Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 143 of 253
Found at i:45896432 original size:27 final size:27
Alignment explanation
Indices: 45896402--45896504 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
45896392 ATTATCAAAG
* *
45896402 TACCCCCGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAGAATTACCGTTT
* *
45896429 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*** *
45896456 TACCAAAGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
45896483 TACCCTCGATATACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
45896505 TAAAATACCC
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:45896513 original size:27 final size:27
Alignment explanation
Indices: 45896483--45896845 Score: 120
Period size: 27 Copynumber: 13.4 Consensus size: 27
45896473 ATTACCGTTT
* * *
45896483 TACCCTCGATATACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTGAAA
* *
45896510 TACCC-CTAGTTTGTAAAATTACTGAAA
1 TACCCTCGA-TTTATAAAATTACTGAAA
*
45896537 TACCCCCTGATTTATAAAATTACTGAAA
1 TACCCTC-GATTTATAAAATTACTGAAA
* *
45896565 CACCCTCGACTTGTA-AAAATTAC-CAAA
1 TACCCTCGA-TT-TATAAAATTACTGAAA
* * ***
45896592 GTACCATCGATTTATAGAATTACTGTTT
1 -TACCCTCGATTTATAAAATTACTGAAA
* * * **
45896620 TACCCTCAATTTACAGAATTACT-ATTT
1 TACCCTCGATTTATAAAATTACTGA-AA
* * **
45896647 TACCC-CTGATTTACAAAATTAC-CATTT
1 TACCCTC-GATTTATAAAATTACTGA-AA
*
45896674 TACCCTCGA-TTATGAAATTACT-AAA
1 TACCCTCGATTTATAAAATTACTGAAA
* ** * **
45896699 TACCC-CTATAGAGTAGAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACTGAAA
* * * **
45896726 CACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTGAAA
* * * *
45896753 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACTGAAA
* * **
45896780 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTGAAA
* * *
45896807 TACCC-CTAATTTACAAAATTACAGAAA
1 TACCCTC-GATTTATAAAATTACTGAAA
*
45896834 TACCCTTGATTT
1 TACCCTCGATTT
45896846 GTAGATTTAC
Statistics
Matches: 261, Mismatches: 53, Indels: 44
0.73 0.15 0.12
Matches are distributed among these distances:
24 2 0.01
25 6 0.02
26 26 0.10
27 181 0.69
28 43 0.16
29 3 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTGAAA
Found at i:45896554 original size:28 final size:28
Alignment explanation
Indices: 45896497--45896569 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 28
45896487 CTCGATATAC
* *
45896497 AAAATTACTAAAATA-CCCCTAGTTTGT
1 AAAATTACTGAAATACCCCCTAGTTTAT
45896524 AAAATTACTGAAATACCCCCT-GATTTAT
1 AAAATTACTGAAATACCCCCTAG-TTTAT
*
45896552 AAAATTACTGAAACACCC
1 AAAATTACTGAAATACCC
45896570 TCGACTTGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 15 0.37
28 26 0.63
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (28 bp):
AAAATTACTGAAATACCCCCTAGTTTAT
Found at i:45896583 original size:28 final size:28
Alignment explanation
Indices: 45896497--45896587 Score: 82
Period size: 28 Copynumber: 3.3 Consensus size: 28
45896487 CTCGATATAC
* * *
45896497 AAAATTACTAAAATA-CCCCTAGTTTGT-
1 AAAATTACTGAAACACCCCCT-GATTGTA
*
45896524 AAAATTACTGAAATACCCCCTGATT-TA
1 AAAATTACTGAAACACCCCCTGATTGTA
*
45896551 TAAAATTACTGAAACACCCTC-GACTTGTA
1 -AAAATTACTGAAACACCCCCTGA-TTGTA
45896580 AAAATTAC
1 AAAATTAC
45896588 CAAAGTACCA
Statistics
Matches: 55, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
26 1 0.02
27 19 0.35
28 33 0.60
29 2 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (28 bp):
AAAATTACTGAAACACCCCCTGATTGTA
Found at i:45896826 original size:54 final size:54
Alignment explanation
Indices: 45896497--45896865 Score: 196
Period size: 54 Copynumber: 6.8 Consensus size: 54
45896487 CTCGATATAC
** * **
45896497 AAAATTACTAAAATACCC-CTAGTTTGTAAAATTACTGAAATACCCCCTGATTTAT
1 AAAATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATA-CCCCTGATTTAT
* * * * * *
45896552 AAAATTACTGAAACACCCTCGACTTGTAAAAATTACCAAAGTA-CCATCGATTTAT
1 AAAATTACCGAAATACCCTCAATTTGT-AAAATTACCAAAATACCCCT-GATTTAT
* * *** ** * * *** *
45896607 AGAATTACTGTTTTACCCTCAATTTACAGAATTACTATTTTACCCCTGATTTAC
1 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAT
** * * **
45896661 AAAATTACC-ATTTTACCCTCGATTATG--AAATTA-CTAAATACCCCT-ATAGAGT
1 AAAATTACCGA-AATACCCTCAATT-TGTAAAATTACCAAAATACCCCTGATTTA-T
* * * * * * *
45896713 AGAATTACCAAAACACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATTTAT
* * *
45896767 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTAC
1 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAT
* ** * * *
45896821 AAAATTACAGAAATACCCTTGATTTGTAGATTTACCAAAACACCC
1 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCC
45896866 TTGTAGGATG
Statistics
Matches: 232, Mismatches: 68, Indels: 29
0.71 0.21 0.09
Matches are distributed among these distances:
51 6 0.03
52 21 0.09
53 12 0.05
54 129 0.56
55 51 0.22
56 13 0.06
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAT
Found at i:45896856 original size:81 final size:81
Alignment explanation
Indices: 45896715--45896866 Score: 184
Period size: 81 Copynumber: 1.9 Consensus size: 81
45896705 TATAGAGTAG
* ** * *
45896715 AATTACCAAAACACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 AATTACCAAAACACCCCTAATTTACAAAATTACCAAAATACCACTGATTTGTGAAATTACCAAAA
*
45896780 TACCCTCAATTTGTAA
66 CACCCTCAATTTGTAA
* *
45896796 AATTACCAAAATACCCCTAATTTACAAAATTA-CAGAAATACC-CTTGATTTGT-AGATTTACCA
1 AATTACCAAAACACCCCTAATTTACAAAATTACCA-AAATACCAC-TGATTTGTGA-AATTACCA
45896858 AAACACCCT
63 AAACACCCT
45896867 TGTAGGATGA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
80 4 0.07
81 56 0.93
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (81 bp):
AATTACCAAAACACCCCTAATTTACAAAATTACCAAAATACCACTGATTTGTGAAATTACCAAAA
CACCCTCAATTTGTAA
Found at i:45896929 original size:27 final size:27
Alignment explanation
Indices: 45896862--45896959 Score: 74
Period size: 27 Copynumber: 3.6 Consensus size: 27
45896852 TTACCAAAAC
* * * **
45896862 ACCCTTGTAGGATGAAATGACTAAAAT
1 ACCCTTGTAGGGTAAAAAGACTGTAAT
*
45896889 ACCCTTAATA-GGTAAAAAGACTGTAA-
1 ACCCTT-GTAGGGTAAAAAGACTGTAAT
* **
45896915 AGCCTCTGTAGGGTAAAGTGACTGTAAT
1 ACCCT-TGTAGGGTAAAAAGACTGTAAT
*
45896943 ACCCTTGTATGGTAAAA
1 ACCCTTGTAGGGTAAAA
45896960 TGATGAATAC
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
26 6 0.11
27 42 0.78
28 6 0.11
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (27 bp):
ACCCTTGTAGGGTAAAAAGACTGTAAT
Found at i:45897595 original size:25 final size:25
Alignment explanation
Indices: 45897567--45897614 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
45897557 TTATAGTATG
* * *
45897567 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
45897592 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
45897615 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:45897675 original size:20 final size:20
Alignment explanation
Indices: 45897650--45897736 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
45897640 GATATGATAT
*
45897650 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
45897670 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
45897690 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
*
45897710 ACATGATACGTATGAAATGC
1 ACATGATATGTATGAAATGC
45897730 ACATGAT
1 ACATGAT
45897737 GTATTCATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:45897859 original size:25 final size:26
Alignment explanation
Indices: 45897786--45897882 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
45897776 GAGGAAGTGC
45897786 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * **
45897812 AAAAGGGCTTATGCCCTATTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
45897838 AAAAAGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
45897863 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
45897883 ATTAAAAGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
25 30 0.49
26 31 0.51
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:45898087 original size:42 final size:42
Alignment explanation
Indices: 45898028--45898119 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
45898018 TAGTCTCCCC
* ** *
45898028 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
45898070 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
45898112 AAATGGGC
1 AAATGGGC
45898120 CTATAGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:45898178 original size:31 final size:31
Alignment explanation
Indices: 45898143--45898248 Score: 176
Period size: 31 Copynumber: 3.4 Consensus size: 31
45898133 CATTTACAGT
* *
45898143 AAAGGTTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
45898174 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
45898205 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
45898236 AAAGGTTTCGGCC
1 AAAGGCTTCGGCC
45898249 TAGTAACCGT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:45900500 original size:27 final size:27
Alignment explanation
Indices: 45900469--45900693 Score: 123
Period size: 27 Copynumber: 8.3 Consensus size: 27
45900459 TAGTTTACCA
* *
45900469 AATTACTAAAGTACCCCCGATTTACAG
1 AATTACTAAAATACCCTCGATTTACAG
***** *
45900496 AATTACCGTTCTACCCTCGATTTATAG
1 AATTACTAAAATACCCTCGATTTACAG
***** * *
45900523 AATTACCGTTTTACCCTCGATTTAAAA
1 AATTACTAAAATACCCTCGATTTACAG
* *
45900550 AATTACTAAAATACCCCTAGTTTGTA-A-
1 AATTACTAAAATA-CCCTCGATT-TACAG
* * ** *
45900577 AATTACTAAAATACCCCCTAATTTGTAA
1 AATTACTAAAATACCCTC-GATTTACAG
*
45900605 AATTACTGAAATACCCTCGACTTGTACA-
1 AATTACTAAAATACCCTCGA-TT-TACAG
* * *
45900633 AATTACCAAAGTACCCTCGATTTATAG
1 AATTACTAAAATACCCTCGATTTACAG
***
45900660 AATTACTATTTTACCCTCGATTTACAG
1 AATTACTAAAATACCCTCGATTTACAG
45900687 AATTACT
1 AATTACT
45900694 GTTTAACCCC
Statistics
Matches: 154, Mismatches: 36, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
26 7 0.05
27 100 0.65
28 43 0.28
29 4 0.03
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (27 bp):
AATTACTAAAATACCCTCGATTTACAG
Found at i:45900594 original size:28 final size:28
Alignment explanation
Indices: 45900548--45900620 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
45900538 CTCGATTTAA
*
45900548 AAAATTACTAAAATA-CCCCTAGTTTGT
1 AAAATTACTAAAATACCCCCTAATTTGT
45900575 AAAATTACTAAAATACCCCCTAATTTGT
1 AAAATTACTAAAATACCCCCTAATTTGT
*
45900603 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
45900621 TCGACTTGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 15 0.35
28 28 0.65
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.30
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTAATTTGT
Found at i:45900635 original size:28 final size:27
Alignment explanation
Indices: 45900534--45900900 Score: 165
Period size: 27 Copynumber: 13.6 Consensus size: 27
45900524 ATTACCGTTT
**
45900534 TACCCTCGATTTAAAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
*
45900561 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTCGA-TTTGTAAAATTACTAAAA
* * *
45900588 TACCCCCTAATTTGTAAAATTACTGAAA
1 TACCCTC-GATTTGTAAAATTACTAAAA
* * *
45900616 TACCCTCGACTTGTACAAATTACCAAAG
1 TACCCTCGATTTGTA-AAATTACTAAAA
* * ***
45900644 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTGTAAAATTACTAAAA
** * ***
45900671 TACCCTCGATTTACAGAATTACT-GTT
1 TACCCTCGATTTGTAAAATTACTAAAA
* ** * ***
45900697 TAACCC-CTAATTTACAAAATTACCATTT
1 T-ACCCTC-GATTTGTAAAATTACTAAAA
*
45900725 TACCCTCGATTATG--AAATTACTGAAA
1 TACCCTCGATT-TGTAAAATTACTAAAA
* ** * *
45900751 TACCC-CTATAGGGTAGAATTACCAAAA
1 TACCCTCGAT-TTGTAAAATTACTAAAA
* * *
45900778 CACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACTAAAA
* **
45900805 TACCACT-GATTTGTGAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACTAAAA
* * *
45900832 TACCCTCAATTTATAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
** ** *
45900859 TACCCTTAATTTACAAAATTACAAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
*
45900886 TACCCTTGATTTGTA
1 TACCCTCGATTTGTA
45900901 GGTTTACCAA
Statistics
Matches: 269, Mismatches: 55, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
25 4 0.01
26 20 0.07
27 190 0.71
28 54 0.20
29 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACTAAAA
Found at i:45901909 original size:37 final size:37
Alignment explanation
Indices: 45901844--45901995 Score: 223
Period size: 37 Copynumber: 4.1 Consensus size: 37
45901834 ACCTTTAGCT
* * * *
45901844 CGGACGAAATCTCCACAAGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
45901881 CGAACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
45901918 CGGGCAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
45901955 CGGACATACTCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
45901992 CGGA
1 CGGA
45901996 ATATATTTCC
Statistics
Matches: 104, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.21
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:45902181 original size:47 final size:47
Alignment explanation
Indices: 45902116--45902391 Score: 399
Period size: 47 Copynumber: 5.9 Consensus size: 47
45902106 CATTTGGTCG
* *
45902116 TTCGGCCTTATCATATATATGCATGCTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGGCCA
* * *
45902163 TTCGGCCTCATCACATATATACATGTTCACATTCATCACATAGGCCA
1 TTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGGCCA
* *
45902210 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGTCA
1 TTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGGCCA
* * *
45902257 TTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCA
1 TTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGGCCA
* * *
45902304 TTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGGCCA
* ***
45902351 TTTGGCCTTATCACATATATACACATTCACATTCATCACAT
1 TTCGGCCTTATCACATATATACATGCTCACATTCATCACAT
45902392 AAAATCCTAA
Statistics
Matches: 201, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 201 1.00
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TTCGGCCTTATCACATATATACATGCTCACATTCATCACATTGGCCA
Found at i:45902218 original size:94 final size:94
Alignment explanation
Indices: 45902116--45902392 Score: 455
Period size: 94 Copynumber: 2.9 Consensus size: 94
45902106 CATTTGGTCG
* *
45902116 TTCGGCCTTATCATATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTCATCACATAT
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATAT
45902181 ATACATGTTCACATTCATCACATAGGCCA
66 ATACATGTTCACATTCATCACATAGGCCA
*
45902210 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGTCATTCGGCCTTATCACATAT
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATAT
* * *
45902275 ATACATGTTCATATTCACCACATTGGCCA
66 ATACATGTTCACATTCATCACATAGGCCA
* * *
45902304 TTCAGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTTGGCCTTATCACATAT
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATAT
**
45902369 ATACACATTCACATTCATCACATA
66 ATACATGTTCACATTCATCACATA
45902393 AAATCCTAAA
Statistics
Matches: 168, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 168 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATAT
ATACATGTTCACATTCATCACATAGGCCA
Found at i:45906534 original size:40 final size:40
Alignment explanation
Indices: 45906501--45906810 Score: 453
Period size: 40 Copynumber: 7.8 Consensus size: 40
45906491 CCAGCATGAT
* * * *
45906501 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
45906541 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
45906581 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
45906621 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
45906661 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
45906701 TGCTCTTC-GGACTTAG-CCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
45906739 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
45906779 TGCTCTTCGGGATTTAGCCCGGACATTTCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
45906811 CTCAATTCTC
Statistics
Matches: 245, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
38 30 0.12
39 15 0.06
40 200 0.82
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:45906810 original size:118 final size:120
Alignment explanation
Indices: 45906501--45906810 Score: 507
Period size: 118 Copynumber: 2.6 Consensus size: 120
45906491 CCAGCATGAT
** * * * * *
45906501 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
45906566 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
66 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
45906621 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
*
45906686 CATCACTAGCACGAATGCTCTTCGG-ACTTAG-CCGGATACATCACTAGCACGAA
66 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
45906739 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGACA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
*
45906804 TTTCACT
66 TATCACT
45906811 CTCAATTCTC
Statistics
Matches: 177, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
118 90 0.51
119 6 0.03
120 81 0.46
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:45908121 original size:37 final size:37
Alignment explanation
Indices: 45908062--45908204 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
45908052 TAGCTCGACG
* *
45908062 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
45908099 AAATCTCCACACGTAGTCATCGGGTCTTA-CCGG-C-
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
45908133 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
45908170 TACTCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
45908205 ATATATTTCC
Statistics
Matches: 98, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
34 29 0.30
35 5 0.05
36 5 0.05
37 59 0.60
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:45908155 original size:71 final size:71
Alignment explanation
Indices: 45908062--45908196 Score: 234
Period size: 71 Copynumber: 1.9 Consensus size: 71
45908052 TAGCTCGACG
*
45908062 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
45908127 ACCGGC
66 ACCGGC
* * *
45908133 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATACTCTCCACACGTAGTCATCGGGTCT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCT
45908197 CACCCGGAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (71 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
ACCGGC
Found at i:45908435 original size:92 final size:94
Alignment explanation
Indices: 45908325--45908551 Score: 341
Period size: 92 Copynumber: 2.4 Consensus size: 94
45908315 CATTTGGTCG
* *
45908325 TTCGGCCTTATCATATATATGCATGCTCACATTCATCACATTGGCCATTCGACCTCATCACATAT
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGACCTCATCACACAT
*
45908390 ATACATGTTCA-ATTCATCACA-TGGCCA
66 ATACATGCTCACATTCATCACATTGGCCA
* *
45908417 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGACCTCATCACACAT
*
45908482 ATGCATGCTCACATTCATCACATTGGCCA
66 ATACATGCTCACATTCATCACATTGGCCA
* * ***
45908511 TTCAGCCTTATCACATATATACACATTCACATTCATCACAT
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
45908552 AAAATCCTAA
Statistics
Matches: 122, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
92 70 0.57
93 10 0.08
94 42 0.34
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (94 bp):
TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCATTCGACCTCATCACACAT
ATACATGCTCACATTCATCACATTGGCCA
Found at i:45908468 original size:47 final size:47
Alignment explanation
Indices: 45908325--45908551 Score: 341
Period size: 47 Copynumber: 4.9 Consensus size: 47
45908315 CATTTGGTCG
*
45908325 TTCGGCCTTATCATATATATGCATGCTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCA
* * * *
45908372 TTCGACCTCATCACATATATACATGTTCA-ATTCATCACA-TGGCCA
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCA
45908417 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCA
*
45908464 TTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCA
* * ***
45908511 TTCAGCCTTATCACATATATACACATTCACATTCATCACAT
1 TTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
45908552 AAAATCCTAA
Statistics
Matches: 162, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 31 0.19
46 20 0.12
47 111 0.69
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
TTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTGGCCA
Found at i:45908525 original size:22 final size:22
Alignment explanation
Indices: 45908451--45908526 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
45908441 GCTCACATTC
*
45908451 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCAGCCTT
*
45908473 ATCACACATAT-G-CATGCTCA-CATT
1 AT--CACAT-TGGCCAT--TCAGCCTT
45908497 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTGGCCATTCAGCCTT
45908520 ATCACAT
1 ATCACAT
45908527 ATATACACAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 13 0.31
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:45908595 original size:139 final size:136
Alignment explanation
Indices: 45908325--45908575 Score: 312
Period size: 139 Copynumber: 1.8 Consensus size: 136
45908315 CATTTGGTCG
* *
45908325 TTCGGCCTTATCATATATATGCATGCTCACATTCATCACATTGGCCATTCGACCTCATCACATAT
1 TTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGACCTCATCACATAT
** ** * * * **
45908390 ATACATGTTCAATTCATCACATGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCA
66 ATACACATTCAATTCATCACAT-GAAAAT--GCCTAATCACAAATATAAATGCTCACATTCATCA
45908455 CATTGGCCA
128 CATTGGCCA
*
45908464 TTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTC-AGCCTTATCACATA
1 TTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGA-CCTCATCACATA
45908528 TATACACATTCACATTCATCACAT-AAAAT-CCTAAATCA-AAATATAAAT
65 TATACACATTCA-ATTCATCACATGAAAATGCCT-AATCACAAATATAAAT
45908576 TTTCATGTAT
Statistics
Matches: 97, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
135 10 0.10
136 4 0.04
138 3 0.03
139 69 0.71
140 11 0.11
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.31
Consensus pattern (136 bp):
TTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGACCTCATCACATAT
ATACACATTCAATTCATCACATGAAAATGCCTAATCACAAATATAAATGCTCACATTCATCACAT
TGGCCA
Found at i:45912008 original size:20 final size:20
Alignment explanation
Indices: 45911983--45912069 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
45911973 GATATGATAT
*
45911983 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
45912003 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
45912023 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
* *
45912043 ACGTGATACGTATGAAATGC
1 ACATGATATGTATGAAATGC
45912063 ACATGAT
1 ACATGAT
45912070 GTATTCATAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 58 0.97
21 2 0.03
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:45912190 original size:25 final size:25
Alignment explanation
Indices: 45912119--45912253 Score: 193
Period size: 25 Copynumber: 5.4 Consensus size: 25
45912109 GAGGAAGTGC
*
45912119 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
45912145 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
45912171 AAAAGGGCTTTGCCCCAGTTTATTG
1 AAAAGGGCTTTGCCCCAGTTTATTG
* **
45912196 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATTG
45912221 AAAAGGGCTTTGCCCCAG-TTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
45912244 AAAAGAGGCT
1 AAAAG-GGCT
45912254 AAGCCTCTAG
Statistics
Matches: 101, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 54 0.53
26 35 0.35
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:45912445 original size:42 final size:42
Alignment explanation
Indices: 45912386--45912477 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
45912376 TAGTCTCCCC
* ** *
45912386 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
45912428 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
45912470 AAATGGGC
1 AAATGGGC
45912478 CTCTGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:45915565 original size:4 final size:4
Alignment explanation
Indices: 45915556--45915583 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
45915546 AAGTTTTATT
45915556 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
45915584 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:45924247 original size:17 final size:18
Alignment explanation
Indices: 45924220--45924253 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
45924210 GTGCAAAAGT
45924220 GGTGTTCTAATAGCTAAA
1 GGTGTTCTAATAGCTAAA
45924238 GGTG-TCTAATAGCTAA
1 GGTGTTCTAATAGCTAA
45924254 GAAACTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (18 bp):
GGTGTTCTAATAGCTAAA
Found at i:45937270 original size:19 final size:19
Alignment explanation
Indices: 45937246--45937307 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
45937236 AATCTTTAAG
45937246 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45937265 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45937284 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
45937305 GAT
1 GAT
45937308 CTTGTAATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
21 9 0.22
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:45940553 original size:19 final size:18
Alignment explanation
Indices: 45940513--45940552 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
45940503 GAACTATTTA
*
45940513 TTTTGATGTTTTTAGTAT
1 TTTTGATGTTTATAGTAT
45940531 TTTTGATGGTTTATA-TAT
1 TTTTGAT-GTTTATAGTAT
45940549 TTTT
1 TTTT
45940553 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.17, C:0.00, G:0.15, T:0.68
Consensus pattern (18 bp):
TTTTGATGTTTATAGTAT
Found at i:45940584 original size:12 final size:12
Alignment explanation
Indices: 45940554--45940586 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
45940544 TATATTTTTT
45940554 AAAATT-ATATA
1 AAAATTAATATA
45940565 AAAA-TAATATA
1 AAAATTAATATA
45940576 AAAATTAATAT
1 AAAATTAATAT
45940587 GGGCAGGACG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:45942573 original size:79 final size:81
Alignment explanation
Indices: 45942440--45942617 Score: 297
Period size: 79 Copynumber: 2.2 Consensus size: 81
45942430 GATCCAAAGT
*
45942440 TTTATGTAAGTTATGATATAATATATATATTTTTTATATTCACTAAATGTTAGAAATTACATTTT
1 TTTATGTAAGTTATGATATAATATATATATTTTTTATATTCACTAAATGTTAGAAATCACATTTT
*
45942505 TTATATTCTTTAAATG
66 TTATACTCTTTAAATG
* **
45942521 TTTATGTAAGTTATGATAT-A-ATATATATTTTTTATATTCTCTAAATGTTAGAAATCGTATTTT
1 TTTATGTAAGTTATGATATAATATATATATTTTTTATATTCACTAAATGTTAGAAATCACATTTT
45942584 TTATACTCTTTAAATG
66 TTATACTCTTTAAATG
45942600 TTTATGTAAGTTATGATA
1 TTTATGTAAGTTATGATA
45942618 ATCATTAACT
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
79 72 0.78
80 1 0.01
81 19 0.21
ACGTcount: A:0.34, C:0.05, G:0.09, T:0.52
Consensus pattern (81 bp):
TTTATGTAAGTTATGATATAATATATATATTTTTTATATTCACTAAATGTTAGAAATCACATTTT
TTATACTCTTTAAATG
Found at i:45943320 original size:24 final size:23
Alignment explanation
Indices: 45943291--45943361 Score: 81
Period size: 24 Copynumber: 3.0 Consensus size: 23
45943281 TTTGATAAAT
45943291 TTAAATATCAAATTAGAAAAAAAA
1 TTAAATATCAAATTA-AAAAAAAA
* *
45943315 TTAAATACCAAATTAAAAAAATA
1 TTAAATATCAAATTAAAAAAAAA
*
45943338 TAAAAT-TCAATTATTAAAAAAAAA
1 TTAAATATCAA--ATTAAAAAAAAA
45943362 AGAGTATAGA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 3 0.08
23 12 0.30
24 25 0.62
ACGTcount: A:0.66, C:0.06, G:0.01, T:0.27
Consensus pattern (23 bp):
TTAAATATCAAATTAAAAAAAAA
Found at i:45945086 original size:21 final size:21
Alignment explanation
Indices: 45945060--45945100 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45945050 CTGATTTGGG
*
45945060 GAAAAGAAATTGGGGAAAAAT
1 GAAAAGAAATTGGGAAAAAAT
* *
45945081 GAAAAGGATTTGGGAAAAAA
1 GAAAAGAAATTGGGAAAAAA
45945101 ACTTTGGGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.29, T:0.15
Consensus pattern (21 bp):
GAAAAGAAATTGGGAAAAAAT
Found at i:45945173 original size:76 final size:76
Alignment explanation
Indices: 45945036--45945304 Score: 335
Period size: 76 Copynumber: 3.5 Consensus size: 76
45945026 TGCGCATATA
* *
45945036 TCGGGAAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAATGAAAAGGATTTGGGAAAAAA
1 TCGGGGAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAAAGAAAAGGATTTGGGAAAAAA
45945101 ACTTTGGGATT
66 ACTTTGGGATT
* * * * * * * *
45945112 TCGGGGAGGGGGAATTGATTTAGGGAAAAGGAATTGGGGAAAAAAGAAAGGGGTCTAGGAAAGAA
1 TCGGGGAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAAAGAAAAGGATTTGGGAAAAAA
*
45945177 ACTTAGGGATT
66 ACTTTGGGATT
* * *
45945188 TCGGGGAGAGGGGGAACTGGTTT-GGGAAAAGAAATTGGGGAAAAAAGAAATGAATTTGGGAAAA
1 TC-GGG-GAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAAAGAAAAGGATTTGGGAAAA
*
45945252 ACA-TTTAGGGATT
64 AAACTTT-GGGATT
* *
45945265 TCGAGGAGGAGGGAACTAATTTGGGGAAAAGAAATTGGGG
1 TCGGGGAGG-GGGAACTGATTTGGGGAAAAGAAATTGGGG
45945305 TTTTGGGGCT
Statistics
Matches: 163, Mismatches: 25, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
75 4 0.02
76 81 0.50
77 64 0.39
78 14 0.09
ACGTcount: A:0.38, C:0.04, G:0.38, T:0.20
Consensus pattern (76 bp):
TCGGGGAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAAAGAAAAGGATTTGGGAAAAAA
ACTTTGGGATT
Found at i:45945246 original size:21 final size:20
Alignment explanation
Indices: 45945213--45945252 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
45945203 ACTGGTTTGG
45945213 GAAAAGAAATTGGGGAAAAAA
1 GAAAAGAAATT-GGGAAAAAA
* *
45945234 GAAATGAATTTGGGAAAAA
1 GAAAAGAAATTGGGAAAAA
45945253 CATTTAGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.00, G:0.28, T:0.15
Consensus pattern (20 bp):
GAAAAGAAATTGGGAAAAAA
Found at i:45951613 original size:41 final size:41
Alignment explanation
Indices: 45951549--45951736 Score: 218
Period size: 41 Copynumber: 4.5 Consensus size: 41
45951539 TGTATCAGTG
*
45951549 ATATTCGGGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATA
1 ATATT-GGGCTTTA-TGCCTAGCAGGCTTTGTGCCAGTGTATA
45951592 ATATTGGGCTTTATGCCTAGCAGGCTTTGTGCCAGTGTATA
1 ATATTGGGCTTTATGCCTAGCAGGCTTTGTGCCAGTGTATA
* **
45951633 ATATCGGGCTTTATGCCTAATAGGCTTTGTGCCAGTGTA-A
1 ATATTGGGCTTTATGCCTAGCAGGCTTTGTGCCAGTGTATA
*** * * *
45951673 TATATCAAGC-TTATTGCCTAGCAGGCTCTGTGCCGGTGTATT
1 -ATATTGGGCTTTA-TGCCTAGCAGGCTTTGTGCCAGTGTATA
* *
45951715 ATACTAGGCTTTATGCCTAGCA
1 ATATTGGGCTTTATGCCTAGCA
45951737 AATTTTATGT
Statistics
Matches: 127, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
40 4 0.03
41 107 0.84
42 11 0.09
43 5 0.04
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (41 bp):
ATATTGGGCTTTATGCCTAGCAGGCTTTGTGCCAGTGTATA
Found at i:45952746 original size:18 final size:18
Alignment explanation
Indices: 45952725--45952761 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
45952715 CAAGGTCTCT
*
45952725 AGCAAAATCAGCATTAAC
1 AGCAAAATCAGCATCAAC
45952743 AGCAAAATCAGCATCAAC
1 AGCAAAATCAGCATCAAC
45952761 A
1 A
45952762 TACCCTATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.24, G:0.11, T:0.14
Consensus pattern (18 bp):
AGCAAAATCAGCATCAAC
Found at i:45963833 original size:121 final size:121
Alignment explanation
Indices: 45963619--45963855 Score: 411
Period size: 121 Copynumber: 2.0 Consensus size: 121
45963609 TCTCTCCTAC
* *
45963619 TGTGCAATAGTCCAAATGAAAGGAACTCCCTTACGCAGAAGCTTAGTGAACGGAGCTGTGATCAA
1 TGTGCAATAGTCCAAATGAAAGGAACTCCCTTACGCAGAAGCTTAGTCAACGGAGCTGCGATCAA
* * *
45963684 GGAGAACCATTCAATGAAATGTCGATAATATCCTGCAGTCTTAGAAAACTACGGAT
66 GGAGAACCATTCAACGAAATGTCGATAATATCCTGCAGCCCTAGAAAACTACGGAT
45963740 TGTGCAATAGTCCAAATGAAAGGAACTCCCTTACGCAGAAGCTTAGTCAACGGAGCTGCGATCAA
1 TGTGCAATAGTCCAAATGAAAGGAACTCCCTTACGCAGAAGCTTAGTCAACGGAGCTGCGATCAA
* *
45963805 GGAGAACCCTTCTACGAAATGTCGATAATATCCTGCAGCCCTAGAAAACTA
66 GGAGAACCATTCAACGAAATGTCGATAATATCCTGCAGCCCTAGAAAACTA
45963856 ATGATTTCAG
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 109 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (121 bp):
TGTGCAATAGTCCAAATGAAAGGAACTCCCTTACGCAGAAGCTTAGTCAACGGAGCTGCGATCAA
GGAGAACCATTCAACGAAATGTCGATAATATCCTGCAGCCCTAGAAAACTACGGAT
Found at i:45966839 original size:40 final size:40
Alignment explanation
Indices: 45966703--45966889 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
45966693 TTGAATGATG
* * * *
45966703 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
45966743 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45966783 TTCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45966824 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45966865 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45966890 AACGAGGAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
40 86 0.66
41 45 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45966841 original size:81 final size:82
Alignment explanation
Indices: 45966703--45966889 Score: 240
Period size: 81 Copynumber: 2.3 Consensus size: 82
45966693 TTGAATGATG
*
45966703 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
45966767 TGTGCGAGATACTA-AA
66 TGTGCGAGATACTATAA
* * * * **
45966783 TTCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
45966846 TTTGTGCGAGTTACTATAA
64 TTTGTGCGAGATACTATAA
*
45966865 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45966890 AACGAGGAGC
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
80 24 0.26
81 60 0.65
82 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATAA
Found at i:45974723 original size:40 final size:40
Alignment explanation
Indices: 45974591--45974775 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
45974581 TTGAATGATG
* * * *
45974591 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
45974631 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
45974670 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45974710 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45974751 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45974776 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 34 0.26
40 84 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45974727 original size:79 final size:81
Alignment explanation
Indices: 45974591--45974775 Score: 252
Period size: 79 Copynumber: 2.3 Consensus size: 81
45974581 TTGAATGATG
*
45974591 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
45974655 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
45974670 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
45974733 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
45974750 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45974776 AACGAGGAGC
Statistics
Matches: 94, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 61 0.65
80 32 0.34
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:45974797 original size:79 final size:79
Alignment explanation
Indices: 45974592--45974808 Score: 226
Period size: 79 Copynumber: 2.7 Consensus size: 79
45974582 TGAATGATGT
** * * * **
45974592 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
45974655 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
** * *
45974671 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTG
*
45974736 TGCGAGTTACTATAA
66 TGCGAGATACTA-AA
* * *
45974751 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
45974809 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 74 0.63
80 43 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:45979433 original size:29 final size:28
Alignment explanation
Indices: 45979379--45979446 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
45979369 TTTTGCACTG
* *
45979379 TACTGATACTGTATTGGTGCTTAGGCCCA
1 TACTG-TACTGTATTGGGGCTAAGGCCCA
45979408 TACTGCTACTGT-TTAGGGGCTAAGGCCCA
1 TACTG-TACTGTATT-GGGGCTAAGGCCCA
*
45979437 GACTGTACTG
1 TACTGTACTG
45979447 ATACTGAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.21
29 27 0.79
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (28 bp):
TACTGTACTGTATTGGGGCTAAGGCCCA
Found at i:45984818 original size:49 final size:49
Alignment explanation
Indices: 45984741--45984835 Score: 136
Period size: 49 Copynumber: 1.9 Consensus size: 49
45984731 TTATGCTATG
* * * *
45984741 CATTTCTAAACTTGGTCTTCCACTGTCTACACTTTTATCACTATTTATA
1 CATTGCTAAAATTAGTCTTCCACTGTCTACACTCTTATCACTATTTATA
* *
45984790 CATTGCTAAAATTAGTCTTCCATTGTCTACACTCTTATCATTATTT
1 CATTGCTAAAATTAGTCTTCCACTGTCTACACTCTTATCACTATTT
45984836 TTCCCTTCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.25, C:0.23, G:0.06, T:0.45
Consensus pattern (49 bp):
CATTGCTAAAATTAGTCTTCCACTGTCTACACTCTTATCACTATTTATA
Found at i:45986175 original size:43 final size:43
Alignment explanation
Indices: 45986127--45986208 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
45986117 ATCTCATTTC
45986127 TCATCTCATATTCATTTCTCATATTT-TCCATTTCAATATTTTA
1 TCATCTCATATTCATTTCTCATATTTGT-CATTTCAATATTTTA
*
45986170 TCATCTCATATTCATTTCTCATCTTTGTCATTTCAATAT
1 TCATCTCATATTCATTTCTCATATTTGTCATTTCAATAT
45986209 CAATCACATA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
43 36 0.97
44 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.01, T:0.52
Consensus pattern (43 bp):
TCATCTCATATTCATTTCTCATATTTGTCATTTCAATATTTTA
Found at i:45990893 original size:47 final size:47
Alignment explanation
Indices: 45990824--45990917 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
45990814 AATACACTCT
45990824 TAATCTTACTGAAAGAGAAGGGGGCTCACTCTAGTTAATTTTTCTAA
1 TAATCTTACTGAAAGAGAAGGGGGCTCACTCTAGTTAATTTTTCTAA
45990871 TAATCTTACTGAAAGAGAAGGGGGCTCACTCTAGTTAATTTTTCTAA
1 TAATCTTACTGAAAGAGAAGGGGGCTCACTCTAGTTAATTTTTCTAA
45990918 GGTTGTTACC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (47 bp):
TAATCTTACTGAAAGAGAAGGGGGCTCACTCTAGTTAATTTTTCTAA
Found at i:46002671 original size:45 final size:45
Alignment explanation
Indices: 46002614--46002704 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
46002604 GAACTATGTG
*
46002614 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
* * *
46002659 ATCTGAATTCATTGAGTTGTGGTCTAATTTCATGATGTATGTGAC
1 ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
46002704 A
1 A
46002705 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
Found at i:46005995 original size:79 final size:81
Alignment explanation
Indices: 46005886--46006068 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
46005876 TACTCGTTCA
* *
46005886 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
46005949 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
46005966 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
46006029 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
46006045 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
46006069 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:46006068 original size:40 final size:40
Alignment explanation
Indices: 46005865--46006068 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
46005855 CGGAATTTAA
** *
46005865 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46005905 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46005945 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46005984 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
46006024 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
46006064 CCGGA
1 CCGGA
46006069 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:46021033 original size:27 final size:27
Alignment explanation
Indices: 46021003--46021094 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 27
46020993 CTACCCTGAA
*
46021003 TTTAACGTCCCATCAAAGTATCTCGTG
1 TTTAACGTCCCATCAAACTATCTCGTG
* * * * *
46021030 TTTAACCTCTCGTCAGACTATCTCATG
1 TTTAACGTCCCATCAAACTATCTCGTG
** *
46021057 TTTAAAAT-CTAGTCAAACTATCTCGTG
1 TTTAACGTCCCA-TCAAACTATCTCGTG
46021084 TTTAACGTCCC
1 TTTAACGTCCC
46021095 GTTGGACTTC
Statistics
Matches: 47, Mismatches: 16, Indels: 3
0.71 0.24 0.05
Matches are distributed among these distances:
27 46 0.98
28 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (27 bp):
TTTAACGTCCCATCAAACTATCTCGTG
Found at i:46026037 original size:63 final size:61
Alignment explanation
Indices: 46025914--46026094 Score: 215
Period size: 63 Copynumber: 2.9 Consensus size: 61
46025904 ACCCTTGGAA
* * *
46025914 AAGGTG-TGATGCAAGGAATGATTGTG-TGTTATGGTGCTTGTGTAAAATAAACTGGTGCTG
1 AAGGTGTTGATGCAAGGAATGATTGTGCTGTTGT-GTGCTTGTGTAAAATAAATTGGAGCTG
* * *
46025974 AATGTGTTGATGCAAGGAATGATTGTGCATGCTGTAGTGCTAGTGTAAAATAAATTGGAGCTG
1 AAGGTGTTGATGCAAGGAATGATTGTGC-TGTTGT-GTGCTTGTGTAAAATAAATTGGAGCTG
* *
46026037 AAGGTTTTGAT-CTAAGGAATGATTGTGCGTGTTGTGATGCTTGTGTCAAATAAATTGG
1 AAGGTGTTGATGC-AAGGAATGATTGTGC-TGTTGTG-TGCTTGTGTAAAATAAATTGG
46026095 GCTAGAACCA
Statistics
Matches: 103, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
60 5 0.05
61 20 0.19
62 2 0.02
63 76 0.74
ACGTcount: A:0.28, C:0.07, G:0.31, T:0.34
Consensus pattern (61 bp):
AAGGTGTTGATGCAAGGAATGATTGTGCTGTTGTGTGCTTGTGTAAAATAAATTGGAGCTG
Found at i:46027413 original size:20 final size:20
Alignment explanation
Indices: 46027388--46027446 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
46027378 AAGCCATGTG
*
46027388 GCTCGGGACACGCCCGTGTA
1 GCTCGGGACACGCTCGTGTA
*
46027408 GCTCGGGACACGCTCGTGTG
1 GCTCGGGACACGCTCGTGTA
46027428 GCTCGGGACACGCTCGTGT
1 GCTCGGGACACGCTCGTGT
46027447 CCTCAGCCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.12, C:0.32, G:0.37, T:0.19
Consensus pattern (20 bp):
GCTCGGGACACGCTCGTGTA
Found at i:46029735 original size:39 final size:39
Alignment explanation
Indices: 46029691--46029836 Score: 247
Period size: 39 Copynumber: 3.7 Consensus size: 39
46029681 TCTTTAAGCA
*
46029691 CGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTC
1 CGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTC
46029730 CGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTC
1 CGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTC
* * *
46029769 CAGATACAATTCCAGCACGAAGCCTACAGACCTTAAGTC
1 CGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTC
*
46029808 CGGATACAATTCCAGCACAAAGCCTGCGG
1 CGGATACAATTCCAGCACGAAGCCTGCGG
46029837 GACTTTAGCC
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.31, C:0.30, G:0.21, T:0.18
Consensus pattern (39 bp):
CGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTC
Found at i:46029789 original size:78 final size:78
Alignment explanation
Indices: 46029644--46029836 Score: 253
Period size: 78 Copynumber: 2.5 Consensus size: 78
46029634 CTACGGGTCT
* * * * * * * *
46029644 TTAAGCCCGGATATAATTCTAGCATATAGCCTGCAGATCTTTAAG-CACGGATACAATTCCAGCA
1 TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGA-CCTTAAGTC-CAGATACAATTCCAGCA
* * *
46029708 CGAAGCTTGCGGACC
64 CGAAGCCTACAGACC
*
46029723 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCAGATACAATTCCAGCACG
1 TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCAGATACAATTCCAGCACG
46029788 AAGCCTACAGACC
66 AAGCCTACAGACC
46029801 TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGG
1 TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGG
46029837 GACTTTAGCC
Statistics
Matches: 100, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
78 69 0.69
79 31 0.31
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (78 bp):
TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCAGATACAATTCCAGCACG
AAGCCTACAGACC
Found at i:46029850 original size:39 final size:39
Alignment explanation
Indices: 46029626--46029852 Score: 213
Period size: 39 Copynumber: 5.8 Consensus size: 39
46029616 CAATCACCAA
* ** * *
46029626 CACAAAGCCTACGGGTCTTTAAGCCCGGATATAATTCTAG
1 CACAAAGCCTGCGGACCTTT-AGCCCGGATACAATTCCAG
* * * * *
46029666 CATATAGCCTGCAGATCTTTAAGCACGGATACAATTCCAG
1 CACAAAGCCTGCGGACCTTT-AGCCCGGATACAATTCCAG
* * * *
46029706 CACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAG
1 CACAAAGCCTGCGGACCTTTAGCCCGGATACAATTCCAG
* * * *
46029745 CACGAAGCCTGCGGACCTTAAGTCCAGATACAATTCCAG
1 CACAAAGCCTGCGGACCTTTAGCCCGGATACAATTCCAG
* * * * *
46029784 CACGAAGCCTACAGACCTTAAGTCCGGATACAATTCCAG
1 CACAAAGCCTGCGGACCTTTAGCCCGGATACAATTCCAG
46029823 CACAAAGCCTGCGGGA-CTTTAGCCCGGATA
1 CACAAAGCCTGC-GGACCTTTAGCCCGGATA
46029853 TAACATCAGC
Statistics
Matches: 159, Mismatches: 27, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 112 0.70
40 47 0.30
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (39 bp):
CACAAAGCCTGCGGACCTTTAGCCCGGATACAATTCCAG
Found at i:46029863 original size:39 final size:39
Alignment explanation
Indices: 46029819--46029938 Score: 172
Period size: 39 Copynumber: 3.1 Consensus size: 39
46029809 GGATACAATT
* *
46029819 CCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACA
* *
46029858 TCAGCACGAATGCCTTCAGGG-CTTAGCCCAGATATAACA
1 CCAGCACGAATGCCTTC-GGGACTTAGCCCGGATATAACA
46029897 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
46029936 CCA
1 CCA
46029939 TTATAAAGTC
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
38 3 0.04
39 58 0.81
40 8 0.11
41 3 0.04
ACGTcount: A:0.30, C:0.31, G:0.22, T:0.17
Consensus pattern (39 bp):
CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
Found at i:46029863 original size:78 final size:79
Alignment explanation
Indices: 46029644--46029935 Score: 238
Period size: 78 Copynumber: 3.7 Consensus size: 79
46029634 CTACGGGTCT
* * * * * * * * *
46029644 TTAAGCCCGGATATAATTCTAGCATATAGCCTGC-AGATCTTTAAGCACGGATACAA-TTCCAGC
1 TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGA-CTTT-AGCCCGGATATAACATCCAGC
* * *
46029707 ACGAAGCTTGCGGACC
64 ACGAAGCCTACAGACC
* * * * * *
46029723 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-GGACCTTAAGTCCAGATACAA-TTCCAGCA
1 TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGA-CTTTAGCCCGGATATAACATCCAGCA
46029786 CGAAGCCTACAGACC
65 CGAAGCCTACAGACC
46029801 TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACAT-CAGCAC
1 TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACATCCAGCAC
* **
46029865 GAATGCCTTCAGGGC
66 GAA-GCCTACAGACC
* * * ** * *
46029880 TT-AGCCCAGATATAACACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACA
1 TTAAGTCCGGATACAATTCCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACA
46029936 CCATTATAAA
Statistics
Matches: 178, Mismatches: 31, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
78 119 0.67
79 59 0.33
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (79 bp):
TTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACATCCAGCAC
GAAGCCTACAGACC
Found at i:46029890 original size:117 final size:118
Alignment explanation
Indices: 46029691--46029911 Score: 263
Period size: 117 Copynumber: 1.9 Consensus size: 118
46029681 TCTTTAAGCA
* * * *
46029691 CGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTG
1 CGGATACAATTCCAGCACAAAGCCTGCGGACCTTAAGCCCGGATACAAATCCAGCACGAAGCCTG
* **
46029756 CGGACCTTAAGTCCAGATACAATTCCAGCACGAA-GCCTACAGACCTTAAGTC
66 CGGACCTTAAGCCCAGATACAACACCAGCACGAATGCCTACAGACCTTAAGTC
* *
46029808 CGGATACAATTCCAGCACAAAGCCTGCGGGA-CTTTAGCCCGGATATAACAT-CAGCACGAATGC
1 CGGATACAATTCCAGCACAAAGCCTGC-GGACCTTAAGCCCGGATACAA-ATCCAGCACGAA-GC
* * *
46029871 CTTCAGG-GCTT-AGCCCAGATATAACACCAGCACGAATGCCT
63 CTGC-GGACCTTAAGCCCAGATACAACACCAGCACGAATGCCT
46029912 TCGGGACTTA
Statistics
Matches: 87, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
117 69 0.79
118 16 0.18
119 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.21, T:0.19
Consensus pattern (118 bp):
CGGATACAATTCCAGCACAAAGCCTGCGGACCTTAAGCCCGGATACAAATCCAGCACGAAGCCTG
CGGACCTTAAGCCCAGATACAACACCAGCACGAATGCCTACAGACCTTAAGTC
Found at i:46030044 original size:28 final size:28
Alignment explanation
Indices: 46030011--46030083 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
46030001 ATTTAATCAT
*
46030011 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGTCATTC
* *
46030039 TCAATATCTCGCACATTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGTCATTC
*
46030067 TCAATATTTCGTACACT
1 TCAATATTTCGCACACT
46030084 GAGTACCATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGTCATTC
Found at i:46035545 original size:12 final size:12
Alignment explanation
Indices: 46035528--46035553 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46035518 ACCAACAAAG
46035528 AAGTAAATAAAT
1 AAGTAAATAAAT
46035540 AAGTAAATAAAT
1 AAGTAAATAAAT
46035552 AA
1 AA
46035554 AACTAAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (12 bp):
AAGTAAATAAAT
Found at i:46037545 original size:23 final size:23
Alignment explanation
Indices: 46037482--46037546 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
46037472 AGGCAAATTA
* * *
46037482 TTTGTGAAGCCTCTGTGACGTAT
1 TTTGTGAAGCCTTTGTGGCATAT
*
46037505 TCTGTGAAGCCTTTGTGGCATAT
1 TTTGTGAAGCCTTTGTGGCATAT
*
46037528 TTTGTAAAGCCTTTGTGGC
1 TTTGTGAAGCCTTTGTGGC
46037547 TTACTCTGTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.17, C:0.17, G:0.26, T:0.40
Consensus pattern (23 bp):
TTTGTGAAGCCTTTGTGGCATAT
Found at i:46037556 original size:23 final size:23
Alignment explanation
Indices: 46037505--46037557 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
46037495 TGTGACGTAT
* *
46037505 TCTGTGAAGCCTTTGTGGCATAT
1 TCTGTAAAGCCTTTGTGGCATAC
* *
46037528 TTTGTAAAGCCTTTGTGGCTTAC
1 TCTGTAAAGCCTTTGTGGCATAC
46037551 TCTGTAA
1 TCTGTAA
46037558 CGTCTAAATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.42
Consensus pattern (23 bp):
TCTGTAAAGCCTTTGTGGCATAC
Found at i:46039173 original size:20 final size:21
Alignment explanation
Indices: 46039148--46039186 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
46039138 GAAAAATAAT
*
46039148 AAAATAAAA-CTAAATTTAAC
1 AAAATAAAATATAAATTTAAC
46039168 AAAATAAAATATAAATTTA
1 AAAATAAAATATAAATTTA
46039187 TATATATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAATAAAATATAAATTTAAC
Found at i:46042028 original size:14 final size:15
Alignment explanation
Indices: 46041995--46042030 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
46041985 GGATTATATT
46041995 ATTACAAAAGGAAAG
1 ATTACAAAAGGAAAG
*
46042010 TTTACAAAA-GAAAG
1 ATTACAAAAGGAAAG
46042024 ATTACAA
1 ATTACAA
46042031 GGAGAGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.19
Consensus pattern (15 bp):
ATTACAAAAGGAAAG
Found at i:46044641 original size:14 final size:14
Alignment explanation
Indices: 46044618--46044659 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
46044608 TTGAAATATC
46044618 TTCTTCTTGTAATCT
1 TTCTT-TTGTAATCT
*
46044633 TTCTTTTGTAAACT
1 TTCTTTTGTAATCT
46044647 TTCCTTTTGTAAT
1 TT-CTTTTGTAAT
46044660 AATATAATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.17, C:0.17, G:0.07, T:0.60
Consensus pattern (14 bp):
TTCTTTTGTAATCT
Found at i:46046983 original size:19 final size:19
Alignment explanation
Indices: 46046959--46046995 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
46046949 GAAAACCCAT
46046959 ATTTCTGAACAAAGAGCTA
1 ATTTCTGAACAAAGAGCTA
46046978 ATTTCTGAACAAAGAGCT
1 ATTTCTGAACAAAGAGCT
46046996 CTTACAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (19 bp):
ATTTCTGAACAAAGAGCTA
Found at i:46048600 original size:12 final size:11
Alignment explanation
Indices: 46048572--46048602 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
46048562 AATTTTAATT
46048572 TTTTTAATAAA
1 TTTTTAATAAA
46048583 TTTTTAATAAA
1 TTTTTAATAAA
46048594 TTATTTAAT
1 TT-TTTAAT
46048603 CCAATTGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.68
12 6 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTTAATAAA
Found at i:46048655 original size:17 final size:17
Alignment explanation
Indices: 46048633--46048666 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
46048623 AACCAATTAG
46048633 TCTTTCTAAATAAGGCC
1 TCTTTCTAAATAAGGCC
46048650 TCTTTCTAAATAAGGCC
1 TCTTTCTAAATAAGGCC
46048667 ACGAGACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (17 bp):
TCTTTCTAAATAAGGCC
Found at i:46052240 original size:119 final size:115
Alignment explanation
Indices: 46051891--46052319 Score: 311
Period size: 119 Copynumber: 3.7 Consensus size: 115
46051881 AGAGACATCT
* * * * * *
46051891 CAAACAATGCTACCTTATCTCAAAATCATAAATTTCAAATCTTTACACTTTGAAGTAACAATAAA
1 CAAACACTGGTACCTTATGTCAAAATCATAAA-TTCAAATATTTACATTTTAAAGTAACAATAAA
* * * * * * * *
46051956 AGGAATTTA-TCATTGTACAGACACATATATGTCCTTGGTCTCACAGACACGGAC
65 TGCAA-TTAGTCATAGTACACACACACA-ACGT-CTTGGTCT-ACAGAGACAGAC
* * * *
46052010 CAAACATTGGTACCTTATGTCAAAATGATAAAATTCAAATATTTACATTTTACAGCAACAATAAA
1 CAAACACTGGTACCTTATGTCAAAATCAT-AAATTCAAATATTTACATTTTAAAGTAACAATAAA
* * * *
46052075 TGCAATTTGCCATAGAACACACA-AGCGAATCTGTCTCT-GTCT-CAGAGACAGAT
65 TGCAATTAGTCATAGTACACACACA-C-AA-C-GTCT-TGGTCTACAGAGACAGAC
* * *
46052128 CGAACCCTGGTACCTTATGTCAAAAACCATGAAATTCAAATATTTACATTTTAAAGTAACAATAA
1 CAAACACTGGTACCTTATGTC-AAAATCAT-AAATTCAAATATTTACATTTTAAAGTAACAATAA
* *
46052193 ATGCAATTAGTCATAGTACACAGACACACACGTCTTGGTCTAACAGAG--AGAT
64 ATGCAATTAGTCATAGTACACACACACA-ACGTCTTGGTCT-ACAGAGACAGAC
* * * * * * *
46052245 CAAATATTGGCT-CCTT-TG--AAAATAAAAAATTTCAAATATTTACATCTTAAATTGACAATAA
1 CAAACACTGG-TACCTTATGTCAAAATCATAAA-TTCAAATATTTACATTTTAAAGTAACAATAA
* *
46052306 ATGGAATTTGTCAT
64 ATGCAATTAGTCAT
46052320 GGTTCATGGA
Statistics
Matches: 250, Mismatches: 45, Indels: 36
0.76 0.14 0.11
Matches are distributed among these distances:
112 3 0.01
113 45 0.18
116 3 0.01
117 22 0.09
118 32 0.13
119 131 0.52
120 11 0.04
121 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (115 bp):
CAAACACTGGTACCTTATGTCAAAATCATAAATTCAAATATTTACATTTTAAAGTAACAATAAAT
GCAATTAGTCATAGTACACACACACAACGTCTTGGTCTACAGAGACAGAC
Found at i:46062730 original size:37 final size:37
Alignment explanation
Indices: 46062680--46062758 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
46062670 TTATTACGAA
* * * *
46062680 GTCTTACCCGGACATAATCTCCACACGAATTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
46062717 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
46062754 GTCTT
1 GTCTT
46062759 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:46062955 original size:47 final size:47
Alignment explanation
Indices: 46062879--46063537 Score: 1092
Period size: 47 Copynumber: 14.0 Consensus size: 47
46062869 CTTCGGGACT
* * * * * *
46062879 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
46062926 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
46062973 TATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
46063020 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
46063069 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
46063115 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
46063162 TATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
46063209 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
46063256 TATCACATATATACACTTTCACATTCATCAGATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
46063303 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
46063351 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
46063399 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
46063446 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
46063492 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
46063538 ATACTATCAT
Statistics
Matches: 583, Mismatches: 22, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
46 129 0.22
47 317 0.54
48 55 0.09
49 82 0.14
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:46063317 original size:236 final size:233
Alignment explanation
Indices: 46062879--46063537 Score: 1131
Period size: 236 Copynumber: 2.8 Consensus size: 233
46062869 CTTCGGGACT
* * * * * * *
46062879 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATACACTT
*
46062944 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGA
65 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
46063009 CCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCA
130 CCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCA
46063074 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
193 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
46063115 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATACACTT
* *
46063180 TCATATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCATCACATCGG
65 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
* *
46063245 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCAGATCGGCCATTAGGCCTTATCACA
130 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC-
46063310 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
194 -ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
46063351 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACT
46063416 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
64 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
46063481 GCCATTAGGCC-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
129 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
46063538 ATACTATCAT
Statistics
Matches: 403, Mismatches: 15, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
234 45 0.11
235 2 0.00
236 225 0.56
237 91 0.23
238 40 0.10
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (233 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAT
ATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:46063496 original size:283 final size:283
Alignment explanation
Indices: 46062877--46063537 Score: 1200
Period size: 283 Copynumber: 2.3 Consensus size: 283
46062867 CCCTTCGGGA
* * * * * * *
46062877 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
46062942 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
46063007 GACCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
131 GACCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
46063072 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCAC
196 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCAC
46063137 ATTCATCACATCGGCCATTAGGC
261 ATTCATCACATCGGCCATTAGGC
*
46063160 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
*
46063225 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAGATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
46063290 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTAT
131 GACCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
46063354 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTC
196 CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTC
46063419 ACATTCATCACATCGGCCATTAGGC
259 ACATTCATCACATCGGCCATTAGGC
46063444 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
46063508 TTTCACATTCATCACATCGGCCATTAGGCC
66 TTTCACATTCATCACATCGGCCATTAGGCC
46063538 ATACTATCAT
Statistics
Matches: 365, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
282 8 0.02
283 227 0.62
284 130 0.36
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (283 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GACCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCAC
ATTCATCACATCGGCCATTAGGC
Found at i:46068168 original size:51 final size:51
Alignment explanation
Indices: 46068092--46068192 Score: 193
Period size: 51 Copynumber: 2.0 Consensus size: 51
46068082 GATTTTTGCA
46068092 TATTATATGATTATGTCATATTGTAACTTAGATTAGTGAATTAGAAAAGGC
1 TATTATATGATTATGTCATATTGTAACTTAGATTAGTGAATTAGAAAAGGC
*
46068143 TATTATATGATTATGTCTTATTGTAACTTAGATTAGTGAATTAGAAAAGG
1 TATTATATGATTATGTCATATTGTAACTTAGATTAGTGAATTAGAAAAGG
46068193 TCAAATGGTT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.41
Consensus pattern (51 bp):
TATTATATGATTATGTCATATTGTAACTTAGATTAGTGAATTAGAAAAGGC
Found at i:46070206 original size:15 final size:15
Alignment explanation
Indices: 46070157--46070208 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 15
46070147 GCATTAATTA
46070157 TTTTTTAA-ATC-AT
1 TTTTTTAATATCTAT
*
46070170 TTCTTT-ATATCTAT
1 TTTTTTAATATCTAT
46070184 ATTATTTTAATATCTAT
1 -TT-TTTTAATATCTAT
46070201 TTTTTTAA
1 TTTTTTAA
46070209 AATATCGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
12 1 0.03
13 8 0.25
14 2 0.06
15 8 0.25
16 5 0.16
17 8 0.25
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTTTTAATATCTAT
Found at i:46072229 original size:29 final size:29
Alignment explanation
Indices: 46072187--46072245 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
46072177 TTGACTGTCT
46072187 TAATATTTATTATGTAGGG-TTTTCAATTA
1 TAATATTTATTATGT-GGGATTTTCAATTA
*
46072216 TAATATTTATTATGTGGGATTTTTAATTA
1 TAATATTTATTATGTGGGATTTTCAATTA
46072245 T
1 T
46072246 GTTTCTTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 3 0.11
29 25 0.89
ACGTcount: A:0.31, C:0.02, G:0.14, T:0.54
Consensus pattern (29 bp):
TAATATTTATTATGTGGGATTTTCAATTA
Found at i:46088201 original size:266 final size:266
Alignment explanation
Indices: 46087721--46088259 Score: 1060
Period size: 266 Copynumber: 2.0 Consensus size: 266
46087711 TGATGCTAAG
*
46087721 ATGTTCTGATATTTATTTATGTTGTGTTTATGTTTCATGTTTTGATGAGAAGAGACAGTGTCTAG
1 ATGTTTTGATATTTATTTATGTTGTGTTTATGTTTCATGTTTTGATGAGAAGAGACAGTGTCTAG
46087786 AGGGACGATGCTAGGACTACACTAAGGAAGAGGTGTATTGGGTTATTATACATGTATTGTAGGAT
66 AGGGACGATGCTAGGACTACACTAAGGAAGAGGTGTATTGGGTTATTATACATGTATTGTAGGAT
*
46087851 TTTACTTTAATGAATCTATAACTATTAGATGGTTGTTTTAAGAAAGATTTATTGTAATTTTTTTT
131 TTTACTTTAATGAATCTATAACTATCAGATGGTTGTTTTAAGAAAGATTTATTGTAATTTTTTTT
46087916 AATATTTTATGTTTAAGTACCATATTTGTTTCCTGAGATTTATTCTTTAAATCTAAAAAAAAAGA
196 AATATTTTATGTTTAAGTACCATATTTGTTTCCTGAGATTTATTCTTTAAATCTAAAAAAAAAGA
46087981 GAGAGT
261 GAGAGT
46087987 ATGTTTTGATATTTATTTATGTTGTGTTTATGTTTCATGTTTTGATGAGAAGAGACAGTGTCTAG
1 ATGTTTTGATATTTATTTATGTTGTGTTTATGTTTCATGTTTTGATGAGAAGAGACAGTGTCTAG
46088052 AGGGACGATGCTAGGACTACACTAAGGAAGAGGTGTATTGGGTTATTATACATGTATTGTAGGAT
66 AGGGACGATGCTAGGACTACACTAAGGAAGAGGTGTATTGGGTTATTATACATGTATTGTAGGAT
46088117 TTTACTTTAATGAATCTATAACTATCAGATGGTTGTTTTAAGAAAGATTTATTGTAATTTTTTTT
131 TTTACTTTAATGAATCTATAACTATCAGATGGTTGTTTTAAGAAAGATTTATTGTAATTTTTTTT
46088182 AATATTTTATGTTTAAGTACCATATTTGTTTCCTGAGATTTATTCTTTAAATCTAAAAAAAAAGA
196 AATATTTTATGTTTAAGTACCATATTTGTTTCCTGAGATTTATTCTTTAAATCTAAAAAAAAAGA
46088247 GAGAGT
261 GAGAGT
46088253 ATGTTTT
1 ATGTTTT
46088260 AAATAAGAGG
Statistics
Matches: 271, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
266 271 1.00
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (266 bp):
ATGTTTTGATATTTATTTATGTTGTGTTTATGTTTCATGTTTTGATGAGAAGAGACAGTGTCTAG
AGGGACGATGCTAGGACTACACTAAGGAAGAGGTGTATTGGGTTATTATACATGTATTGTAGGAT
TTTACTTTAATGAATCTATAACTATCAGATGGTTGTTTTAAGAAAGATTTATTGTAATTTTTTTT
AATATTTTATGTTTAAGTACCATATTTGTTTCCTGAGATTTATTCTTTAAATCTAAAAAAAAAGA
GAGAGT
Found at i:46091930 original size:20 final size:22
Alignment explanation
Indices: 46091890--46091930 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
46091880 TTTCTTTACT
*
46091890 TTTAGTTGATATTCTATTATTG
1 TTTAGTTGATATTCTAATATTG
46091912 TTTAGTTG-T-TTCTAATATT
1 TTTAGTTGATATTCTAATATT
46091931 TTATTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 1 0.06
22 8 0.44
ACGTcount: A:0.22, C:0.05, G:0.12, T:0.61
Consensus pattern (22 bp):
TTTAGTTGATATTCTAATATTG
Found at i:46096889 original size:17 final size:15
Alignment explanation
Indices: 46096865--46096901 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
46096855 CAGGCCATGT
*
46096865 GTCACACATAACTGA
1 GTCACACACAACTGA
46096880 GTCACACACAACTGA
1 GTCACACACAACTGA
46096895 GTCACAC
1 GTCACAC
46096902 GCCCGTGTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.38, C:0.32, G:0.14, T:0.16
Consensus pattern (15 bp):
GTCACACACAACTGA
Found at i:46099132 original size:25 final size:25
Alignment explanation
Indices: 46099104--46099153 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
46099094 ACCATTCAAG
* *
46099104 AACATTCATGGTAAGTCCCTAAACA
1 AACATTCAAGGCAAGTCCCTAAACA
46099129 AACATTCAAGGCAAGTCCCTAAACA
1 AACATTCAAGGCAAGTCCCTAAACA
46099154 TTTAACATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.26, G:0.12, T:0.20
Consensus pattern (25 bp):
AACATTCAAGGCAAGTCCCTAAACA
Found at i:46101820 original size:24 final size:25
Alignment explanation
Indices: 46101793--46101844 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
46101783 GCCTAGCCTC
46101793 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
46101817 TTTTAGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
46101842 TTT
1 TTT
46101845 CGCACTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:46101919 original size:21 final size:21
Alignment explanation
Indices: 46101892--46101952 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
46101882 TATAATGAGT
46101892 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
46101913 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
46101934 ATATTAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
46101953 ATAAAAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:46101946 original size:10 final size:11
Alignment explanation
Indices: 46101878--46101952 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
46101868 ACCCAAACCA
*
46101878 TGCATATAATG
1 TGCATATCATG
* *
46101889 AGTATATCAT-
1 TGCATATCATG
*
46101899 AGCATATCATG
1 TGCATATCATG
*
46101910 TGCATCTCAT-
1 TGCATATCATG
**
46101920 AACATATCATG
1 TGCATATCATG
*
46101931 TGCATATTATG
1 TGCATATCATG
46101942 T-CATATCATG
1 TGCATATCATG
46101952 T
1 T
46101953 ATAAAAATAT
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
10 25 0.51
11 24 0.49
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (11 bp):
TGCATATCATG
Found at i:46104340 original size:47 final size:46
Alignment explanation
Indices: 46104274--46104429 Score: 172
Period size: 47 Copynumber: 3.3 Consensus size: 46
46104264 ATTGTGGGCT
46104274 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-TATGAGAGCC
* * * * *
46104320 AGTGTAAGACTATGTCTGGGACATGGCATCAG-CATCGAAACGAGTGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCA-CGATATGAGAGCC
* * * *
46104368 AGTGTAAGACATGTCTGGTACATGCATCGGCTACGATATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATATGAGAGCC
46104414 AGTGTAAGACCATGTC
1 AGTGTAAGA-CATGTC
46104430 CTGGATATGG
Statistics
Matches: 90, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
46 32 0.36
47 34 0.38
48 23 0.26
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATATGAGAGCC
Found at i:46104440 original size:94 final size:94
Alignment explanation
Indices: 46104271--46104443 Score: 260
Period size: 94 Copynumber: 1.8 Consensus size: 94
46104261 GTTATTGTGG
*
46104271 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACTATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
46104336 TGGGACATGGCATCAGCATCGAAACGAGT
66 TGGGACATGGCATCAGCATCGAAACGAGT
* * * *
46104365 GCTAGTGTAAGACATGTCTGGTACATGCATCGGCTACGA-TATGATAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATGT
*
46104429 CCT-GGATATGGCATC
65 -CTGGGACATGGCATC
46104444 GACTTGAGAT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
94 68 0.96
95 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCAGCATCGAAACGAGT
Found at i:46104477 original size:94 final size:93
Alignment explanation
Indices: 46104274--46104491 Score: 239
Period size: 94 Copynumber: 2.3 Consensus size: 93
46104264 ATTGTGGGCT
*
46104274 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACTATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
*
46104339 GACATGGCATCAGCATCGAAACGAGTGCT
66 GACATGGCATCAGCATCGAAACGAG-GCA
* * * *
46104368 AGTGTAAGACATGTCTGGTACATGCATCGGCTACGA-TATGATAGTCAGTGTAAGACCATGTCCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATGT-CT
* * *
46104432 -GGATATGGCATC-G-ACTTGAGATATGA-GCA
64 GGGACATGGCATCAGCA-TCGA-A-ACGAGGCA
*
46104461 AGTGTAAGACTGTGTCTGGGACATGGCATCG
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCG
46104492 ACATCCTACC
Statistics
Matches: 106, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
92 1 0.01
93 16 0.15
94 77 0.73
95 12 0.11
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAGCATCGAAACGAGGCA
Found at i:46106194 original size:43 final size:42
Alignment explanation
Indices: 46106118--46106288 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 42
46106108 ATAGGATTTC
* * *
46106118 CGATATGTGATCTCTGTAAGACCAGGT-TCGGGACATTGGCAT
1 CGATATGTGATTTCAGTAAGACCATGTCT-GGGACATTGGCAT
* *
46106160 CGATATGTGATTTCGAGTAAGACCATGTCTGGGACATCGACAT
1 CGATATGTGATTTC-AGTAAGACCATGTCTGGGACATTGGCAT
* * * *
46106203 CG-TAATTGTGA-TTCGTGTAAGACCCTGTCTGGGATAGTGGCAT
1 CGAT-A-TGTGATTTC-AGTAAGACCATGTCTGGGACATTGGCAT
* * * *
46106246 CGACATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGATTTCA-GTAAGACCATGTCTGGGACATTGGCAT
46106289 TGTACGATAT
Statistics
Matches: 103, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
42 19 0.18
43 78 0.76
44 6 0.06
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (42 bp):
CGATATGTGATTTCAGTAAGACCATGTCTGGGACATTGGCAT
Found at i:46111923 original size:14 final size:14
Alignment explanation
Indices: 46111904--46111933 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
46111894 GTGTTTATTT
*
46111904 TGTGTGAATTTTCA
1 TGTGTGAAATTTCA
46111918 TGTGTGAAATTTCA
1 TGTGTGAAATTTCA
46111932 TG
1 TG
46111934 AATTAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.07, G:0.23, T:0.47
Consensus pattern (14 bp):
TGTGTGAAATTTCA
Found at i:46114092 original size:92 final size:93
Alignment explanation
Indices: 46113986--46114155 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
46113976 GCCCCTAAGT
*
46113986 GAACTCGGACTCAACTCAACGAGCTCGCACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGCACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
46114051 -GAGTTCAGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
* *
46114078 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGCACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
46114143 CGAGTTCGGATGC
66 CGAGTTCAGATGC
46114156 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 62 0.85
93 11 0.15
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGCACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:46114151 original size:46 final size:46
Alignment explanation
Indices: 46113981--46114152 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
46113971 AACCCGCCCC
* * *
46113981 TAAGTGAACTCGGACTCAACTCAACGAGCTCGCACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
46114027 TAAGTGAACTCGGACTCAACTCAA-GAGTTCAGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCGCATCCA
* *
46114074 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
46114119 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
46114153 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 7 0.07
46 74 0.72
47 8 0.08
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:46116488 original size:3 final size:3
Alignment explanation
Indices: 46116480--46116538 Score: 100
Period size: 3 Copynumber: 19.3 Consensus size: 3
46116470 CCTTTTGTTT
*
46116480 TTC TTC TTC TTC TTC TTTC TTC TTT TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
46116526 TTC TTC TTC TTC T
1 TTC TTC TTC TTC T
46116539 ATTTCATCAT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
3 50 0.94
4 3 0.06
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:46169655 original size:46 final size:46
Alignment explanation
Indices: 46169605--46169777 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
46169595 TGGTTGAGCA
46169605 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
46169651 TCCGAACTCGTTGAGTTGAGACCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
46169696 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
46169744 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
46169778 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 58 0.56
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:46169761 original size:93 final size:93
Alignment explanation
Indices: 46169602--46169772 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
46169592 GGATGGTTGA
*
46169602 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
46169667 TGAGACCGAGTTCGTGAAATGTAACTAG
66 TGAGACCGAGTTCGTGAAATGTAACTAG
* *
46169695 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGAG
*
46169759 TTGAGTCCGAGTTC
65 TTGAGACCGAGTTC
46169773 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGACCGAGTTCGTGAAATGTAACTAG
Found at i:46192965 original size:140 final size:140
Alignment explanation
Indices: 46192713--46193200 Score: 870
Period size: 140 Copynumber: 3.5 Consensus size: 140
46192703 GGAAACTCAA
**
46192713 CTCATATTGCGAGAGACGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
46192778 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTAGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
46192843 TCAAAATCAG
131 TCAAAATCAG
*
46192853 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
46192918 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
46192983 TCAAAATCAG
131 TCAAAATCAG
46192993 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
46193058 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
46193123 TCAAAATCAG
131 TCAAAATCAG
*
46193133 CTCATATTACGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
46193197 TCAA
62 TCAA
46193201 AAAAAAAATT
Statistics
Matches: 335, Mismatches: 9, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
139 2 0.01
140 304 0.91
142 23 0.07
143 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:46193056 original size:13 final size:13
Alignment explanation
Indices: 46193038--46193071 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
46193028 CGCTGAGGTA
*
46193038 TTTTCAATTTCTG
1 TTTTCAATTTATG
46193051 TTTTCAATTTATG
1 TTTTCAATTTATG
46193064 TTGTTCAA
1 TT-TTCAA
46193072 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:46193318 original size:72 final size:72
Alignment explanation
Indices: 46193205--46193345 Score: 282
Period size: 72 Copynumber: 2.0 Consensus size: 72
46193195 TTTCAAAAAA
46193205 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
46193270 TGTTTTC
66 TGTTTTC
46193277 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
46193342 TGTT
66 TGTT
46193346 CAAAATGAGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:46193356 original size:49 final size:49
Alignment explanation
Indices: 46193299--46193394 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
46193289 ATATTGCGAG
*
46193299 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
*
46193348 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTTAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
46193395 TTCAAAATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:46193441 original size:121 final size:121
Alignment explanation
Indices: 46193227--46193466 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
46193217 ATATTGCGAG
*
46193227 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
46193292 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
*
46193348 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTTAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
46193413 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
46193467 TTTCAAAAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:46193599 original size:75 final size:75
Alignment explanation
Indices: 46193348--46193700 Score: 464
Period size: 77 Copynumber: 4.7 Consensus size: 75
46193338 TTTCTGTTCA
* *
46193348 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTT-AATTTCTG-TTTTC--AAAATTCAACT
1 AAATGAGTTGAGCCTCAAGACATGCTGAGGT-ATTTTCAATTTCTGTTTTTCAAAAAAATCAACT
46193409 CATATTGCGAG
65 CATATTGCGAG
*
46193420 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAATCAAC
1 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTC--AAAAAAATCAAC
*
46193485 TCATATTGTGAG
64 TCATATTGCGAG
46193497 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
46193562 ATATTGCGAG
66 ATATTGCGAG
** * * * *
46193572 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* *
46193636 GTATTGTGAG
66 ATATTGCGAG
*** * * *
46193646 AGGCGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTCAATTTTTGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACATGCTGAGGTATTTTCAATTTCTGTTTTTCAA
46193701 TTTCCGCCTT
Statistics
Matches: 252, Mismatches: 20, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
71 5 0.02
72 37 0.15
73 5 0.02
74 44 0.17
75 63 0.25
76 22 0.09
77 76 0.30
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:46193641 original size:149 final size:149
Alignment explanation
Indices: 46193348--46194076 Score: 538
Period size: 149 Copynumber: 4.6 Consensus size: 149
46193338 TTTCTGTTCA
*
46193348 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTT-AATTTCTG-TTTTC--AAAATTCAACT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAATTTCTGTTTTTCAAAAAAATCAACT
** * * *
46193409 CATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAA
65 CATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG-TTTTC--A
46193474 AAAAAATCAACTCATATTGTGAG
127 AAAAAATCAACTCATATTGTGAG
*
46193497 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
* *
46193562 ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
66 ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAA
*
46193627 AATCAACTCGTATTGTGAG
131 AATCAACTCATATTGTGAG
*** * * * *
46193646 AGGCGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTCAATTTTTGTTTTTCAATTTCCGCCTT
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTG---------TT-----TT
* * * *
46193711 TCAAAAAAAAATCAACTCATATTGCGAGAGGTGAG-TAAGCCT-TGGCTCACGCGCTGAGCTATT
50 TC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATT
* *
46193774 TTCAATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAG
110 TTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGTGAG
** * * * * *
46193815 AGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCA
1 AAATGAGTTGAGCCTCA-A-GACACGCTGAGGTA--TTTTCAATTTCTGTTTTTCAAAAAAATCA
* * * * **
46193880 ACTCACATTGCGAGATGTGAGTTGAGCCTCTAGTCACATG-TCGAGGTATTTTCAAAATCTGTTT
62 ACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCT-GAGGTATTTTCAATTTCTG-TT
*
46193944 TTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAG
123 TTCA-A----------AAAAATCAACTCATATTGTGAG
* ** * *
46193982 AAGTGAGTTGAGCCT-TGGCTCACGTACTGAGCTATTTTCAATTTCTGTTTTTTTTTCAAAAAAA
1 AAATGAGTTGAGCCTCAAG-ACACG--CTGAGGTATTTTCAATTTCTG----TTTTTCAAAAAAA
*
46194046 TTCAACTTATATTGCGAGAGGTGAGTTGAGC
59 -TCAACTCATATTGCGAGAGGTGAGTTGAGC
46194077 TTTTTAATTT
Statistics
Matches: 467, Mismatches: 58, Indels: 89
0.76 0.09 0.14
Matches are distributed among these distances:
148 5 0.01
149 76 0.16
150 5 0.01
151 28 0.06
152 60 0.13
155 30 0.06
156 29 0.06
157 6 0.01
158 1 0.00
160 2 0.00
162 2 0.00
165 20 0.04
166 6 0.01
167 73 0.16
168 24 0.05
169 62 0.13
170 27 0.06
171 11 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (149 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAA
AATCAACTCATATTGTGAG
Found at i:46193851 original size:169 final size:168
Alignment explanation
Indices: 46193548--46193871 Score: 429
Period size: 169 Copynumber: 1.9 Consensus size: 168
46193538 TCTGTTTTTC
* *
46193548 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGCTAATTTCAATT
* * * * **
46193613 TCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACATGCCGAGG
66 TCTGTTGTAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACACCGAGG
* *
46193678 TA-TTTTCAATTTTTGTTTTTCAATTTCCGCCTTTCAA
131 TATTTTTCAATTTATATTTTTCAATTTCCGCCTTTCAA
* * *
46193715 AAAAAAATCAACTCATATTGCGAGAGGTGAG-TAAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG---ACACGCTGAGCTAATTTCA
* * * *
46193778 ATTTCTGTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACT
63 ATTTCTGT-TGTAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACACC
46193843 GAGGTATTTTTTCAATTTATATTTTTCAA
127 GAGGTA-TTTTTCAATTTATATTTTTCAA
46193872 AAAAATCAAC
Statistics
Matches: 134, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
165 2 0.01
166 6 0.04
167 31 0.23
168 24 0.18
169 52 0.39
171 19 0.14
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (168 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGCTAATTTCAATT
TCTGTTGTAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACACCGAGG
TATTTTTCAATTTATATTTTTCAATTTCCGCCTTTCAA
Found at i:46193917 original size:79 final size:78
Alignment explanation
Indices: 46193714--46193917 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 78
46193704 CCGCCTTTCA
* * * * *
46193714 AAAAAAAATCAACTCATATTGCGAGAGGTGAG-TAAGCCT-TGGCTCACGCGCTGAGCTATTTTC
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTAGATCACACACTGAGCTATTTTC
* *
46193777 AATTTCTGTCTTT
66 AATTTATATCTTT
* *
46193790 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC-AGATCACACACTGAGGTATTTTT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTAGATCACACACTGAGCTA--TTT
*
46193854 TCAATTTATATTTTT
64 TCAATTTATATCTTT
* * *
46193869 CAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCTAG-TCACA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTAGATCACA
46193918 TGTCGAGGTA
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
76 32 0.29
77 18 0.17
79 57 0.52
80 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (78 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTAGATCACACACTGAGCTATTTTC
AATTTATATCTTT
Found at i:46194021 original size:88 final size:87
Alignment explanation
Indices: 46193872--46194033 Score: 220
Period size: 88 Copynumber: 1.8 Consensus size: 87
46193862 TATTTTTCAA
* *
46193872 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCTAGTCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCTAGTCACA-GTCGAGCTATTTTCAAAA
46193937 TCTGTTTTTCAGATTCTGTTTTC
65 TCTGTTTTTCAGATTCTGTTTTC
* *
46193960 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCAC-GTACTGAGCTATTTTCAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCTAG-TCACAGT-C-GAGCTATTTTCAA
**
46194023 TTTCTGTTTTT
63 AATCTGTTTTT
46194034 TTTTCAAAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
86 2 0.03
87 3 0.05
88 60 0.92
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCTAGTCACAGTCGAGCTATTTTCAAAAT
CTGTTTTTCAGATTCTGTTTTC
Found at i:46194094 original size:30 final size:30
Alignment explanation
Indices: 46194058--46194119 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
46194048 CAACTTATAT
46194058 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
46194088 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
46194118 TG
1 TG
46194120 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:46194171 original size:254 final size:246
Alignment explanation
Indices: 46193474--46194287 Score: 862
Period size: 254 Copynumber: 3.3 Consensus size: 246
46193464 GTTTTTCAAA
* ** ** * *
46193474 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTTCAA
* *
46193536 TTTCTGTTTTTC----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACAC
65 TTTCTGTTTTTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
* * * * * * * *
46193595 GCTGAGGTA--ATTTCAATTTCT-GTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGA
130 ACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* ** * * *
46193657 GCCTCAGGTCACATGCCGAGGTATTTTCAATTTTTGTTTTTCAATTTCCGCCTTTC
194 GCCTCA-GTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCAG--TTTC
* *
46193713 AAAAAAAAATCAACTCATATTGCGAGAGGTGAG-TAAGCCTTGGCTCACGCGCTGAGCTATTTTC
1 ---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTC
46193777 AATTTCTG----TCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
63 AATTTCTGTTTTTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
* * *
46193838 ACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTT
128 ACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
46193903 GAGCCTCTAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTC-AGATTCTGTTTTC
192 GAGCCTC-AGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAG-TTCAG-TTTC
* *
46193960 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTACTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
* * * *
46194024 TTCTGTTTTTTTTTCAAAAAAATTCAACTTATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTC
66 TTCTGTTTTTCTTT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC
* * * * * *
46194088 TGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGG
126 -AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAGAGG
* * * *
46194151 TGAGTTGAACCTTCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC
186 TGAGTTGAGCC-TCAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCAGTTTC
46194213 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
46194278 TTCTGTTTTT
66 TTCTGTTTTT
46194288 AATGTATATT
Statistics
Matches: 488, Mismatches: 52, Indels: 52
0.82 0.09 0.09
Matches are distributed among these distances:
239 2 0.00
241 5 0.01
242 28 0.06
243 92 0.19
244 37 0.08
245 12 0.02
247 15 0.03
248 78 0.16
249 37 0.08
250 1 0.00
251 3 0.01
252 2 0.00
253 5 0.01
254 144 0.30
255 9 0.02
256 13 0.03
257 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (246 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTGTTTTTCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACA
CTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCAGTTTC
Found at i:46197810 original size:26 final size:26
Alignment explanation
Indices: 46197781--46197830 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
46197771 CAGTGACTGG
46197781 TTTGACCAACTAATTCTAATAACTAA
1 TTTGACCAACTAATTCTAATAACTAA
* *
46197807 TTTGACCAACTGATTCTATTAACT
1 TTTGACCAACTAATTCTAATAACT
46197831 GTTTATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.36, C:0.20, G:0.06, T:0.38
Consensus pattern (26 bp):
TTTGACCAACTAATTCTAATAACTAA
Found at i:46206107 original size:18 final size:18
Alignment explanation
Indices: 46206084--46206127 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
46206074 AATTTATATG
**
46206084 AAAATCCTTGAAGAATTT
1 AAAATCCTAAAAGAATTT
*
46206102 AAAATCCCAAAAGAATTT
1 AAAATCCTAAAAGAATTT
46206120 AAAATCCT
1 AAAATCCT
46206128 CGAATGATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.16, G:0.07, T:0.27
Consensus pattern (18 bp):
AAAATCCTAAAAGAATTT
Found at i:46213562 original size:94 final size:92
Alignment explanation
Indices: 46213400--46213756 Score: 307
Period size: 94 Copynumber: 3.8 Consensus size: 92
46213390 TTTGTGCGCC
* ** * * * * * *
46213400 AGTGTAAGACATGTCTGGGACATGTTTCAGCCACATTATGAGAACCAGTATAAGACCATGTCTAG
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCATACTATAAGAGCCAGTGTAAGACCATGTCTGG
*
46213465 GACATGACATCGGCATCCAGACGAGGGCT
66 GACATGGCATCGGCAT-CAGA-GAGGGCT
*
46213494 AGTGTAAGACATGTCT-GGAACATGCATCAGCCATACTATAATAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTAGG-ACATGCATCAGCCATACTATAAGAGCCAGTGTAAGACCATGTCTG
* **
46213558 GGACATGGCATCGG-AACAGAGATGAGTAT
65 GGACATGGCATCGGCATCAGAGA-G-GGCT
* * * *
46213587 CAGTGTAAGACATGTCTAGGACATGCATCAGCC-TCGAC-AGAGATAGCCAGTGTAA-AACGTGT
1 -AGTGTAAGACATGTCTAGGACATGCATCAGCCAT--ACTATA-AGAGCCAGTGTAAGACCATGT
* * * * *
46213649 TTGGGACA-CGCATCGGC-TAAGAGTTGTGCT
62 CTGGGACATGGCATCGGCATCAGAG-AGGGCT
* * *
46213679 AGTGTAAGACATGTCTAGGACATGCATCAACACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTAGGACATGCATC-A-GC-CATACTATAAGAGCCAGTGTAAGACCATGTC
46213743 TGGGACATGGCATC
63 TGGGACATGGCATC
46213757 AACAATGTAT
Statistics
Matches: 214, Mismatches: 32, Indels: 34
0.76 0.11 0.12
Matches are distributed among these distances:
91 30 0.14
92 19 0.09
93 33 0.15
94 114 0.53
95 18 0.08
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (92 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCCATACTATAAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAGAGAGGGCT
Found at i:46213638 original size:47 final size:46
Alignment explanation
Indices: 46213397--46213757 Score: 195
Period size: 47 Copynumber: 7.7 Consensus size: 46
46213387 TGATTTGTGC
** * *
46213397 GCCAGTGTAAGACATGTCTGGGACATGTTTCAGCCACATTATGAGA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCA-CA-GAGATA
* * * * **
46213444 -CCAGTATAAGACCATGTCTAGGACATGACATCGGCATC-CAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATCAGCCTCACAGA-GATA
* * *
46213491 GCTAGTGTAAGACATGTCTGGAACATGCATCAGCCAT-ACTATA-ATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCC-TCAC-AGAGATA
**
46213537 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--GAACAGAGATGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCACAGAGAT-A
* *
46213583 GTATCAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGACAGAGATA
1 G--CCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC-ACAGAGATA
* * * * * * *
46213632 GCCAGTGTAAAACGTGTTTGGGACACGCATC-GGCT-A-AGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCACAGAGAT-A
* * * * ** * *
46213676 GCTAGTGTAAGACATGTCTAGGACATGCATCAACACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC-CTCACAGA-GATA
46213724 GCCAGTGTAAGACCATGTCTGGGACATGGCATCA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCA
46213758 ACAATGTATC
Statistics
Matches: 236, Mismatches: 51, Indels: 51
0.70 0.15 0.15
Matches are distributed among these distances:
43 5 0.02
44 28 0.12
45 6 0.03
46 42 0.18
47 81 0.34
48 44 0.19
49 16 0.07
50 14 0.06
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCACAGAGATA
Found at i:46215599 original size:40 final size:40
Alignment explanation
Indices: 46215491--46215621 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 40
46215481 TCTTCGGAAT
* * *
46215491 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
* * * * * *
46215530 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
* * *
46215570 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
*
46215610 TTCGCCCGGATA
1 TTAGCCCGGATA
46215622 TCATTCAAAT
Statistics
Matches: 74, Mismatches: 17, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
39 3 0.04
40 71 0.96
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
Found at i:46240028 original size:14 final size:14
Alignment explanation
Indices: 46240004--46240042 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
46239994 CAAAATGTAC
46240004 AATAT-AATTAAAT
1 AATATAAATTAAAT
46240017 AATATAAATTAAAT
1 AATATAAATTAAAT
* *
46240031 AAAATAATTTAA
1 AATATAAATTAA
46240043 TTAACTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATATAAATTAAAT
Found at i:46242137 original size:31 final size:31
Alignment explanation
Indices: 46242102--46242162 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
46242092 ACCTTTATAG
46242102 AAAATTTACAATAACATTTAAAAATAATAAA
1 AAAATTTACAATAACATTTAAAAATAATAAA
46242133 AAAATTTACAATAACATTTAAAAATAATAA
1 AAAATTTACAATAACATTTAAAAATAATAA
46242163 TAAAGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.30
Consensus pattern (31 bp):
AAAATTTACAATAACATTTAAAAATAATAAA
Found at i:46242155 original size:19 final size:19
Alignment explanation
Indices: 46242102--46242155 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
46242092 ACCTTTATAG
46242102 AAAATTTACAATAACATTT
1 AAAATTTACAATAACATTT
*
46242121 AAAA---ATAATAA-A---
1 AAAATTTACAATAACATTT
46242133 AAAATTTACAATAACATTT
1 AAAATTTACAATAACATTT
46242152 AAAA
1 AAAA
46242156 ATAATAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 14
0.62 0.05 0.33
Matches are distributed among these distances:
12 4 0.15
15 7 0.27
16 7 0.27
19 8 0.31
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATTTACAATAACATTT
Found at i:46244929 original size:19 final size:19
Alignment explanation
Indices: 46244905--46244944 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
46244895 ATTGGTTTAG
*
46244905 TAAAATAATGTATAA-AATT
1 TAAAAT-ATGTAAAAGAATT
46244924 TAAAATATGTAAAAGAATT
1 TAAAATATGTAAAAGAATT
46244943 TA
1 TA
46244945 TATTTATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (19 bp):
TAAAATATGTAAAAGAATT
Found at i:46245164 original size:21 final size:20
Alignment explanation
Indices: 46245138--46245347 Score: 85
Period size: 21 Copynumber: 10.1 Consensus size: 20
46245128 TTTAATGATA
*
46245138 ATAATATATAGATAAAAAAGT
1 ATAATATATA-ATAAAAAAAT
46245159 ATAATA-AT-ATAAAAATGACAT
1 ATAATATATAATAAAAA--A-AT
*
46245180 AATAATATATAATAAAATAATT
1 -ATAATATATAATAAAA-AAAT
* *
46245202 ATAATATATAATATATATAAT
1 ATAATATATAATA-AAAAAAT
* * *
46245223 -TAATAAATATATAATACAAGT
1 ATAATATATA-ATAA-AAAAAT
* *
46245244 A-AAAATATAAT--AATAAT
1 ATAATATATAATAAAAAAAT
* *
46245261 AT-ATAAATAATAAACTAATAT
1 ATAATATATAATAAA--AAAAT
* *
46245282 ATAATAAATAATAATAATGTAA-
1 ATAATATATAATAA-AA--AAAT
46245304 ATAATATATAATAAAATAATTAT
1 ATAATATATAATAAAA-AA--AT
*
46245327 ATAATATATAATATAAAAAT
1 ATAATATATAATAAAAAAAT
46245347 A
1 A
46245348 AGGTTAAATA
Statistics
Matches: 141, Mismatches: 25, Indels: 47
0.66 0.12 0.22
Matches are distributed among these distances:
17 11 0.08
18 7 0.05
19 1 0.01
20 18 0.13
21 41 0.29
22 36 0.26
23 20 0.14
24 6 0.04
25 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.34
Consensus pattern (20 bp):
ATAATATATAATAAAAAAAT
Done.