Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 146 of 253
Found at i:46819218 original size:50 final size:47
Alignment explanation
Indices: 46819154--46819322 Score: 168
Period size: 48 Copynumber: 3.6 Consensus size: 47
46819144 CAAGGCCAAC
*
46819154 GCCATGTACCAGACATGGTCTTACACTAGCTCTCGTATATCCGTACCGAT
1 GCCATGTCCCAGACATGGTCTTACACT-GCTCTC-TATAT-CGTACCGAT
* * *
46819204 GCCATGTCCCAGACATAGTCTTACACTGACACCTCTATA-CGTATCGAT
1 GCCATGTCCCAGACATGGTCTTACACTG-C-TCTCTATATCGTACCGAT
* * * * *
46819252 ACCATGTCCCAAACATGGTCTTACACTG-ACAC-ATCTCGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGCTCTCTATATCGTA-CCGAT
46819298 G-CATGTCCCAGACAT-GTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
46819323 AGCTTACATC
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
44 12 0.12
45 19 0.19
46 4 0.04
48 33 0.32
49 1 0.01
50 30 0.29
51 3 0.03
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGCTCTCTATATCGTACCGAT
Found at i:46819343 original size:46 final size:45
Alignment explanation
Indices: 46819195--46819350 Score: 142
Period size: 48 Copynumber: 3.4 Consensus size: 45
46819185 CTCGTATATC
* * *
46819195 CGTA-CCGATGCCATGTCCCAGACATAGTCTTACACTGACACCTCTAT
1 CGTAGCCGATG-CATGTCCCAAACATGGTCTTACACTGACACATC--T
* *
46819242 ACGTA-TCGATACCATGTCCCAAACATGGTCTTACACTGACACATCT
1 -CGTAGCCGAT-GCATGTCCCAAACATGGTCTTACACTGACACATCT
*
46819288 CGTAGCCGATGCATGTCCCAGACAT-GTCTTACACT-AGCTTACATCT
1 CGTAGCCGATGCATGTCCCAAACATGGTCTTACACTGA-C--ACATCT
46819334 CG-AGGCCGATGCATGTC
1 CGTA-GCCGATGCATGTC
46819351 TTATACTAGC
Statistics
Matches: 94, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 11 0.12
45 18 0.19
46 26 0.28
48 38 0.40
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (45 bp):
CGTAGCCGATGCATGTCCCAAACATGGTCTTACACTGACACATCT
Found at i:46820964 original size:9 final size:9
Alignment explanation
Indices: 46820950--46821043 Score: 70
Period size: 9 Copynumber: 10.7 Consensus size: 9
46820940 GGGCGTTGCA
46820950 ACATAACTT
1 ACATAACTT
46820959 ACATAACTT
1 ACATAACTT
46820968 ACATAA--T
1 ACATAACTT
*
46820975 ACATAA-AT
1 ACATAACTT
* * *
46820983 ATATATCAT
1 ACATAACTT
46820992 ATCATAACTT
1 A-CATAACTT
46821002 ACATAACTT
1 ACATAACTT
*
46821011 ACATAA-AT
1 ACATAACTT
* * *
46821019 ATATATCAT
1 ACATAACTT
46821028 ATCATAACTT
1 A-CATAACTT
46821038 ACATAA
1 ACATAA
46821044 AACTTTGGAT
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
7 7 0.10
8 10 0.14
9 40 0.58
10 12 0.17
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (9 bp):
ACATAACTT
Found at i:46821021 original size:36 final size:34
Alignment explanation
Indices: 46820960--46821043 Score: 150
Period size: 36 Copynumber: 2.4 Consensus size: 34
46820950 ACATAACTTA
46820960 CATAACTTACATAATACATAAATATATATCATAT
1 CATAACTTACATAATACATAAATATATATCATAT
46820994 CATAACTTACATAACTTACATAAATATATATCATAT
1 CATAACTTACATAA--TACATAAATATATATCATAT
46821030 CATAACTTACATAA
1 CATAACTTACATAA
46821044 AACTTTGGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
34 14 0.29
36 34 0.71
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.35
Consensus pattern (34 bp):
CATAACTTACATAATACATAAATATATATCATAT
Found at i:46821765 original size:9 final size:9
Alignment explanation
Indices: 46821751--46821776 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
46821741 TTATGAGGGA
46821751 TCAAAATTT
1 TCAAAATTT
46821760 TCAAAATTT
1 TCAAAATTT
46821769 TCAAAATT
1 TCAAAATT
46821777 GTCCTTCTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (9 bp):
TCAAAATTT
Found at i:46829236 original size:42 final size:43
Alignment explanation
Indices: 46829158--46829291 Score: 127
Period size: 43 Copynumber: 3.1 Consensus size: 43
46829148 AGACGTGGTT
* *
46829158 TTACATGT-AATCAAATATCGATGCCACTGTCCCAGACAGAGTC
1 TTACACGTAAATCAAATAT-GATGCCAATGTCCCAGACAGAGTC
* * *
46829201 TTACACG-AAATCATATATGATGCCAATGTCTCAGACATG-TTC
1 TTACACGTAAATCAAATATGATGCCAATGTCCCAGACA-GAGTC
*
46829243 TTACACGTAAATCACAA-ATTGATG-CAACGTCCCAGAC-GCAGTC
1 TTACACGTAAATCA-AATA-TGATGCCAATGTCCCAGACAG-AGTC
46829286 TTACAC
1 TTACAC
46829292 AATAACACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
41 1 0.01
42 26 0.35
43 42 0.56
44 6 0.08
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
TTACACGTAAATCAAATATGATGCCAATGTCCCAGACAGAGTC
Found at i:46840546 original size:46 final size:46
Alignment explanation
Indices: 46840493--46840668 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
46840483 TATTTGGGCA
*
46840493 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
46840539 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * * *
46840586 TCCGAGCTTGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
46840632 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46840669 GCGGTTTACA
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 63 0.59
47 30 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:46840648 original size:93 final size:93
Alignment explanation
Indices: 46840489--46840660 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
46840479 GGGATATTTG
* * *
46840489 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
46840554 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
46840582 GGCATCCGAGCTTGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
46840646 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
46840661 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGCTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:46843101 original size:20 final size:20
Alignment explanation
Indices: 46843076--46843122 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
46843066 TAGGGACACG
46843076 GGCGTGTCCCAAGCCACATC
1 GGCGTGTCCCAAGCCACATC
*
46843096 GGCGTGTCCCAAGCCACATG
1 GGCGTGTCCCAAGCCACATC
46843116 GGCGTGT
1 GGCGTGT
46843123 GACCCTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (20 bp):
GGCGTGTCCCAAGCCACATC
Found at i:46843819 original size:50 final size:50
Alignment explanation
Indices: 46843760--46843860 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
46843750 TTCCAAACAC
* * *
46843760 TTAGAAAAAATTTACGTTCACAGGTCACACGCCTGTGTAAGCAGGCCGTG
1 TTAGAAAAAAATTACATTCACAGGTCACACGCCTGTGCAAGCAGGCCGTG
*
46843810 TTAGAAAAAAATTACATTCACAGGTCACATGCCTGTGCAAGCAGGCCGTG
1 TTAGAAAAAAATTACATTCACAGGTCACACGCCTGTGCAAGCAGGCCGTG
46843860 T
1 T
46843861 GCCTCACACG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.24
Consensus pattern (50 bp):
TTAGAAAAAAATTACATTCACAGGTCACACGCCTGTGCAAGCAGGCCGTG
Found at i:46848152 original size:47 final size:46
Alignment explanation
Indices: 46848043--46848304 Score: 187
Period size: 47 Copynumber: 5.6 Consensus size: 46
46848033 TATTGTGGCT
* ** *
46848043 AGTGTAAGACATGTCTGGGACATGCATCAGCCA-CATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATCAAGACGAGAGCC
* * *
46848089 A-TGTAAGACCATGTCTGGGACATGGCATCGGGATCAAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCAAGACGAGAGCC
* * *
46848136 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACG-AGAGCC
* * * * **
46848182 AGTGTAAGA-ATGTCTGGGACATGCATAGGCTAT-GAGATGATAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-ATCAAGACGAGAGCC
* * * * *
46848227 AGTGTAACACCATGTCTGGAACATGGCATCGACAT-GAGA-TATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCAAGACGA-GAGCC
*
46848274 AGTGTAAGACCGTGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
46848305 ACACCTTACC
Statistics
Matches: 176, Mismatches: 29, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
44 1 0.01
45 42 0.24
46 43 0.24
47 77 0.44
48 13 0.07
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGAGCC
Found at i:46848233 original size:45 final size:46
Alignment explanation
Indices: 46848040--46848211 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 46
46848030 AGTTATTGTG
* * *
46848040 GCTAGTGTAAGACATGTCTGGGACATGCATCA-GCCAC-ATTATG-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCAT-AGGCCTCGA-GACGTA-A
* * ** * *
46848086 GCCA-TGTAAGACCATGTCTGGGACATGGCATCGGGATCAAGACG-AGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATAGGCCTCGAGACGTA-A
*
46848133 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATAGGCCTCGAGACGTAA
*
46848179 GCCAGTGTAAGA-ATGTCTGGGACATGCATAGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATAGGC
46848212 TATGAGATGA
Statistics
Matches: 104, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
45 27 0.26
46 41 0.39
47 28 0.27
48 8 0.08
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATAGGCCTCGAGACGTAA
Found at i:46848307 original size:47 final size:48
Alignment explanation
Indices: 46848084--46848304 Score: 192
Period size: 47 Copynumber: 4.8 Consensus size: 48
46848074 CACATTATGA
* * *
46848084 GAGCCA-TGTAAGACCATGTCTGGGACATGGCATCGGGATCAAGACGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGA-TAT
* * * * **
46848131 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGACGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATAT
* *
46848177 AAGCCAGTGTAAGA--ATGTCTGGGACAT-GCATAGGCTAT-GAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATCGAGAT-AT
** * * *
46848223 -AGTTAGTGTAACACCATGTCTGGAACATGGCATCGACAT-GAGATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATAT
*
46848269 GAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
46848305 ACACCTTACC
Statistics
Matches: 140, Mismatches: 26, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
45 34 0.24
46 26 0.19
47 67 0.48
48 13 0.09
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATAT
Found at i:46856032 original size:39 final size:38
Alignment explanation
Indices: 46855969--46856045 Score: 95
Period size: 37 Copynumber: 2.0 Consensus size: 38
46855959 ATGAAGATGT
46855969 TTAAAAATATTTATTTATTATTTTATGTTTTTAATTTTTA
1 TTAAAAATATTTATTTATTATTTTA--TTTTTAATTTTTA
* *
46856009 TTAAAACTA-TTATTT-TTACTTTTATTTTTATTTTTTA
1 TTAAAAATATTTATTTATTA-TTTTATTTTTAATTTTTA
46856046 GCAGGTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
37 12 0.35
38 3 0.09
39 11 0.32
40 8 0.24
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (38 bp):
TTAAAAATATTTATTTATTATTTTATTTTTAATTTTTA
Found at i:46858390 original size:14 final size:13
Alignment explanation
Indices: 46858370--46858401 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
46858360 AATATTTAAC
46858370 TTGTTCTTAATTA
1 TTGTTCTTAATTA
46858383 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
46858397 TTGTT
1 TTGTT
46858402 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:46863066 original size:82 final size:81
Alignment explanation
Indices: 46862950--46863105 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
46862940 AAATTGTACA
* * * *
46862950 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
46863014 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
46863031 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
46863096 TGCGAGTTGA
65 TGCGAATTGA
46863106 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46863073 original size:55 final size:52
Alignment explanation
Indices: 46862949--46863102 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
46862939 TAAATTGTAC
* *
46862949 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
46863002 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
46863057 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
46863103 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:46863107 original size:27 final size:27
Alignment explanation
Indices: 46862950--46863105 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
46862940 AAATTGTACA
*
46862950 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
46862977 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
46863004 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
46863031 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
46863059 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
46863086 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
46863106 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:46863116 original size:27 final size:27
Alignment explanation
Indices: 46862942--46863126 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
46862932 GCGGGATTAA
*
46862942 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
46862969 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
46862996 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
46863023 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
46863051 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
46863078 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
46863105 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
46863127 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:46863117 original size:82 final size:81
Alignment explanation
Indices: 46862942--46863126 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
46862932 GCGGGATTAA
* * * *
46862942 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
46863007 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
46863023 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
46863087 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
46863105 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
46863127 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:46867581 original size:162 final size:162
Alignment explanation
Indices: 46867308--46867626 Score: 575
Period size: 162 Copynumber: 2.0 Consensus size: 162
46867298 CTATTGGGAC
*
46867308 ATCAATTCGTATTGGAACATTTTTAGTTGATATGTGAGATTTTGTAATTCTCTTTAAGTCAATAA
1 ATCAATTCGTATTGGAACATTTTTAGCTGATATGTGAGATTTTGTAATTCTCTTTAAGTCAATAA
* * *
46867373 ATGAATCTGGTAGTTGATTTGTAAAATGAATTATCTGTTGAACTTCTGGTTCATATTGCTTTGTA
66 ATGAATCTAGCAGTTGATTTGTAAAATGAATTATCTATTGAACTTCTGGTTCATATTGCTTTGTA
46867438 CAAGGATCTTATACAATGATAATTCATAGAGT
131 CAAGGATCTTATACAATGATAATTCATAGAGT
*
46867470 ATCAATTCGTATTGGAACATTTTTAGCTGATATGTGAGATTTTGTAATTCTCTTTAGGTCAATAA
1 ATCAATTCGTATTGGAACATTTTTAGCTGATATGTGAGATTTTGTAATTCTCTTTAAGTCAATAA
*
46867535 ATGAATCTAGCAGTTGATTTGTAAAATGAATTATCTATTTAACTTCTGGTTCATATTGCTTTGTA
66 ATGAATCTAGCAGTTGATTTGTAAAATGAATTATCTATTGAACTTCTGGTTCATATTGCTTTGTA
*
46867600 TAAGGATCTTATACAATGATAATTCAT
131 CAAGGATCTTATACAATGATAATTCAT
46867627 TTCAAGTACT
Statistics
Matches: 150, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
162 150 1.00
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.42
Consensus pattern (162 bp):
ATCAATTCGTATTGGAACATTTTTAGCTGATATGTGAGATTTTGTAATTCTCTTTAAGTCAATAA
ATGAATCTAGCAGTTGATTTGTAAAATGAATTATCTATTGAACTTCTGGTTCATATTGCTTTGTA
CAAGGATCTTATACAATGATAATTCATAGAGT
Found at i:46876442 original size:116 final size:116
Alignment explanation
Indices: 46876307--46876546 Score: 356
Period size: 116 Copynumber: 2.1 Consensus size: 116
46876297 CAGAGACATA
** *
46876307 GGCGTGTGTCTCAGCCGTGTGTGCTACATGGCCTAGAACAC-AGGCATGTGTCTTGGTCGTGTGA
1 GGCGTGTGTCTCAGCCGTGTGTGCTACAAAGCCTAGAACACGA-GCATGTGTATTGGTCGTGTGA
* * *
46876371 TTCCTGCACCTAATTTCAAAAAAAATTAATTAACCACACGGCCTAGCACACG
65 ATCCTACACCTAAGTTCAAAAAAAATTAATTAACCACACGGCCTAGCACACG
*
46876423 GGCGTGTGTCTTAGCCGTGTGTGCTACAAAGCCTAGAACACGAGCATGTGTATTGGTCGTGTGAA
1 GGCGTGTGTCTCAGCCGTGTGTGCTACAAAGCCTAGAACACGAGCATGTGTATTGGTCGTGTGAA
* * * *
46876488 TCCTACACCTAGGTTCAAAAAACATTAATTAACCACATGGCCTAGCACATG
66 TCCTACACCTAAGTTCAAAAAAAATTAATTAACCACACGGCCTAGCACACG
*
46876539 GGCATGTG
1 GGCGTGTG
46876547 GCATGCCCGT
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
116 110 0.99
117 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (116 bp):
GGCGTGTGTCTCAGCCGTGTGTGCTACAAAGCCTAGAACACGAGCATGTGTATTGGTCGTGTGAA
TCCTACACCTAAGTTCAAAAAAAATTAATTAACCACACGGCCTAGCACACG
Found at i:46879548 original size:42 final size:43
Alignment explanation
Indices: 46879486--46879581 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 43
46879476 TGTGATTTAT
* * *
46879486 GTGTAAGACCATGTCTGGGACATTGACATCG-TATATGATTTC
1 GTGTAAGACCATGTCAGGGACAGTGACATCGATATATGATTAC
* * * *
46879528 GTGTAGGACCCTGTCAGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCAGGGACAGTGACATCGATATATGATTAC
*
46879571 GTGGAAGACCA
1 GTGTAAGACCA
46879582 CGTCTAGGAC
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
42 26 0.60
43 17 0.40
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATGTCAGGGACAGTGACATCGATATATGATTAC
Found at i:46884888 original size:43 final size:43
Alignment explanation
Indices: 46884728--46884878 Score: 169
Period size: 43 Copynumber: 3.5 Consensus size: 43
46884718 TGTGTGTTAT
* * *
46884728 CATGTAAGACCACGTCTGGGACGTTGGCATCGATTTTTGATTTA
1 CATGTAAGACCATGTCTGGGACATTGGCATCGATATTTGA-TTA
* * *
46884772 AATGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTT
1 CATGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTA
** * * * *
46884814 TGTGTAAGACCCTGTCAGGGACAGTGGCATTGATATTTGATTA
1 CATGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTA
*
46884857 CATGTAAGACCATATCTGGGAC
1 CATGTAAGACCATGTCTGGGAC
46884879 CCTGGCATTG
Statistics
Matches: 87, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 28 0.32
43 30 0.34
44 29 0.33
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:46890289 original size:29 final size:28
Alignment explanation
Indices: 46890247--46890310 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
46890237 ATTTTTCATT
*
46890247 TATTTCACATTTTAA-CCTCACAATTTTCA
1 TATTTCACATTTTAATCC-CA-AATTTGCA
46890276 TATTTCACGA-TTTAATCCCAAATTTGCA
1 TATTTCAC-ATTTTAATCCCAAATTTGCA
46890304 T-TTTCAC
1 TATTTCAC
46890311 TAAAAATCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 6 0.19
28 8 0.25
29 15 0.47
30 3 0.09
ACGTcount: A:0.30, C:0.23, G:0.03, T:0.44
Consensus pattern (28 bp):
TATTTCACATTTTAATCCCAAATTTGCA
Found at i:46896178 original size:29 final size:29
Alignment explanation
Indices: 46896146--46896222 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
46896136 AATCATATTC
*
46896146 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* * *
46896175 ATATGGCCTATTAGACCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
46896204 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
46896223 GTCACATTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:46900550 original size:28 final size:29
Alignment explanation
Indices: 46900518--46900617 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
46900508 TACCTATATC
*
46900518 TGGCCCATTAAGCCC-AATCATATTTATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
46900546 TGGCCCATTAGGCCCAAATCACT-TGTT-TA
1 TGGCCCATTAGGCCCAAATCA-TAT-TTATA
* *
46900575 TGGCTCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
*
46900604 TGGCCCGTTAGGCC
1 TGGCCCATTAGGCC
46900618 TAGTCACATT
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
28 16 0.26
29 43 0.69
30 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCATATTTATA
Found at i:46902636 original size:40 final size:40
Alignment explanation
Indices: 46902582--46902662 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
46902572 AAATGTCGCA
* * * *
46902582 ATAGATTGAGCATTAGCGGCTCTTTTTTAAAATCGCCACT
1 ATAGATTGAACATTAGCGGCGCTTTTTAAAAAACGCCACT
* *
46902622 ATAGTTTGAACATTAGTGGCGCTTTTTAAAAAACGCCACT
1 ATAGATTGAACATTAGCGGCGCTTTTTAAAAAACGCCACT
46902662 A
1 A
46902663 AAAAATTAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (40 bp):
ATAGATTGAACATTAGCGGCGCTTTTTAAAAAACGCCACT
Found at i:46902753 original size:40 final size:40
Alignment explanation
Indices: 46902690--46902779 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
46902680 AGCTTCATTG
* * * *
46902690 GCATTAGCGGCGCTTTTTGAAAAACATCGCAATAGATCGAA
1 GCATTAGCGGCGCTGTCTAAAAAACACCGCAATAGATC-AA
* *
46902731 -CATTAGTGGCGCTGTCTAAAAAACACCGCTATAGATCAA
1 GCATTAGCGGCGCTGTCTAAAAAACACCGCAATAGATCAA
46902770 GCATTAGCGG
1 GCATTAGCGG
46902780 TGTTTTTCAA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.05
40 39 0.95
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.23
Consensus pattern (40 bp):
GCATTAGCGGCGCTGTCTAAAAAACACCGCAATAGATCAA
Found at i:46903059 original size:37 final size:37
Alignment explanation
Indices: 46903017--46903091 Score: 89
Period size: 37 Copynumber: 2.0 Consensus size: 37
46903007 TATGGTTTAT
*
46903017 GGTTTAAGGATT-GGGGTTTAAGGTTTAGGGGTTTAGG
1 GGTTT-AGGATTAGGGGTTTAAGATTTAGGGGTTTAGG
* ** *
46903054 GGTTTAGGGTTAGGGGTTTATTATTTAGGGTTTTAGG
1 GGTTTAGGATTAGGGGTTTAAGATTTAGGGGTTTAGG
46903091 G
1 G
46903092 ATGGCATTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
36 5 0.16
37 27 0.84
ACGTcount: A:0.17, C:0.00, G:0.41, T:0.41
Consensus pattern (37 bp):
GGTTTAGGATTAGGGGTTTAAGATTTAGGGGTTTAGG
Found at i:46903064 original size:15 final size:15
Alignment explanation
Indices: 46902973--46903051 Score: 63
Period size: 15 Copynumber: 5.4 Consensus size: 15
46902963 ACTACTTTAA
* *
46902973 GGTTTATGGATTACG
1 GGTTTAAGGATTAGG
* *
46902988 GGTTTAGGGATTATG
1 GGTTTAAGGATTAGG
* * * *
46903003 AGTTTATGGTTTA-T
1 GGTTTAAGGATTAGG
46903017 GGTTTAAGGATT-GG
1 GGTTTAAGGATTAGG
*
46903031 GGTTTAAGGTTTAGG
1 GGTTTAAGGATTAGG
46903046 GGTTTA
1 GGTTTA
46903052 GGGGTTTAGG
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
14 20 0.39
15 31 0.61
ACGTcount: A:0.20, C:0.01, G:0.35, T:0.43
Consensus pattern (15 bp):
GGTTTAAGGATTAGG
Found at i:46903068 original size:14 final size:16
Alignment explanation
Indices: 46903029--46903073 Score: 60
Period size: 14 Copynumber: 3.0 Consensus size: 16
46903019 TTTAAGGATT
*
46903029 GGGGTTTA-AGGTTTA
1 GGGGTTTAGGGGTTTA
46903044 GGGGTTTAGGGGTTTA
1 GGGGTTTAGGGGTTTA
46903060 -GGG-TTAGGGGTTTA
1 GGGGTTTAGGGGTTTA
46903074 TTATTTAGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 11 0.39
15 11 0.39
16 6 0.21
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.38
Consensus pattern (16 bp):
GGGGTTTAGGGGTTTA
Found at i:46903069 original size:22 final size:23
Alignment explanation
Indices: 46903029--46903073 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
46903019 TTTAAGGATT
*
46903029 GGGGTTTAAGGTTTAGGGGTTTA
1 GGGGTTTAAGGGTTAGGGGTTTA
46903052 GGGGTTT-AGGGTTAGGGGTTTA
1 GGGGTTTAAGGGTTAGGGGTTTA
46903074 TTATTTAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.38
Consensus pattern (23 bp):
GGGGTTTAAGGGTTAGGGGTTTA
Found at i:46903091 original size:8 final size:8
Alignment explanation
Indices: 46903029--46903073 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
46903019 TTTAAGGATT
46903029 GGGGTTTA
1 GGGGTTTA
*
46903037 -AGGTTTA
1 GGGGTTTA
46903044 GGGGTTTA
1 GGGGTTTA
46903052 GGGGTTTA
1 GGGGTTTA
46903060 -GGG-TTA
1 GGGGTTTA
46903066 GGGGTTTA
1 GGGGTTTA
46903074 TTATTTAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 3 0.09
7 12 0.38
8 17 0.53
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.38
Consensus pattern (8 bp):
GGGGTTTA
Found at i:46903162 original size:16 final size:16
Alignment explanation
Indices: 46903141--46903188 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
46903131 ATTTGGTTCA
* *
46903141 CTGTAATGGAATAGGG
1 CTGTAATTGAATAGAG
46903157 CTGTAATTGAATAGAG
1 CTGTAATTGAATAGAG
46903173 CTGTAATTGAATAGAG
1 CTGTAATTGAATAGAG
46903189 ATTTAATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.29
Consensus pattern (16 bp):
CTGTAATTGAATAGAG
Found at i:46903195 original size:16 final size:16
Alignment explanation
Indices: 46903142--46903195 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
46903132 TTTGGTTCAC
* * *
46903142 TGTAATGGAATAGGGC
1 TGTAATTGAATAGAGA
*
46903158 TGTAATTGAATAGAGC
1 TGTAATTGAATAGAGA
46903174 TGTAATTGAATAGAGA
1 TGTAATTGAATAGAGA
*
46903190 TTTAAT
1 TGTAAT
46903196 AAGTAATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.33
Consensus pattern (16 bp):
TGTAATTGAATAGAGA
Found at i:46903263 original size:44 final size:46
Alignment explanation
Indices: 46903177--46903269 Score: 129
Period size: 44 Copynumber: 2.1 Consensus size: 46
46903167 ATAGAGCTGT
*
46903177 AATTGAATAGAGATTTAATAAGTAATTCAATTGTTTGGTTGAATGG
1 AATTGAATAGAGATGTAATAAGTAATTCAATTGTTTGGTTGAATGG
* *
46903223 AATTGAATAGAGCTGTAAT-AG-AATTC-TTGTGTTTGGTTGAATGG
1 AATTGAATAGAGATGTAATAAGTAATTCAAT-TGTTTGGTTGAATGG
46903267 AAT
1 AAT
46903270 AGATATTGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 23 0.53
45 2 0.05
46 17 0.40
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.39
Consensus pattern (46 bp):
AATTGAATAGAGATGTAATAAGTAATTCAATTGTTTGGTTGAATGG
Found at i:46903375 original size:25 final size:26
Alignment explanation
Indices: 46903342--46903392 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
46903332 GTAGGTAGAT
*
46903342 GATTATTGTT-AGTAAATTTTAATAA
1 GATTATTGTTAAATAAATTTTAATAA
*
46903367 GATTATTGTTAAATATATTTTAATAA
1 GATTATTGTTAAATAAATTTTAATAA
46903393 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (26 bp):
GATTATTGTTAAATAAATTTTAATAA
Found at i:46906913 original size:49 final size:49
Alignment explanation
Indices: 46906841--46906940 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
46906831 TTCAAGAGCC
* *
46906841 TTGAGAGAATCCTTGAATGATTTCCTCATATCCCCTATCTTTTTTTTCT
1 TTGAGAGAATCCTTGAATGATTTCCTCATATCCCCTATCTCTGTTTTCT
46906890 TTGAGAGAATCCTTGAATGATTTCCTCATATCCCCTATCTCTGTTTTCT
1 TTGAGAGAATCCTTGAATGATTTCCTCATATCCCCTATCTCTGTTTTCT
46906939 TT
1 TT
46906941 TTCTTTTTCT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.46
Consensus pattern (49 bp):
TTGAGAGAATCCTTGAATGATTTCCTCATATCCCCTATCTCTGTTTTCT
Found at i:46907935 original size:37 final size:36
Alignment explanation
Indices: 46907886--46908013 Score: 121
Period size: 37 Copynumber: 3.7 Consensus size: 36
46907876 CTAACCCCTT
46907886 AAATCA-ATAACCCTTTAAACTCCAAACCCTAAATCTC
1 AAATCATA-AACCC-TTAAACTCCAAACCCTAAATCTC
* *
46907923 AAATCATAAACCCTTAAAACTCTAAACTCTAAA---C
1 AAATCATAAACCCTT-AAACTCCAAACCCTAAATCTC
*
46907957 --A-C-T-AACCCTTGAACTCCAAACCCTAAATCTC
1 AAATCATAAACCCTTAAACTCCAAACCCTAAATCTC
* *
46907988 AAATCATAAAACCTTAAACTCTAAAC
1 AAATCATAAACCCTTAAACTCCAAAC
46908014 AATAAACCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 21
0.72 0.08 0.21
Matches are distributed among these distances:
28 14 0.19
29 7 0.10
30 1 0.01
31 2 0.03
32 1 0.01
33 1 0.01
34 2 0.03
35 1 0.01
36 17 0.23
37 26 0.36
38 1 0.01
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.23
Consensus pattern (36 bp):
AAATCATAAACCCTTAAACTCCAAACCCTAAATCTC
Found at i:46907983 original size:65 final size:64
Alignment explanation
Indices: 46907893--46908153 Score: 289
Period size: 65 Copynumber: 4.0 Consensus size: 64
46907883 CTTAAATCAA
* *
46907893 TAACCCTTTAAACTCCAAACCCTAAATCTCAAATCATAAACCCTTAAAACTCTAAACTCTAAACA
1 TAACCC-TT-AACTCCAAACCCTAAATCTCAAATCATAAACCCTTAAAACTCTAAACACTAAACC
46907958 C
64 C
* *
46907959 TAACCCTTGAACTCCAAACCCTAAATCTCAAATCATAAAACCTT-AAACTCTAAACAATAAACCC
1 TAACCCTT-AACTCCAAACCCTAAATCTCAAATCATAAACCCTTAAAACTCTAAACACTAAACCC
* * * *
46908023 TATCCCCTACACCCCAAACCATAAATCTCAAATCATAAACCCTTAAAACTCTAAACACTAAACCC
1 TAACCCTTA-ACTCCAAACCCTAAATCTCAAATCATAAACCCTTAAAACTCTAAACACTAAACCC
* * * * * * *
46908088 TAACCCCTACACCCCAAACCTTAACA-CT-AACATC-TAAACCCAT-AAATTATAAACCCTAAAC
1 TAACCCTTA-ACTCCAAACCCTAA-ATCTCAA-ATCATAAACCCTTAAAACTCTAAACACTAAAC
46908149 CC
63 CC
46908151 TAA
1 TAA
46908154 ACTATAAACC
Statistics
Matches: 174, Mismatches: 17, Indels: 11
0.86 0.08 0.05
Matches are distributed among these distances:
63 21 0.12
64 64 0.37
65 82 0.47
66 7 0.04
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.21
Consensus pattern (64 bp):
TAACCCTTAACTCCAAACCCTAAATCTCAAATCATAAACCCTTAAAACTCTAAACACTAAACCC
Found at i:46908159 original size:21 final size:22
Alignment explanation
Indices: 46908121--46908168 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
46908111 ACACTAACAT
*
46908121 CTAAACCCATAAATTATAAACC
1 CTAAACCCATAAACTATAAACC
46908143 CTAAACCC-TAAACTATAAACC
1 CTAAACCCATAAACTATAAACC
*
46908164 ATAAA
1 CTAAA
46908169 TCGTAAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.21
Consensus pattern (22 bp):
CTAAACCCATAAACTATAAACC
Found at i:46908178 original size:129 final size:129
Alignment explanation
Indices: 46907908--46908203 Score: 309
Period size: 129 Copynumber: 2.3 Consensus size: 129
46907898 CTTTAAACTC
* * * *
46907908 CAAACCCTAAATCTCAAATCATAAACCCTTAAAACTCTAAACTCTAAACACTAACCCTTGAACTC
1 CAAACCATAAATCTCAAATCATAAACCCTTAAAACTCTAAACACTAAACACTAACCCCTGAACCC
* * ** * * *
46907973 CAAACCCTAAATCTCAAATCATAAAACCTTAAACTCTAAACAATAAACCCTATCCCCTACACCC
66 CAAACCCTAAATCTCAAATCATAAAACCATAAACTATAAACAATAAACCCTAAACCATAAACCA
*
46908037 CAAACCATAAATCTCAAATCATAAACCCTTAAAACTCTAAACACTAAACCCTAACCCCT-ACACC
1 CAAACCATAAATCTCAAATCATAAACCCTTAAAACTCTAAACACTAAACACTAACCCCTGA-ACC
* * * ** *
46908101 CCAAACCTTAACA-CT-AACATC-TAAACCCATAAATTATAAACCCTAAACCCTAAACTATAAAC
65 CCAAACCCTAA-ATCTCAA-ATCATAAAACCATAAACTATAAACAATAAACCCTAAACCATAAAC
46908163 CA
128 CA
* * * *
46908165 TAAATCGTAAAATCTTAAATCAT-AACCC-TAAAA-TCTAAA
1 CAAACCAT-AAATCTCAAATCATAAACCCTTAAAACTCTAAA
46908204 AAATAAATTT
Statistics
Matches: 141, Mismatches: 22, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
126 6 0.04
127 5 0.04
128 44 0.31
129 85 0.60
130 1 0.01
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.22
Consensus pattern (129 bp):
CAAACCATAAATCTCAAATCATAAACCCTTAAAACTCTAAACACTAAACACTAACCCCTGAACCC
CAAACCCTAAATCTCAAATCATAAAACCATAAACTATAAACAATAAACCCTAAACCATAAACCA
Found at i:46908967 original size:19 final size:19
Alignment explanation
Indices: 46908943--46908988 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
46908933 GAAATTCGTT
* *
46908943 TTCTCTCCGTCGCATCCTC
1 TTCTCTCCGTCACACCCTC
*
46908962 TTCTCTCTGTCACACCCTC
1 TTCTCTCCGTCACACCCTC
46908981 TTCTCTCC
1 TTCTCTCC
46908989 ACTGCTGTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.07, C:0.48, G:0.07, T:0.39
Consensus pattern (19 bp):
TTCTCTCCGTCACACCCTC
Found at i:46909093 original size:9 final size:9
Alignment explanation
Indices: 46909074--46909124 Score: 61
Period size: 9 Copynumber: 5.7 Consensus size: 9
46909064 TTGGGTTTGG
46909074 GTTTATGTGC
1 GTTT-TGTGC
46909084 GTTTTGTGC
1 GTTTTGTGC
46909093 GTTTTG-G-
1 GTTTTGTGC
46909100 GTTTATGTGC
1 GTTT-TGTGC
46909110 GTTTTGTGC
1 GTTTTGTGC
*
46909119 ATTTTG
1 GTTTTG
46909125 AATTTGTTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
7 4 0.11
8 3 0.08
9 22 0.59
10 8 0.22
ACGTcount: A:0.06, C:0.08, G:0.31, T:0.55
Consensus pattern (9 bp):
GTTTTGTGC
Found at i:46909098 original size:26 final size:26
Alignment explanation
Indices: 46909069--46909124 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
46909059 ATGTTTTGGG
*
46909069 TTTGGGTTTATGTGCGTTTTGTGCGT
1 TTTGGGTTTATGTGCGTTTTGTGCAT
46909095 TTTGGGTTTATGTGCGTTTTGTGCAT
1 TTTGGGTTTATGTGCGTTTTGTGCAT
46909121 TTTG
1 TTTG
46909125 AATTTGTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.05, C:0.07, G:0.32, T:0.55
Consensus pattern (26 bp):
TTTGGGTTTATGTGCGTTTTGTGCAT
Found at i:46909108 original size:17 final size:16
Alignment explanation
Indices: 46909084--46909115 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
46909074 GTTTATGTGC
46909084 GTTTTGTGCGTTTTGG
1 GTTTTGTGCGTTTTGG
46909100 GTTTATGTGCGTTTTG
1 GTTT-TGTGCGTTTTG
46909116 TGCATTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.03, C:0.06, G:0.34, T:0.56
Consensus pattern (16 bp):
GTTTTGTGCGTTTTGG
Found at i:46911007 original size:8 final size:8
Alignment explanation
Indices: 46910994--46911019 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
46910984 TTGTGATGTA
46910994 ATATTTCT
1 ATATTTCT
46911002 ATATTTCT
1 ATATTTCT
46911010 ATATTTCT
1 ATATTTCT
46911018 AT
1 AT
46911020 GATGATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.62
Consensus pattern (8 bp):
ATATTTCT
Found at i:46911398 original size:14 final size:14
Alignment explanation
Indices: 46911379--46911409 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
46911369 GTGTTTGTCA
46911379 ATAATGCCATTACC
1 ATAATGCCATTACC
*
46911393 ATAATGCCATTATC
1 ATAATGCCATTACC
46911407 ATA
1 ATA
46911410 TTAAAACAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.32
Consensus pattern (14 bp):
ATAATGCCATTACC
Found at i:46911474 original size:15 final size:15
Alignment explanation
Indices: 46911450--46911504 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
46911440 ATTTAGATTA
*
46911450 ATTTATTTAAATATT
1 ATTTAATTAAATATT
*
46911465 ATTTAATTAAA-ATA
1 ATTTAATTAAATATT
*
46911479 ATTTATTTAAATATT
1 ATTTAATTAAATATT
46911494 ATTTAATTAAA
1 ATTTAATTAAA
46911505 ATAATTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
14 12 0.35
15 22 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:46911481 original size:29 final size:29
Alignment explanation
Indices: 46911448--46911511 Score: 128
Period size: 29 Copynumber: 2.2 Consensus size: 29
46911438 TAATTTAGAT
46911448 TAATTTATTTAAATATTATTTAATTAAAA
1 TAATTTATTTAAATATTATTTAATTAAAA
46911477 TAATTTATTTAAATATTATTTAATTAAAA
1 TAATTTATTTAAATATTATTTAATTAAAA
46911506 TAATTT
1 TAATTT
46911512 TTTTCCATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (29 bp):
TAATTTATTTAAATATTATTTAATTAAAA
Found at i:46911741 original size:27 final size:27
Alignment explanation
Indices: 46911709--46911790 Score: 110
Period size: 30 Copynumber: 2.9 Consensus size: 27
46911699 TAATGTTAAT
*
46911709 TATATATCATATAATAACTTACATAAA
1 TATATATCATATCATAACTTACATAAA
* *
46911736 TATATATCATATCATAATATAATACATGAA
1 TATATATCATATCATAA-CT--TACATAAA
46911766 TATATATCATATCATAACTTACATA
1 TATATATCATATCATAACTTACATA
46911791 CCTTATATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
27 21 0.45
28 1 0.02
29 1 0.02
30 24 0.51
ACGTcount: A:0.49, C:0.12, G:0.01, T:0.38
Consensus pattern (27 bp):
TATATATCATATCATAACTTACATAAA
Found at i:46911756 original size:17 final size:17
Alignment explanation
Indices: 46911734--46911782 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 17
46911724 AACTTACATA
46911734 AATATATATCATATCAT
1 AATATATATCATATCAT
46911751 -A-ATATA--ATA-CAT
1 AATATATATCATATCAT
46911763 GAATATATATCATATCAT
1 -AATATATATCATATCAT
46911781 AA
1 AA
46911783 CTTACATACC
Statistics
Matches: 26, Mismatches: 0, Indels: 12
0.68 0.00 0.32
Matches are distributed among these distances:
12 3 0.12
13 3 0.12
14 1 0.04
15 10 0.38
16 1 0.04
17 5 0.19
18 3 0.12
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.37
Consensus pattern (17 bp):
AATATATATCATATCAT
Found at i:46911799 original size:30 final size:29
Alignment explanation
Indices: 46911709--46911814 Score: 103
Period size: 30 Copynumber: 3.6 Consensus size: 29
46911699 TAATGTTAAT
*
46911709 TATATATCATATAATAACTTACATA--AA
1 TATATATCATATCATAACTTACATACTAA
46911736 TATATATCATATCATAA-TATA-ATACATGAA
1 TATATATCATATCATAACT-TACATAC-T-AA
*
46911766 TATATATCATATCATAACTTACATACCTTA
1 TATATATCATATCATAACTTACATA-CTAA
* *
46911796 TATAAATGTATATCATAAC
1 TATATAT-CATATCATAAC
46911815 ATAACTTACA
Statistics
Matches: 66, Mismatches: 4, Indels: 14
0.79 0.05 0.17
Matches are distributed among these distances:
26 4 0.06
27 18 0.27
30 28 0.42
31 15 0.23
32 1 0.02
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (29 bp):
TATATATCATATCATAACTTACATACTAA
Found at i:46911827 original size:9 final size:9
Alignment explanation
Indices: 46911813--46911854 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
46911803 GTATATCATA
46911813 ACATAACTT
1 ACATAACTT
46911822 ACATAACTT
1 ACATAACTT
*
46911831 ACAAAACTT
1 ACATAACTT
*
46911840 ACTTAACTT
1 ACATAACTT
46911849 ACATAA
1 ACATAA
46911855 TACATAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (9 bp):
ACATAACTT
Found at i:46917173 original size:43 final size:43
Alignment explanation
Indices: 46917119--46917405 Score: 303
Period size: 43 Copynumber: 6.7 Consensus size: 43
46917109 GCGTTTTTGA
* * * *
46917119 GAAAATCGCCGCTAAAGGTCATGTTCTTTAGCGCCATTAGTAT
1 GAAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCATTTGTAT
* * * *
46917162 GAAAAGTGCCGCTAAAGGTCATGTTCTTTAACGGCATTTTTTAT
1 GAAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCA-TTTGTAT
* * *
46917206 -AAAAGCGCCGCTAAAGGTCAAGTTCTTTAGCGGCGTTTTTGA-
1 GAAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCATTTGT-AT
* * * *
46917248 GAAAAGCGCCGCTACAGGTCACGTTCTTTAGTGGCGTTTGTGT
1 GAAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCATTTGTAT
* * * * *
46917291 GAAAAGCACCACTAAAGGTCACGTTCTTTAGCAGCGTTTGTGT
1 GAAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCATTTGTAT
* *
46917334 GAAAAGCGCCCCTAAAGGTCACGTTCTTTAGC-G-AGTTTGTGT
1 GAAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCA-TTTGTAT
* *
46917376 GAAAAGCGTCGGTAAAGGTCACGTTCTTTA
1 GAAAAGCGCCGCTAAAGGTCACGTTCTTTA
46917406 ATGGCGCTTT
Statistics
Matches: 213, Mismatches: 26, Indels: 11
0.85 0.10 0.04
Matches are distributed among these distances:
42 40 0.19
43 168 0.79
44 5 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
GAAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCATTTGTAT
Found at i:46917339 original size:129 final size:129
Alignment explanation
Indices: 46917103--46917411 Score: 361
Period size: 129 Copynumber: 2.4 Consensus size: 129
46917093 TATGTTAAAA
* * * * * *
46917103 TTAGTGGCGTTTTTGAGAAAATCGCCGCTAAAGGTCATGTTCTTTAGCGCCATTAGTATGAAAAG
1 TTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCACGTTCTTTAGTGGCGTTAGTATGAAAAG
** * * * * * *
46917168 TGCCGCTAAAGGTCATGTTCTTTAACGGCATTTTTTATAAAAGCGCCGCTAAAGGTCAAGTTCT
66 CACCACTAAAGGTCACGTTCTTTAACAGCATTTTGTAGAAAAGCGCCCCTAAAGGTCAAGTTCT
* * *
46917232 TTAGCGGCGTTTTTGAGAAAAGCGCCGCTACAGGTCACGTTCTTTAGTGGCGTTTGTGTGAAAAG
1 TTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCACGTTCTTTAGTGGCGTTAGTATGAAAAG
* * *
46917297 CACCACTAAAGGTCACGTTCTTTAGCAGCGTTTGTGT-GAAAAGCGCCCCTAAAGGTCACGTTCT
66 CACCACTAAAGGTCACGTTCTTTAACAGCATTT-TGTAGAAAAGCGCCCCTAAAGGTCAAGTTCT
* * * * * *
46917361 TTAGC-GAGTTTGTGTGAAAAGCGTCGGTAAAGGTCACGTTCTTTAATGGCG
1 TTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCACGTTCTTTAGTGGCG
46917412 CTTTCTCAAA
Statistics
Matches: 152, Mismatches: 27, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
128 39 0.26
129 111 0.73
130 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (129 bp):
TTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCACGTTCTTTAGTGGCGTTAGTATGAAAAG
CACCACTAAAGGTCACGTTCTTTAACAGCATTTTGTAGAAAAGCGCCCCTAAAGGTCAAGTTCT
Found at i:46919502 original size:38 final size:38
Alignment explanation
Indices: 46919451--46919547 Score: 113
Period size: 40 Copynumber: 2.5 Consensus size: 38
46919441 GGCATCTTCG
* * * *
46919451 CCCAGCCCAACACACCATGTGGGGATAGAATCGACCCA
1 CCCAACCCTACACACCATATGGGGATAGAATCAACCCA
*
46919489 CCCAACCCTACACACCAAGTATGGGGATATAATCAACCCA
1 CCCAACCCTACACACC-A-TATGGGGATAGAATCAACCCA
* *
46919529 TCCAATCCTACACACCATA
1 CCCAACCCTACACACCATA
46919548 AGGTACCGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
38 16 0.32
39 2 0.04
40 32 0.64
ACGTcount: A:0.35, C:0.37, G:0.13, T:0.14
Consensus pattern (38 bp):
CCCAACCCTACACACCATATGGGGATAGAATCAACCCA
Found at i:46919517 original size:40 final size:40
Alignment explanation
Indices: 46919470--46919545 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
46919460 ACACACCATG
*
46919470 TGGGGATAGAATCGACCCACCCAACCCTACACACCAAGTA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
* * *
46919510 TGGGGATATAATCAACCCATCCAATCCTACACACCA
1 TGGGGATAGAATCAACCCACCCAACCCTACACACCA
46919546 TAAGGTACCG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.36, C:0.34, G:0.14, T:0.16
Consensus pattern (40 bp):
TGGGGATAGAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:46930043 original size:28 final size:27
Alignment explanation
Indices: 46929975--46930090 Score: 163
Period size: 24 Copynumber: 4.4 Consensus size: 27
46929965 TATATGACAT
*
46929975 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
46930002 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
46930027 TGTGCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
46930054 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
46930078 TTGTGCTAAGTGA
1 -TGTGCTAAGTGA
46930091 GAAATTTCCC
Statistics
Matches: 80, Mismatches: 1, Indels: 15
0.83 0.01 0.16
Matches are distributed among these distances:
24 44 0.55
25 3 0.04
27 3 0.04
28 30 0.38
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:46930044 original size:52 final size:52
Alignment explanation
Indices: 46929975--46930090 Score: 214
Period size: 52 Copynumber: 2.2 Consensus size: 52
46929965 TATATGACAT
46929975 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
46930027 TGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
46930079 TGTGCTAAGTGA
1 TGTGCTAAGTGA
46930091 GAAATTTCCC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:46933458 original size:28 final size:28
Alignment explanation
Indices: 46933426--46933552 Score: 155
Period size: 29 Copynumber: 4.5 Consensus size: 28
46933416 ATAGTAAGTC
*
46933426 CGCACCCTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
*
46933454 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTG-TTATATAATCAAACT
*
46933483 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
* * ** * *
46933511 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGTTATATAA-TCAAACT
46933540 CGCACACTTAGTG
1 CGCACACTTAGTG
46933553 CCAATCTCAT
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 43 0.49
29 44 0.51
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGTTATATAATCAAACT
Found at i:46933501 original size:57 final size:57
Alignment explanation
Indices: 46933425--46933553 Score: 179
Period size: 57 Copynumber: 2.3 Consensus size: 57
46933415 TATAGTAAGT
* *
46933425 CCGCACCCTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
46933482 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
46933539 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
46933554 CAATCTCATG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:46937319 original size:12 final size:12
Alignment explanation
Indices: 46937302--46937327 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46937292 ATGTAAGTGA
46937302 TCTTGATGATTT
1 TCTTGATGATTT
46937314 TCTTGATGATTT
1 TCTTGATGATTT
46937326 TC
1 TC
46937328 ACATTTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:46938196 original size:47 final size:45
Alignment explanation
Indices: 46938030--46938251 Score: 141
Period size: 47 Copynumber: 4.8 Consensus size: 45
46938020 GGGTGATTTG
* *
46938030 TGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCC-AGACGA
1 TGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC--CCAAGA-GA
* * * * * *
46938079 -GGGCTAGTGTAAGACATGCCTGGGACATGCTTCA-TCCATATTATGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCCA-A-GA-GA
* **
46938125 -GTGCCAGAATAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCC-C-A-AGAGA
* * * * *
46938172 T-AGCCAGTGTAAGACGTGTTTGGGACACGCATC-GGCCAAGAGT
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCCAAGAGA
* *
46938215 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGC
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGC
46938252 ATGCATATAT
Statistics
Matches: 132, Mismatches: 32, Indels: 22
0.71 0.17 0.12
Matches are distributed among these distances:
43 7 0.05
44 28 0.21
45 3 0.02
46 37 0.28
47 41 0.31
48 14 0.11
49 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (45 bp):
TGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCCAAGAGA
Found at i:46940838 original size:25 final size:25
Alignment explanation
Indices: 46940786--46940840 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
46940776 CCATGCCCAA
***
46940786 AATAACATCAAATTCATCGAACGTC
1 AATAACATCAAATTCATCGAAAAAC
46940811 AATAACATC-AATTCAGTCGAAAAAC
1 AATAACATCAAATTCA-TCGAAAAAC
46940836 AATAA
1 AATAA
46940841 TCTCTAATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.51, C:0.20, G:0.07, T:0.22
Consensus pattern (25 bp):
AATAACATCAAATTCATCGAAAAAC
Found at i:46947583 original size:59 final size:54
Alignment explanation
Indices: 46947510--46947644 Score: 155
Period size: 54 Copynumber: 2.4 Consensus size: 54
46947500 TCGGGTCTGA
* * * *
46947510 ATTTAGCCTGGACTGGTAATTCAGATCCAA-GCTCAATAGAGTAATTGTCGTTGCAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGA--CAATACTCAAT-GAGT--TTAT-ATTGCAGGGG
* *
46947569 ATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTGCAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGACAATACTCAATGAGTTTATATTGCAGGGG
46947623 ATTTAGCCTGGACTGGTAATCC
1 ATTTAGCCTGGACTGGTAATCC
46947645 CGCTGCAAGG
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
54 31 0.45
55 3 0.04
57 7 0.10
58 5 0.07
59 23 0.33
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (54 bp):
ATTTAGCCTGGACTGGTAATCCAGACAATACTCAATGAGTTTATATTGCAGGGG
Found at i:46953754 original size:51 final size:51
Alignment explanation
Indices: 46953673--46953881 Score: 339
Period size: 51 Copynumber: 4.1 Consensus size: 51
46953663 TTATAGAATT
46953673 CCACTTTGTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGG
1 CCACTTTGTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGG
*
46953724 CCACTTTGTGAATATAATAGCTTTGAACACAAGTGTGGTACTATGTGAAGG
1 CCACTTTGTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGG
*
46953775 CCACTTTGTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTAAAGG
1 CCACTTTGTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGG
* * * *
46953826 CCACTTTGTGAATAAAATAACTTT-GCCTACAAGGGTGGTACTATGTGAAGG
1 CCACTTTGTGAATATAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGG
*
46953877 TCACT
1 CCACT
46953882 GTGTATTTGT
Statistics
Matches: 148, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
50 2 0.01
51 146 0.99
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (51 bp):
CCACTTTGTGAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGG
Found at i:46954964 original size:24 final size:24
Alignment explanation
Indices: 46954932--46955003 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
46954922 TGACATTGTG
*
46954932 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
*
46954956 CTAAGTGAAATAAGTCTATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
* *
46954980 CTAAGTGAATTAAGTCCTTGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
46955004 TGTACTAAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:46955036 original size:49 final size:49
Alignment explanation
Indices: 46954979--46955077 Score: 162
Period size: 49 Copynumber: 2.0 Consensus size: 49
46954969 GTCTATGGCA
* * *
46954979 TCTAAGTGAATTAAGTCCTTGGCATTGTACTAAGTGAGAAATTTCCCGG
1 TCTAAGTGAAATAAGTCCATGCCATTGTACTAAGTGAGAAATTTCCCGG
*
46955028 TCTAAGTGAAATAAGTCCATGCCATTGTGCTAAGTGAGAAATTTCCCGG
1 TCTAAGTGAAATAAGTCCATGCCATTGTACTAAGTGAGAAATTTCCCGG
46955077 T
1 T
46955078 TGAACCTTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (49 bp):
TCTAAGTGAAATAAGTCCATGCCATTGTACTAAGTGAGAAATTTCCCGG
Found at i:46955170 original size:51 final size:51
Alignment explanation
Indices: 46955088--46955336 Score: 338
Period size: 51 Copynumber: 4.9 Consensus size: 51
46955078 TGAACCTTAG
* * * * * *
46955088 GAATAAAATAGCTTTGGACACAGGTGCGGTACTATATGAAGGTCAGTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
46955139 GAAGATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
46955190 GAATATAATAGCTTTGAATACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * * *
46955241 AAATATAATAGCTTTGGACACAAGTGTAGCACTATGTGAAGGCCATTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
46955292 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATATGAAGGCCA
1 GAATATAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCA
46955337 TCGTGTATCC
Statistics
Matches: 175, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
50 1 0.01
51 174 0.99
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:46961873 original size:24 final size:24
Alignment explanation
Indices: 46961841--46961936 Score: 174
Period size: 24 Copynumber: 4.0 Consensus size: 24
46961831 TGACATTGTG
*
46961841 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
*
46961865 CTAAGTGAAATAAGTCTATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
46961889 CTAAGTGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
46961913 CTAAGTGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
46961937 TGTGCTAAGT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.25
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:46962027 original size:51 final size:51
Alignment explanation
Indices: 46961972--46962166 Score: 286
Period size: 51 Copynumber: 3.8 Consensus size: 51
46961962 TGAACCTTAG
*
46961972 GAATAAAATAGCTTTGGACACAAGTGTGGTATTATGTGAAGGTCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGTCACTTTGT
* * * *
46962023 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTAAATGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGTCACTTTGT
* *
46962074 GAATATAATAGTTTTGGACACAAGTGTGGTACTATGTGAA-GTCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGT-CACTTTGT
*
46962125 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGG
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGG
46962167 CCACCATGTA
Statistics
Matches: 130, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
50 2 0.02
51 127 0.98
52 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.32
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGTCACTTTGT
Found at i:46968159 original size:42 final size:42
Alignment explanation
Indices: 46968040--46968203 Score: 229
Period size: 42 Copynumber: 3.9 Consensus size: 42
46968030 TACCTTACCA
* * *
46968040 ATGCCATATCTCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCTCAGATATGGTCTTACACGTAGTCTCATATCG
* * * *
46968082 ATGCCAATAGCTTAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCTCAGATATGGTCTTACACGTAGTCTCATATCG
* * *
46968125 ATGTCATATCTCAGATATGGTCTTAGACGTAGTCTCATATTG
1 ATGCCATATCTCAGATATGGTCTTACACGTAGTCTCATATCG
46968167 ATGCCATATCTCAGATATGGTCTTACACGTAGTCTCA
1 ATGCCATATCTCAGATATGGTCTTACACGTAGTCTCA
46968204 GTAACCCTAA
Statistics
Matches: 105, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 71 0.68
43 34 0.32
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (42 bp):
ATGCCATATCTCAGATATGGTCTTACACGTAGTCTCATATCG
Found at i:46968170 original size:85 final size:84
Alignment explanation
Indices: 46968044--46968203 Score: 230
Period size: 85 Copynumber: 1.9 Consensus size: 84
46968034 TTACCAATGC
* * * *
46968044 CATATCTCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCTTAGCTATGGTCTTAC
1 CATATCTCAGATATGGTCTTACACGTAATCTCATATCGATGCC-ATAGCTCAGATATGGTCTTAC
46968109 ACGAAGTCTCATATCGATGT
65 ACGAAGTCTCATATCGATGT
* * * *
46968129 CATATCTCAGATATGGTCTTAGACGTAGTCTCATATTGATGCCATATCTCAGATATGGTCTTACA
1 CATATCTCAGATATGGTCTTACACGTAATCTCATATCGATGCCATAGCTCAGATATGGTCTTACA
*
46968194 CGTAGTCTCA
66 CGAAGTCTCA
46968204 GTAACCCTAA
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
84 28 0.42
85 38 0.58
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.34
Consensus pattern (84 bp):
CATATCTCAGATATGGTCTTACACGTAATCTCATATCGATGCCATAGCTCAGATATGGTCTTACA
CGAAGTCTCATATCGATGT
Found at i:46972225 original size:81 final size:81
Alignment explanation
Indices: 46972138--46972377 Score: 313
Period size: 81 Copynumber: 3.0 Consensus size: 81
46972128 TACTCCCAAA
* *
46972138 TTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTA
1 TTACAGAATTACAGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA
*
46972203 TCATTTTACCCTTAAT
66 CCATTTTACCCTTAAT
* * **
46972219 TTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTGTAAAATTA
1 TTACAGAATTACAGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA
*
46972284 CCGTTTTACCCTTAAT
66 CCATTTTACCCTTAAT
* * * * *
46972300 TTACAAAATTACTAG-TTTACCCTCAGTTTACAAAATTA-TCGTTTTACCCTCGATTTATAGAAT
1 TTACAGAATTAC-AGTTTTACCCTCAATTTACAGAATTACT-GTTTTACCCTCGATTTACAAAAT
* *
46972363 TACCGTTTTATCCTT
64 TACCATTTTACCCTT
46972378 GATTGTGAAA
Statistics
Matches: 142, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
80 1 0.01
81 140 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (81 bp):
TTACAGAATTACAGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA
CCATTTTACCCTTAAT
Found at i:46972381 original size:27 final size:27
Alignment explanation
Indices: 46972138--46972381 Score: 258
Period size: 27 Copynumber: 9.0 Consensus size: 27
46972128 TACTCCCAAA
*
46972138 TTACAGAATTACCGTTTTACCCTCAAT
1 TTACAGAATTACCGTTTTACCCTCGAT
**
46972165 TTACAGAATTACTATTTTACCCTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
* * * **
46972192 TTACAAAATTATCATTTTACCCTTAAT
1 TTACAGAATTACCGTTTTACCCTCGAT
*
46972219 TTACAGAATTACTGTTTTACCCTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
*
46972246 TTACAGAATTACTGTTTTACCCTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
** * **
46972273 TTGTAAAATTACCGTTTTACCCTTAAT
1 TTACAGAATTACCGTTTTACCCTCGAT
* *
46972300 TTACAAAATTACTAG-TTTACCCTC-AGT
1 TTACAGAATTAC-CGTTTTACCCTCGA-T
* *
46972327 TTACAAAATTATCGTTTTACCCTCGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
* * *
46972354 TTATAGAATTACCGTTTTATCCTTGAT
1 TTACAGAATTACCGTTTTACCCTCGAT
46972381 T
1 T
46972382 GTGAAATTAC
Statistics
Matches: 182, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.01
27 178 0.98
28 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TTACAGAATTACCGTTTTACCCTCGAT
Found at i:46972447 original size:27 final size:27
Alignment explanation
Indices: 46972386--46972579 Score: 228
Period size: 27 Copynumber: 7.2 Consensus size: 27
46972376 TTGATTGTGA
*
46972386 AATTACTGAAATACCCCTGTA-GATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
46972412 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
46972439 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
46972466 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
46972493 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
46972520 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
46972547 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
46972574 AATTAC
1 AATTAC
46972580 CATTTTGCCC
Statistics
Matches: 143, Mismatches: 24, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 19 0.13
27 124 0.87
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:46972480 original size:54 final size:54
Alignment explanation
Indices: 46972386--46972580 Score: 257
Period size: 54 Copynumber: 3.6 Consensus size: 54
46972376 TTGATTGTGA
* * * *
46972386 AATTACTGAAATACCCCTGTA-GATAGAATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAG
* *
46972439 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
46972493 AATTATTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
46972547 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGATAGAATTACC
46972581 ATTTTGCCCC
Statistics
Matches: 124, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 19 0.15
54 105 0.85
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGATAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:46972925 original size:22 final size:22
Alignment explanation
Indices: 46972893--46972951 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
46972883 CCCGTTATTA
*
46972893 ATGGCTCTGTGCCAACCGAAAT
1 ATGGCTTTGTGCCAACCGAAAT
* ** *
46972915 ATGGCTTTGTGCCATCTTAACT
1 ATGGCTTTGTGCCAACCGAAAT
*
46972937 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
46972952 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCGAAAT
Found at i:46973102 original size:22 final size:22
Alignment explanation
Indices: 46973070--46973128 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
46973060 CCCGTTATTA
*
46973070 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
46973092 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
46973114 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
46973129 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:46973132 original size:177 final size:177
Alignment explanation
Indices: 46972836--46973208 Score: 674
Period size: 177 Copynumber: 2.1 Consensus size: 177
46972826 CCGATCACGC
46972836 TACCGAAGGCTGTGTGCCATTGTTGTGAGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
1 TACCGAAGGCTGTGTGCCATTGTTGTGAGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
46972901 GTGCCAACCGAAATATGGCTTTGTGCCATCTTAACTATGGCTTCGTGCCAAACGTATTTACCTGT
66 GTGCCAACCGAAATATGGCTTTGTGCCATCTTAACTATGGCTTCGTGCCAAACGTATTTACCTGT
*
46972966 AGCTATGTGCCTAACATATTTGTTGACGATTCTGTGTCGATCATATT
131 AGCTATGTGCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
* * * *
46973013 TACCGAAGGCTGTGTGTCGTTGTTGTGGGTTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
1 TACCGAAGGCTGTGTGCCATTGTTGTGAGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
* *
46973078 GTGCCAACCTAAATATGGCTTTGTGCCATCTTGACTATGGCTTCGTGCCAAACGTATTTACCTGT
66 GTGCCAACCGAAATATGGCTTTGTGCCATCTTAACTATGGCTTCGTGCCAAACGTATTTACCTGT
46973143 AGCTATGTGCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
131 AGCTATGTGCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
*
46973190 TACCGAAGGCTGTGCGCCA
1 TACCGAAGGCTGTGTGCCA
46973209 GTTATATTAC
Statistics
Matches: 186, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
177 186 1.00
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (177 bp):
TACCGAAGGCTGTGTGCCATTGTTGTGAGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
GTGCCAACCGAAATATGGCTTTGTGCCATCTTAACTATGGCTTCGTGCCAAACGTATTTACCTGT
AGCTATGTGCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
Found at i:46973315 original size:27 final size:27
Alignment explanation
Indices: 46973293--46973366 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
46973283 TAGGTGGGTT
*
46973293 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
46973320 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* * *
46973347 TGTCACGATATTTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
46973367 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:46973493 original size:6 final size:6
Alignment explanation
Indices: 46973484--46973670 Score: 154
Period size: 6 Copynumber: 30.8 Consensus size: 6
46973474 TTGCATTCAC
* * * *
46973484 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ACTCAG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
46973533 -TTACTA ATACTG ATTTTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
46973581 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
46973630 ATTCTG ATTCTG ATTCT- ATTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
46973671 CATTTTGGTT
Statistics
Matches: 145, Mismatches: 20, Indels: 32
0.74 0.10 0.16
Matches are distributed among these distances:
5 12 0.08
6 119 0.82
7 11 0.08
8 3 0.02
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:46973546 original size:30 final size:30
Alignment explanation
Indices: 46973484--46973670 Score: 215
Period size: 30 Copynumber: 6.4 Consensus size: 30
46973474 TTGCATTCAC
* *
46973484 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
* *
46973515 ATTCTGACTCAGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
*
46973545 ATTTTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
46973569 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
46973600 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* * *
46973630 ATTCTGATTCTGATTCTATTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
46973660 ATTCTGATTCT
1 ATTCTGATTCT
46973671 CATTTTGGTT
Statistics
Matches: 133, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
24 22 0.17
26 1 0.01
29 1 0.01
30 67 0.50
31 42 0.32
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:46973624 original size:85 final size:85
Alignment explanation
Indices: 46973484--46973670 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
46973474 TTGCATTCAC
*
46973484 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGACTCAGATTCTGTTACTAATACTGATTT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGACTCAGATTCTGTTACTAATACTGATTC
*
46973549 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTATTACTG
* * *
46973569 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGACTCAGATTCTGTTACTAATACTGATTC
46973634 TGATTCTGATTCTATTACTG
66 TGATTCTGATTCTATTACTG
46973654 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
46973671 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGACTCAGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTATTACTG
Found at i:46973688 original size:30 final size:30
Alignment explanation
Indices: 46973484--46973691 Score: 207
Period size: 30 Copynumber: 7.1 Consensus size: 30
46973474 TTGCATTCAC
*
46973484 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
* * * *
46973515 ATTCTGACTCAGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
*
46973545 ATTTTGATTCTGATTCTGTT----A--CTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
*
46973569 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
46973600 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
* **
46973630 ATTCTGATTCTGATTCTATTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
46973660 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
46973690 AT
1 AT
46973692 AATGTTTCTT
Statistics
Matches: 148, Mismatches: 19, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
24 21 0.14
26 1 0.01
29 2 0.01
30 78 0.53
31 46 0.31
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:46975719 original size:27 final size:27
Alignment explanation
Indices: 46975689--46976010 Score: 326
Period size: 27 Copynumber: 11.9 Consensus size: 27
46975679 AGTACTCCCG
*
46975689 ATTTACAGAATTACTATTTTACCCTCA
1 ATTTACAGAATTACTGTTTTACCCTCA
* * * *
46975716 ATTTTCAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCA
* *
46975743 ATTTATAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCA
* **
46975770 ATTTATAGAATTACCATTTTACCCTCA
1 ATTTACAGAATTACTGTTTTACCCTCA
* * *
46975797 GTTTACAGAATTACTATTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCA
*
46975824 ATTTATAGAATTACTGTTTTACCCTCA
1 ATTTACAGAATTACTGTTTTACCCTCA
* * *
46975851 GTTTACAGAATTACTATTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCA
* * *
46975878 ATTTATAGAATTACCGTTTTACCCTTA
1 ATTTACAGAATTACTGTTTTACCCTCA
** * * * *
46975905 ATTTGTAAAATTGCCGTTTTACCCTTA
1 ATTTACAGAATTACTGTTTTACCCTCA
46975932 ATTTACAGAATTACTAG-TTTACCCTCA
1 ATTTACAGAATTACT-GTTTTACCCTCA
* * *
46975959 GTTTACAAAATTA-TCGTTTTACCCTCG
1 ATTTACAGAATTACT-GTTTTACCCTCA
*
46975986 ATTTATAGAATTA-TCGTTTTACCCT
1 ATTTACAGAATTACT-GTTTTACCCT
46976011 TGATTGTGAA
Statistics
Matches: 247, Mismatches: 46, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
26 2 0.01
27 244 0.99
28 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
ATTTACAGAATTACTGTTTTACCCTCA
Found at i:46975726 original size:54 final size:54
Alignment explanation
Indices: 46975656--46976015 Score: 309
Period size: 54 Copynumber: 6.7 Consensus size: 54
46975646 TACTGAAATG
* * ***
46975656 CCCTCGACTTGTAAAATTACCAAAGTACTCC-CGATTTACAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCATTTTAC-CCTCGATTTACAGAATTACTATTTTA
* * * *
46975710 CCCTCAATTT-TCAAAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTAT-AAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTA
*
46975764 CCCTCGATTTATAGAATTACCATTTTACCCTC-AGTTTACAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGA-TTTACAGAATTACTATTTTA
* **
46975818 CCCTCGATTTATAGAATTACTGTTTTACCCTC-AGTTTACAGAATTACTATTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGA-TTTACAGAATTACTATTTTA
* * ** ** * * **
46975872 CCCTCGATTTATAGAATTACCGTTTTACCCTTAATTTGTAAAATTGCCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTA
** * * * * * *
46975926 CCCTTAATTTACAGAATTACTAGTTTACCCTC-AGTTTACAAAATTA-TCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGA-TTTACAGAATTACT-ATTTTA
* * * *
46975980 CCCTCGATTTATAGAATTATCGTTTTACCCTTGATT
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATT
46976016 GTGAAATTAC
Statistics
Matches: 256, Mismatches: 42, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
53 5 0.02
54 248 0.97
55 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTA
Found at i:46975780 original size:81 final size:81
Alignment explanation
Indices: 46975687--46976015 Score: 428
Period size: 81 Copynumber: 4.1 Consensus size: 81
46975677 AAAGTACTCC
*
46975687 CGATTTACAGAATTACTATTTTACCCTCAATTTTCAAAATTACCGTTTTACCCTCGATTTATAGA
1 CGATTTACAGAATTACTATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAGA
46975752 ATTACTGTTTTACCCT
66 ATTACTGTTTTACCCT
* * * * **
46975768 CGATTTATAGAATTACCATTTTACCCTCAGTTTACAGAATTACTATTTTACCCTCGATTTATAGA
1 CGATTTACAGAATTACTATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAGA
46975833 ATTACTGTTTTACCCT
66 ATTACTGTTTTACCCT
* * * ** * *
46975849 C-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTAATTTGTAA
1 CGA-TTTACAGAATTACTATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAG
* *
46975913 AATTGCCGTTTTACCCT
65 AATTACTGTTTTACCCT
** * * *
46975930 TAATTTACAGAATTACTAGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATTTATAGA
1 CGATTTACAGAATTACTATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAGA
46975995 ATTA-TCGTTTTACCCT
66 ATTACT-GTTTTACCCT
*
46976011 TGATT
1 CGATT
46976016 GTGAAATTAC
Statistics
Matches: 211, Mismatches: 34, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.00
81 209 0.99
82 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (81 bp):
CGATTTACAGAATTACTATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTATAGA
ATTACTGTTTTACCCT
Found at i:46976168 original size:27 final size:27
Alignment explanation
Indices: 46976028--46976188 Score: 180
Period size: 27 Copynumber: 6.0 Consensus size: 27
46976018 GAAATTACTT
*
46976028 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACCG
* * *
46976055 AAATACCCTTATAGGATAGAATTACCA
1 AAATACCCCTATAGGGTAGAATTACCG
*
46976082 AAATACCCCTATAGGGTAGAATTATCG
1 AAATACCCCTATAGGGTAGAATTACCG
* * *
46976109 AAATACCCTTGTAGGGTAGAAATT-CCA
1 AAATACCCCTATAGGGTAG-AATTACCG
*
46976136 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACCG
* * * * *
46976163 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTATAGGGTAGAATTACC
46976189 ATTTTGCCCC
Statistics
Matches: 114, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.04
27 106 0.93
28 4 0.04
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAGAATTACCG
Found at i:46976173 original size:54 final size:55
Alignment explanation
Indices: 46976018--46976189 Score: 242
Period size: 54 Copynumber: 3.2 Consensus size: 55
46976008 CCTTGATTGT
** * * *
46976018 GAAATTACTTAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTATAGGATA
1 GAAATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
*
46976073 G-AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTA
1 GAAATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
* * *
46976127 GAAATT-CCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTA
1 GAAATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
46976181 -AAATTACCA
1 GAAATTACCA
46976190 TTTTGCCCCT
Statistics
Matches: 105, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
53 5 0.05
54 95 0.90
55 5 0.05
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (55 bp):
GAAATTACCAAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
Found at i:46976425 original size:27 final size:26
Alignment explanation
Indices: 46976387--46976469 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
46976377 TGGAGGAAGC
*
46976387 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
46976414 GTTCTGGTGGCTCTGCCATAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
46976440 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
46976467 GTT
1 GTT
46976470 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:46976591 original size:22 final size:22
Alignment explanation
Indices: 46976557--46976615 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
46976547 CCCGTTATTA
* *
46976557 ATGGCTCTATGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
46976579 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
46976601 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
46976616 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:46976796 original size:177 final size:177
Alignment explanation
Indices: 46976500--46976867 Score: 700
Period size: 177 Copynumber: 2.1 Consensus size: 177
46976490 CCGATCACGC
46976500 TACCGAAGGCTGTGTGCCGTTGTTGTGGGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
1 TACCGAAGGCTGTGTGCCGTTGTTGTGGGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
*
46976565 ATGCCAACCTAAATATGGCTTTGTGCCATCTTGACTATGGCTTCGTGCCAAACGTATTTACCTGT
66 ATGCCAACCTAAATATGGCTTTGTGCCATCTTGACTATGACTTCGTGCCAAACGTATTTACCTGT
*
46976630 AGCTATGTGCCTAACATTTTTGTTGACGACTCTGTGTCGATCATATT
131 AGCTATGTGCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
46976677 TACCGAAGGCTGTGTGCCGTTGTTGTGGGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
1 TACCGAAGGCTGTGTGCCGTTGTTGTGGGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
* *
46976742 GTGCCAACCTAAATATGTCTTTGTGCCATCTTGACTATGACTTCGTGCCAAACGTATTTACCTGT
66 ATGCCAACCTAAATATGGCTTTGTGCCATCTTGACTATGACTTCGTGCCAAACGTATTTACCTGT
46976807 AGCTATGTGCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
131 AGCTATGTGCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
46976854 TACCGAAGGCTGTG
1 TACCGAAGGCTGTG
46976868 CGCCAATTAT
Statistics
Matches: 187, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
177 187 1.00
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (177 bp):
TACCGAAGGCTGTGTGCCGTTGTTGTGGGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
ATGCCAACCTAAATATGGCTTTGTGCCATCTTGACTATGACTTCGTGCCAAACGTATTTACCTGT
AGCTATGTGCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
Found at i:46976979 original size:27 final size:27
Alignment explanation
Indices: 46976957--46977030 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
46976947 TAGGTGGGTT
*
46976957 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
46976984 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* * *
46977011 TGTCACGATATTTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
46977031 CAGCCATGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:46977184 original size:6 final size:6
Alignment explanation
Indices: 46977173--46977334 Score: 131
Period size: 6 Copynumber: 26.8 Consensus size: 6
46977163 TTGTCACCTA
* * * *
46977173 ATTCTG ATTCTG ACTT-TG ATTCTG -TTACTA ATACTG ATTTTA ATTCTG
1 ATTCTG ATTCTG A-TTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
46977221 ATTCT- ATTACTG ATTCTG ATTCTG TTTCTG -TCACCTT ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
46977270 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
46977318 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
46977335 CATTTTGGTT
Statistics
Matches: 126, Mismatches: 15, Indels: 30
0.74 0.09 0.18
Matches are distributed among these distances:
5 13 0.10
6 100 0.79
7 11 0.09
8 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:46977288 original size:85 final size:85
Alignment explanation
Indices: 46977148--46977334 Score: 288
Period size: 85 Copynumber: 2.2 Consensus size: 85
46977138 TTGCATTCAC
46977148 ATTCTGATTCTGATTT-TGTCACCTAATTCTGATTCTGACTTTGATTCTGTTACTAATACTGATT
1 ATTCTGATTCTG-TTTCTGTCACCTAATTCTGATTCTGACTTTGATTCTGTTACTAATACTGATT
*
46977212 TTAATTCTGATTCTATTACTG
65 CTAATTCTGATTCTATTACTG
* *
46977233 ATTCTGATTCTGTTTCTGTCACCTTATTCTGATTCTGA-TTCTGATTCTGTTACTAATATTGATT
1 ATTCTGATTCTGTTTCTGTCACCTAATTCTGATTCTGACTT-TGATTCTGTTACTAATACTGATT
* *
46977297 CTGATTCTGATTCTGTTACTG
65 CTAATTCTGATTCTATTACTG
*
46977318 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGTTTCT
46977335 CATTTTGGTT
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
84 5 0.05
85 89 0.95
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (85 bp):
ATTCTGATTCTGTTTCTGTCACCTAATTCTGATTCTGACTTTGATTCTGTTACTAATACTGATTC
TAATTCTGATTCTATTACTG
Found at i:46977355 original size:30 final size:30
Alignment explanation
Indices: 46977148--46977334 Score: 192
Period size: 30 Copynumber: 6.4 Consensus size: 30
46977138 TTGCATTCAC
* *
46977148 ATTCTGATTCTGATTTTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
46977179 ATTCTGACTT-TGATTCTGTTACTAATACTG
1 ATTCTGA-TTCTGATTCTGTTACTAATTCTG
* * *
46977209 ATTTTAATTCTGATTC---TA-T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* * *
46977233 ATTCTGATTCTGTTTCTGTCACCTTATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
46977264 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
46977294 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
46977324 ATTCTGATTCT
1 ATTCTGATTCT
46977335 CATTTTGGTT
Statistics
Matches: 131, Mismatches: 14, Indels: 23
0.78 0.08 0.14
Matches are distributed among these distances:
24 18 0.14
26 1 0.01
27 3 0.02
29 4 0.03
30 63 0.48
31 40 0.31
32 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:46980120 original size:27 final size:27
Alignment explanation
Indices: 46980089--46980390 Score: 383
Period size: 27 Copynumber: 11.2 Consensus size: 27
46980079 AAAGTACTCC
46980089 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
46980116 TGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
46980143 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * **
46980170 C-AGTTCATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
46980197 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
46980224 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
46980251 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
46980278 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
46980305 TAATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
46980332 CAATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
46980359 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
46980386 TGATT
1 CGATT
46980391 GTGAAATTAC
Statistics
Matches: 236, Mismatches: 35, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
26 2 0.01
27 232 0.98
28 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:46980463 original size:54 final size:54
Alignment explanation
Indices: 46980395--46980574 Score: 238
Period size: 54 Copynumber: 3.3 Consensus size: 54
46980385 TTGATTGTGA
* ** *
46980395 AATTACTGAAATACCCCTATAAGGTAGAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
46980449 AATTACTGAAATACCCTTATAAGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
46980503 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
46980557 AATTA-TCGAGATACCCTT
1 AATTACT-GAAATACCCTT
46980575 GTGGGGTAAA
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 112 0.99
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:46980570 original size:27 final size:27
Alignment explanation
Indices: 46980402--46980588 Score: 205
Period size: 27 Copynumber: 6.9 Consensus size: 27
46980392 TGAAATTACT
* * *
46980402 GAAATACCCCTATAAGGTAGAATTTTC
1 GAAATACCCCTGTAGGGTAGAATTATC
*
46980429 GAAATACCCCTATAGGGTAGAATTA-C
1 GAAATACCCCTGTAGGGTAGAATTATC
* * * * *
46980455 TGAAATACCCTTATAAGATAGAATTACC
1 -GAAATACCCCTGTAGGGTAGAATTATC
*
46980483 AAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
* * *
46980510 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTATC
46980537 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTATC
* * * *
46980564 GAGATACCCTTGTGGGGTAAAATTA
1 GAAATACCCCTGTAGGGTAGAATTA
46980589 CCATTTTGCC
Statistics
Matches: 136, Mismatches: 22, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 134 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTATC
Found at i:46980850 original size:27 final size:25
Alignment explanation
Indices: 46980789--46980871 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 25
46980779 CGGAGGAAGC
*
46980789 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCT-CCAC-AATATCT
46980816 GTTCTGGTGGCTCTACCACAATATCT
1 GTTCTGGTGGCTCT-CCACAATATCT
* * *
46980842 GTATTTGGTGACTCTCTCATAATATCT
1 GT-TCTGGTGGCTCTC-CACAATATCT
46980869 GTT
1 GTT
46980872 GACCGATCGA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
26 11 0.22
27 38 0.78
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (25 bp):
GTTCTGGTGGCTCTCCACAATATCT
Found at i:46980991 original size:22 final size:22
Alignment explanation
Indices: 46980959--46981017 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
46980949 CCCGTTATTA
*
46980959 ATGGCTCTGTGCCAACCGAAAT
1 ATGGCTTTGTGCCAACCGAAAT
* ** *
46980981 ATGGCTTTGTGCCATCTTAACT
1 ATGGCTTTGTGCCAACCGAAAT
*
46981003 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
46981018 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCGAAAT
Found at i:46981168 original size:22 final size:22
Alignment explanation
Indices: 46981136--46981194 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
46981126 CCCGTTATTA
*
46981136 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
46981158 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
46981180 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
46981195 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:46981203 original size:177 final size:177
Alignment explanation
Indices: 46980902--46981273 Score: 654
Period size: 177 Copynumber: 2.1 Consensus size: 177
46980892 CCGATCACGC
* * * *
46980902 TACCTAAGGCTGTGTGACGTTGTTGTGGGCTTCGTGCTGATTATAGACCCGTTATTAATGGCTCT
1 TACCGAAGGCTGTGTGCCGTTGTTATGGGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
46980967 GTGCCAACCGAAATATGGCTTTGTGCCATCTTAACTATGGCTTCGTGCCAAACGTATTTACCTGT
66 GTGCCAACCGAAATATGGCTTTGTGCCATCTTAACTATGGCTTCGTGCCAAACGTATTTACCTGT
*
46981032 AGCTATGTCCCTAACATATTTGTTGACGATTCTGTGTCGATCATATT
131 AGCTATGTCCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
*
46981079 TACCGAAGGCTGTGTGCCGTTGTTATGGGTTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
1 TACCGAAGGCTGTGTGCCGTTGTTATGGGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
* * *
46981144 GTGCCAACCTAAATATGGCTTTGTGCCATCTTGACTATGGCTTCGTGCCAAACGTATTTACTTGT
66 GTGCCAACCGAAATATGGCTTTGTGCCATCTTAACTATGGCTTCGTGCCAAACGTATTTACCTGT
*
46981209 AGCTATGTGCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
131 AGCTATGTCCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
46981256 TACCGAAGGCTGTGTGCC
1 TACCGAAGGCTGTGTGCC
46981274 AGTTATATTA
Statistics
Matches: 185, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
177 185 1.00
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.35
Consensus pattern (177 bp):
TACCGAAGGCTGTGTGCCGTTGTTATGGGCTTCGTGCCGATTATAGACCCGTTATTAATGGCTCT
GTGCCAACCGAAATATGGCTTTGTGCCATCTTAACTATGGCTTCGTGCCAAACGTATTTACCTGT
AGCTATGTCCCTAACATATTTGTTGACGACTCTGTGTCGATCATATT
Found at i:46981381 original size:27 final size:27
Alignment explanation
Indices: 46981359--46981433 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
46981349 TAGGTGGGTT
*
46981359 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
46981386 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* * *
46981413 TGTCACGATATTTGT-TCTGGT
1 TGCCACAATATCTGTATCTGGT
46981434 AGCCATGCTG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:46981559 original size:6 final size:6
Alignment explanation
Indices: 46981550--46981730 Score: 142
Period size: 6 Copynumber: 29.8 Consensus size: 6
46981540 TTGCATTCAC
* * * *
46981550 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ACTCAG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
46981599 -TTACTA ATACTG ATTTTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
46981647 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
46981696 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCT
46981731 CATTTTGGTT
Statistics
Matches: 139, Mismatches: 20, Indels: 32
0.73 0.10 0.17
Matches are distributed among these distances:
5 11 0.08
6 115 0.83
7 10 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:46981612 original size:30 final size:30
Alignment explanation
Indices: 46981550--46981730 Score: 212
Period size: 30 Copynumber: 6.2 Consensus size: 30
46981540 TTGCATTCAC
* *
46981550 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
* *
46981581 ATTCTGACTCAGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
*
46981611 ATTTTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
46981635 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
46981666 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
46981696 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
46981726 ATTCT
1 ATTCT
46981731 CATTTTGGTT
Statistics
Matches: 128, Mismatches: 15, Indels: 15
0.81 0.09 0.09
Matches are distributed among these distances:
24 22 0.17
26 1 0.01
29 1 0.01
30 62 0.48
31 42 0.33
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:46981690 original size:85 final size:85
Alignment explanation
Indices: 46981550--46981730 Score: 326
Period size: 85 Copynumber: 2.1 Consensus size: 85
46981540 TTGCATTCAC
*
46981550 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGACTCAGATTCTGTTACTAATACTGATTT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGACTCAGATTCTGTTACTAATACTGATTC
46981615 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* * *
46981635 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGACTCAGATTCTGTTACTAATACTGATTC
46981700 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
46981720 ATTCTGATTCT
1 ATTCTGATTCT
46981731 CATTTTGGTT
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGACTCAGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:46984517 original size:16 final size:17
Alignment explanation
Indices: 46984486--46984518 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
46984476 ACTTACTTAA
*
46984486 TACTTGATAATCTCAAT
1 TACTTGATAATATCAAT
46984503 TACTT-ATAATATCAAT
1 TACTTGATAATATCAAT
46984519 ATTAAATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.42
Consensus pattern (17 bp):
TACTTGATAATATCAAT
Found at i:46984821 original size:54 final size:54
Alignment explanation
Indices: 46984632--46984828 Score: 225
Period size: 55 Copynumber: 3.6 Consensus size: 54
46984622 AACTTACCAT
* * * * * *
46984632 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GACCTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* ** *
46984685 TTCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAG-AACTCATCAA
* * * *
46984740 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * *
46984794 TGCGATGCCTTGGCATGATCTCACATGATATCCTT
1 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
46984829 ATCTTACCAA
Statistics
Matches: 120, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
53 36 0.30
54 39 0.32
55 45 0.38
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:46984862 original size:26 final size:26
Alignment explanation
Indices: 46984833--46984885 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
46984823 ATCCTTATCT
46984833 TACCAAATGCCATGTTCCAAACATAG
1 TACCAAATGCCATGTTCCAAACATAG
46984859 TACCAAATGCCATGTTCCAAACATAG
1 TACCAAATGCCATGTTCCAAACATAG
46984885 T
1 T
46984886 CTTACATGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.25
Consensus pattern (26 bp):
TACCAAATGCCATGTTCCAAACATAG
Found at i:46987621 original size:20 final size:20
Alignment explanation
Indices: 46987593--46987631 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
46987583 CAATTTATAA
46987593 CATTAAAAT-TAATCTATCAT
1 CATTAAAATATAATC-ATCAT
*
46987613 CATTCAAATATAATCATCA
1 CATTAAAATATAATCATCA
46987632 AAAAATTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (20 bp):
CATTAAAATATAATCATCAT
Found at i:46998352 original size:21 final size:20
Alignment explanation
Indices: 46998311--46998355 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
46998301 AGCACATGTA
*
46998311 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAATTT
*
46998331 TTCATCAAAA-TTTACAACTT
1 TTCAT-AAAATTTTACAATTT
46998351 TTCAT
1 TTCAT
46998356 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (20 bp):
TTCATAAAATTTTACAATTT
Found at i:46998830 original size:17 final size:17
Alignment explanation
Indices: 46998808--46998841 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46998798 GACCTCTAGT
*
46998808 TTTGATTCTCATAGCTA
1 TTTGATCCTCATAGCTA
*
46998825 TTTGATCCTTATAGCTA
1 TTTGATCCTCATAGCTA
46998842 CTAGAATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47
Consensus pattern (17 bp):
TTTGATCCTCATAGCTA
Found at i:47000262 original size:25 final size:25
Alignment explanation
Indices: 47000229--47000291 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
47000219 GAATCGGTAT
* * *
47000229 TCACTCGAGCTGTAGATCGATATGC
1 TCACACGAGCTGTAAATCGATATAC
** *
47000254 TCTTACGAGCTATAAATCGATATAC
1 TCACACGAGCTGTAAATCGATATAC
47000279 TCACACGAGCTGT
1 TCACACGAGCTGT
47000292 GGGTCGAAAC
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (25 bp):
TCACACGAGCTGTAAATCGATATAC
Found at i:47008632 original size:79 final size:81
Alignment explanation
Indices: 47008496--47008678 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
47008486 TCGAATGATG
* *
47008496 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
47008560 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
47008575 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
47008637 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
47008655 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
47008679 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:47008694 original size:40 final size:40
Alignment explanation
Indices: 47008497--47008680 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
47008487 CGAATGATGT
* * * *
47008497 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
47008537 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
47008577 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
47008615 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
47008656 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47008681 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:47008702 original size:79 final size:79
Alignment explanation
Indices: 47008549--47008713 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
47008539 GGACTAAGAT
* **
47008549 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
47008614 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
47008628 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
47008691 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47008707 CCGAAGG
1 CCGAAGG
47008714 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Done.