499--45534556 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
45534489 CCACCCAACT
45534499 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
45534529 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
45534557 GCTCAGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:45537109 original size:53 final size:54
Alignment explanation
Indices: 45537041--45537247 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
45537031 TTCCTTTTTA
* * *
45537041 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * ** * * *
45537094 AACTCACCATTGCCATGCCTTGGTATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * * *
45537148 TAGTTTATCAATGCCATGTCTTAACATGGTCTTACATGATTTCCTTACCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
45537203 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
45537248 AAACCCTGAT
Statistics
Matches: 119, Mismatches: 33, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 45 0.38
54 37 0.31
55 37 0.31
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:45539598 original size:16 final size:16
Alignment explanation
Indices: 45539577--45539610 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
45539567 CACGTGAATT
45539577 ACGTATGAATGCACTA
1 ACGTATGAATGCACTA
45539593 ACGTATGAATGCACTA
1 ACGTATGAATGCACTA
45539609 AC
1 AC
45539611 ACGTGTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (16 bp):
ACGTATGAATGCACTA
Found at i:45541719 original size:291 final size:291
Alignment explanation
Indices: 45541255--45542314 Score: 953
Period size: 283 Copynumber: 3.6 Consensus size: 291
45541245 TGTATGAAAA
* * * * * * *
45541255 AAAATGAAGTTTTGGTTGAGTGGTAAATTTAATATTTTACTACTCCAATTGACAT-AGGTTTATA
1 AAAATAAAGCTTTGGTTGAGTGATAAATTTAAGATTTTACTAATCCAATTGGCATGA-GTTCA-A
* * * * * *
45541319 TACCACCATATTCATATTTTTCTTTGATTTTTGTTAAAATAAATAGACTAAAACACCATTGAATA
64 TCCCACCACATGCATATTTTTC-TTG-TTTTTGTTAAAATAAAAAGACTAAAATACCTTTGAATA
* ** *
45541384 GTATTACTTATTTTAATTATGGAAGGACA-TTTCTATACTTTCCTAACCGAGTTGGTACCCAGTT
127 ATAAGACTTATTTTAATTATGGAAGGACATTTTC-ATAATTTCCTAACCGAGTTGGTACCCAGTT
*
45541448 AAACTATGACACC-ACTCAACCAGGGGTTTTATTAATAGTATAAAAATATAACTGGTGAAGATAA
191 AAACTATGACACCAACTCAATCAGGGGTTTTATTAATAGTATAAAAATATAACTGGTGAAGATAA
*
45541512 TAAATTGTGAATATTTAAAAAATTGTATAAAA-AAATC
256 TAAATTGTG-ATATTTAAAAAA-TGTATAAAATATATC
* * * *
45541549 AAAATAAAGCTTTGATTGAGTTG-TAAATTTAAGGTTTTACTAATCCAATTGGCACGAGTTTAAC
1 AAAATAAAGCTTTGGTTGAG-TGATAAATTTAAGATTTTACTAATCCAATTGGCATGAGTTCAA-
* *
45541613 TCCCACCACATGCATATTTTTCTTGTTTTT-TCT-AAATAAAAAGACTAAAGTGCCTTTGAATAA
64 TCCCACCACATGCATATTTTTCTTGTTTTTGT-TAAAATAAAAAGACTAAAATACCTTTGAATAA
* * *
45541676 TAAGATTTATTTTTATTATGGAAGGACATTTTCATAATTTCCTAACTGAGTTGGTACCCAGTTAA
128 TAAGACTTATTTTAATTATGGAAGGACATTTTCATAATTTCCTAACCGAGTTGGTACCCAGTTAA
* * * * * * * *
45541741 CCTATGGCACCAACTTAATCAGAGGTTTTATTAATAGTATAAATATACAACTGGCGAGGATAATA
193 ACTATGACACCAACTCAATCAGGGGTTTTATTAATAGTATAAAAATATAACTGGTGAAGATAATA
* *
45541806 AATTAT-ATATATTAAAAAGAATGTATAAAATATATT
258 AATTGTGATAT-TT-AAAA-AATGTATAAAATATATC
* * ** * * ** *
45541842 AAAATAAAGTTTTGCTCAAGTGATAAATTTAAGGTTTTACTAATCAAATTGGTGTGGGTTCAA--
1 AAAATAAAGCTTTGGTTGAGTGATAAATTTAAGATTTTACTAATCCAATTGGCATGAGTTCAATC
* * * * *
45541905 --ACCCCAT-C--A---TT-TGGTTTCTGTTAAAATGAAAAAAATTAAAATACCTTTGAATAATA
66 CCACCACATGCATATTTTTCTTGTTTTTGTTAAAAT-AAAAAGACTAAAATACCTTTGAATAATA
* * * * **
45541961 TA-ACTCATTTTAATTATAGAAGGACATTTCCATAATTTCCTAATCGAGTTGGTACCTGGTTAAC
130 -AGACTTATTTTAATTATGGAAGGACATTTTCATAATTTCCTAACCGAGTTGGTACCCAGTTAA-
* * * ** *
45542025 AC-GTGACACCAATTCAGTTTGGGGTATTATTAATAGTAAGTATATACATATATAACTGGTGAAG
193 ACTATGACACCAACTCAATCAGGGGTTTTATTAATAGT-A-TA-A-A-A-ATATAACTGGTGAAG
* *
45542089 ATAATAAATTGTGCATA-TTAAAAGA-GTATAAAATATTACC
252 ATAATAAATTGTG-ATATTTAAAAAATGTATAAAATA-TATC
* * * *
45542129 AAAGTAAAACATTGGTTGAGTGATAAATTTAAGATTTTACTAATCCAATTGGCATGGGTTCAAAT
1 AAAATAAAGCTTTGGTTGAGTGATAAATTTAAGATTTTACTAATCCAATTGGCATGAGTTC-AAT
* * * * * ** *
45542194 CTCACCATATGCATATTTTTCTTGGTTTTTGTTAAAATGAAAAGACTAAAATGCCCTCAAATGAT
65 CCCACCACATGCATATTTTTCTT-GTTTTTGTTAAAATAAAAAGACTAAAATACCTTTGAATAAT
* * * * * *
45542259 ATGATTTATTTTAATTA-CGAATGGATATTTTCGTAATTTTCTAACCGAGTTGGTAC
129 AAGACTTATTTTAATTATGGAA-GGACATTTTCATAATTTCCTAACCGAGTTGGTAC
45542315 AAGGTTAACC
Statistics
Matches: 615, Mismatches: 111, Indels: 75
0.77 0.14 0.09
Matches are distributed among these distances:
281 7 0.01
282 7 0.01
283 102 0.17
284 3 0.00
285 3 0.00
286 11 0.02
287 55 0.09
288 12 0.02
289 25 0.04
290 4 0.01
291 93 0.15
292 81 0.13
293 60 0.10
294 68 0.11
295 4 0.01
298 5 0.01
299 62 0.10
300 13 0.02
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (291 bp):
AAAATAAAGCTTTGGTTGAGTGATAAATTTAAGATTTTACTAATCCAATTGGCATGAGTTCAATC
CCACCACATGCATATTTTTCTTGTTTTTGTTAAAATAAAAAGACTAAAATACCTTTGAATAATAA
GACTTATTTTAATTATGGAAGGACATTTTCATAATTTCCTAACCGAGTTGGTACCCAGTTAAACT
ATGACACCAACTCAATCAGGGGTTTTATTAATAGTATAAAAATATAACTGGTGAAGATAATAAAT
TGTGATATTTAAAAAATGTATAAAATATATC
Found at i:45542012 original size:283 final size:280
Alignment explanation
Indices: 45541341--45542016 Score: 718
Period size: 291 Copynumber: 2.4 Consensus size: 280
45541331 CATATTTTTC
* * * * * *
45541341 TTTGATTTTTGTTAAAATAAATAGACTAAAACACCATTGAATAGTATTACTTATTTTAATTATGG
1 TTTG-TTTCTGTTAAAATAAAAAGACTAAAATACCTTTGAATAATATAACTTATTTTAATTATGG
* *
45541406 AAGGACATTTCTATACTTTCCTAACCGAGTTGGTACCCAGTTAAACTATGACACCACTCAACCAG
65 AAGGACATTTCCATAATTTCCTAA-CGAGTTGGTACCCAGTTAAACTATGACACCACTCAACCAG
* * * * *
45541471 GGGTTTTATTAATAGTATAAAAATATAACTGGTGAAGATAATAAATTGTGAATATTTAAAAAATT
129 AGGTTTTATTAATAGTATAAAAATACAACTGGCGAAGATAATAAATTATGAATATTTAAAAAAAT
** *
45541536 GTATAAAAAAATCAAAATAAAGCTTTGATTGAGTTGTAAATTTAAGGTTTTACTAATCCAATTGG
194 GTATAAAAAAATCAAAATAAAGCTTTGATCAAGTTGTAAATTTAAGGTTTTACTAATCAAATTGG
*
45541601 CACGAGTTTAACTCCCACCACATGCA
259 CACGAGTTCAA----CACCACATGCA
* * * * *
45541627 TATT-TTTCTTGTTTTTTCTAAATAAAAAGACTAAAGTGCCTTTGAATAATA-AGATTTATTTTT
1 T-TTGTTTC-TG----TT-AAAATAAAAAGACTAAAATACCTTTGAATAATATA-ACTTATTTTA
* * *
45541690 ATTATGGAAGGACATTTTCATAATTTCCTAACTGAGTTGGTACCCAGTTAACCTATGGCACCAAC
58 ATTATGGAAGGACATTTCCATAATTTCCTAAC-GAGTTGGTACCCAGTTAAACTATGACACC-AC
* * * *
45541755 TTAATCAGAGGTTTTATTAATAGTATAAATATACAACTGGCGAGGATAATAAATTAT--ATATAT
121 TCAACCAGAGGTTTTATTAATAGTATAAAAATACAACTGGCGAAGATAATAAATTATGAATAT-T
* * * *
45541818 TAAAAAGAATGTATAAAATATATTAAAATAAAGTTTTGCTCAAG-TGATAAATTTAAGGTTTTAC
185 TAAAAA-AATGTATAAAA-AAATCAAAATAAAGCTTTGATCAAGTTG-TAAATTTAAGGTTTTAC
*** * *
45541882 TAATCAAATTGGTGTGGGTTCAA-ACCCCAT-CA
247 TAATCAAATTGGCACGAGTTCAACACCACATGCA
* * * *
45541914 TTTGGTTTCTGTTAAAATGAAAAAAATTAAAATACCTTTGAATAATATAACTCATTTTAATTATA
1 TTT-GTTTCTGTTAAAAT-AAAAAGACTAAAATACCTTTGAATAATATAACTTATTTTAATTATG
45541979 GAAGGACATTTCCATAATTTCCTAATCGAGTTGGTACC
64 GAAGGACATTTCCATAATTTCCTAA-CGAGTTGGTACC
45542017 TGGTTAACAC
Statistics
Matches: 323, Mismatches: 48, Indels: 41
0.78 0.12 0.10
Matches are distributed among these distances:
282 4 0.01
283 73 0.23
284 2 0.01
285 3 0.01
286 5 0.02
287 7 0.02
288 10 0.03
290 7 0.02
291 96 0.30
292 63 0.20
293 53 0.16
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (280 bp):
TTTGTTTCTGTTAAAATAAAAAGACTAAAATACCTTTGAATAATATAACTTATTTTAATTATGGA
AGGACATTTCCATAATTTCCTAACGAGTTGGTACCCAGTTAAACTATGACACCACTCAACCAGAG
GTTTTATTAATAGTATAAAAATACAACTGGCGAAGATAATAAATTATGAATATTTAAAAAAATGT
ATAAAAAAATCAAAATAAAGCTTTGATCAAGTTGTAAATTTAAGGTTTTACTAATCAAATTGGCA
CGAGTTCAACACCACATGCA
Found at i:45543902 original size:10 final size:9
Alignment explanation
Indices: 45543863--45544019 Score: 60
Period size: 10 Copynumber: 17.4 Consensus size: 9
45543853 ACATGTGATA
45543863 AAAAATTAT
1 AAAAATTAT
45543872 AAAAA--AT
1 AAAAATTAT
*
45543879 AAAAATCAAT
1 AAAAAT-TAT
*
45543889 AAAAGTTAT
1 AAAAATTAT
45543898 AAAAATTATT
1 AAAAATTA-T
**
45543908 AAACTTTAGT
1 AAAAATTA-T
45543918 AAAAATT-T
1 AAAAATTAT
45543926 AAAAA--AT
1 AAAAATTAT
* *
45543933 TAAATTTA-
1 AAAAATTAT
45543941 AAAAATTA-
1 AAAAATTAT
*
45543949 AAATA-TAT
1 AAAAATTAT
* *
45543957 ATAAATTGT
1 AAAAATTAT
*
45543966 AAAAAATATT
1 AAAAATTA-T
* *
45543976 AAAATTTGT
1 AAAAATTAT
*
45543985 AAAATTTTAT
1 AAAA-ATTAT
*
45543995 AAAAATCATT
1 AAAAATTA-T
45544005 AAAAAAGTTAT
1 -AAAAA-TTAT
45544016 AAAA
1 AAAA
45544020 TGCATCAAAA
Statistics
Matches: 108, Mismatches: 26, Indels: 27
0.67 0.16 0.17
Matches are distributed among these distances:
7 13 0.12
8 19 0.18
9 29 0.27
10 39 0.36
11 6 0.06
12 2 0.02
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:45543910 original size:19 final size:19
Alignment explanation
Indices: 45543877--45543924 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
45543867 ATTATAAAAA
*
45543877 ATAAAAATCAATAAAAGTT
1 ATAAAAATTAATAAAAGTT
* **
45543896 ATAAAAATTATTAAACTTT
1 ATAAAAATTAATAAAAGTT
45543915 AGTAAAAATT
1 A-TAAAAATT
45543925 TAAAAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (19 bp):
ATAAAAATTAATAAAAGTT
Found at i:45543939 original size:14 final size:14
Alignment explanation
Indices: 45543920--45543950 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
45543910 ACTTTAGTAA
45543920 AAATTTAAAAAATT
1 AAATTTAAAAAATT
45543934 AAATTTAAAAAATT
1 AAATTTAAAAAATT
45543948 AAA
1 AAA
45543951 ATATATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
AAATTTAAAAAATT
Found at i:45543969 original size:68 final size:69
Alignment explanation
Indices: 45543865--45544000 Score: 172
Period size: 68 Copynumber: 2.0 Consensus size: 69
45543855 ATGTGATAAA
* *
45543865 AAATTATAAAAAATAAAAATCAATAAAAGTTATAAAAATTATTAAACTTTAGTAAAAATTTA-AA
1 AAATTATAAAAAATAAAAATCAATAAAAGTTATAAAAAATATTAAAATTT-GTAAAAATTTATAA
45543929 AAATT
65 AAATT
* * *
45543934 AAATT-TAAAAAATTAAAAT-ATATATAAA-TTGTAAAAAATATTAAAATTTGTAAAATTTTATA
1 AAATTATAAAAAATAAAAATCA-ATA-AAAGTTATAAAAAATATTAAAATTTGTAAAAATTTATA
45543996 AAAAT
64 AAAAT
45544001 CATTAAAAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
67 11 0.19
68 40 0.68
69 8 0.14
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (69 bp):
AAATTATAAAAAATAAAAATCAATAAAAGTTATAAAAAATATTAAAATTTGTAAAAATTTATAAA
AATT
Found at i:45543974 original size:18 final size:19
Alignment explanation
Indices: 45543948--45543988 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
45543938 TTAAAAAATT
45543948 AAAATATATATAAA-TTGTAA
1 AAAATAT-TA-AAATTTGTAA
45543968 AAAATATTAAAATTTGTAA
1 AAAATATTAAAATTTGTAA
45543987 AA
1 AA
45543989 TTTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 3 0.15
19 10 0.50
20 7 0.35
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (19 bp):
AAAATATTAAAATTTGTAA
Found at i:45544015 original size:21 final size:21
Alignment explanation
Indices: 45543991--45544033 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
45543981 TTGTAAAATT
*
45543991 TTATAAAAAT-CATTAAAAAAG
1 TTAT-AAAATGCATCAAAAAAG
45544012 TTATAAAATGCATCAAAAAAG
1 TTATAAAATGCATCAAAAAAG
45544033 T
1 T
45544034 CATTTAACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (21 bp):
TTATAAAATGCATCAAAAAAG
Found at i:45544286 original size:19 final size:19
Alignment explanation
Indices: 45544264--45544318 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
45544254 GTTTTCTATA
45544264 TTTCTATATATTTTATAAT
1 TTTCTATATATTTTATAAT
*
45544283 TTTCTACGAT-TTTTATAAT
1 TTTCTA-TATATTTTATAAT
*
45544302 TTTTTATA-ATTTT-TAAT
1 TTTCTATATATTTTATAAT
45544319 AAAAATTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 4 0.13
18 5 0.16
19 20 0.65
20 2 0.06
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTCTATATATTTTATAAT
Found at i:45544305 original size:10 final size:10
Alignment explanation
Indices: 45544274--45544320 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
45544264 TTTCTATATA
45544274 TTTTATAATT
1 TTTTATAATT
* **
45544284 TTCTACGA-T
1 TTTTATAATT
45544293 TTTTATAATT
1 TTTTATAATT
45544303 TTTTATAATT
1 TTTTATAATT
*
45544313 TTTAATAA
1 TTTTATAA
45544321 AAATTAAATA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
9 6 0.21
10 23 0.79
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (10 bp):
TTTTATAATT
Found at i:45544373 original size:29 final size:29
Alignment explanation
Indices: 45544297--45544376 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 29
45544287 TACGATTTTT
*
45544297 ATAATTTTTTATAATTTTTAATAAAAATTA
1 ATAA-TTTTTATAATTTTTATTAAAAATTA
* *
45544327 A-ATATTTCTTGT-ATTTTTATTAAAATTTA
1 ATA-ATTT-TTATAATTTTTATTAAAAATTA
*
45544356 ATAATTTTTATAACTTTTATT
1 ATAATTTTTATAATTTTTATT
45544377 TATTTTTTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
28 3 0.07
29 32 0.78
30 6 0.15
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (29 bp):
ATAATTTTTATAATTTTTATTAAAAATTA
Found at i:45544581 original size:23 final size:23
Alignment explanation
Indices: 45544549--45544600 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
45544539 TTTTTTTTAT
45544549 TTTTTG-AAAAAGATTAAGAGTC
1 TTTTTGAAAAAAGATTAAGAGTC
* *
45544571 TTTTTGAAAAAAGTTTGAGAGTC
1 TTTTTGAAAAAAGATTAAGAGTC
45544594 TTTTTGA
1 TTTTTGA
45544601 TGTATTTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 6 0.22
23 21 0.78
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.42
Consensus pattern (23 bp):
TTTTTGAAAAAAGATTAAGAGTC
Found at i:45546653 original size:17 final size:17
Alignment explanation
Indices: 45546622--45546654 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
45546612 AAGTGAAACT
45546622 AGGGAGGAAATAATAAA
1 AGGGAGGAAATAATAAA
45546639 AGGGTAGGAAA-AATAA
1 AGGG-AGGAAATAATAA
45546655 TTAGAGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.58, C:0.00, G:0.30, T:0.12
Consensus pattern (17 bp):
AGGGAGGAAATAATAAA
Found at i:45547192 original size:5 final size:5
Alignment explanation
Indices: 45547182--45547207 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
45547172 GCTTTCCTCG
45547182 CCCAA CCCAA CCCAA CCCAA CCCAA C
1 CCCAA CCCAA CCCAA CCCAA CCCAA C
45547208 GTTCCCCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.62, G:0.00, T:0.00
Consensus pattern (5 bp):
CCCAA
Found at i:45558073 original size:11 final size:11
Alignment explanation
Indices: 45558059--45558086 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
45558049 GAGTCGAGTT
45558059 AAATTTTATTC
1 AAATTTTATTC
45558070 AAATTTTATTC
1 AAATTTTATTC
45558081 AAATTT
1 AAATTT
45558087 CAAGTTTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (11 bp):
AAATTTTATTC
Found at i:45558074 original size:45 final size:45
Alignment explanation
Indices: 45558025--45558111 Score: 174
Period size: 45 Copynumber: 1.9 Consensus size: 45
45558015 ATTAACTTGA
45558025 AAATTTTATTCAAATTTCAAGTTTGAGTCGAGTTAAATTTTATTC
1 AAATTTTATTCAAATTTCAAGTTTGAGTCGAGTTAAATTTTATTC
45558070 AAATTTTATTCAAATTTCAAGTTTGAGTCGAGTTAAATTTTA
1 AAATTTTATTCAAATTTCAAGTTTGAGTCGAGTTAAATTTTA
45558112 AAATTTAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.46
Consensus pattern (45 bp):
AAATTTTATTCAAATTTCAAGTTTGAGTCGAGTTAAATTTTATTC
Found at i:45558470 original size:21 final size:21
Alignment explanation
Indices: 45558436--45558482 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
45558426 GAACAATTTC
*
45558436 ACTCG-ATTTAATTTGACTTG
1 ACTCGAATTTAATTTGACTCG
* *
45558456 ACTCGAATTTCATTTTACTCG
1 ACTCGAATTTAATTTGACTCG
45558477 ACTCGA
1 ACTCGA
45558483 TTAAGAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (21 bp):
ACTCGAATTTAATTTGACTCG
Found at i:45559069 original size:11 final size:12
Alignment explanation
Indices: 45559053--45559111 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 12
45559043 AAATAGATTC
45559053 TAAAAAATA-AA
1 TAAAAAATATAA
*
45559064 TAAAAATTATAA
1 TAAAAAATATAA
*
45559076 -AAAAAATGTAA
1 TAAAAAATATAA
*
45559087 TAATAAAAATGTAA
1 T-A-AAAAATATAA
*
45559101 TAAAAATTATA
1 TAAAAAATATA
45559112 GAAATATATC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
11 17 0.44
12 9 0.23
13 2 0.05
14 11 0.28
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.27
Consensus pattern (12 bp):
TAAAAAATATAA
Found at i:45559076 original size:20 final size:20
Alignment explanation
Indices: 45559035--45559079 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
45559025 TATATGTAAT
* *
45559035 AAAAATAAAAATAGATTCTA
1 AAAAATAAAAATAAATTATA
45559055 AAAAATAAATAA-AAATTATA
1 AAAAATAAA-AATAAATTATA
45559075 AAAAA
1 AAAAA
45559080 AATGTAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (20 bp):
AAAAATAAAAATAAATTATA
Found at i:45559094 original size:14 final size:14
Alignment explanation
Indices: 45559062--45559103 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
45559052 CTAAAAAATA
45559062 AATAAAAAT-T-AT
1 AATAAAAATGTAAT
*
45559074 AAAAAAAATGTAAT
1 AATAAAAATGTAAT
45559088 AATAAAAATGTAAT
1 AATAAAAATGTAAT
45559102 AA
1 AA
45559104 AAATTATAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 8 0.31
13 1 0.04
14 17 0.65
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (14 bp):
AATAAAAATGTAAT
Found at i:45569037 original size:21 final size:22
Alignment explanation
Indices: 45569011--45569069 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
45569001 GTTTTAAGAA
*
45569011 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
45569032 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
45569054 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
45569070 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:45569084 original size:26 final size:24
Alignment explanation
Indices: 45569040--45569089 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
45569030 ATTTGTTTTA
*
45569040 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
45569064 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
45569090 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:45571242 original size:69 final size:68
Alignment explanation
Indices: 45571127--45571261 Score: 184
Period size: 69 Copynumber: 2.0 Consensus size: 68
45571117 TTTGTATAGC
* *
45571127 TGGGAGCTTTGCTTTCACTAACTATTTTAGAGGTCGCGGCTCTTCTCCTGA-GAGCTTTGATTTT
1 TGGGAGCTTTGCTCTCACTAACTATTTTAGAGGTCGCGACTCTTCT-CT-ACGAGCTTTGATTTT
45571191 ACAGT
64 ACAGT
* * *
45571196 TGGGAGCTTTAG-TCTCGCTAATTATTTTAGAGGTCGCGACTTTTCTCTACGAGCTTTGATTTTA
1 TGGGAGCTTT-GCTCTCACTAACTATTTTAGAGGTCGCGACTCTTCTCTACGAGCTTTGATTTTA
45571260 CA
65 CA
45571262 TCACTAATTA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
67 1 0.02
68 18 0.31
69 39 0.66
70 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (68 bp):
TGGGAGCTTTGCTCTCACTAACTATTTTAGAGGTCGCGACTCTTCTCTACGAGCTTTGATTTTAC
AGT
Found at i:45571273 original size:52 final size:53
Alignment explanation
Indices: 45571213--45571314 Score: 143
Period size: 52 Copynumber: 1.9 Consensus size: 53
45571203 TTTAGTCTCG
* * *
45571213 CTAATTATTTTAGAGGTCGCGACTTTTC-TCTACGAGCTTTGATTTTACATCA
1 CTAATTATTTTAGAGGTCACGACTCTTCGCCTACGAGCTTTGATTTTACATCA
* * *
45571265 CTAATTATTTTGGAGGTTACGGCTCTTCGCCTACGAGCTTTGATTTTACA
1 CTAATTATTTTAGAGGTCACGACTCTTCGCCTACGAGCTTTGATTTTACA
45571315 GTTAGGAGCT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
52 23 0.53
53 20 0.47
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.41
Consensus pattern (53 bp):
CTAATTATTTTAGAGGTCACGACTCTTCGCCTACGAGCTTTGATTTTACATCA
Found at i:45572900 original size:93 final size:93
Alignment explanation
Indices: 45572787--45572958 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
45572777 CGCCCATAAG
* *
45572787 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45572852 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
45572880 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45572945 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
45572959 TCAATCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:45572955 original size:46 final size:46
Alignment explanation
Indices: 45572780--45572955 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
45572770 TGTAACCCGC
* * *
45572780 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
45572826 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
45572876 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
45572919 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
45572956 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:45579977 original size:93 final size:93
Alignment explanation
Indices: 45579864--45580035 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
45579854 CGCCCATAAG
* *
45579864 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45579929 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
45579957 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45580022 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
45580036 TCAATCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:45580032 original size:46 final size:46
Alignment explanation
Indices: 45579857--45580032 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
45579847 TGTAACCCGC
* * *
45579857 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
45579903 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
45579953 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
45579996 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
45580033 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:45580986 original size:69 final size:69
Alignment explanation
Indices: 45580860--45581106 Score: 307
Period size: 69 Copynumber: 3.6 Consensus size: 69
45580850 ATTACACTAT
* * ** ** * * * *
45580860 CTATTTTGGAGGTCGCGGCTTTTTACTTGTGAGCCTTG-TTTTATAGGTTTGAGCTTTGTTCTCG
1 CTATTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCTTGATTTTATAGCTGTGAGCTTTGGTCTCG
45580924 CTAA
66 CTAA
* * * * *
45580928 CTATTTTGGAGGTTGTGGCTCTTTGCTTGCAAACCTTTATTTTATAGCTGTGAACTTTGGTCCCG
1 CTATTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCTTGATTTTATAGCTGTGAGCTTTGGTCTCG
45580993 CTAA
66 CTAA
* * * *
45580997 CTGTTTTGAAGGTCGCGGCTCTTCGCTTGCAAACCTTGATTTTACAGCTGTGAGCTTTGGTCTCG
1 CTATTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCTTGATTTTATAGCTGTGAGCTTTGGTCTCG
45581062 CTAA
66 CTAA
*
45581066 CTATTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCTCGATT
1 CTATTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCTTGATT
45581107 CATGAATCTT
Statistics
Matches: 152, Mismatches: 26, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
68 30 0.20
69 122 0.80
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.40
Consensus pattern (69 bp):
CTATTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCTTGATTTTATAGCTGTGAGCTTTGGTCTCG
CTAA
Found at i:45581273 original size:69 final size:68
Alignment explanation
Indices: 45581125--45581274 Score: 156
Period size: 69 Copynumber: 2.2 Consensus size: 68
45581115 TTCGCCTGTG
* * *
45581125 AACCTTGACTTTATAGCTTGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTTTTCACC
1 AACC-TGATTTTATAGCTAGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTCTTCACC
*
45581190 TGCG
65 TGCA
* * * * * * * *
45581194 AGCCGTGATTTTATAGGTAGGAGCTTTGTTCTCGCTAACTGTTTTGGAGGTCGCGGCTCTTCGCT
1 AACC-TGATTTTATAGCTAGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTCTTCACC
*
45581259 TTCA
65 TGCA
45581263 AACCTCGATTTT
1 AACCT-GATTTT
45581275 GTCGATGATA
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
68 1 0.02
69 64 0.98
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.37
Consensus pattern (68 bp):
AACCTGATTTTATAGCTAGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTCTTCACCT
GCA
Found at i:45581796 original size:69 final size:69
Alignment explanation
Indices: 45581657--45581901 Score: 294
Period size: 69 Copynumber: 3.6 Consensus size: 69
45581647 GGATATTACA
* ** ** * * * * *
45581657 CTAACTATTTTGGAGGTCGCGGCTTTTTACTTGTGAGCC-TTGTTTTATAGGTTTGAGCTTTGTT
1 CTAACTATTTTGGAGGTCGCGGCTCTTCGCTTGCAAACCTTTATTTTATAGCTGTGAGCTTTGGT
45581721 CTCG
66 CTCG
* * * *
45581725 CTAACTATTTTGGAGGTTGTGGCTCTTTGCTTGCAAACCTTTATTTTATAGCTGTGAACTTTGGT
1 CTAACTATTTTGGAGGTCGCGGCTCTTCGCTTGCAAACCTTTATTTTATAGCTGTGAGCTTTGGT
*
45581790 CCCG
66 CTCG
* * * *
45581794 CTAACTGTTTTGAAGGTCGCGGCTCTTCGCTTGCAAACCTTGATTTTACAGCTGTGAGCTTTGGT
1 CTAACTATTTTGGAGGTCGCGGCTCTTCGCTTGCAAACCTTTATTTTATAGCTGTGAGCTTTGGT
45581859 CTCG
66 CTCG
* *
45581863 CTAACTGTTTTGGAGGTTGCGGCTCTTCGCTTGCAAACC
1 CTAACTATTTTGGAGGTCGCGGCTCTTCGCTTGCAAACC
45581902 CCGATTCATG
Statistics
Matches: 152, Mismatches: 24, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
68 32 0.21
69 120 0.79
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (69 bp):
CTAACTATTTTGGAGGTCGCGGCTCTTCGCTTGCAAACCTTTATTTTATAGCTGTGAGCTTTGGT
CTCG
Found at i:45582074 original size:69 final size:68
Alignment explanation
Indices: 45581926--45582075 Score: 156
Period size: 69 Copynumber: 2.2 Consensus size: 68
45581916 TTCGCCTGTG
* * *
45581926 AACCTTGACTTTATAGCTTGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTTTTCACC
1 AACC-TGATTTTATAGCTAGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTCTTCACC
*
45581991 TGCG
65 TGCA
* * * * * * * *
45581995 AGCCGTGATTTTATAGGTAGGAGCTTTGTTCTCGCTAACTGTTTTGGAGGTCGCGGCTCTTCGCT
1 AACC-TGATTTTATAGCTAGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTCTTCACC
*
45582060 TTCA
65 TGCA
45582064 AACCTCGATTTT
1 AACCT-GATTTT
45582076 GTCGATGATA
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
68 1 0.02
69 64 0.98
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.37
Consensus pattern (68 bp):
AACCTGATTTTATAGCTAGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTCTTCACCT
GCA
Found at i:45582142 original size:801 final size:801
Alignment explanation
Indices: 45580601--45582204 Score: 3163
Period size: 801 Copynumber: 2.0 Consensus size: 801
45580591 GGTCAAATTT
45580601 CTATTTAAGACCTCCTCATTAATATTCCAAAACAATTTCATACTAAAAACTTCTAGAATGCAAGT
1 CTATTTAAGACCTCCTCATTAATATTCCAAAACAATTTCATACTAAAAACTTCTAGAATGCAAGT
45580666 TTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAGCACTTTAGGCATAGAATTTCATCAC
66 TTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAGCACTTTAGGCATAGAATTTCATCAC
*
45580731 GAAATTTTCACACAATCATGCAATCATATCATAAACCTCAAAATAATTATAAAATAATTATTTCT
131 GAAATTTTCACACAATCACGCAATCATATCATAAACCTCAAAATAATTATAAAATAATTATTTCT
*
45580796 ATCTCGGATTTGTGGTCACGAAACCACTATTCCGATTAGGCCCTAATTCGGGATATTACACTATC
196 ATCTCGGATTTGTGGTCACGAAACCACTATTCCGATTAGGCCCTAATTCGGGATATTACACTAAC
45580861 TATTTTGGAGGTCGCGGCTTTTTACTTGTGAGCCTTGTTTTATAGGTTTGAGCTTTGTTCTCGCT
261 TATTTTGGAGGTCGCGGCTTTTTACTTGTGAGCCTTGTTTTATAGGTTTGAGCTTTGTTCTCGCT
45580926 AACTATTTTGGAGGTTGTGGCTCTTTGCTTGCAAACCTTTATTTTATAGCTGTGAACTTTGGTCC
326 AACTATTTTGGAGGTTGTGGCTCTTTGCTTGCAAACCTTTATTTTATAGCTGTGAACTTTGGTCC
45580991 CGCTAACTGTTTTGAAGGTCGCGGCTCTTCGCTTGCAAACCTTGATTTTACAGCTGTGAGCTTTG
391 CGCTAACTGTTTTGAAGGTCGCGGCTCTTCGCTTGCAAACCTTGATTTTACAGCTGTGAGCTTTG
*
45581056 GTCTCGCTAACTATTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCTCGATTCATGAATCTTCGCC
456 GTCTCGCTAACTATTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCCCGATTCATGAATCTTCGCC
45581121 TGTGAACCTTGACTTTATAGCTTGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTTTT
521 TGTGAACCTTGACTTTATAGCTTGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTTTT
45581186 CACCTGCGAGCCGTGATTTTATAGGTAGGAGCTTTGTTCTCGCTAACTGTTTTGGAGGTCGCGGC
586 CACCTGCGAGCCGTGATTTTATAGGTAGGAGCTTTGTTCTCGCTAACTGTTTTGGAGGTCGCGGC
45581251 TCTTCGCTTTCAAACCTCGATTTTGTCGATGATAGTTTTTTAGAATGGAATTTTATTCATAGGAT
651 TCTTCGCTTTCAAACCTCGATTTTGTCGATGATAGTTTTTTAGAATGGAATTTTATTCATAGGAT
45581316 GGATATTCATACATAGTATTTTTTGAGGTGTTGGGCATTCCAAGTTCGCAGTACTATCTTGCCTT
716 GGATATTCATACATAGTATTTTTTGAGGTGTTGGGCATTCCAAGTTCGCAGTACTATCTTGCCTT
45581381 CTATTCTTAGCAACTTATACG
781 CTATTCTTAGCAACTTATACG
45581402 CTATTTAAGACCTCCTCATTAATATTCCAAAACAATTTCATACTAAAAACTTCTAGAATGCAAGT
1 CTATTTAAGACCTCCTCATTAATATTCCAAAACAATTTCATACTAAAAACTTCTAGAATGCAAGT
45581467 TTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAGCACTTTAGGCATAGAATTTCATCAC
66 TTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAGCACTTTAGGCATAGAATTTCATCAC
45581532 GAAATTTTCACACAATCACGCAATCATATCATAAACCTCAAAATAATTATAAAATAATTATTTCT
131 GAAATTTTCACACAATCACGCAATCATATCATAAACCTCAAAATAATTATAAAATAATTATTTCT
*
45581597 ATCTCGGATTTGTGGTCACGAAACCACTATTCTGATTAGGCCCTAATTCGGGATATTACACTAAC
196 ATCTCGGATTTGTGGTCACGAAACCACTATTCCGATTAGGCCCTAATTCGGGATATTACACTAAC
45581662 TATTTTGGAGGTCGCGGCTTTTTACTTGTGAGCCTTGTTTTATAGGTTTGAGCTTTGTTCTCGCT
261 TATTTTGGAGGTCGCGGCTTTTTACTTGTGAGCCTTGTTTTATAGGTTTGAGCTTTGTTCTCGCT
45581727 AACTATTTTGGAGGTTGTGGCTCTTTGCTTGCAAACCTTTATTTTATAGCTGTGAACTTTGGTCC
326 AACTATTTTGGAGGTTGTGGCTCTTTGCTTGCAAACCTTTATTTTATAGCTGTGAACTTTGGTCC
45581792 CGCTAACTGTTTTGAAGGTCGCGGCTCTTCGCTTGCAAACCTTGATTTTACAGCTGTGAGCTTTG
391 CGCTAACTGTTTTGAAGGTCGCGGCTCTTCGCTTGCAAACCTTGATTTTACAGCTGTGAGCTTTG
*
45581857 GTCTCGCTAACTGTTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCCCGATTCATGAATCTTCGCC
456 GTCTCGCTAACTATTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCCCGATTCATGAATCTTCGCC
45581922 TGTGAACCTTGACTTTATAGCTTGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTTTT
521 TGTGAACCTTGACTTTATAGCTTGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTTTT
45581987 CACCTGCGAGCCGTGATTTTATAGGTAGGAGCTTTGTTCTCGCTAACTGTTTTGGAGGTCGCGGC
586 CACCTGCGAGCCGTGATTTTATAGGTAGGAGCTTTGTTCTCGCTAACTGTTTTGGAGGTCGCGGC
45582052 TCTTCGCTTTCAAACCTCGATTTTGTCGATGATAGTTTTTTAGAATGGAATTTTATTCATAGGAT
651 TCTTCGCTTTCAAACCTCGATTTTGTCGATGATAGTTTTTTAGAATGGAATTTTATTCATAGGAT
45582117 GGATATTCATACATAGTATTTTTTGAGGTGTTGGGCATTCCAAGTTCGCAGTACTATCTTGCCTT
716 GGATATTCATACATAGTATTTTTTGAGGTGTTGGGCATTCCAAGTTCGCAGTACTATCTTGCCTT
45582182 CTATTCTTAGCAACTTATACG
781 CTATTCTTAGCAACTTATACG
45582203 CT
1 CT
45582205 CCATAGCCTA
Statistics
Matches: 798, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
801 798 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (801 bp):
CTATTTAAGACCTCCTCATTAATATTCCAAAACAATTTCATACTAAAAACTTCTAGAATGCAAGT
TTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTAAGCACTTTAGGCATAGAATTTCATCAC
GAAATTTTCACACAATCACGCAATCATATCATAAACCTCAAAATAATTATAAAATAATTATTTCT
ATCTCGGATTTGTGGTCACGAAACCACTATTCCGATTAGGCCCTAATTCGGGATATTACACTAAC
TATTTTGGAGGTCGCGGCTTTTTACTTGTGAGCCTTGTTTTATAGGTTTGAGCTTTGTTCTCGCT
AACTATTTTGGAGGTTGTGGCTCTTTGCTTGCAAACCTTTATTTTATAGCTGTGAACTTTGGTCC
CGCTAACTGTTTTGAAGGTCGCGGCTCTTCGCTTGCAAACCTTGATTTTACAGCTGTGAGCTTTG
GTCTCGCTAACTATTTTGGAGGTTGCGGCTCTTCGCTTGCAAACCCCGATTCATGAATCTTCGCC
TGTGAACCTTGACTTTATAGCTTGGAGCTTTGATCTAGCTAACTGTTTTAGAGGTCGCGACTTTT
CACCTGCGAGCCGTGATTTTATAGGTAGGAGCTTTGTTCTCGCTAACTGTTTTGGAGGTCGCGGC
TCTTCGCTTTCAAACCTCGATTTTGTCGATGATAGTTTTTTAGAATGGAATTTTATTCATAGGAT
GGATATTCATACATAGTATTTTTTGAGGTGTTGGGCATTCCAAGTTCGCAGTACTATCTTGCCTT
CTATTCTTAGCAACTTATACG
Found at i:45600520 original size:171 final size:171
Alignment explanation
Indices: 45600230--45600537 Score: 424
Period size: 171 Copynumber: 1.8 Consensus size: 171
45600220 TTCATTTGTT
*
45600230 AACACAGCTCACAGACCTACGCTCCTAGCTGATGTTTAAAAGTTAGATGAGTTATACTCACATCC
1 AACACAGCTCACAGACCTACGCTCCTAGCTGATGTTTAAAAGTTAGATGAGTTATACTCACAACC
* * * *
45600295 TTCATTTATTAGAGTTAGCTTAGTCAAGCTCACAATTGCGAAACAACACATGGACCTATGCTCCT
66 TTCATTTATTAGAGTAAGCTGAGTCAAGCTCACAACTGCGAAACAACACATGGACCTATGCTCCC
45600360 AACTGATAGCTCGAGACCTACGTGCCCAGCTGATAAACTTC
131 AACTGATAGCTCGAGACCTACGTGCCCAGCTGATAAACTTC
* * * * * *
45600401 AACACAGCTCGC-GATCCTATGCTCTTAGTTGATGTTTAAAGGTTAGATGAGTTATACTCATAAC
1 AACACAGCTCACAGA-CCTACGCTCCTAGCTGATGTTTAAAAGTTAGATGAGTTATACTCACAAC
* * * **
45600465 CTTCATTTATTTGAGTAAGCTGAGTCAAGCTCACTACT-CTAAA-ATAGTTCATGGACCTATGCT
65 CTTCATTTATTAGAGTAAGCTGAGTCAAGCTCACAACTGCGAAACA-A-CACATGGACCTATGCT
45600528 CCCAACTGAT
128 CCCAACTGAT
45600538 GTTTTAAGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
169 1 0.01
170 7 0.06
171 110 0.93
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (171 bp):
AACACAGCTCACAGACCTACGCTCCTAGCTGATGTTTAAAAGTTAGATGAGTTATACTCACAACC
TTCATTTATTAGAGTAAGCTGAGTCAAGCTCACAACTGCGAAACAACACATGGACCTATGCTCCC
AACTGATAGCTCGAGACCTACGTGCCCAGCTGATAAACTTC
Found at i:45601020 original size:16 final size:16
Alignment explanation
Indices: 45600999--45601029 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45600989 CATTAGTAAA
*
45600999 TCAACTTAAAATTTTT
1 TCAACTCAAAATTTTT
45601015 TCAACTCAAAATTTT
1 TCAACTCAAAATTTT
45601030 CATTCCATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (16 bp):
TCAACTCAAAATTTTT
Found at i:45603841 original size:33 final size:33
Alignment explanation
Indices: 45603767--45603873 Score: 144
Period size: 33 Copynumber: 3.2 Consensus size: 33
45603757 TCTTTGTTTT
*
45603767 GTGTGTTGATTGGATTAGCTCTTATGAGCATTG
1 GTGTGTTGGTTGGATTAGCTCTTATGAGCATTG
45603800 GTGTGTTGGTTGGATTAGCTCTTATGAGCATTG
1 GTGTGTTGGTTGGATTAGCTCTTATGAGCATTG
** * *
45603833 GTGTGTTGGAGGGATTGGCTC-GAGTGAGCATCTG
1 GTGTGTTGGTTGGATTAGCTCTTA-TGAGCAT-TG
45603867 GTGTGTT
1 GTGTGTT
45603874 TGTTTGGACT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
32 1 0.01
33 57 0.85
34 9 0.13
ACGTcount: A:0.15, C:0.09, G:0.36, T:0.39
Consensus pattern (33 bp):
GTGTGTTGGTTGGATTAGCTCTTATGAGCATTG
Found at i:45609263 original size:22 final size:22
Alignment explanation
Indices: 45609232--45609285 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
45609222 GTACCAGGGT
*
45609232 CACACGGGCGGGTCCCTTAGAC
1 CACACGGGCGAGTCCCTTAGAC
*
45609254 CACACAGGCGAGTCCCTTAGAC
1 CACACGGGCGAGTCCCTTAGAC
45609276 CACACGGGCG
1 CACACGGGCG
45609286 TGTGAGCCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.37, G:0.30, T:0.11
Consensus pattern (22 bp):
CACACGGGCGAGTCCCTTAGAC
Found at i:45614049 original size:19 final size:19
Alignment explanation
Indices: 45614022--45614060 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
45614012 AGTGAGACTG
*
45614022 GTCGGGAAAGGGCCAAGGT
1 GTCGAGAAAGGGCCAAGGT
**
45614041 GTCGAGAAAGTTCCAAGGT
1 GTCGAGAAAGGGCCAAGGT
45614060 G
1 G
45614061 AATAAAGTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.28, C:0.15, G:0.41, T:0.15
Consensus pattern (19 bp):
GTCGAGAAAGGGCCAAGGT
Found at i:45615979 original size:7 final size:7
Alignment explanation
Indices: 45615967--45616001 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
45615957 TTAAAAAAAA
45615967 TTAATTT
1 TTAATTT
45615974 TTAATTT
1 TTAATTT
45615981 TTAATTT
1 TTAATTT
45615988 TTAATTT
1 TTAATTT
45615995 TTAATTT
1 TTAATTT
45616002 CTAAAAAACG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTAATTT
Found at i:45620362 original size:20 final size:20
Alignment explanation
Indices: 45620329--45620403 Score: 77
Period size: 19 Copynumber: 3.9 Consensus size: 20
45620319 ATGCAAATTC
*
45620329 TTTTTCATAATTTTATATAA
1 TTTTTAATAATTTTATATAA
*
45620349 TTTTTAAT-ATTTT-T-TTA
1 TTTTTAATAATTTTATATAA
45620366 TTTTTAATAAATTTTATA-AA
1 TTTTTAAT-AATTTTATATAA
* *
45620386 TTTTTAAAAATTCTATAT
1 TTTTTAATAATTTTATAT
45620404 TTTATAATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
17 10 0.22
18 1 0.02
19 18 0.40
20 16 0.36
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTTAATAATTTTATATAA
Found at i:45620380 original size:17 final size:17
Alignment explanation
Indices: 45620348--45620412 Score: 51
Period size: 17 Copynumber: 3.6 Consensus size: 17
45620338 ATTTTATATA
**
45620348 ATTTTTAATATTTTTTT
1 ATTTTTAATAAATTTTT
45620365 ATTTTTAATAAATTTTAT
1 ATTTTTAATAAATTTT-T
*
45620383 AAATTTTTAA-AAATTCTAT
1 --ATTTTTAATAAATT-TTT
45620402 ATTTTATAATA
1 ATTTT-TAATA
45620413 TTTAAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
17 19 0.49
18 4 0.10
19 7 0.18
20 9 0.23
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTTAATAAATTTTT
Found at i:45620431 original size:25 final size:26
Alignment explanation
Indices: 45620376--45620434 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
45620366 TTTTTAATAA
* *
45620376 ATTTTATAAATTTTTAAAAATTCTAT
1 ATTTTATAAATTTTAAAAAAATCTAT
45620402 ATTTTAT-AATATTTAAAAAAATCTAT
1 ATTTTATAAAT-TTTAAAAAAATCTAT
*
45620428 TTTTTAT
1 ATTTTAT
45620435 TTTAAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 3 0.10
26 26 0.90
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54
Consensus pattern (26 bp):
ATTTTATAAATTTTAAAAAAATCTAT
Found at i:45621863 original size:22 final size:23
Alignment explanation
Indices: 45621838--45621881 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
45621828 TAAGGTTATT
*
45621838 TTAGTAAATTAA-TAAAAACATG
1 TTAGTAAAATAATTAAAAACATG
45621860 TTAGTAAAATAATTTAAAAACA
1 TTAGTAAAATAA-TTAAAAACA
45621882 AAGGTCATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
24 8 0.42
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (23 bp):
TTAGTAAAATAATTAAAAACATG
Found at i:45630067 original size:26 final size:26
Alignment explanation
Indices: 45630015--45630085 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
45630005 TGTTCCGACC
**
45630015 CACAGCTCATGTGAGCAGGCCCATTT
1 CACAGCTCATGTGAGCATACCCATTT
* *
45630041 CACAGCTCATGTGAGCATACTCTTTT
1 CACAGCTCATGTGAGCATACCCATTT
* *
45630067 CACAGCTCCTATGAGCATA
1 CACAGCTCATGTGAGCATA
45630086 TATGTAAAGG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (26 bp):
CACAGCTCATGTGAGCATACCCATTT
Found at i:45633137 original size:144 final size:144
Alignment explanation
Indices: 45632877--45633206 Score: 452
Period size: 144 Copynumber: 2.3 Consensus size: 144
45632867 TGAATTGTCG
* * * * * *
45632877 ATGCCATGTTCCAAACATGGTCTTAAACTAGCTCACATGTCAAGGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAGGCCAATGCCACGTCCCAGACA
* * * *
45632942 TGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTC
66 TGGTCTTACACTAGCTCTCGACACAATGCCAATGCCATGTCCTAAACATGGTCTTACACTGGCTC
45633007 TCATAAT-GTGGCCA
131 TCAT-ATCGTGGCCA
* * * *
45633021 ATGCCATGTCCCAGACATGGCCTTACACTAGCGCACATATCAATGCCAATGCCACGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAGGCCAATGCCACGTCCCAGACA
45633086 TGGTCTTACACTAGCTCTC-ACA-ACATCGCCAATGCCATGTTCC-AAACATGGTCTTACACTGG
66 TGGTCTTACACTAGCTCTCGACACA-AT-GCCAATGCCATG-TCCTAAACATGGTCTTACACTGG
*
45633148 CTCTCATATCGTGGCCG
128 CTCTCATATCGTGGCCA
*
45633165 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
45633207 CCCAAATGTC
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
142 1 0.01
143 5 0.03
144 156 0.95
145 3 0.02
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAGGCCAATGCCACGTCCCAGACA
TGGTCTTACACTAGCTCTCGACACAATGCCAATGCCATGTCCTAAACATGGTCTTACACTGGCTC
TCATATCGTGGCCA
Found at i:45633205 original size:48 final size:48
Alignment explanation
Indices: 45632877--45633193 Score: 361
Period size: 48 Copynumber: 6.6 Consensus size: 48
45632867 TGAATTGTCG
* * * * * *
45632877 ATGCCATGTTCCAAACATGGTCTTAAACTAGCTCACATGTCAAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGCCA
* * *
45632925 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAAT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGGCCA
* * *
45632973 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCATGGCCA
* * *
45633021 ATGCCATGTCCCAGACATGGCCTTACACTAGCGCACATATCAAT-GCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGGCCA
* * * * *
45633069 ATGCCACGTCCTAGACATGGTCTTACACTAGCTCTCACAACATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGCCA
* * * * *
45633117 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGCCA
45633165 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
45633194 GGCACACATA
Statistics
Matches: 224, Mismatches: 39, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
47 5 0.02
48 216 0.96
49 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGCCA
Found at i:45639680 original size:25 final size:23
Alignment explanation
Indices: 45639651--45639698 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
45639641 TTTAGTACTT
45639651 CTCTTTTACTTGTAATGATATTTCA
1 CTCTTTT-CTT-TAATGATATTTCA
* *
45639676 CTCTTTTGTTTAATGTTATTTCA
1 CTCTTTTCTTTAATGATATTTCA
45639699 ATTTTGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 12 0.57
24 2 0.10
25 7 0.33
ACGTcount: A:0.21, C:0.15, G:0.08, T:0.56
Consensus pattern (23 bp):
CTCTTTTCTTTAATGATATTTCA
Found at i:45648649 original size:14 final size:14
Alignment explanation
Indices: 45648630--45648660 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
45648620 TAGATGTATA
45648630 TCAAACATATCATT
1 TCAAACATATCATT
45648644 TCAAACATATCATT
1 TCAAACATATCATT
45648658 TCA
1 TCA
45648661 TACTTCTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (14 bp):
TCAAACATATCATT
Found at i:45650070 original size:41 final size:44
Alignment explanation
Indices: 45650007--45650131 Score: 159
Period size: 43 Copynumber: 2.9 Consensus size: 44
45649997 TGCTATCACG
** *
45650007 TATCGATGCCTCTGTCCCAGACAGGGTCTTACAC-AAATCAT-A
1 TATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCATCA
* * *
45650049 TA-CGATGCCAATGTCCTAGACATGGTCTTACACGTAATC-TCC
1 TATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCATCA
*
45650091 TATCGATGCCAATGTCCCAAACATGGTCTTACACGAAATCA
1 TATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
45650132 CAACTCGAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 28 0.40
42 8 0.11
43 34 0.49
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (44 bp):
TATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCATCA
Found at i:45653431 original size:31 final size:31
Alignment explanation
Indices: 45653396--45653501 Score: 180
Period size: 31 Copynumber: 3.5 Consensus size: 31
45653386 AATGATATAC
45653396 GGGCGTGTGCGCCCACACGGCCCACACACAT
1 GGGCGTGTGCGCCCACACGGCCCACACACAT
*
45653427 GGGCGTGTGCGCCCACACGGCCCACACACAC
1 GGGCGTGTGCGCCCACACGGCCCACACACAT
45653458 GGGCGTGTGCGCCCACACGGCCCACACACAAT
1 GGGCGTGTGCGCCCACACGGCCCACACAC-AT
45653490 -GGCGTGTG-GCCC
1 GGGCGTGTGCGCCC
45653502 TCCAAAGCTA
Statistics
Matches: 72, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
30 4 0.06
31 67 0.93
32 1 0.01
ACGTcount: A:0.18, C:0.42, G:0.31, T:0.09
Consensus pattern (31 bp):
GGGCGTGTGCGCCCACACGGCCCACACACAT
Found at i:45656227 original size:50 final size:50
Alignment explanation
Indices: 45656152--45656260 Score: 191
Period size: 50 Copynumber: 2.2 Consensus size: 50
45656142 AAGATAATAG
* *
45656152 TATATATATGTATATATTTATCCCAAAACAACATACAGTGATGTTGGCGAA
1 TATA-ATAAGTATATATTTATCCCAAAACAACATACAATGATGTTGGCGAA
45656203 TATAATAAGTATATATTTATCCCAAAACAACATACAATGATGTTGGCGAA
1 TATAATAAGTATATATTTATCCCAAAACAACATACAATGATGTTGGCGAA
45656253 TATAATAA
1 TATAATAA
45656261 TAGTTGAATA
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
50 52 0.93
51 4 0.07
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (50 bp):
TATAATAAGTATATATTTATCCCAAAACAACATACAATGATGTTGGCGAA
Found at i:45664449 original size:54 final size:54
Alignment explanation
Indices: 45664371--45664474 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
45664361 TGTGATCCAA
** *
45664371 GTCAGAGAGTTACACGGGTTGAGACACGGGCTGGGACAT-GGTCGTGTGTCTCAT
1 GTCAGAGAGTTACACGGGCAGAGACACGGGCTGGGAC-TCGATCGTGTGTCTCAT
* * * *
45664425 GTCAGAGAGTTATATGGGCAGAGACATGGGTTGGGACTCGATCGTGTGTC
1 GTCAGAGAGTTACACGGGCAGAGACACGGGCTGGGACTCGATCGTGTGTC
45664475 CCAAATTCGA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.02
54 41 0.98
ACGTcount: A:0.21, C:0.16, G:0.38, T:0.25
Consensus pattern (54 bp):
GTCAGAGAGTTACACGGGCAGAGACACGGGCTGGGACTCGATCGTGTGTCTCAT
Found at i:45675399 original size:25 final size:26
Alignment explanation
Indices: 45675358--45675409 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
45675348 AAGGGAGAAT
*
45675358 ATTAAAAAAATAAATTT-ATTTTAAA
1 ATTAAAAAAATAAATTTAATTTCAAA
*
45675383 ATTAATAAAAA-ATATTTAATTTCAAA
1 ATTAA-AAAAATAAATTTAATTTCAAA
45675409 A
1 A
45675410 AGTGATAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
ATTAAAAAAATAAATTTAATTTCAAA
Found at i:45678348 original size:22 final size:22
Alignment explanation
Indices: 45678290--45678348 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
45678280 GAATGGTATC
45678290 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
* *
45678312 TACAAAATCATATCTCCTAATA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
45678335 TACATATCAAATCT
1 TACAAATCAAATCT
45678349 ACGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 12 0.39
23 14 0.45
24 5 0.16
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.34
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:45686245 original size:256 final size:256
Alignment explanation
Indices: 45685790--45686298 Score: 1009
Period size: 256 Copynumber: 2.0 Consensus size: 256
45685780 TCTTTGGCGC
*
45685790 TGTTGAAGAAGGTGATGTATTCTCGAGGCTGCTGCGTCGGTCAAAGTCAGAACTTGCCACCTCAA
1 TGTTGAAGAAGGTGATGTATTCTCGAGGCTACTGCGTCGGTCAAAGTCAGAACTTGCCACCTCAA
45685855 AGCCGGTTGCCCGATTTTCTCTGCGGCGGTCGCGAATAATCGAGAAGCCATGGATTTGTGAACAA
66 AGCCGGTTGCCCGATTTTCTCTGCGGCGGTCGCGAATAATCGAGAAGCCATGGATTTGTGAACAA
45685920 ATCTACGCGAGAGGCCATTATCATTTTTTCTGTTTATATTTTATTTTCTTTAAGAAAAAGGGTAA
131 ATCTACGCGAGAGGCCATTATCATTTTTTCTGTTTATATTTTATTTTCTTTAAGAAAAAGGGTAA
45685985 ATTTCACATATAGTCACCCAGTCATAAAATATTTTTATTTTAGGCACTAAAAAAATTGCGT
196 ATTTCACATATAGTCACCCAGTCATAAAATATTTTTATTTTAGGCACTAAAAAAATTGCGT
45686046 TGTTGAAGAAGGTGATGTATTCTCGAGGCTACTGCGTCGGTCAAAGTCAGAACTTGCCACCTCAA
1 TGTTGAAGAAGGTGATGTATTCTCGAGGCTACTGCGTCGGTCAAAGTCAGAACTTGCCACCTCAA
45686111 AGCCGGTTGCCCGATTTTCTCTGCGGCGGTCGCGAATAATCGAGAAGCCATGGATTTGTGAACAA
66 AGCCGGTTGCCCGATTTTCTCTGCGGCGGTCGCGAATAATCGAGAAGCCATGGATTTGTGAACAA
45686176 ATCTACGCGAGAGGCCATTATCATTTTTTCTGTTTATATTTTATTTTCTTTAAGAAAAAGGGTAA
131 ATCTACGCGAGAGGCCATTATCATTTTTTCTGTTTATATTTTATTTTCTTTAAGAAAAAGGGTAA
45686241 ATTTCACATATAGTCACCCAGTCATAAAATATTTTTATTTTAGGCACTAAAAAAATTG
196 ATTTCACATATAGTCACCCAGTCATAAAATATTTTTATTTTAGGCACTAAAAAAATTG
45686299 TAACTTAAAT
Statistics
Matches: 252, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
256 252 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (256 bp):
TGTTGAAGAAGGTGATGTATTCTCGAGGCTACTGCGTCGGTCAAAGTCAGAACTTGCCACCTCAA
AGCCGGTTGCCCGATTTTCTCTGCGGCGGTCGCGAATAATCGAGAAGCCATGGATTTGTGAACAA
ATCTACGCGAGAGGCCATTATCATTTTTTCTGTTTATATTTTATTTTCTTTAAGAAAAAGGGTAA
ATTTCACATATAGTCACCCAGTCATAAAATATTTTTATTTTAGGCACTAAAAAAATTGCGT
Found at i:45692867 original size:150 final size:146
Alignment explanation
Indices: 45692592--45692933 Score: 551
Period size: 150 Copynumber: 2.3 Consensus size: 146
45692582 TTGATGTATA
* *
45692592 AGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
* *
45692657 AAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTA
66 AAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
45692722 ATGTGAAATATATATATATG
131 ATGTG--A-A-ATATATATG
45692742 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
*
45692807 AAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT
66 AAAGCCGAATGGCT-AATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT
* *
45692871 AGTGTGAAATATGTATG
130 AATGTGAAATATATATG
* *
45692888 AGATGTGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
45692934 GGCGATGTGT
Statistics
Matches: 182, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
146 52 0.29
147 1 0.01
148 1 0.01
149 1 0.01
150 127 0.70
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (146 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
AAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
ATGTGAAATATATATG
Found at i:45692879 original size:98 final size:98
Alignment explanation
Indices: 45692585--45692930 Score: 527
Period size: 98 Copynumber: 3.5 Consensus size: 98
45692575 GCTGAAATTG
* * *
45692585 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATATG-AA-ATATGTATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
*
45692648 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *
45692683 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATGAGATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATGAGATAT
45692748 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
64 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
45692783 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATATG
*
45692847 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
65 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
45692881 ATGTATGAGATGTGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
45692931 GTAGGCGATG
Statistics
Matches: 228, Mismatches: 14, Indels: 12
0.90 0.06 0.05
Matches are distributed among these distances:
98 135 0.59
99 4 0.02
100 42 0.18
101 3 0.01
102 44 0.19
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (98 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:45692943 original size:48 final size:48
Alignment explanation
Indices: 45692585--45692933 Score: 502
Period size: 48 Copynumber: 7.1 Consensus size: 48
45692575 GCTGAAATTG
* *
45692585 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
45692633 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *
45692683 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-AT
*
45692735 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
45692783 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* *
45692833 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
45692881 ATGTATGAGATGTGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
45692929 ATGTA
1 ATGTA
45692934 GGCGATGTGT
Statistics
Matches: 277, Mismatches: 16, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
47 1 0.00
48 136 0.49
49 7 0.03
50 84 0.30
51 3 0.01
52 46 0.17
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:45700031 original size:27 final size:26
Alignment explanation
Indices: 45699991--45700131 Score: 156
Period size: 27 Copynumber: 5.2 Consensus size: 26
45699981 AGGAAGCGTC
*
45699991 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
45700018 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* * *
45700045 CTGGTGGCTATGCAATGATTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGAT
*
45700072 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* * *
45700099 CTGGTGGCTCTACCACAATATATGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
45700126 CTGGTG
1 CTGGTG
45700132 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 9 0.09
27 85 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:45700128 original size:54 final size:54
Alignment explanation
Indices: 45699991--45700131 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
45699981 AGGAAGCGTC
45699991 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* **
45700045 CTGGTGGCTATGCAATGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
45700099 CTGGTGGCTCTACCACAA-TATATGTATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
45700132 ACTTCGTCAC
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 5 0.06
54 72 0.94
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:45702820 original size:26 final size:26
Alignment explanation
Indices: 45702784--45702837 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
45702774 TGATTCATCG
* * *
45702784 AGCCATATGAAATTATAGAAAGAATC
1 AGCCACATGAAATTAAAGAAAAAATC
45702810 AGCCACATGAAATTAAAGAAAAAATC
1 AGCCACATGAAATTAAAGAAAAAATC
45702836 AG
1 AG
45702838 ACCTGTTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.54, C:0.13, G:0.15, T:0.19
Consensus pattern (26 bp):
AGCCACATGAAATTAAAGAAAAAATC
Found at i:45723853 original size:40 final size:41
Alignment explanation
Indices: 45723798--45723922 Score: 157
Period size: 40 Copynumber: 3.1 Consensus size: 41
45723788 ATCGAACACA
* * *
45723798 CCAAACAAAATCTCATAAAAGCTAATCCAATCGAAACACGT
1 CCAAACAGAAGCTCATAAGAGCTAATCCAATCGAAACACGT
* *
45723839 -CAAGCAGAAGCTCATAAGAGCTTATCCAATCGAAACAC-T
1 CCAAACAGAAGCTCATAAGAGCTAATCCAATCGAAACACGT
* * *
45723878 CCAAACAGAAGCGCATAAGAGCTGATCCAATCGGAACACG-
1 CCAAACAGAAGCTCATAAGAGCTAATCCAATCGAAACACGT
45723918 CCAAA
1 CCAAA
45723923 TAAAGAGCAT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.44, C:0.27, G:0.14, T:0.14
Consensus pattern (41 bp):
CCAAACAGAAGCTCATAAGAGCTAATCCAATCGAAACACGT
Found at i:45728434 original size:11 final size:11
Alignment explanation
Indices: 45728420--45728461 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
45728410 CCAAGAATAT
45728420 TCCACAAAGGC
1 TCCACAAAGGC
45728431 TCCACAGAAGG-
1 TCCACA-AAGGC
45728442 TGCCACAAAGGC
1 T-CCACAAAGGC
*
45728454 TTCACAAA
1 TCCACAAA
45728462 ATATGCCACA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.38, C:0.31, G:0.19, T:0.12
Consensus pattern (11 bp):
TCCACAAAGGC
Found at i:45728447 original size:23 final size:23
Alignment explanation
Indices: 45728398--45728472 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 23
45728388 TATAGAATAA
* *
45728398 GCCATAAAGGCTCCA-AGAATAT
1 GCCACAAAGGCTCCACAGAAGAT
* *
45728420 TCCACAAAGGCTCCACAGAAGGT
1 GCCACAAAGGCTCCACAGAAGAT
* * *
45728443 GCCACAAAGGCTTCACAAAATAT
1 GCCACAAAGGCTCCACAGAAGAT
45728466 GCCACAA
1 GCCACAA
45728473 CAGCTTTACA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
22 13 0.30
23 30 0.70
ACGTcount: A:0.40, C:0.28, G:0.17, T:0.15
Consensus pattern (23 bp):
GCCACAAAGGCTCCACAGAAGAT
Found at i:45734124 original size:42 final size:42
Alignment explanation
Indices: 45734076--45734173 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
45734066 GAGGAGCACA
* * *
45734076 ATCACTTAAGCTCACATGGGGAGGTTCGCTGATACAAAGGTT
1 ATCACTTAAGCTCACACGGGGAGCTTCGCTGATACAAAGATT
* ** * *
45734118 GTCACTTAAGCTCATGCGGGGAGCTTCGTTGATACACAGATT
1 ATCACTTAAGCTCACACGGGGAGCTTCGCTGATACAAAGATT
45734160 ATCACTTAAGCTCA
1 ATCACTTAAGCTCA
45734174 TGAGGGGAGC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (42 bp):
ATCACTTAAGCTCACACGGGGAGCTTCGCTGATACAAAGATT
Found at i:45734174 original size:42 final size:42
Alignment explanation
Indices: 45734076--45734356 Score: 230
Period size: 43 Copynumber: 6.6 Consensus size: 42
45734066 GAGGAGCACA
* * * *
45734076 ATCACTTAAGCTCA-CATGGGGAGGTTCGCTGATACAAAGGTT
1 ATCACTTAAGCTCATGA-GGGGAGCTTCGCTGATACACAGATT
* * *
45734118 GTCACTTAAGCTCATGCGGGGAGCTTCGTTGATACACAGATT
1 ATCACTTAAGCTCATGAGGGGAGCTTCGCTGATACACAGATT
** * *
45734160 ATCACTTAAGCTCATGAGGGGAGCTTTACTGGTTACACTA-TTT
1 ATCACTTAAGCTCATGAGGGGAGCTTCGCT-GATACAC-AGATT
* *
45734203 ATCACTTAAGCTCATGA-GAGAGCTTCACTGATGACACA-ACTT
1 ATCACTTAAGCTCATGAGGGGAGCTTCGCTGAT-ACACAGA-TT
* * *
45734245 ATCACTTAAGCTTAGGAGGGGAGCTTCGCTGATTACACAGCTT
1 ATCACTTAAGCTCATGAGGGGAGCTTCGCTGA-TACACAGATT
* * * ** * *
45734288 ATCATTTAAGTTCATGAAGGGAATTTTGCTAATTACACA-ACTT
1 ATCACTTAAGCTCATGAGGGGAGCTTCGCTGA-TACACAGA-TT
* *
45734331 ATCACTTAAACTCATGAGGAGAGCTT
1 ATCACTTAAGCTCATGAGGGGAGCTT
45734357 TTCTTATTAC
Statistics
Matches: 190, Mismatches: 40, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
41 3 0.02
42 90 0.47
43 95 0.50
44 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (42 bp):
ATCACTTAAGCTCATGAGGGGAGCTTCGCTGATACACAGATT
Found at i:45734249 original size:85 final size:85
Alignment explanation
Indices: 45734076--45734375 Score: 259
Period size: 85 Copynumber: 3.5 Consensus size: 85
45734066 GAGGAGCACA
* * ** * * * **
45734076 ATCACTTAAGCTCA-CATGGGGAGGTTCGCTGA-TACAAAGGTTGTCACTTAAGCTCATGCGGGG
1 ATCACTTAAGCTCATGA-GGGGAGCTTTACTGATTACACAGCTTATCACTTAAGCTCATGAAGGG
*
45734139 AGCTTCGTTGATACACAGA-TT
65 AGCTTCGCTGATACACA-ACTT
* * *
45734160 ATCACTTAAGCTCATGAGGGGAGCTTTACTGGTTACACTA-TTTATCACTTAAGCTCATG-AGAG
1 ATCACTTAAGCTCATGAGGGGAGCTTTACTGATTACAC-AGCTTATCACTTAAGCTCATGAAGGG
*
45734223 AGCTTCACTGATGACACAACTT
65 AGCTTCGCTGAT-ACACAACTT
* * ** * *
45734245 ATCACTTAAGCTTAGGAGGGGAGCTTCGCTGATTACACAGCTTATCATTTAAGTTCATGAAGGGA
1 ATCACTTAAGCTCATGAGGGGAGCTTTACTGATTACACAGCTTATCACTTAAGCTCATGAAGGGA
** * *
45734310 ATTTTGCTAATTACACAACTT
66 GCTTCGCTGA-TACACAACTT
* * * * *
45734331 ATCACTTAAACTCATGAGGAGAGCTTTTCTTATTACACAACTTAT
1 ATCACTTAAGCTCATGAGGGGAGCTTTACTGATTACACAGCTTAT
45734376 AAAACTGTTT
Statistics
Matches: 174, Mismatches: 34, Indels: 14
0.78 0.15 0.06
Matches are distributed among these distances:
84 39 0.22
85 78 0.45
86 56 0.32
87 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (85 bp):
ATCACTTAAGCTCATGAGGGGAGCTTTACTGATTACACAGCTTATCACTTAAGCTCATGAAGGGA
GCTTCGCTGATACACAACTT
Found at i:45737343 original size:23 final size:22
Alignment explanation
Indices: 45737292--45737351 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
45737282 TTCTATCAAG
45737292 TTTGTTTTC-TCTTTC-TCTTC
1 TTTGTTTTCTTCTTTCTTCTTC
* *
45737312 TTGGATTTCTTCTTTCTTCTTCC
1 TTTGTTTTCTTCTTTCTTCTT-C
*
45737335 TTTGTTTTCTCCTTTCT
1 TTTGTTTTCTTCTTTCT
45737352 AGTTTCCTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 7 0.22
21 6 0.19
22 4 0.12
23 15 0.47
ACGTcount: A:0.02, C:0.25, G:0.07, T:0.67
Consensus pattern (22 bp):
TTTGTTTTCTTCTTTCTTCTTC
Found at i:45737779 original size:49 final size:49
Alignment explanation
Indices: 45737719--45737861 Score: 196
Period size: 49 Copynumber: 2.9 Consensus size: 49
45737709 TCAAGGTAGT
* *
45737719 TTTATTGTACTATATTTTTCAAAATAACAACATCATGGATGTAGGCAGC
1 TTTATTGTACTATATTTTTCAGAATAACAACACCATGGATGTAGGCAGC
* * **
45737768 TTTATTATACTATATTTTTTAGAATAACAGGACCATGGATGTAGGCAGC
1 TTTATTGTACTATATTTTTCAGAATAACAACACCATGGATGTAGGCAGC
* ** *
45737817 TTTATTGTACTATATTTTGCAGAATAACTGCACCGTGGATGTAGG
1 TTTATTGTACTATATTTTTCAGAATAACAACACCATGGATGTAGG
45737862 TAGACTTCTC
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 82 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.37
Consensus pattern (49 bp):
TTTATTGTACTATATTTTTCAGAATAACAACACCATGGATGTAGGCAGC
Found at i:45738090 original size:24 final size:24
Alignment explanation
Indices: 45738063--45738155 Score: 134
Period size: 24 Copynumber: 3.9 Consensus size: 24
45738053 TTTCTAGAAG
*
45738063 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
**
45738087 ATTTATTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
*
45738111 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGTATAATAT
45738135 ATTT-GACATTTATTAGTATAA
1 ATTTAG-CATTTATTAGTATAA
45738156 AAATATTTGT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
23 1 0.02
24 62 0.98
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.52
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTATAATAT
Found at i:45740906 original size:85 final size:86
Alignment explanation
Indices: 45740812--45741001 Score: 265
Period size: 85 Copynumber: 2.2 Consensus size: 86
45740802 ACAAAACTTC
* *
45740812 GCGGCGTTTTTTATACAAGCGCCGCTAAAGACCAGGACCTTTAGCGACG-CTCTTAAAAAAACGC
1 GCGGCGTTTTTTATAAAAGCGCCGCCAAAGACCAGGACCTTTAGCGACGTCTCTTAAAAAAACGC
*
45740876 CGCCAAAGACCAGGACTTTTA
66 CGCCAAAGACCAGGACCTTTA
* * * * * *
45740897 GCGGCGTTTTTTATAAAAGCGCCGCCAAAGACCAGGACTTTTAGCGGCGTTTTTTATAAAAGCGC
1 GCGGCGTTTTTTATAAAAGCGCCGCCAAAGACCAGGACCTTTAGCGACGTCTCTTAAAAAAACGC
*
45740962 CGCTAAAGACCAGGACCTTTA
66 CGCCAAAGACCAGGACCTTTA
*
45740983 GCGGCGCTTTTATATAAAA
1 GCGGCG-TTTTTTATAAAA
45741002 AACGCCACTA
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 45 0.49
86 36 0.39
87 11 0.12
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (86 bp):
GCGGCGTTTTTTATAAAAGCGCCGCCAAAGACCAGGACCTTTAGCGACGTCTCTTAAAAAAACGC
CGCCAAAGACCAGGACCTTTA
Found at i:45741033 original size:45 final size:44
Alignment explanation
Indices: 45740812--45741186 Score: 372
Period size: 43 Copynumber: 8.6 Consensus size: 44
45740802 ACAAAACTTC
* * * * *
45740812 GCGGCGTTTTTTAT-ACAAGCGCCGCTAAAGACCAGGACCTTTA
1 GCGGCGCTTTTTATAAAAAACGCCGCTATAGACCAGGACTTTTA
* * * *
45740855 GCGACGC-TCTTA-AAAAAACGCCGCCAAAGACCAGGACTTTTA
1 GCGGCGCTTTTTATAAAAAACGCCGCTATAGACCAGGACTTTTA
* * * *
45740897 GCGGCGTTTTTTAT-AAAAGCGCCGCCAAAGACCAGGACTTTTA
1 GCGGCGCTTTTTATAAAAAACGCCGCTATAGACCAGGACTTTTA
* * * *
45740940 GCGGCGTTTTTTAT-AAAAGCGCCGCTAAAGACCAGGACCTTTA
1 GCGGCGCTTTTTATAAAAAACGCCGCTATAGACCAGGACTTTTA
* * *
45740983 GCGGCGCTTTTATATAAAAAACGCCACTATAGACCTGTACTTTTA
1 GCGGCGCTTTT-TATAAAAAACGCCGCTATAGACCAGGACTTTTA
* * * *
45741028 ACGGCGCTTTTGTA-AAAAAATGCCTCTATAGACCAAGAAC-TTTA
1 GCGGCGCTTTT-TATAAAAAACGCCGCTATAGACC-AGGACTTTTA
* *
45741072 GCGGCGC-TTTTATAAAAAACGCCGCTATAGACCTGTACTTTTA
1 GCGGCGCTTTTTATAAAAAACGCCGCTATAGACCAGGACTTTTA
* * *
45741115 GCGGCGCTTTTATATAAAAAACGCCGTTATAGACCTGTACTTTTA
1 GCGGCGCTTTT-TATAAAAAACGCCGCTATAGACCAGGACTTTTA
* *
45741160 GCGGCTC-TTTTGTAAAAAACGCCGCTA
1 GCGGCGCTTTTTATAAAAAACGCCGCTA
45741187 ATTTGCCCAG
Statistics
Matches: 287, Mismatches: 35, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
42 39 0.14
43 135 0.47
44 37 0.13
45 76 0.26
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (44 bp):
GCGGCGCTTTTTATAAAAAACGCCGCTATAGACCAGGACTTTTA
Found at i:45741115 original size:132 final size:132
Alignment explanation
Indices: 45740812--45741178 Score: 413
Period size: 132 Copynumber: 2.8 Consensus size: 132
45740802 ACAAAACTTC
* * * * *
45740812 GCGGCGTTTTTTATACAAGCGCCGCTAAAGACCAGGACCTTTAGCGACGC-TCT-TA-AAAAAAC
1 GCGGCGTTTTATATAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTATATAAAAAAC
* * * * * * * * ** * * * *
45740874 GCCGCCAAAGACCAGGACTTTTAGCGGCG-TTTTTTATAAAAGCGCCGCCAAAGACC-AGGACTT
66 GCCACTATAGACCTGTACTTTTAACGGCGCTTTTGTAAAAAAATGCCTCTATAGACCAAGAAC-T
45740937 TTA
130 TTA
* *
45740940 GCGGCGTTTTTTATAAAAGCGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTATATAAAAAAC
1 GCGGCGTTTTATATAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTATATAAAAAAC
45741005 GCCACTATAGACCTGTACTTTTAACGGCGCTTTTGTAAAAAAATGCCTCTATAGACCAAGAACTT
66 GCCACTATAGACCTGTACTTTTAACGGCGCTTTTGTAAAAAAATGCCTCTATAGACCAAGAACTT
45741070 TA
131 TA
* * * *
45741072 GCGGCGCTTTTATA-AAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTATATAAAAAA
1 GCGGCG-TTTTATATAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTATATAAAAAA
** * *
45741136 CGCCGTTATAGACCTGTACTTTTAGCGGCTCTTTTGTAAAAAA
65 CGCCACTATAGACCTGTACTTTTAACGGCGCTTTTGTAAAAAA
45741179 CGCCGCTAAT
Statistics
Matches: 206, Mismatches: 27, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
128 48 0.23
129 2 0.01
130 2 0.01
131 30 0.15
132 114 0.55
133 10 0.05
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (132 bp):
GCGGCGTTTTATATAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTATATAAAAAAC
GCCACTATAGACCTGTACTTTTAACGGCGCTTTTGTAAAAAAATGCCTCTATAGACCAAGAACTT
TA
Found at i:45742097 original size:18 final size:18
Alignment explanation
Indices: 45742065--45742102 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
45742055 TACCATATAG
45742065 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
45742084 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
45742101 TA
1 TA
45742103 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:45749085 original size:133 final size:133
Alignment explanation
Indices: 45748847--45749098 Score: 477
Period size: 133 Copynumber: 1.9 Consensus size: 133
45748837 GAATTCAACA
*
45748847 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAACAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
45748912 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
45748977 ATT
131 ATT
* *
45748980 ATATAAAACGTGAGCAATAAGACAACATTAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAACAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
45749045 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
45749099 GGAATCACCA
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 116 1.00
ACGTcount: A:0.52, C:0.18, G:0.10, T:0.20
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAACAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:45752444 original size:21 final size:22
Alignment explanation
Indices: 45752396--45752447 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
45752386 CTCTAAACCC
45752396 CTAAACCCCTAAACCACAAACA
1 CTAAACCCCTAAACCACAAACA
* * *
45752418 CAAAACCCCT-AACCCCAAACT
1 CTAAACCCCTAAACCACAAACA
*
45752439 TTAAACCCC
1 CTAAACCCC
45752448 AAAATCAATC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (22 bp):
CTAAACCCCTAAACCACAAACA
Found at i:45752942 original size:36 final size:38
Alignment explanation
Indices: 45752901--45752976 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 38
45752891 CTTCAATTAC
* *
45752901 TAGTTAACTCCTAAACC-G-TAAATCTTAAACCATATA
1 TAGTTAACTCATAAACCTGCTAAACCTTAAACCATATA
45752937 TAGTTAACTCATAAACCTGCTTAAACCTTAAACCATATA
1 TAGTTAACTCATAAACCTGC-TAAACCTTAAACCATATA
45752976 T
1 T
45752977 CTTAAACTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
36 16 0.46
37 1 0.03
39 18 0.51
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (38 bp):
TAGTTAACTCATAAACCTGCTAAACCTTAAACCATATA
Found at i:45755039 original size:22 final size:22
Alignment explanation
Indices: 45755011--45755132 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
45755001 TTCCACATCC
45755011 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
45755033 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
45755057 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
45755080 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
45755104 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
45755127 ATCACA
1 ATCACA
45755133 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:45755055 original size:47 final size:47
Alignment explanation
Indices: 45754983--45755269 Score: 355
Period size: 47 Copynumber: 6.3 Consensus size: 47
45754973 CCCTTCGAGA
* * *
45754983 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
45755030 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
45755077 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
45755124 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
45755171 CTTATCACACATACACATGTTCACA-T--T--CA-T----ATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
45755208 CTTATCACACATACACATGTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
45755255 CCTATCACATATATA
1 CTTATCACATATATA
45755270 TACTTGTACA
Statistics
Matches: 216, Mismatches: 13, Indels: 22
0.86 0.05 0.09
Matches are distributed among these distances:
37 32 0.15
38 1 0.00
40 1 0.00
41 1 0.00
42 4 0.02
43 1 0.00
44 1 0.00
46 2 0.01
47 173 0.80
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:45755206 original size:37 final size:37
Alignment explanation
Indices: 45755164--45755237 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
45755154 CACATTGGCC
45755164 ATTCGGCCTTATCACACATACACATGTTCACATTCAT
1 ATTCGGCCTTATCACACATACACATGTTCACATTCAT
45755201 ATTCGGCCTTATCACACATACACATGTTCACATTCAT
1 ATTCGGCCTTATCACACATACACATGTTCACATTCAT
45755238 CACATTGGCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (37 bp):
ATTCGGCCTTATCACACATACACATGTTCACATTCAT
Found at i:45757806 original size:41 final size:41
Alignment explanation
Indices: 45757749--45758195 Score: 515
Period size: 41 Copynumber: 11.0 Consensus size: 41
45757739 GTTCTATGAC
*
45757749 TTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
45757790 TTTTAGCGGCGTTTTACCGAAAACGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
45757831 TTTTAGCGG-GTTTTACCGAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
**
45757871 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTATT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * * *
45757912 TTTTAGTGGCATTTTACCGAAAGCGCAGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * **
45757953 TTTTAGCGGCATTTTACCCAAAGCGCCGCTAATGCTCTATT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* *
45757994 TTTTAGCAGCGTTTTACCCG-AAGCACCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTA-CCGAAAGCGCCGCTAATGCTCTGGT
* * *
45758035 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTAGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * * * *
45758076 TTTTAGCGGTGTTTTACCTAAAGCGTCGCTAATGATCT-AT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * *** * **
45758116 TTTTAGAGGCATTTTAGTAAAAAACGCCGCTGTTGCTCT-GT
1 TTTTAGCGGCGTTTTA-CCGAAAGCGCCGCTAATGCTCTGGT
* * ** * *
45758157 TTTTAGCAGCGTTTTTCTTAAAACGCCGCTATTGCTCTG
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTG
45758196 TACTTTAAAA
Statistics
Matches: 351, Mismatches: 50, Indels: 10
0.85 0.12 0.02
Matches are distributed among these distances:
40 72 0.21
41 277 0.79
42 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
Found at i:45758522 original size:121 final size:121
Alignment explanation
Indices: 45758308--45758550 Score: 398
Period size: 121 Copynumber: 2.0 Consensus size: 121
45758298 CACACACGGT
* *
45758308 CTAGACACATGCCAGTGTCTACCCGTATGGACAAAAATAAGGCTCTTTACCAAGCCATTTGCCAC
1 CTAGACACAAGCCAGTGTCTACCCGTATGGACAAAAATAAGGCTATTTACCAAGCCATTTGCCAC
* *
45758373 CTTTACTCGCACCAACCTACACCACAACAAGCAACACCAATCCAAGCATTTATACA
66 ATTTACTCGCACCAACCTACACAACAACAAGCAACACCAATCCAAGCATTTATACA
* *
45758429 CTAGACACAAGCCCGTGTCTACCCGTGTGGA-AAAAATAAGGCTATTTACCAAGCCATTTTGCCA
1 CTAGACACAAGCCAGTGTCTACCCGTATGGACAAAAATAAGGCTATTTACCAAGCCA-TTTGCCA
* *
45758493 CATTTACTTGCTCCAACCTACACAACAACAAGCAACACCAATCCAAGCATTTATACA
65 CATTTACTCGCACCAACCTACACAACAACAAGCAACACCAATCCAAGCATTTATACA
45758550 C
1 C
45758551 AACCAATTCA
Statistics
Matches: 113, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
120 24 0.21
121 89 0.79
ACGTcount: A:0.35, C:0.32, G:0.12, T:0.21
Consensus pattern (121 bp):
CTAGACACAAGCCAGTGTCTACCCGTATGGACAAAAATAAGGCTATTTACCAAGCCATTTGCCAC
ATTTACTCGCACCAACCTACACAACAACAAGCAACACCAATCCAAGCATTTATACA
Found at i:45758568 original size:15 final size:15
Alignment explanation
Indices: 45758548--45758581 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
45758538 AGCATTTATA
*
45758548 CACAACCAATTCAAC
1 CACAACCAAGTCAAC
*
45758563 CACAACCAAGTCATC
1 CACAACCAAGTCAAC
45758578 CACA
1 CACA
45758582 CATCAATTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.41, G:0.03, T:0.12
Consensus pattern (15 bp):
CACAACCAAGTCAAC
Found at i:45759176 original size:20 final size:20
Alignment explanation
Indices: 45759148--45759191 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
45759138 TACCAACTTG
*
45759148 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
* *
45759168 CAACATACCATAGTTTTTCA
1 CAACATACCATAATCTTTCA
45759188 CAAC
1 CAAC
45759192 TTAAACATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.30, G:0.02, T:0.32
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:45759398 original size:42 final size:42
Alignment explanation
Indices: 45759277--45759398 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
45759267 TACCATACCA
* **
45759277 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATATCG
* * *
45759319 ATGCCAATAACCCAGCTATGGTCTTA-AAAAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAAGAAA-TCTCATATCG
* *
45759362 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCA
45759399 ACTAACCCTA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 30 0.45
43 36 0.55
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATATCG
Found at i:45770011 original size:18 final size:18
Alignment explanation
Indices: 45769990--45770029 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
45769980 AAAGTTTTCA
* *
45769990 ATTTAAATTTAGTTTTTT
1 ATTTAAATTTACTTTTTG
*
45770008 ATTTAATTTTACTTTTTG
1 ATTTAAATTTACTTTTTG
45770026 ATTT
1 ATTT
45770030 TATAAAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.68
Consensus pattern (18 bp):
ATTTAAATTTACTTTTTG
Found at i:45770413 original size:16 final size:16
Alignment explanation
Indices: 45770392--45770426 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
45770382 CTATCTTAAC
*
45770392 AACATGATGCCTAAAA
1 AACATGATGACTAAAA
*
45770408 AACATGATGATTAAAA
1 AACATGATGACTAAAA
45770424 AAC
1 AAC
45770427 CTATTTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.11, T:0.20
Consensus pattern (16 bp):
AACATGATGACTAAAA
Found at i:45770737 original size:21 final size:21
Alignment explanation
Indices: 45770694--45770733 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45770684 GGAGAGAGCA
*
45770694 AGAAAACAATAAATGATAAAG
1 AGAAAACAATAAATAATAAAG
*
45770715 AGAAAATAATAAA-AATAAA
1 AGAAAACAATAAATAATAAA
45770734 AGAGGTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.72, C:0.03, G:0.10, T:0.15
Consensus pattern (21 bp):
AGAAAACAATAAATAATAAAG
Found at i:45772537 original size:50 final size:50
Alignment explanation
Indices: 45772483--45772617 Score: 180
Period size: 50 Copynumber: 2.7 Consensus size: 50
45772473 ATGAGATTTT
* *
45772483 ATGTAAGACCATATTTGGGACATGACATTGACATTGATATATGTGATCCC
1 ATGTAAGACCATATTTGGGACATGACATTGACATCGATATATGTGAACCC
* * * * *
45772533 ATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGTGAACCT
1 ATGTAAGACCATATTTGGGACATGACATTGACATCGATATATGTGAACCC
* * *
45772583 ATGTAAGACCGTATTTGGGATATGGCATTGACATC
1 ATGTAAGACCATATTTGGGACATGACATTGACATC
45772618 TTACTATGTG
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 72 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (50 bp):
ATGTAAGACCATATTTGGGACATGACATTGACATCGATATATGTGAACCC
Found at i:45774553 original size:188 final size:188
Alignment explanation
Indices: 45774236--45774607 Score: 719
Period size: 188 Copynumber: 2.0 Consensus size: 188
45774226 GTCACAAGGG
45774236 GAATGTTACTAAAAAAGTTATGTTTTATCCAAAAATCTTTCTTAGGGTTTGAAGAATATTTTGTT
1 GAATGTTACTAAAAAAGTTATGTTTTATCCAAAAATCTTTCTTAGGGTTTGAAGAATATTTTGTT
45774301 TTAAGTTAAAGTGAACGGAAGCTGTGCACCAGGTAGGAAGCTAAAAAAGAGGAGGTGAGTCTGTT
66 TTAAGTTAAAGTGAACGGAAGCTGTGCACCAGGTAGGAAGCTAAAAAAGAGGAGGTGAGTCTGTT
45774366 GGACTGCTTAAGTACCAAGCTCTTCACGGATCCAATCCTAGACATGCACACATCTTGT
131 GGACTGCTTAAGTACCAAGCTCTTCACGGATCCAATCCTAGACATGCACACATCTTGT
*
45774424 GAATGTTACTAAAGAAGTTATGTTTTATCCAAAAATCTTTCTTAGGGTTTGAAGAATATTTTGTT
1 GAATGTTACTAAAAAAGTTATGTTTTATCCAAAAATCTTTCTTAGGGTTTGAAGAATATTTTGTT
45774489 TTAAGTTAAAGTGAACGGAAGCTGTGCACCAGGTAGGAAGCTAGAAAAA-AGGAGGTGAGTCTGT
66 TTAAGTTAAAGTGAACGGAAGCTGTGCACCAGGTAGGAAGCTA-AAAAAGAGGAGGTGAGTCTGT
45774553 TGGACTGCTTAAGTACCAAGCTCTTCACGGATCCAATCCTAGACATGCACACATC
130 TGGACTGCTTAAGTACCAAGCTCTTCACGGATCCAATCCTAGACATGCACACATC
45774608 CATTGCCACA
Statistics
Matches: 182, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
188 177 0.97
189 5 0.03
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (188 bp):
GAATGTTACTAAAAAAGTTATGTTTTATCCAAAAATCTTTCTTAGGGTTTGAAGAATATTTTGTT
TTAAGTTAAAGTGAACGGAAGCTGTGCACCAGGTAGGAAGCTAAAAAAGAGGAGGTGAGTCTGTT
GGACTGCTTAAGTACCAAGCTCTTCACGGATCCAATCCTAGACATGCACACATCTTGT
Found at i:45775493 original size:27 final size:26
Alignment explanation
Indices: 45775437--45775493 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
45775427 CAACCTTAAC
* *
45775437 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
45775463 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
45775490 CCTA
1 CCTA
45775494 TAAAGGTGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:45782660 original size:27 final size:26
Alignment explanation
Indices: 45782627--45782742 Score: 99
Period size: 27 Copynumber: 4.3 Consensus size: 26
45782617 CTGCCAGAAT
* *
45782627 AGATATTGTGATAGAGTCACCAAATAC
1 AGATATTGTGACAGAGCCACCAAA-AC
* *
45782654 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGACAGAGCCACCAAAAC
* * *
45782680 AGATATTTGTGGCATAGCCACCAGAAAT
1 AGATA-TTGTGACAGAGCCACCA-AAAC
*
45782708 AGATATTTGTGGCATG-GCCACCAGAAAC
1 AGATA-TTGTGACA-GAGCCACCA-AAAC
45782736 AGATATT
1 AGATATT
45782743 TGTAGCATGG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
26 7 0.09
27 38 0.49
28 32 0.42
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.23
Consensus pattern (26 bp):
AGATATTGTGACAGAGCCACCAAAAC
Found at i:45782720 original size:28 final size:28
Alignment explanation
Indices: 45782644--45782758 Score: 155
Period size: 28 Copynumber: 4.2 Consensus size: 28
45782634 GTGATAGAGT
*
45782644 CACCA-AATACAGATA-TTGTGGCAGAGC
1 CACCAGAA-ACAGATATTTGTGGCATAGC
45782671 CACCAG-AACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
* *
45782698 CACCAGAAATAGATATTTGTGGCATGGC
1 CACCAGAAACAGATATTTGTGGCATAGC
* *
45782726 CACCAGAAACAGATATTTGTAGCATGGC
1 CACCAGAAACAGATATTTGTGGCATAGC
45782754 CACCA
1 CACCA
45782759 AAATGCTTCC
Statistics
Matches: 80, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 7 0.09
27 23 0.29
28 50 0.62
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.21
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCATAGC
Found at i:45782920 original size:26 final size:26
Alignment explanation
Indices: 45782863--45782925 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
45782853 CAAAATCAAC
*
45782863 CCTAGGGGTATAACGGTCACTTTACA
1 CCTAGGGGTATAACGGTCAATTTACA
* *
45782889 CCTAGGGGTATAATGGT-AATTTCATA
1 CCTAGGGGTATAACGGTCAATTT-ACA
*
45782915 CTTAGGGGTAT
1 CCTAGGGGTAT
45782926 TTTAGTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 4 0.12
26 28 0.88
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CCTAGGGGTATAACGGTCAATTTACA
Found at i:45790711 original size:18 final size:18
Alignment explanation
Indices: 45790688--45790722 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
45790678 ATAAGTTTTA
45790688 AAAGTAAAAACGAAAAAT
1 AAAGTAAAAACGAAAAAT
*
45790706 AAAGTAAAACCGAAAAA
1 AAAGTAAAAACGAAAAA
45790723 AGAGAGTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.09, G:0.11, T:0.09
Consensus pattern (18 bp):
AAAGTAAAAACGAAAAAT
Found at i:45794850 original size:140 final size:138
Alignment explanation
Indices: 45794585--45794871 Score: 303
Period size: 140 Copynumber: 2.0 Consensus size: 138
45794575 GATAAAATGA
* * *
45794585 TTTTCCTTGTAAAAGTCCAAGTAATTCCCTACAAAACCAAAAGTTTTTCCCTTTTACTAGAAAAA
1 TTTTTCTTGTAAAAATCCAAATAATTCCCTACAAAACCAAAAGTTTTTCCCTTTTACTAGAAAAA
* *
45794650 AACTAAAATTAATTTTGAAAAGAGAAAAAATAAAGGAAATTAACGAGTTAAATAA-TTTTTCCTA
66 AACTAAAATTAATTTTGAAAAGAGAAAAAATAAA-GAAATT-A-GAGTAAAATAAGTTTTCCCTA
*
45794714 TAAAACCCAAT
128 TAAAACCCAAG
** ** * * * **
45794725 TTTTTCTTGTAAAAATCCAAATAATTCCCTGTAAAACCCTAAGTTTTTCTCTTTTATTGGAGGAA
1 TTTTTCTTGTAAAAATCCAAATAATTCCCTACAAAACCAAAAGTTTTTCCCTTTTACTAGAAAAA
* *
45794790 AACTAAAATTAATTTTGCAAAAGGGGAAAAAATTAA-AAA-T-GATGTAAAAACCTAAGTTTTCC
66 AACTAAAATTAATTTTG-AAAA-GAGAAAAAATAAAGAAATTAGA-GT-AAAA--TAAGTTTTCC
*
45794852 CTATAAAACTCAAG
125 CTATAAAACCCAAG
45794866 TTTTTC
1 TTTTTC
45794872 CTTTTTATTG
Statistics
Matches: 122, Mismatches: 18, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
136 2 0.02
137 2 0.02
138 3 0.02
139 1 0.01
140 76 0.62
141 27 0.22
142 11 0.09
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.33
Consensus pattern (138 bp):
TTTTTCTTGTAAAAATCCAAATAATTCCCTACAAAACCAAAAGTTTTTCCCTTTTACTAGAAAAA
AACTAAAATTAATTTTGAAAAGAGAAAAAATAAAGAAATTAGAGTAAAATAAGTTTTCCCTATAA
AACCCAAG
Found at i:45804319 original size:40 final size:40
Alignment explanation
Indices: 45804235--45804418 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
45804225 TTGAATGCTG
* * * *
45804235 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
45804274 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
45804315 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
45804355 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
45804395 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
45804419 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:45804372 original size:80 final size:81
Alignment explanation
Indices: 45804235--45804415 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
45804225 TTGAATGCTG
* * *
45804235 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
45804299 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
45804315 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
45804376 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
45804395 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
45804416 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:45804439 original size:39 final size:38
Alignment explanation
Indices: 45804316--45804465 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
45804306 GTTATTAATT
* ** * *
45804316 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
45804356 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
45804395 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
45804435 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
45804466 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:45812165 original size:40 final size:40
Alignment explanation
Indices: 45812081--45812264 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
45812071 TTGAATGCTG
* * * *
45812081 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
45812120 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
45812161 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
45812201 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
45812241 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
45812265 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:45812218 original size:80 final size:81
Alignment explanation
Indices: 45812081--45812261 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
45812071 TTGAATGCTG
* * *
45812081 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
45812145 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
45812161 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
45812222 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
45812241 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
45812262 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:45812285 original size:39 final size:38
Alignment explanation
Indices: 45812162--45812311 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
45812152 GTTATTAATT
* ** * *
45812162 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
45812202 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
45812241 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
45812281 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
45812312 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:45845366 original size:14 final size:14
Alignment explanation
Indices: 45845349--45845378 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
45845339 ACTATGATAG
45845349 TATGTATATGGAAT
1 TATGTATATGGAAT
45845363 TATGTATATGGAAT
1 TATGTATATGGAAT
45845377 TA
1 TA
45845379 AGTAATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (14 bp):
TATGTATATGGAAT
Found at i:45853952 original size:6 final size:6
Alignment explanation
Indices: 45853935--45853981 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
45853925 TTTGAACTAA
** *
45853935 GTTTTAG GTTTTG GTTTT- GTTTTG GACTTG GTTTTG GTTTTT GTTTT
1 GTTTT-G GTTTTG GTTTTG GTTTTG GTTTTG GTTTTG GTTTTG GTTTT
45853982 TCATCGGTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
5 5 0.15
6 24 0.71
7 5 0.15
ACGTcount: A:0.04, C:0.02, G:0.28, T:0.66
Consensus pattern (6 bp):
GTTTTG
Found at i:45853958 original size:30 final size:29
Alignment explanation
Indices: 45853924--45853981 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
45853914 GACTTTTGAT
45853924 TTTTGAACTAAGTTTTAGGTTTTGGTTTTG
1 TTTTGAACTAAGTTTT-GGTTTTGGTTTTG
* ** *
45853954 TTTTGGACTTGGTTTTGGTTTTTGTTTT
1 TTTTGAACTAAGTTTTGGTTTTGGTTTT
45853982 TCATCGGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.10, C:0.03, G:0.24, T:0.62
Consensus pattern (29 bp):
TTTTGAACTAAGTTTTGGTTTTGGTTTTG
Found at i:45854661 original size:66 final size:70
Alignment explanation
Indices: 45854590--45854719 Score: 173
Period size: 71 Copynumber: 1.9 Consensus size: 70
45854580 GATTTAATAT
45854590 TTAATTTAATTTAAT-ACTTATCTTAATAG-T-AT-TT-TA-TAAATTTAATATTAAAGTGATTA
1 TTAATTTAATTTAATGACTTATCTT-ATAGATAATATTCTACT-AATTTAATATTAAAGTGATTA
45854649 TCTTATC
64 TCTTATC
**
45854656 TTAATTTAATTTAATGTTTTATCTTATAGATAAATATTCTACTAATTTAATATTAAAGTGATTA
1 TTAATTTAATTTAATGACTTATCTTATAGAT-AATATTCTACTAATTTAATATTAAAGTGATTA
45854720 AGTTTAATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
66 19 0.35
67 8 0.15
69 2 0.04
70 2 0.04
71 23 0.42
72 1 0.02
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (70 bp):
TTAATTTAATTTAATGACTTATCTTATAGATAATATTCTACTAATTTAATATTAAAGTGATTATC
TTATC
Found at i:45855694 original size:15 final size:14
Alignment explanation
Indices: 45855658--45855700 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
45855648 GAGTAGCACG
45855658 TTTTTTTTTTCCT-
1 TTTTTTTTTTCCTC
*
45855671 TTTTCTTTTTCCTC
1 TTTTTTTTTTCCTC
*
45855685 TTCTTTTTTTTTCTC
1 TT-TTTTTTTTCCTC
45855700 T
1 T
45855701 CTGTAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 12 0.48
14 2 0.08
15 11 0.44
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTTTTTTCCTC
Found at i:45858790 original size:39 final size:39
Alignment explanation
Indices: 45858745--45858822 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
45858735 TTACGCTAGG
*
45858745 GAAGTGTCTAATCCTTTTTGGGGTTTTGGTTCAGTTTGA
1 GAAGTGTCTAATCCGTTTTGGGGTTTTGGTTCAGTTTGA
45858784 GAAGTGTCTAATCCGTTTTGGGGTTTTGGTTCAGTTTGA
1 GAAGTGTCTAATCCGTTTTGGGGTTTTGGTTCAGTTTGA
45858823 TCATTTAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.15, C:0.10, G:0.29, T:0.45
Consensus pattern (39 bp):
GAAGTGTCTAATCCGTTTTGGGGTTTTGGTTCAGTTTGA
Found at i:45865385 original size:45 final size:45
Alignment explanation
Indices: 45865279--45865497 Score: 304
Period size: 45 Copynumber: 4.9 Consensus size: 45
45865269 TCGAATTCAT
* * *
45865279 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-AT-ATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
*
45865321 TCACCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAATATC
* *
45865366 TCACCGACATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
45865411 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
45865456 TCACCGGCATTATAGTCTGCTAGGCTCAAAGGCCCGAATAAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT
45865498 CAAATCCACA
Statistics
Matches: 157, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
42 11 0.07
43 14 0.09
44 8 0.05
45 123 0.78
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:45870473 original size:12 final size:12
Alignment explanation
Indices: 45870434--45870475 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
45870424 GTGTTGTCGC
45870434 CCGTGTGGTAGG
1 CCGTGTGGTAGG
* * *
45870446 CCGCGTGGTCGC
1 CCGTGTGGTAGG
45870458 CCGTGTGGTAGG
1 CCGTGTGGTAGG
45870470 CCGTGT
1 CCGTGT
45870476 AGCAGTACAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.05, C:0.26, G:0.45, T:0.24
Consensus pattern (12 bp):
CCGTGTGGTAGG
Found at i:45874398 original size:3 final size:3
Alignment explanation
Indices: 45874390--45874424 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
45874380 GGTGTTAAAT
45874390 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
45874425 TCCTTCGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:45876717 original size:22 final size:22
Alignment explanation
Indices: 45876692--45876734 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
45876682 ATGACATCAT
45876692 CACTCATTTGGGGGCACACGGG
1 CACTCATTTGGGGGCACACGGG
45876714 CACTCATTTGGGGGCACACGG
1 CACTCATTTGGGGGCACACGG
45876735 CCAAGGCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.28, G:0.35, T:0.19
Consensus pattern (22 bp):
CACTCATTTGGGGGCACACGGG
Found at i:45883360 original size:18 final size:18
Alignment explanation
Indices: 45883337--45883379 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
45883327 GGCAATGGAT
45883337 ACTTGTTCTTGATAGTTA
1 ACTTGTTCTTGATAGTTA
45883355 ACTTGTTCTTGATAGTTA
1 ACTTGTTCTTGATAGTTA
*
45883373 CCTTGTT
1 ACTTGTT
45883380 AAGTTGTCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (18 bp):
ACTTGTTCTTGATAGTTA
Done.