Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 150 of 253
Found at i:48071328 original size:40 final size:40
Alignment explanation
Indices: 48071137--48071321 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
48071127 TCGAATGATG
* * * *
48071137 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCACA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
48071177 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
48071217 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
48071256 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
48071297 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48071322 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48071343 original size:79 final size:79
Alignment explanation
Indices: 48071190--48071354 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
48071180 GGACTAAGAT
* * * **
48071190 CCGAAGGCATTTGTGTGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
*
48071255 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
48071269 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
48071332 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
48071348 CCGAAGG
1 CCGAAGG
48071355 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:48073860 original size:119 final size:112
Alignment explanation
Indices: 48073639--48073851 Score: 264
Period size: 119 Copynumber: 1.8 Consensus size: 112
48073629 AACTACATGA
* * * * *
48073639 TACATACTTTAACACTTCATGCAAATATAATATAGAAAATGATAAATAACGACATAAATTACATA
1 TACATACATTAACACTTCATGCAAATACAACATAGAAAATAATAAATAACAACATAAATTACATA
* *
48073704 ATATACATTAACATTTCATCCAGATATAATCATAAATAACATAAATG
66 ATATACAATAACATTTCATCCAAATATAATCATAAATAACATAAATG
* *
48073751 TACATACATTAACATTTCATGCAAAATACAACATAGAAAATAATGAATATAACAATATAAATTAC
1 TACATACATTAACACTTCATGC-AAATACAACATAGAAAATAAT-AA-ATAACAACATAAATTAC
* *
48073816 ATAATATATACACAATAATATTTCATGCAAATATAA
63 AT-A-ATAT--ACAATAACATTTCATCCAAATATAA
48073852 CTTGAAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
112 20 0.24
113 18 0.22
114 2 0.02
115 17 0.20
116 1 0.01
117 4 0.05
119 21 0.25
ACGTcount: A:0.52, C:0.14, G:0.05, T:0.30
Consensus pattern (112 bp):
TACATACATTAACACTTCATGCAAATACAACATAGAAAATAATAAATAACAACATAAATTACATA
ATATACAATAACATTTCATCCAAATATAATCATAAATAACATAAATG
Found at i:48074073 original size:13 final size:14
Alignment explanation
Indices: 48074057--48074086 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
48074047 ATAAATGAGG
48074057 TATTTAAAA-AATA
1 TATTTAAAACAATA
48074070 TATTTAAAACAATA
1 TATTTAAAACAATA
48074084 TAT
1 TAT
48074087 AAATAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (14 bp):
TATTTAAAACAATA
Found at i:48075349 original size:90 final size:90
Alignment explanation
Indices: 48075231--48076188 Score: 1435
Period size: 90 Copynumber: 10.7 Consensus size: 90
48075221 TGTAACTCAA
* *
48075231 GAATGTCAAATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTCATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
48075296 TCGATCTGCTTCGATGTAAACACAC
66 TCGATCTGCTTCGATGTAAACACAC
* * * * *
48075321 GAATGTTAGATCTACTAACTTCGATCTGCTCCCCGTCTAATACAGAGACTCCAAATCTATCATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
*
48075386 TCGATCTGCTTCGATGTAAACACCC
66 TCGATCTGCTTCGATGTAAACACAC
* * * *
48075411 GAATGCCAGATCTGCTATCTACGATTTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTCATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
*
48075476 TCGATCTGCTTCGATGTAAATACAC
66 TCGATCTGCTTCGATGTAAACACAC
* *
48075501 GAATGTCAGATCTGCTATCTTCGATCCGCTCCCCGTCTAATACAGAGACACCAAATCTGTCATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
* *
48075566 TCGATCTGCTTCGATGTAAACGCCC
66 TCGATCTGCTTCGATGTAAACACAC
* *
48075591 GAATGTCAGATCTGCTATCTTCGATCCGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
*
48075656 TCGATCTGCTTCGATATAAACACAC
66 TCGATCTGCTTCGATGTAAACACAC
* ** *
48075681 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCCATAATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
* *
48075746 TCGATCTGCTTC-A-CT----ATAC
66 TCGATCTGCTTCGATGTAAACACAC
48075765 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
* *
48075830 TCGATCTTCTTCGATGTAAATACAC
66 TCGATCTGCTTCGATGTAAACACAC
* **
48075855 GAATGTCAGATCTGCTATCTTTGATCTGCTCCCTATCTAATACAGAGACGCCAAATCTGTCATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
*
48075920 TCGATCTGCTTCGATGTAAACACAT
66 TCGATCTGCTTCGATGTAAACACAC
* ** * *
48075945 GAATGTCAGATCTGCTATCTTCGATCTACTCCCTATCTAATACAGAGACGCAAAATCTGTCATAT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
* * *
48076010 TAGATCTGCTTCAATATAAACACAC
66 TCGATCTGCTTCGATGTAAACACAC
* * *
48076035 GAATGTCAGATCTACTATCCTCGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTCATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
48076100 TCGATCTGCTTCGATGTAAACACAC
66 TCGATCTGCTTCGATGTAAACACAC
* * * *
48076125 GAACGTCAGATCTGCTATCCTT-GATCTACTCCCTGTCTAATATAGAGACGCCAAATCTGTCATC
1 GAATGTCAGATCTGCTAT-CTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATC
48076189 GGTGATCTAC
Statistics
Matches: 785, Mismatches: 76, Indels: 14
0.90 0.09 0.02
Matches are distributed among these distances:
84 75 0.10
85 1 0.00
86 1 0.00
88 1 0.00
89 1 0.00
90 704 0.90
91 2 0.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (90 bp):
GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
TCGATCTGCTTCGATGTAAACACAC
Found at i:48076068 original size:444 final size:447
Alignment explanation
Indices: 48075231--48076181 Score: 1424
Period size: 444 Copynumber: 2.1 Consensus size: 447
48075221 TGTAACTCAA
* ** ** *
48075231 GAATGTCAAATCTGCTATCTTCGATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTCATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCCATAATCT
* *
48075296 TCGATCTGCTTCGATGTAAACACACGAATGTTAGATCTACTAACTTCGATCTGCTCCCCGTCTAA
66 TCGATCTGCTTCGATCT--A-ACACGAATGTCAGATCTACTAACTTCGATCTGCTCCCCGTCTAA
* *
48075361 TACAGAGACTCCAAATCTATCATCTTCGATCTGCTTCGATGTAAACACCCGAATGCCAGATCTGC
128 TACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATGTAAACACACGAATGCCAGATCTGC
* * *
48075426 TATCTACGATTTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
193 TATCTACGATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* * * *
48075491 GTAAATACACGAATGTCAGATCTGCTATCTTCGATCCGCTCCCCGTCTAATACAGAGACACCAAA
258 GTAAACACACGAATGTCAGATCTGCTATCTTCGATCCACTCCCCATCTAATACAGAGACACAAAA
* * * * * * * *
48075556 TCTGTCATCTTCGATCTGCTTCGATGTAAACGCCCGAATGTCAGATCTGCTATCTTCGATCCGCT
323 TCTGTCATATTAGATCTGCTTCAATATAAACACACGAATGTCAGATCTACTATCCTCGATCCGCT
48075621 CCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATATAAACACAC
388 CCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATATAAACACAC
48075681 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCCATAATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCCATAATCT
* * *
48075746 TCGATCTGCTTC-A-CT-ATACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATAC
66 TCGATCTGCTTCGATCTAACACGAATGTCAGATCTACTAACTTCGATCTGCTCCCCGTCTAATAC
* * * *
48075808 AGAGACGCCAAATCTGTCATCTTCGATCTTCTTCGATGTAAATACACGAATGTCAGATCTGCTAT
131 AGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATGTAAACACACGAATGCCAGATCTGCTAT
** *
48075873 CTTTGATCTGCTCCCTATCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTA
196 CTACGATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTA
* * * *
48075938 AACACATGAATGTCAGATCTGCTATCTTCGATCTACTCCCTATCTAATACAGAGACGCAAAATCT
261 AACACACGAATGTCAGATCTGCTATCTTCGATCCACTCCCCATCTAATACAGAGACACAAAATCT
*
48076003 GTCATATTAGATCTGCTTCAATATAAACACACGAATGTCAGATCTACTATCCTCGATCTGCTCCC
326 GTCATATTAGATCTGCTTCAATATAAACACACGAATGTCAGATCTACTATCCTCGATCCGCTCCC
* * *
48076068 CGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACAC
391 CGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATATAAACACAC
* * *
48076125 GAACGTCAGATCTGCTATCCTT-GATCTACTCCCTGTCTAATATAGAGACGCCAAATC
1 GAATGTCAGATCTGCTAT-CTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATC
48076182 TGTCATCGGT
Statistics
Matches: 454, Mismatches: 46, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
444 378 0.83
445 3 0.01
448 1 0.00
449 1 0.00
450 71 0.16
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (447 bp):
GAATGTCAGATCTGCTATCTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCCATAATCT
TCGATCTGCTTCGATCTAACACGAATGTCAGATCTACTAACTTCGATCTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATGTAAACACACGAATGCCAGATCTGCTAT
CTACGATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTA
AACACACGAATGTCAGATCTGCTATCTTCGATCCACTCCCCATCTAATACAGAGACACAAAATCT
GTCATATTAGATCTGCTTCAATATAAACACACGAATGTCAGATCTACTATCCTCGATCCGCTCCC
CGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATATAAACACAC
Found at i:48076352 original size:53 final size:54
Alignment explanation
Indices: 48076295--48076403 Score: 202
Period size: 53 Copynumber: 2.0 Consensus size: 54
48076285 TCCTAAATAG
*
48076295 ACATATTATGATGAAAAATGTTTATGAAAATGAATCCTATTTC-AGACGTCTTT
1 ACATATTATGATGAAAAATGTTTATGAAAATGAATCCTATTTCGAAACGTCTTT
48076348 ACATATTATGATGAAAAATGTTTATGAAAATGAATCCTATTTCGAAACGTCTTT
1 ACATATTATGATGAAAAATGTTTATGAAAATGAATCCTATTTCGAAACGTCTTT
48076402 AC
1 AC
48076404 TCTTCCATCC
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 43 0.80
54 11 0.20
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.37
Consensus pattern (54 bp):
ACATATTATGATGAAAAATGTTTATGAAAATGAATCCTATTTCGAAACGTCTTT
Found at i:48090082 original size:47 final size:47
Alignment explanation
Indices: 48090019--48090365 Score: 577
Period size: 47 Copynumber: 7.4 Consensus size: 47
48090009 CCCTTCGGGA
* * * * *
48090019 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48090066 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48090113 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
48090160 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48090207 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
48090254 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
48090301 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
48090348 CTTATCACATATACACAC
1 CTTATCACATATACACAC
48090366 CTTGTACACC
Statistics
Matches: 281, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 281 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48090310 original size:22 final size:22
Alignment explanation
Indices: 48090282--48090357 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
48090272 TTTCACATTC
48090282 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
48090304 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
48090328 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
48090351 ATCACAT
1 ATCACAT
48090358 ATACACACCT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:48093175 original size:22 final size:22
Alignment explanation
Indices: 48093103--48093195 Score: 64
Period size: 22 Copynumber: 4.3 Consensus size: 22
48093093 ATTATAGTTT
* *
48093103 AGGGTTTACGGTATATGG-TTA
1 AGGGTTTAAGGTTTATGGATTA
*
48093124 AGGGTTTAATGTTTAT-GAGTTA
1 AGGGTTTAAGGTTTATGGA-TTA
****
48093146 TTATTTTAAGGTTTATGGATTA
1 AGGGTTTAAGGTTTATGGATTA
* * * *
48093168 TGGGTTTAGGGATTATGGTTTA
1 AGGGTTTAAGGTTTATGGATTA
48093190 AGGGTT
1 AGGGTT
48093196 GTGGTTTAAG
Statistics
Matches: 54, Mismatches: 15, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
20 1 0.02
21 13 0.24
22 38 0.70
23 2 0.04
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.45
Consensus pattern (22 bp):
AGGGTTTAAGGTTTATGGATTA
Found at i:48093189 original size:14 final size:14
Alignment explanation
Indices: 48093155--48093203 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
48093145 ATTATTTTAA
*
48093155 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
48093169 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
*
48093184 GGTTTAAGGG-TTGT
1 GGTTT-AGGGATTAT
48093198 GGTTTA
1 GGTTTA
48093204 AGGTTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 1 0.03
14 13 0.42
15 17 0.55
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:48093204 original size:14 final size:15
Alignment explanation
Indices: 48093162--48093206 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
48093152 TAAGGTTTAT
48093162 GGATTATGGGTTT-AG
1 GGATTAT-GGTTTAAG
48093177 GGATTATGGTTTAAG
1 GGATTATGGTTTAAG
*
48093192 GG-TTGTGGTTTAAG
1 GGATTATGGTTTAAG
48093206 G
1 G
48093207 TTTAAGTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (15 bp):
GGATTATGGTTTAAG
Found at i:48093228 original size:23 final size:21
Alignment explanation
Indices: 48093184--48093231 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
48093174 TAGGGATTAT
48093184 GGTTTAAGGGTTGTGGTTTAA
1 GGTTTAAGGGTTGTGGTTTAA
*
48093205 GGTTTAAGTGTTAGTGGGTTTAA
1 GGTTTAAGGGTT-GT-GGTTTAA
48093228 GGTT
1 GGTT
48093232 CATGTTTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 11 0.46
22 2 0.08
23 11 0.46
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.44
Consensus pattern (21 bp):
GGTTTAAGGGTTGTGGTTTAA
Found at i:48093254 original size:14 final size:14
Alignment explanation
Indices: 48093237--48093284 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
48093227 AGGTTCATGT
*
48093237 TTTAGGATTTACGG
1 TTTAGGATTTAGGG
48093251 TTTAGGGA-TTAGGG
1 TTTA-GGATTTAGGG
*
48093265 ATTAGGAGTTTAGGG
1 TTTAGGA-TTTAGGG
48093280 TTTAG
1 TTTAG
48093285 ATTAATTAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 3 0.11
14 12 0.43
15 13 0.46
ACGTcount: A:0.23, C:0.02, G:0.35, T:0.40
Consensus pattern (14 bp):
TTTAGGATTTAGGG
Found at i:48093413 original size:21 final size:22
Alignment explanation
Indices: 48093389--48093490 Score: 72
Period size: 22 Copynumber: 4.8 Consensus size: 22
48093379 TATAGTTTAG
48093389 GGTTTATGA-TTTAAGGTATAT
1 GGTTTATGAGTTTAAGGTATAT
* *
48093410 GGTTTA-GAGTTTAAAGTGTAT
1 GGTTTATGAGTTTAAGGTATAT
* *
48093431 GAG-TTACT-ATTTTAAGGTTTAT
1 G-GTTTA-TGAGTTTAAGGTATAT
* *
48093453 GGATTATGAGTTT-AGGGATTAT
1 GGTTTATGAGTTTAAGGTA-TAT
*
48093475 AGTTTATG-GTTTAAGG
1 GGTTTATGAGTTTAAGG
48093491 GTTGGGGTTT
Statistics
Matches: 63, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
20 2 0.03
21 29 0.46
22 32 0.51
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.45
Consensus pattern (22 bp):
GGTTTATGAGTTTAAGGTATAT
Found at i:48093480 original size:14 final size:15
Alignment explanation
Indices: 48093447--48093480 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
48093437 CTATTTTAAG
*
48093447 GTTTATGGATTATGA
1 GTTTAGGGATTATGA
48093462 GTTTAGGGATTAT-A
1 GTTTAGGGATTATGA
48093476 GTTTA
1 GTTTA
48093481 TGGTTTAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (15 bp):
GTTTAGGGATTATGA
Found at i:48093499 original size:14 final size:15
Alignment explanation
Indices: 48093482--48093522 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
48093472 TATAGTTTAT
48093482 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
48093496 GGTTTAAGGCTTAGG
1 GGTTTAAGGGTTAGG
48093511 GG-TTAAGGGTTA
1 GGTTTAAGGGTTA
48093523 AGTGTTAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 20 0.83
15 4 0.17
ACGTcount: A:0.20, C:0.02, G:0.44, T:0.34
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:48093583 original size:34 final size:34
Alignment explanation
Indices: 48093544--48093611 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
48093534 TACTTAAGGA
48093544 TTAGGCTTTATATATATTAAATGGTTTAGGATTT
1 TTAGGCTTTATATATATTAAATGGTTTAGGATTT
*
48093578 TTAGGCTTTTTATATATTAAATGGTTTAGGATTT
1 TTAGGCTTTATATATATTAAATGGTTTAGGATTT
48093612 AAGGTTTACT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.28, C:0.03, G:0.18, T:0.51
Consensus pattern (34 bp):
TTAGGCTTTATATATATTAAATGGTTTAGGATTT
Found at i:48093596 original size:284 final size:281
Alignment explanation
Indices: 48093013--48093549 Score: 674
Period size: 291 Copynumber: 1.9 Consensus size: 281
48093003 ACTAATTGTT
* *
48093013 TTTTTAATTTATATGT-TAAATATTTTCTTATATAGTTGTAAAAAAGATAGTAATAATTTTAAAA
1 TTTTTAA-TTATAT-TATAAATATTTTCTTATATAATTATAAAAAAGATAGTAATAATTTTAAAA
* * * *
48093077 TATTGAATTAATTATCATTATAGTTTAGGGTTTACGGTATATGGTTAAGGGTTTAATGTTTATGA
64 TATTGAATTAATTATCATTATAGTTTAGGGTTTAAGGTATATGGTTAAGAGTTTAAAGTGTATGA
* * * ** *
48093142 GTTATTATTTTAAGGTTTATGGATTATGGGTTTAGGGATTATGGTTTAAGGGTTGTGGTTTAAGG
129 GTTACTATTTTAAGGTTTATGGATTATGAGTTTAGGGATTATAGTTTAAGGGTTAAGGGTTAAGG
* * * *
48093207 TTTAAGTGTTAGTGGGTTTAAGGTTCATGTTTTAGGATTTACGGTTTAGGGATTAGGGATTAGGA
194 TTTAAGTGTTAGTGGGTTTAAGGTTCAAGTGTTAGGATTTAC-G-TTAAGGATTAGGCATTAGGA
* *
48093272 GTTTAGGGTTTAGATTAATTAGTGT
257 ATTTAGGGTTTAGATTAATTAGTGC
* *
48093297 TTTTTAATTTATATTATAAATATTTTCTTATATAATTATAAAAGAGATAGTATTAATTTTAAAAT
1 TTTTTAA-TTATATTATAAATATTTTCTTATATAATTATAAAAAAGATAGTAATAATTTTAAAAT
*
48093362 ATTGAATTAATTATCATTATAGTTTAGGGTTTATGATTTAAGGTATATGGTTTAGAGTTTAAAGT
65 ATTGAATTAATTATCATTATAGTTTA-GG-----G-TTTAAGGTATATGGTTAAGAGTTTAAAGT
* *
48093427 GTATGAGTTACTATTTTAAGGTTTATGGATTATGAGTTTAGGGATTATAGTTTATGGTTTAAGGG
123 GTATGAGTTACTATTTTAAGGTTTATGGATTATGAGTTTAGGGATTATAGTTTAAGGGTTAAGGG
**
48093492 TTGGGGTTTAAG-GCTTAG-GGG-TTAAGGGTT-AAGTGTTAGG-TTTAC-TTAAGGATTAGGC
188 TTAAGGTTTAAGTG-TTAGTGGGTTTAA-GGTTCAAGTGTTAGGATTTACGTTAAGGATTAGGC
48093550 TTTATATATA
Statistics
Matches: 220, Mismatches: 23, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
283 1 0.00
284 85 0.39
285 13 0.06
288 5 0.02
289 12 0.05
290 9 0.04
291 95 0.43
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.45
Consensus pattern (281 bp):
TTTTTAATTATATTATAAATATTTTCTTATATAATTATAAAAAAGATAGTAATAATTTTAAAATA
TTGAATTAATTATCATTATAGTTTAGGGTTTAAGGTATATGGTTAAGAGTTTAAAGTGTATGAGT
TACTATTTTAAGGTTTATGGATTATGAGTTTAGGGATTATAGTTTAAGGGTTAAGGGTTAAGGTT
TAAGTGTTAGTGGGTTTAAGGTTCAAGTGTTAGGATTTACGTTAAGGATTAGGCATTAGGAATTT
AGGGTTTAGATTAATTAGTGC
Found at i:48098952 original size:21 final size:21
Alignment explanation
Indices: 48098928--48098998 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 21
48098918 TACAAATTTT
*
48098928 TAAAAATTATACATAATATAA
1 TAAAAATTATACATAATAAAA
*
48098949 TAAATATTATACAATAA-AAAA
1 TAAAAATTATAC-ATAATAAAA
48098970 TAAATAATATAATA-ATAATACAAA
1 TAAA-AAT-T-ATACATAATA-AAA
48098994 TAAAA
1 TAAAA
48098999 TAAATATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
21 18 0.44
22 10 0.24
23 3 0.07
24 10 0.24
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (21 bp):
TAAAAATTATACATAATAAAA
Found at i:48098977 original size:33 final size:29
Alignment explanation
Indices: 48098940--48099004 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 29
48098930 AAAATTATAC
48098940 ATAATATAATAAATATTATACAATAAAAAATAA
1 ATAATATAAT-AATA--ATACAA-AAAAAATAA
*
48098973 ATAATATAATAATAATACAAATAAAATAA
1 ATAATATAATAATAATACAAAAAAAATAA
48099002 ATA
1 ATA
48099005 TTTTTTGCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 11 0.35
30 6 0.19
32 4 0.13
33 10 0.32
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (29 bp):
ATAATATAATAATAATACAAAAAAAATAA
Found at i:48099053 original size:15 final size:15
Alignment explanation
Indices: 48099033--48099081 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
48099023 GGTTTAAAGT
48099033 AAAATAAATAATATA
1 AAAATAAATAATATA
**
48099048 AAAATATTTAA-A-A
1 AAAATAAATAATATA
*
48099061 TAAATAAATAATATA
1 AAAATAAATAATATA
48099076 AAAATA
1 AAAATA
48099082 TATATAAAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
13 9 0.35
14 2 0.08
15 15 0.58
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAATAAATAATATA
Found at i:48099059 original size:19 final size:19
Alignment explanation
Indices: 48099036--48099090 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
48099026 TTAAAGTAAA
48099036 ATAAATAATATAAAAATAT
1 ATAAATAATATAAAAATAT
*
48099055 TTAAAATAA-ATAAATAATAT
1 AT-AAATAATATAAA-AATAT
*
48099075 AAAAATATATATAAAA
1 ATAAATA-ATATAAAA
48099091 GGATTAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 11 0.38
20 13 0.45
21 5 0.17
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAAATAATATAAAAATAT
Found at i:48099069 original size:8 final size:9
Alignment explanation
Indices: 48099013--48099088 Score: 50
Period size: 8 Copynumber: 8.1 Consensus size: 9
48099003 TATTTTTTGC
48099013 ATATAAATA
1 ATATAAATA
*
48099022 AGGTTTAAAGTA
1 A--TATAAA-TA
*
48099034 AAATAAATA
1 ATATAAATA
48099043 ATATAAA-A
1 ATATAAATA
48099051 ATATTTAAAATA
1 ATA--T-AAATA
48099063 A-ATAAATA
1 ATATAAATA
48099071 ATATAAA-A
1 ATATAAATA
*
48099079 ATATATATA
1 ATATAAATA
48099088 A
1 A
48099089 AAGGATTAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 18
0.70 0.07 0.24
Matches are distributed among these distances:
8 17 0.32
9 17 0.32
10 5 0.09
11 9 0.17
12 5 0.09
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (9 bp):
ATATAAATA
Found at i:48099071 original size:28 final size:29
Alignment explanation
Indices: 48099025--48099082 Score: 100
Period size: 28 Copynumber: 2.0 Consensus size: 29
48099015 ATAAATAAGG
*
48099025 TTTAAAGTAAAATAAATAATATAAAAATA
1 TTTAAAATAAAATAAATAATATAAAAATA
48099054 TTTAAAAT-AAATAAATAATATAAAAATA
1 TTTAAAATAAAATAAATAATATAAAAATA
48099082 T
1 T
48099083 ATATAAAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 21 0.75
29 7 0.25
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (29 bp):
TTTAAAATAAAATAAATAATATAAAAATA
Found at i:48099080 original size:11 final size:11
Alignment explanation
Indices: 48099038--48099090 Score: 53
Period size: 11 Copynumber: 5.2 Consensus size: 11
48099028 AAAGTAAAAT
48099038 AAATAATATAA
1 AAATAATATAA
*
48099049 AAAT-AT-TTA
1 AAATAATATAA
48099058 AAATAA-AT--
1 AAATAATATAA
48099066 AAATAATATAA
1 AAATAATATAA
48099077 AAATATATATAA
1 AAATA-ATATAA
48099089 AA
1 AA
48099091 GGATTAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
8 6 0.17
9 8 0.23
10 4 0.11
11 9 0.26
12 8 0.23
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATAATATAA
Found at i:48106282 original size:24 final size:24
Alignment explanation
Indices: 48106250--48106296 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
48106240 TTGTTTAGCC
48106250 TCCCATGCACAGGAGCAGGCACTG
1 TCCCATGCACAGGAGCAGGCACTG
48106274 TCCCATGCACAGGAGCAGGCACT
1 TCCCATGCACAGGAGCAGGCACT
48106297 ACACTCTCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.34, G:0.28, T:0.13
Consensus pattern (24 bp):
TCCCATGCACAGGAGCAGGCACTG
Found at i:48107750 original size:50 final size:50
Alignment explanation
Indices: 48107666--48107881 Score: 274
Period size: 50 Copynumber: 4.3 Consensus size: 50
48107656 ATCACTCATT
* * *
48107666 TGGCCAAATATACAAGATCAAATATAATAGCACATATGTGCTTACCTATA
1 TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCTATA
* * * *
48107716 TGGCTGAATATGCAAGATCAAATTTAATATCACATATGTGCTTACCTATA
1 TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCTATA
* *
48107766 TGGCCGAATATACAA-ATTCAAATATAATATCACATTTCTGCATACCT-TCA
1 TGGCCGAATATACAAGA-TCAAATATAATATCACATATGTGCATACCTAT-A
* * * * *
48107816 TGGCCGAATATTCAAGATCAAATACAACATCACATATGTACATACCTATG
1 TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCTATA
48107866 TGGCCGAATATACAAG
1 TGGCCGAATATACAAG
48107882 GTCATTTAGC
Statistics
Matches: 143, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
49 2 0.01
50 139 0.97
51 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.29
Consensus pattern (50 bp):
TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCTATA
Found at i:48117059 original size:40 final size:40
Alignment explanation
Indices: 48117014--48117205 Score: 217
Period size: 40 Copynumber: 4.8 Consensus size: 40
48117004 ATAACCACAA
* * *
48117014 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
48117054 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
48117094 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
48117134 GCATAAATGCCTTCGGGACTTAGCCCGAATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
48117174 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
48117206 CATTCAAATG
Statistics
Matches: 140, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.96
41 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:48129207 original size:50 final size:50
Alignment explanation
Indices: 48129121--48129514 Score: 357
Period size: 50 Copynumber: 7.9 Consensus size: 50
48129111 ACTAAAGCTC
* *
48129121 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
** * * * *
48129171 TCTGATACATGTAGTAGCCTGTACTTAGTACTACACATGTGACTTAACCA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * *** *
48129221 TTTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATAGAAGTTAA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * * * *
48129273 -CGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
** * * *
48129322 TCT-AGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGA-CTAAACCA
1 TCTGA-TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-ATCAA
* ** *
48129372 TCTGATACACATAG-AGCCTACACTTAGTACTACACATGTGATCAAAGTTAA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * * * * *
48129423 -CAGGTACGCATAGTATCCTGCACTTAGTATTACACATGCGACCTATCAA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* *
48129472 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGAC
48129515 TCACAACGAA
Statistics
Matches: 266, Mismatches: 67, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
49 33 0.12
50 174 0.65
51 58 0.22
52 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:48129310 original size:101 final size:100
Alignment explanation
Indices: 48129132--48129514 Score: 318
Period size: 101 Copynumber: 3.8 Consensus size: 100
48129122 CTGGTACGCA
* * * ** **
48129132 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--ATCAATCTGATACATGTAGTAGCCTGTAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CTAAACCAA-CGGATACACATAGTAGCCTACAC
* * *
48129195 TTAGTACTACACATGTGACTTAACCATTTAATACACG
64 TTAGTACTACACATGTGACCTAACAATCTAATACACG
** * *
48129232 TAGTAGCCTGCACTTAGTACTACACACGTGA-TAGAAGTTAACGGGTACGCATAGTAGCCTACAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTA-AA-CCAACGGATACACATAGTAGCCTACAC
* * * *
48129296 TTAGTACTACACATGCGACCTATCAATCTAGTACATG
64 TTAGTACTACACATGTGACCTAACAATCTAATACACG
* *
48129333 TAGTAGCCTGCACTTAGTACTACACACGTGACTAAACCATCTGATACACATAG-AGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTAAACCAACGGATACACATAGTAGCCTACACTT
* * * *
48129397 AGTACTACACATGTGATC-AA-AGT-TAACAGGTACGCA
66 AGTACTACACATGTGACCTAACAATCT-A-A--TACACG
* * * * * *
48129433 TAGTATCCTGCACTTAGTATTACACATGCGACCT--ATCAATCTGG-TACACATAGTAGCCTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CTAAACCAA-C-GGATACACATAGTAGCCTACA
*
48129495 CTTAGTACTACACACGTGAC
63 CTTAGTACTACACATGTGAC
48129515 TCACAACGAA
Statistics
Matches: 230, Mismatches: 40, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
96 1 0.00
97 3 0.01
98 2 0.01
99 30 0.13
100 81 0.35
101 108 0.47
102 5 0.02
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTAAACCAACGGATACACATAGTAGCCTACACTT
AGTACTACACATGTGACCTAACAATCTAATACACG
Found at i:48129461 original size:150 final size:150
Alignment explanation
Indices: 48129124--48129515 Score: 599
Period size: 150 Copynumber: 2.6 Consensus size: 150
48129114 AAAGCTCTCT
*
48129124 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTG-TACATGTAGTAGC
* * * * * *
48129189 CTGTACTTAGTACTACACATGTGACTTAACCATTTAATACACGTAGTAGCCTGCACTTAGTACTA
65 CTGCACTTAGTACTACACACGTGACTAAACCATCTAATACACATAGTAGCCTACACTTAGTACTA
*
48129254 CACACGTGATAGAAGTTAACG
130 CACACGTGATAGAAGTTAACA
*
48129275 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTAGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCT-GTACATGTAGTAGC
*
48129340 CTGCACTTAGTACTACACACGTGACTAAACCATCTGATACACATAG-AGCCTACACTTAGTACTA
65 CTGCACTTAGTACTACACACGTGACTAAACCATCTAATACACATAGTAGCCTACACTTAGTACTA
*
48129404 CACATGTGATCA-AAGTTAACA
130 CACACGTGAT-AGAAGTTAACA
* * **
48129425 GGTACGCATAGTATCCTGCACTTAGTATTACACATGCGACCTATCAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCT-GTACATGTAGTAGC
48129490 CTGCACTTAGTACTACACACGTGACT
65 CTGCACTTAGTACTACACACGTGACT
48129516 CACAACGAAT
Statistics
Matches: 222, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
150 119 0.54
151 102 0.46
152 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGTACATGTAGTAGCC
TGCACTTAGTACTACACACGTGACTAAACCATCTAATACACATAGTAGCCTACACTTAGTACTAC
ACACGTGATAGAAGTTAACA
Found at i:48148484 original size:30 final size:30
Alignment explanation
Indices: 48148450--48148509 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
48148440 ATTTAATACG
48148450 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
48148480 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
48148510 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:48156002 original size:30 final size:30
Alignment explanation
Indices: 48155968--48156027 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
48155958 ATTTAATACG
48155968 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
48155998 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
48156028 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:48156978 original size:12 final size:12
Alignment explanation
Indices: 48156955--48156989 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
48156945 CAAATCATGA
48156955 GAAATG-GAAAT
1 GAAATGTGAAAT
48156966 GAAATGTGAAAT
1 GAAATGTGAAAT
*
48156978 GAAATATGAAAT
1 GAAATGTGAAAT
48156990 ATGAAATGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 6 0.27
12 16 0.73
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (12 bp):
GAAATGTGAAAT
Found at i:48156988 original size:19 final size:18
Alignment explanation
Indices: 48156955--48156997 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
48156945 CAAATCATGA
* *
48156955 GAAATGGAAATGAAATGT
1 GAAATGAAAATGAAATAT
48156973 GAAATGAAATATGAAATAT
1 GAAATGAAA-ATGAAATAT
48156992 GAAATG
1 GAAATG
48156998 GTGGATTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.53, C:0.00, G:0.23, T:0.23
Consensus pattern (18 bp):
GAAATGAAAATGAAATAT
Found at i:48161456 original size:13 final size:13
Alignment explanation
Indices: 48161438--48161463 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48161428 ATTTTGACTA
48161438 TATATGAATATGC
1 TATATGAATATGC
48161451 TATATGAATATGC
1 TATATGAATATGC
48161464 ATGTGACATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
TATATGAATATGC
Found at i:48165477 original size:28 final size:28
Alignment explanation
Indices: 48165441--48165515 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
48165431 TCAAATATGG
* *
48165441 CACTCAGTGTATGAAATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
* *
48165469 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTACGAAATATTGAGAATGA
* *
48165497 CACTTAGTGTGCAAAATAT
1 CACTTAGTGTACGAAATAT
48165516 CAAATGATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (28 bp):
CACTTAGTGTACGAAATATTGAGAATGA
Found at i:48171428 original size:29 final size:29
Alignment explanation
Indices: 48171395--48171468 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
48171385 GTTGTGAGAT
* *
48171395 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
48171424 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
48171453 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48171469 TGGTTGATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:48189485 original size:23 final size:23
Alignment explanation
Indices: 48189455--48189501 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
48189445 TAAAAGGAAG
48189455 TTAGAATAGAGATTTGGTATCGA
1 TTAGAATAGAGATTTGGTATCGA
48189478 TTAGAATAGAGATTTGGTATCGA
1 TTAGAATAGAGATTTGGTATCGA
48189501 T
1 T
48189502 ACCTTTGCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (23 bp):
TTAGAATAGAGATTTGGTATCGA
Found at i:48193718 original size:27 final size:27
Alignment explanation
Indices: 48193661--48193837 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48193651 ATATTGAGTC
* * *
48193661 CGCACACTCAGTGCTATATA-TCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48193687 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48193714 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48193742 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48193769 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48193796 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48193823 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48193838 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
26 17 0.13
27 88 0.68
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48193752 original size:55 final size:53
Alignment explanation
Indices: 48193661--48193837 Score: 212
Period size: 55 Copynumber: 3.3 Consensus size: 53
48193651 ATATTGAGTC
* * * * *
48193661 CGCACACTCAGTGCTATATATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATATCAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
48193714 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATA-TC-AACTCGCACACTTAGTGCAACATAGTCAAAT
**
48193769 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATA-TCAACTCGCACACTTAGTGCAACATAGTCAAAT
48193823 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48193838 GTACAATTTA
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
53 18 0.17
54 42 0.40
55 45 0.43
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (53 bp):
CGCACACTTAGTGCTACATATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:48193780 original size:82 final size:81
Alignment explanation
Indices: 48193681--48193836 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48193671 GTGCTATATA
* *
48193681 TCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
48193745 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
48193763 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
48193828 ACTTAGTGC
66 ACTTAGTGC
48193837 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48201895 original size:27 final size:27
Alignment explanation
Indices: 48201865--48202042 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48201855 ATATTGAGTC
* * * *
48201865 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48201892 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48201919 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48201947 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48201974 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48202001 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48202028 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48202043 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48202004 original size:82 final size:81
Alignment explanation
Indices: 48201886--48202041 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48201876 TGCTATATAA
* *
48201886 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48201951 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
48201968 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48202032 CACTTAGTGC
65 CACTTAGTGC
48202042 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48212556 original size:38 final size:38
Alignment explanation
Indices: 48212514--48212590 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
48212504 TGAGTTAGTG
48212514 TTACAAGTCAATCAAACACAATTTAGTTAAATAATGAC
1 TTACAAGTCAATCAAACACAATTTAGTTAAATAATGAC
48212552 TTACAAGTCAATCAAACACAATTTAGTTAAATAATGAC
1 TTACAAGTCAATCAAACACAATTTAGTTAAATAATGAC
48212590 T
1 T
48212591 GAAAAATCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.47, C:0.16, G:0.08, T:0.30
Consensus pattern (38 bp):
TTACAAGTCAATCAAACACAATTTAGTTAAATAATGAC
Found at i:48214846 original size:25 final size:26
Alignment explanation
Indices: 48214818--48214871 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
48214808 CAATTTGCAT
* *
48214818 AAAATATT-AATAATTCAATGAA-TTG
1 AAAA-ATTAAATAATTAAATAAATTTG
48214843 AAAAATTAAATAATTAAATAAATTTG
1 AAAAATTAAATAATTAAATAAATTTG
48214869 AAA
1 AAA
48214872 TTTAGGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.12
25 16 0.64
26 6 0.24
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (26 bp):
AAAAATTAAATAATTAAATAAATTTG
Found at i:48222553 original size:30 final size:31
Alignment explanation
Indices: 48222494--48222556 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
48222484 TTTACAAGCT
**
48222494 TAGGGGTAAAATCGTAATTTTTGTGAAAGTA
1 TAGGGGTAAAATCGTAATTTTTGCCAAAGTA
* *
48222525 TAGGGGTAAAATGGTCA-TTTTGCCAAAGTA
1 TAGGGGTAAAATCGTAATTTTTGCCAAAGTA
48222555 TA
1 TA
48222557 AATTATAGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 13 0.46
31 15 0.54
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.33
Consensus pattern (31 bp):
TAGGGGTAAAATCGTAATTTTTGCCAAAGTA
Found at i:48223219 original size:49 final size:49
Alignment explanation
Indices: 48223162--48223291 Score: 181
Period size: 49 Copynumber: 2.7 Consensus size: 49
48223152 GTTGTGTGCT
* * *
48223162 AGTGTAAGACTTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATAAAAGCC
* * *
48223211 AGTGTAAGACCTGTCAGGGACATGGCATCGACCTCGATATATAAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
*
48223260 AGTGTAAGACCTATCTGGGACATGGCATCGAC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC
48223292 TTTGATGTGC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
48 1 0.01
49 71 0.99
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
Found at i:48227986 original size:13 final size:13
Alignment explanation
Indices: 48227964--48227996 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
48227954 AAGGGTTTGT
48227964 TTAT-TAAACTAA
1 TTATCTAAACTAA
48227976 TTATCTAAACTAA
1 TTATCTAAACTAA
*
48227989 TTAACTAA
1 TTATCTAA
48227997 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:48230738 original size:45 final size:45
Alignment explanation
Indices: 48230671--48230762 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 45
48230661 AGAAATTGGG
*
48230671 TCGTTGAACATGGCACTTGTTAGGTATTGTTCCCTATTTATTTCC
1 TCGTTGAACATGGCACTCGTTAGGTATTGTTCCCTATTTATTTCC
*
48230716 TCGTTGAACATGGCACTCGTTAGGTATTGTTCCCTATTTGTTTCC
1 TCGTTGAACATGGCACTCGTTAGGTATTGTTCCCTATTTATTTCC
48230761 TC
1 TC
48230763 ATTGCGTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.43
Consensus pattern (45 bp):
TCGTTGAACATGGCACTCGTTAGGTATTGTTCCCTATTTATTTCC
Found at i:48230940 original size:6 final size:5
Alignment explanation
Indices: 48230931--48231023 Score: 73
Period size: 6 Copynumber: 17.0 Consensus size: 5
48230921 AAGAAAATTG
*
48230931 AAATGA AAATAA AAATAA AAATAA AAATA AGAATA AAAT- AAATA AAAGA
1 AAAT-A AAAT-A AAAT-A AAAT-A AAATA A-AATA AAATA AAATA AAATA
48230980 AAATAA AAATA AGAAT- AAATAA AAATAA AAATAA AAATA AAATA
1 AAAT-A AAATA A-AATA AAAT-A AAAT-A AAAT-A AAATA AAATA
48231024 GGAGGATTCA
Statistics
Matches: 78, Mismatches: 3, Indels: 13
0.83 0.03 0.14
Matches are distributed among these distances:
4 7 0.09
5 21 0.27
6 50 0.64
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:48230946 original size:12 final size:11
Alignment explanation
Indices: 48230931--48231021 Score: 91
Period size: 12 Copynumber: 8.2 Consensus size: 11
48230921 AAGAAAATTG
48230931 AAATGAAAATAA
1 AAAT-AAAATAA
48230943 AAATAAAAATAA
1 AAAT-AAAATAA
48230955 AAATAAGAAT-A
1 AAATAA-AATAA
48230966 AAAT-AAAT-A
1 AAATAAAATAA
*
48230975 AAAGAAAATAA
1 AAATAAAATAA
48230986 AAATAAGAATAA
1 AAATAA-AATAA
*
48230998 ATA-AAAATAA
1 AAATAAAATAA
48231008 AAATAAAAATAA
1 AAAT-AAAATAA
48231020 AA
1 AA
48231022 TAGGAGGATT
Statistics
Matches: 68, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
9 7 0.10
10 12 0.18
11 15 0.22
12 34 0.50
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.16
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:48236425 original size:13 final size:13
Alignment explanation
Indices: 48236403--48236435 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
48236393 AAGGGTTTGT
48236403 TTAT-TAAACTAA
1 TTATCTAAACTAA
48236415 TTATCTAAACTAA
1 TTATCTAAACTAA
*
48236428 TTAACTAA
1 TTATCTAA
48236436 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:48240203 original size:40 final size:38
Alignment explanation
Indices: 48240141--48240239 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 38
48240131 ACGGTACCAT
* *
48240141 TTGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATAC
1 TTGGTGTGTAGGGCTGGATGGGTCGATTTTAT-CCC-TAC
*
48240181 TTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCCCTAC
1 TTGGTGTGTAGGGCTGGATGGGTCGATTTTATCCCTAC
* * *
48240219 ATGGTGTGTTGGGTTGGATGG
1 TTGGTGTGTAGGGCTGGATGG
48240240 AGATGGTGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
38 20 0.38
39 3 0.06
40 29 0.56
ACGTcount: A:0.12, C:0.11, G:0.38, T:0.38
Consensus pattern (38 bp):
TTGGTGTGTAGGGCTGGATGGGTCGATTTTATCCCTAC
Found at i:48261360 original size:11 final size:11
Alignment explanation
Indices: 48261334--48261383 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
48261324 ATTTTGATAT
*
48261334 ACATGATTTG-
1 ACATGATATGC
48261344 ACATGATATGC
1 ACATGATATGC
48261355 ACATGATA--C
1 ACATGATATGC
**
48261364 GTATGATATGC
1 ACATGATATGC
48261375 ACATGATAT
1 ACATGATAT
48261384 ATTCATATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
9 7 0.22
10 9 0.28
11 16 0.50
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:48265208 original size:35 final size:35
Alignment explanation
Indices: 48265158--48265227 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
48265148 ACTTTTGGAG
48265158 TGGTTTGGGAATAAACCGATAACTTAAGAAACTTT
1 TGGTTTGGGAATAAACCGATAACTTAAGAAACTTT
* *
48265193 TGGTTTGGGATTAAACCGATAATTTAAGAAACTTT
1 TGGTTTGGGAATAAACCGATAACTTAAGAAACTTT
48265228 CACCAACTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (35 bp):
TGGTTTGGGAATAAACCGATAACTTAAGAAACTTT
Found at i:48268847 original size:72 final size:72
Alignment explanation
Indices: 48268730--48268864 Score: 216
Period size: 72 Copynumber: 1.9 Consensus size: 72
48268720 TTCTTGGGGT
*** * *
48268730 TTTCCATACTCACCACTTCTTTCTTCAGGGTTTGCCACAAAGGTGTTCTCTTCATATGATAGCTA
1 TTTCCATACTCACCACTTCTTTCTTCAGGGTCCACCACAAAGGTGTTCCCTTCAGATGATAGCTA
48268795 CAAGGGC
66 CAAGGGC
*
48268802 TTTCCATACTCACCATTTCTTTCTTCAGGGTCCACCACAAAGGTGTTCCCTTCAGATGATAGC
1 TTTCCATACTCACCACTTCTTTCTTCAGGGTCCACCACAAAGGTGTTCCCTTCAGATGATAGC
48268865 CGCTAAGGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 57 1.00
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (72 bp):
TTTCCATACTCACCACTTCTTTCTTCAGGGTCCACCACAAAGGTGTTCCCTTCAGATGATAGCTA
CAAGGGC
Found at i:48278629 original size:28 final size:28
Alignment explanation
Indices: 48278597--48278657 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
48278587 TATATTGAAA
48278597 ATGCCCATAAAATGTGAAAGTATGATTT
1 ATGCCCATAAAATGTGAAAGTATGATTT
48278625 ATGCCCATAAAATGTGAAAGTATGATTT
1 ATGCCCATAAAATGTGAAAGTATGATTT
48278653 ATGCC
1 ATGCC
48278658 TATGTATGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (28 bp):
ATGCCCATAAAATGTGAAAGTATGATTT
Found at i:48279722 original size:15 final size:15
Alignment explanation
Indices: 48279704--48279733 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48279694 ATACATTTTC
48279704 ATAAACATCATTTAA
1 ATAAACATCATTTAA
*
48279719 ATAAATATCATTTAA
1 ATAAACATCATTTAA
48279734 GTCTAAACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (15 bp):
ATAAACATCATTTAA
Found at i:48282821 original size:16 final size:16
Alignment explanation
Indices: 48282800--48282834 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
48282790 GTAGATCGGC
*
48282800 AAAAGCCGAAATGCCG
1 AAAAGCCAAAATGCCG
*
48282816 AAAAGCTAAAATGCCG
1 AAAAGCCAAAATGCCG
48282832 AAA
1 AAA
48282835 GTTTGACTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.20, G:0.20, T:0.09
Consensus pattern (16 bp):
AAAAGCCAAAATGCCG
Found at i:48283131 original size:28 final size:28
Alignment explanation
Indices: 48283049--48283138 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 28
48283039 TGACCATGAC
* *
48283049 TATAAATGTGAATTAGGCCTAATGGGCCA
1 TATAAATGTG-ATTGGGCCTAGTGGGCCA
*
48283078 TATAAATGTGATTTGGG-CTTGATGGGCCA
1 TATAAATGTGA-TTGGGCCTAG-TGGGCCA
48283107 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
48283135 TATA
1 TATA
48283139 CAAGTATGTG
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
28 19 0.35
29 35 0.65
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:48287672 original size:15 final size:15
Alignment explanation
Indices: 48287652--48287691 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
48287642 ACAAGATAAG
48287652 TGATTAAGTGAATGT
1 TGATTAAGTGAATGT
48287667 TGATTAAGTGAATGT
1 TGATTAAGTGAATGT
*
48287682 TGAATAAGTG
1 TGATTAAGTG
48287692 TTACAGTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.28, T:0.38
Consensus pattern (15 bp):
TGATTAAGTGAATGT
Found at i:48287717 original size:23 final size:23
Alignment explanation
Indices: 48287691--48287744 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
48287681 TTGAATAAGT
*
48287691 GTTACAGTGGTAGCTTCGGCTAC
1 GTTACAGTGATAGCTTCGGCTAC
*
48287714 GTTACAGTGATAGCTTCGGCTAT
1 GTTACAGTGATAGCTTCGGCTAC
*
48287737 ATTACAGT
1 GTTACAGT
48287745 ATGGCACTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (23 bp):
GTTACAGTGATAGCTTCGGCTAC
Found at i:48289876 original size:51 final size:49
Alignment explanation
Indices: 48289707--48289939 Score: 259
Period size: 49 Copynumber: 4.7 Consensus size: 49
48289697 TCTGGTACGT
* **
48289707 ATAGTAGCCTGTACTTAGTACTACACATGCAACCAATTATCCAGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACAC
* * * ** * *
48289756 GTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTAATACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCAGTACAC
* * * * ***
48289806 GTAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTATTGGGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCAGTACAC
* *
48289857 ATGGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACAC
*
48289906 GTAGTAGCCTGCACTTAGTACTACACATGTGACC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACC
48289940 TCACAATAGA
Statistics
Matches: 150, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 69 0.46
50 46 0.31
51 35 0.23
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
ATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACAC
Found at i:48290214 original size:27 final size:27
Alignment explanation
Indices: 48290168--48290219 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
48290158 GTACAACCCA
* *
48290168 TGTAATAATAATTTAACATTCAATTCG
1 TGTAACAATAATTTAACATTAAATTCG
**
48290195 TGTAACAATAATTTGCCATTAAATT
1 TGTAACAATAATTTAACATTAAATT
48290220 TCACATGACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (27 bp):
TGTAACAATAATTTAACATTAAATTCG
Found at i:48292827 original size:50 final size:49
Alignment explanation
Indices: 48292650--48292881 Score: 281
Period size: 49 Copynumber: 4.7 Consensus size: 49
48292640 TCTATTGTAA
* *
48292650 GGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGATAATT
* * *
48292699 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATTCGT-TCTCA-ATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA--CGTGTATCAGATAA-TT
* **
48292749 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* *
48292799 AGGTCACGTGTGTAGTGCTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* *
48292849 GGTCACATGTGTAGTACTAAGTGCATGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
48292882 TGCGTACCAG
Statistics
Matches: 156, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
49 67 0.43
50 53 0.34
51 36 0.23
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
Found at i:48313176 original size:30 final size:32
Alignment explanation
Indices: 48313140--48313209 Score: 99
Period size: 30 Copynumber: 2.2 Consensus size: 32
48313130 CTCTATTAGG
48313140 TCTACCTACTGAACCTGAGGA-C-AAATCCCT
1 TCTACCTACTGAACCTGAGGACCAAAATCCCT
*
48313170 TCTACCTGCTGAACCTGAGGACCCAAAATCCCT
1 TCTACCTACTGAACCTGAGGA-CCAAAATCCCT
*
48313203 TTTACCT
1 TCTACCT
48313210 CTGCCCCTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
30 20 0.57
32 1 0.03
33 14 0.40
ACGTcount: A:0.27, C:0.34, G:0.13, T:0.26
Consensus pattern (32 bp):
TCTACCTACTGAACCTGAGGACCAAAATCCCT
Found at i:48318818 original size:49 final size:50
Alignment explanation
Indices: 48318667--48318838 Score: 145
Period size: 49 Copynumber: 3.5 Consensus size: 50
48318657 TAAGATGCCG
** * * * * *
48318667 ATGCCATGTCCCGGATATGGTCTTACACTGGCTCACACAT--CAAAGTCA
1 ATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATATACCGAAGTCA
* * * * * *
48318715 ATGCCATGTCCCAGACATGGTCTTACATTGACTCTTATATATCGAAGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATATACCGAAGTCA
* * * **
48318765 ATGCCAT-TCCCAAACATGGTCTTACACTGGCTCTCATCTGCCGGTGTCA
1 ATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATATACCGAAGTCA
48318814 ATGCCATGT-CCAAGACATGGTCTTA
1 ATGCCATGTCCCAA-ACATGGTCTTA
48318839 TACTAGCTTT
Statistics
Matches: 99, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
48 33 0.33
49 42 0.42
50 24 0.24
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (50 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATATACCGAAGTCA
Found at i:48323028 original size:46 final size:46
Alignment explanation
Indices: 48322961--48323219 Score: 225
Period size: 46 Copynumber: 5.6 Consensus size: 46
48322951 TGTAACCCGC
*
48322961 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
48323007 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * * * * **
48323053 ACATCTCTCAAACTCGGACTCAACTCAACAAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * * * * *
48323100 CCATAAGTGAACTCGAACTCAACTCGATGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * **
48323146 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
48323193 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
48323220 TGAGTTCGTA
Statistics
Matches: 157, Mismatches: 50, Indels: 12
0.72 0.23 0.05
Matches are distributed among these distances:
46 93 0.59
47 64 0.41
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:48323097 original size:93 final size:93
Alignment explanation
Indices: 48322970--48323233 Score: 420
Period size: 93 Copynumber: 2.8 Consensus size: 93
48322960 CCCATAAGTG
* *** *
48322970 AACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
48323035 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* * * *
48323063 AACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCGAT
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
*
48323128 GAGCTCGGATGCCTAGTTACATCTCTCG
66 GAGCTCGGATGCCTAGTTACATCTCTCA
48323156 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
* *
48323221 GAGTTCGTATGCC
66 GAGCTCGGATGCC
48323234 CAAATATCCT
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 155 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAT
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:48323167 original size:47 final size:47
Alignment explanation
Indices: 48323015--48323183 Score: 166
Period size: 47 Copynumber: 3.6 Consensus size: 47
48323005 ATCCATAAGT
48323015 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * * * * ***
48323062 AAACTCGGACTCAACTCAACAAGTTCAGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTC-G-GATGC-CTAGTTACATCTCTC
* * *
48323108 GAACTCGAACTCAACTCGATGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
*
48323155 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
48323184 CATTCGCATC
Statistics
Matches: 90, Mismatches: 25, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 25 0.28
47 53 0.59
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:48326707 original size:15 final size:15
Alignment explanation
Indices: 48326689--48326718 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48326679 ATACATTTTC
48326689 ATAAACATCATTTAA
1 ATAAACATCATTTAA
*
48326704 ATAAATATCATTTAA
1 ATAAACATCATTTAA
48326719 GTCTAAACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (15 bp):
ATAAACATCATTTAA
Found at i:48335592 original size:46 final size:46
Alignment explanation
Indices: 48335493--48335663 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 46
48335483 GTTATTGTTG
* * ** *
48335493 GCTAGTGTAAGATATGTCGGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGAAGAGA
* * *
48335539 GCCAGTGTACGACATGTCTGGGACATGCATCGGCCTCAAGAAGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGAAG-AGA
* * * * *
48335585 GCTAGTGTAAGACATGTCTGGAACATGCATTGGCTACAA-ATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGAAGAGA
* *
48335630 G-TCAGTGTAAGACCATGTCTAGGATATGGCATCG
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCG
48335664 ACTTGAGATG
Statistics
Matches: 101, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
44 2 0.02
45 13 0.13
46 80 0.79
47 6 0.06
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGAAGAGA
Found at i:48336082 original size:17 final size:17
Alignment explanation
Indices: 48336056--48336089 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
48336046 TATATATTTG
*
48336056 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
48336073 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
48336090 TTAAGTGAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:48337444 original size:24 final size:24
Alignment explanation
Indices: 48337412--48337546 Score: 182
Period size: 24 Copynumber: 5.6 Consensus size: 24
48337402 GAAATGACAT
*
48337412 TGGCACTATGTGTGTGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
48337436 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
48337460 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* * *
48337484 TGGCACTACGTGTGTGGATTAGCAA
1 TGGCACTATGTGTGCGGATTTG-AA
* * *
48337509 -GGCACTATGTGTGCGGGTTAGCA
1 TGGCACTATGTGTGCGGATTTGAA
*
48337532 TGGTACTATGTGTGC
1 TGGCACTATGTGTGC
48337547 AAATTTCCTT
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 1 0.01
24 97 0.97
25 2 0.02
ACGTcount: A:0.20, C:0.13, G:0.34, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:48343843 original size:17 final size:17
Alignment explanation
Indices: 48343817--48343850 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
48343807 TATATATTTG
*
48343817 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
48343834 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
48343851 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:48346368 original size:49 final size:49
Alignment explanation
Indices: 48346309--48346490 Score: 211
Period size: 49 Copynumber: 3.7 Consensus size: 49
48346299 CTGGTATGCA
* * *
48346309 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCTGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
*
48346358 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * * * ** * *
48346407 TAGCAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATTATCCGGTACACG
* * *
48346458 TAGTAGCCTACACTTAGTATTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
48346491 TCACAATAGA
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 76 0.66
50 2 0.02
51 37 0.32
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:48348239 original size:24 final size:24
Alignment explanation
Indices: 48348212--48348392 Score: 247
Period size: 24 Copynumber: 7.5 Consensus size: 24
48348202 AATGACATTC
*
48348212 GCACTATATGTGCGGATTTGAATG
1 GCACTATGTGTGCGGATTTGAATG
* *
48348236 GCACTATGTGTGTGGATTTCAATG
1 GCACTATGTGTGCGGATTTGAATG
48348260 GCACTATGTGTGCGGATTTGAATG
1 GCACTATGTGTGCGGATTTGAATG
48348284 GCACTATGTGTGCGGATTTGAATG
1 GCACTATGTGTGCGGATTTGAATG
*
48348308 GCACTATGTGTGCGAATTTGAATG
1 GCACTATGTGTGCGGATTTGAATG
* * *
48348332 GCACTACGTGTGTGGATTAGCAA-G
1 GCACTATGTGTGCGGATTTG-AATG
* * * *
48348356 GCACTATGTGTACGGGTTAGCATG
1 GCACTATGTGTGCGGATTTGAATG
48348380 GCACTATGTGTGC
1 GCACTATGTGTGC
48348393 AAATTTCCTT
Statistics
Matches: 139, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
23 1 0.01
24 136 0.98
25 2 0.01
ACGTcount: A:0.22, C:0.14, G:0.31, T:0.32
Consensus pattern (24 bp):
GCACTATGTGTGCGGATTTGAATG
Found at i:48356510 original size:30 final size:30
Alignment explanation
Indices: 48356476--48356532 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
48356466 TTTTGAGCAT
* * *
48356476 AGGGGTAAAATGGTCATTTTGCCAAAGTTC
1 AGGGGCAAAATGATCATTTTACCAAAGTTC
48356506 AGGGGCAAAATGATCATTTTACCAAAG
1 AGGGGCAAAATGATCATTTTACCAAAG
48356533 ATGTGAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (30 bp):
AGGGGCAAAATGATCATTTTACCAAAGTTC
Found at i:48356925 original size:46 final size:46
Alignment explanation
Indices: 48356869--48357082 Score: 174
Period size: 46 Copynumber: 4.6 Consensus size: 46
48356859 GTTATTGTTG
*
48356869 GCTAGTGTAAGACATGTTTGGGACATGCATTGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGA
* *
48356915 GCCAGTGTAAGACCATGCCTGGGACATGGCA-T---CAGCATTGAGATGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCA-CATT---ATGAGA
* * * *
48356963 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATG-AGA
* * *
48357009 GCTAGTGTAAGACATGTCTGGAACATGCATT-GCCTACGA-GATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCC-AC-ATTATGAGA
*
48357055 G-TCAGTGTAAGACCATGTCTAGGACATG
1 GCT-AGTGTAAGA-CATGTCTGGGACATG
48357083 GCATCGACTT
Statistics
Matches: 137, Mismatches: 15, Indels: 31
0.75 0.08 0.17
Matches are distributed among these distances:
44 2 0.01
45 9 0.07
46 63 0.46
47 40 0.29
48 20 0.15
49 2 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGA
Found at i:48356984 original size:47 final size:47
Alignment explanation
Indices: 48356869--48357134 Score: 214
Period size: 47 Copynumber: 5.7 Consensus size: 47
48356859 GTTATTGTTG
*
48356869 GCTAGTGTAAGA-CATGTTTGGGACATGCATTGGCCA-CATT---ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCA-T---CAGCATTGAGATGAGA
* *
48356915 GCCAGTGTAAGACCATGCCTGGGACATGGCATCAGCATTGAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCAGCATTGAGATGAGA
* * * *
48356963 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGTGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCAGCATTGAGATG-AGA
* * * * *
48357009 GCTAGTGTAAGA-CATGTCTGGAACATGCAT-TGCCTACGAGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCAGCAT-TGAGATGAGA
* *
48357055 G-TCAGTGTAAGACCATGTCTAGGACATGGCATC-G-ACTTGAGATGTGA
1 GCT-AGTGTAAGACCATGTCTGGGACAT-GCATCAGCA-TTGAGATGAGA
*
48357102 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATC
48357135 GGCACCATAC
Statistics
Matches: 185, Mismatches: 20, Indels: 29
0.79 0.09 0.12
Matches are distributed among these distances:
44 2 0.01
45 10 0.05
46 71 0.38
47 76 0.41
48 26 0.14
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCAGCATTGAGATGAGA
Found at i:48357121 original size:140 final size:141
Alignment explanation
Indices: 48356869--48357137 Score: 386
Period size: 140 Copynumber: 1.9 Consensus size: 141
48356859 GTTATTGTTG
* * *
48356869 GCTAGTGTAAGACATGTTTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACCATGCC
1 GCTAGTGTAAGACATGTCTGGAACATGCATTGGCCACATGATGAGAGCCAGTGTAAGACCATGCC
* *
48356934 TGGGACATGGCATCAGCATTGAGATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCC
66 TAGGACATGGCATCAGCATTGAGATGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCC
48356998 TCGTGATGTAA
131 TCGTGATGTAA
* *
48357009 GCTAGTGTAAGACATGTCTGGAACATGCATT-GCCTACGA-GATGATAGTCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGAACATGCATTGGCC-AC-ATGATGAGAGCCAGTGTAAGACCATG
* *
48357072 TCTAGGACATGGCATC-G-ACTTGAGATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
64 CCTAGGACATGGCATCAGCA-TTGAGATGAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATC
48357135 GGC
127 GGC
48357138 ACCATACCCA
Statistics
Matches: 115, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
138 1 0.01
139 25 0.22
140 80 0.70
141 9 0.08
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (141 bp):
GCTAGTGTAAGACATGTCTGGAACATGCATTGGCCACATGATGAGAGCCAGTGTAAGACCATGCC
TAGGACATGGCATCAGCATTGAGATGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCC
TCGTGATGTAA
Found at i:48357135 original size:47 final size:47
Alignment explanation
Indices: 48356913--48357135 Score: 233
Period size: 47 Copynumber: 4.8 Consensus size: 47
48356903 CACATTATGA
* * *
48356913 GAGCCAGTGTAAGACCATGCCTGGGACATGGCATC-AGCATTGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TCGAGATGT
* * *
48356961 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGTGATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGATGT
* * * * *
48357007 AAGCTAGTGTAAGA-CATGTCTGGAACAT-GCATTGCCTACGAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGATG-T
* * *
48357054 -AGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATGT
48357100 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
48357136 GCACCATACC
Statistics
Matches: 149, Mismatches: 19, Indels: 15
0.81 0.10 0.08
Matches are distributed among these distances:
45 4 0.03
46 59 0.40
47 66 0.44
48 20 0.13
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATGT
Found at i:48360407 original size:39 final size:40
Alignment explanation
Indices: 48360237--48360477 Score: 375
Period size: 40 Copynumber: 6.1 Consensus size: 40
48360227 CAGAATTTAA
*
48360237 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
**
48360277 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
48360317 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
48360357 CCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
48360396 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48360435 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
48360475 CCG
1 CCG
48360478 TTATCATCCG
Statistics
Matches: 190, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
38 3 0.02
39 69 0.36
40 118 0.62
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48362261 original size:16 final size:16
Alignment explanation
Indices: 48362240--48362275 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
48362230 GTAGCTTCTT
48362240 CCATCCAGTGTTTGAG
1 CCATCCAGTGTTTGAG
*
48362256 CCATCCCGTGTTTGAG
1 CCATCCAGTGTTTGAG
48362272 CCAT
1 CCAT
48362276 AAAATCTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.31, G:0.22, T:0.31
Consensus pattern (16 bp):
CCATCCAGTGTTTGAG
Found at i:48382792 original size:28 final size:28
Alignment explanation
Indices: 48382761--48382904 Score: 116
Period size: 29 Copynumber: 5.1 Consensus size: 28
48382751 GAGCATGAAC
* *
48382761 ATAATATGATTTGGGCCAGATGGACCAT
1 ATAATATGAATTGGGCCAGATGGGCCAT
48382789 ATAA-ATGAGATTGGGCCTA-ATGGGCCAT
1 ATAATATGA-ATTGGGCC-AGATGGGCCAT
* *
48382817 ATGAATGTGAATTGGGCCTGATGGGCCAT
1 AT-AATATGAATTGGGCCAGATGGGCCAT
** * * *
48382846 ATGAACGTGAATTAGGTCGGATGGGCCAT
1 AT-AATATGAATTGGGCCAGATGGGCCAT
*
48382875 ATAA-ATGAGATTGGG-CATAGTGGGCCAT
1 ATAATATGA-ATTGGGCCAGA-TGGGCCAT
48382903 AT
1 AT
48382905 GCATGTATGT
Statistics
Matches: 97, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
27 9 0.09
28 38 0.39
29 47 0.48
30 3 0.03
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (28 bp):
ATAATATGAATTGGGCCAGATGGGCCAT
Found at i:48382800 original size:29 final size:28
Alignment explanation
Indices: 48382771--48382904 Score: 121
Period size: 28 Copynumber: 4.7 Consensus size: 28
48382761 ATAATATGAT
*
48382771 TTGGGCCAGATGGACCATATAAATGAGA
1 TTGGGCCAGATGGGCCATATAAATGAGA
* *
48382799 TTGGGCCTA-ATGGGCCATATGAATGTGAA
1 TTGGGCC-AGATGGGCCATATAAATGAG-A
* *
48382828 TTGGGCCTGATGGGCCATATGAACGTGA-A
1 TTGGGCCAGATGGGCCATAT-AA-ATGAGA
* * *
48382857 TTAGGTCGGATGGGCCATATAAATGAGA
1 TTGGGCCAGATGGGCCATATAAATGAGA
*
48382885 TTGGG-CATAGTGGGCCATAT
1 TTGGGCCAGA-TGGGCCATAT
48382905 GCATGTATGT
Statistics
Matches: 85, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
27 5 0.06
28 39 0.46
29 38 0.45
30 1 0.01
31 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.25
Consensus pattern (28 bp):
TTGGGCCAGATGGGCCATATAAATGAGA
Found at i:48387899 original size:12 final size:12
Alignment explanation
Indices: 48387882--48387909 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
48387872 CGTACACGCC
48387882 CGTGTGCTAGGT
1 CGTGTGCTAGGT
48387894 CGTGTGCTAGGT
1 CGTGTGCTAGGT
48387906 CGTG
1 CGTG
48387910 CCAATCCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.18, G:0.43, T:0.32
Consensus pattern (12 bp):
CGTGTGCTAGGT
Found at i:48393961 original size:16 final size:16
Alignment explanation
Indices: 48393940--48393977 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
48393930 TGGGGGACAG
48393940 CTTTTCATATTCTCAA
1 CTTTTCATATTCTCAA
48393956 CTTTTCATATTCTCAA
1 CTTTTCATATTCTCAA
*
48393972 TTTTTC
1 CTTTTC
48393978 CCTGTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (16 bp):
CTTTTCATATTCTCAA
Found at i:48399918 original size:27 final size:27
Alignment explanation
Indices: 48399888--48400065 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
48399878 ATATTGAGCC
* * *
48399888 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
48399915 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
*
48399942 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
** *
48399970 CGCACACTTAGTGCCGCATGGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
48399997 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
48400024 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
48400051 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48400066 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:48400027 original size:82 final size:81
Alignment explanation
Indices: 48399909--48400064 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
48399899 TGCTATATAA
* * * *
48399909 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
48399974 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* **
48399991 TCAACTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48400055 CACTTAGTGC
65 CACTTAGTGC
48400065 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 49 0.74
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48403435 original size:27 final size:27
Alignment explanation
Indices: 48403394--48403461 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
48403384 AGAGGTGATC
* *
48403394 ACTACCCTGTATTTGTTGT-TCGGGCAG
1 ACTACCCTGTGTTTGATGTCTC-GGCAG
*
48403421 ACTACCCAGTGTTTGATGTCTCGGCAG
1 ACTACCCTGTGTTTGATGTCTCGGCAG
48403448 ACTACCCTGTGTTT
1 ACTACCCTGTGTTT
48403462 ACTATCTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 34 0.94
28 2 0.06
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (27 bp):
ACTACCCTGTGTTTGATGTCTCGGCAG
Found at i:48403469 original size:27 final size:27
Alignment explanation
Indices: 48403416--48403469 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
48403406 TTGTTGTTCG
*
48403416 GGCAGACTACCCAGTGTTTGATGTCTC
1 GGCAGACTACCCAGTGTTTGATATCTC
*
48403443 GGCAGACTACCCTGTGTTT-ACTATCTC
1 GGCAGACTACCCAGTGTTTGA-TATCTC
48403470 AATGCACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (27 bp):
GGCAGACTACCCAGTGTTTGATATCTC
Found at i:48406251 original size:46 final size:46
Alignment explanation
Indices: 48406201--48406376 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
48406191 TGGTTGAGCA
48406201 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
48406247 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GTTG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
48406292 CATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
48406340 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48406377 GTGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48406357 original size:93 final size:93
Alignment explanation
Indices: 48406198--48406369 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
48406188 GGATGGTTGA
*
48406198 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
48406263 TGAGTCCGAGTTCGTGAGTTGTAACTAG
66 TGAGTCCGAGTTCGTGAGTTGTAACTAG
*
48406291 GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
48406355 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
48406370 CTTATGGGTG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGTTGTAACTAG
Found at i:48425106 original size:17 final size:17
Alignment explanation
Indices: 48425084--48425120 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
48425074 TAAGACAATG
*
48425084 GTTGTTCTTGGATAAGA
1 GTTGTTCTTGAATAAGA
*
48425101 GTTGTTCTTGAATAATA
1 GTTGTTCTTGAATAAGA
48425118 GTT
1 GTT
48425121 ATTTTAACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.46
Consensus pattern (17 bp):
GTTGTTCTTGAATAAGA
Found at i:48425340 original size:16 final size:16
Alignment explanation
Indices: 48425259--48425343 Score: 68
Period size: 16 Copynumber: 5.3 Consensus size: 16
48425249 AAAATACAAA
*
48425259 TTGTTCTAAACAAT-G
1 TTGTTCTAAACTATAG
48425274 ATTGTTCTAAAC-ATAG
1 -TTGTTCTAAACTATAG
*
48425290 TTGTTCCTAAAACT-TTG
1 TTGTT-CT-AAACTATAG
* * *
48425307 TTATTCTAAACAAGAG
1 TTGTTCTAAACTATAG
*
48425323 TTGTTCTAAACTTTAG
1 TTGTTCTAAACTATAG
48425339 TTGTT
1 TTGTT
48425344 ATCAAATAAC
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
15 11 0.20
16 34 0.62
17 10 0.18
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.44
Consensus pattern (16 bp):
TTGTTCTAAACTATAG
Found at i:48430334 original size:241 final size:232
Alignment explanation
Indices: 48429903--48430369 Score: 646
Period size: 241 Copynumber: 2.0 Consensus size: 232
48429893 ACATATATAC
*
48429903 CTATTATTATAATATATATTATAATAAAAGATATAGTATTACATGATATTATAATATTTAGTCAT
1 CTATTATTATAATATAGATTATAATAAAAGATATAGTATTACATGATATTATAATATTTAGTCAT
* * * *
48429968 TGATGCATATATGTAAACTATTAATATATTATATGATATGATACAACATTATATAATATAATAGG
66 TGATCCATATATATAAACTATTAATATATTATATAATATGATACAACATTATATAATATAATAAG
* * *
48430033 AGAGCTAACTTTCAAATGTACGAAAAGTATAGAGAATTAGATCATATTTCAACTAATATAATAAT
131 AGAGCTAACTTTCAAATATACGAAAAGTATAGAGAATTAGAGCATATTTCAACCAATATAATAAT
**
48430098 AAATGATAATATATGATAATAAGTAATATATAATGTA
196 AAACAATAATATATGATAATAAGTAATATATAATGTA
* * *
48430135 CTATTATTATAATATGGATTATAATAAATGATATAGTATTACATGATATTATAATGTTTAGTCAT
1 CTATTATTATAATATAGATTATAATAAAAGATATAGTATTACATGATATTATAATATTTAGTCAT
*
48430200 TGATCCATATATATATAAACTATTAATATAGTATATACTATATAATATGATATAACATTATATAA
66 TGATCC--ATATATATAAACTA-T--TA-A-TATAT--TATATAATATGATACAACATTATATAA
* * * * * *
48430265 TATAGTAAGAGGGCTAACTTTCAAATATGCTAAAAGTATAGGGATTTAGAGCATATTTCAACCAA
122 TATAATAAGAGAGCTAACTTTCAAATATACGAAAAGTATAGAGAATTAGAGCATATTTCAACCAA
* * *
48430330 TATAATAATAAACAATAATATATGGTACTAATTAATATAT
187 TATAATAATAAACAATAATATATGATAATAAGTAATATAT
48430370 TACATACTAC
Statistics
Matches: 203, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
232 66 0.33
234 13 0.06
235 1 0.00
237 2 0.01
238 1 0.00
239 5 0.02
241 115 0.57
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (232 bp):
CTATTATTATAATATAGATTATAATAAAAGATATAGTATTACATGATATTATAATATTTAGTCAT
TGATCCATATATATAAACTATTAATATATTATATAATATGATACAACATTATATAATATAATAAG
AGAGCTAACTTTCAAATATACGAAAAGTATAGAGAATTAGAGCATATTTCAACCAATATAATAAT
AAACAATAATATATGATAATAAGTAATATATAATGTA
Found at i:48430451 original size:16 final size:17
Alignment explanation
Indices: 48430420--48430463 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
48430410 ATGAAATAAT
* *
48430420 ATATTTTATAAGTATTA
1 ATATATTATAACTATTA
48430437 ATATA-TATAACTATTA
1 ATATATTATAACTATTA
*
48430453 TTATATTATAA
1 ATATATTATAA
48430464 ATTATAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
ATATATTATAACTATTA
Found at i:48433348 original size:14 final size:14
Alignment explanation
Indices: 48433329--48433361 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
48433319 TAAGAAAAAA
48433329 TAAATATAAATTAG
1 TAAATATAAATTAG
48433343 TAAATATAAATTAG
1 TAAATATAAATTAG
48433357 -AAATA
1 TAAATA
48433362 GAGTAATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (14 bp):
TAAATATAAATTAG
Found at i:48436959 original size:29 final size:29
Alignment explanation
Indices: 48436926--48436983 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
48436916 TTAAATATGC
*
48436926 TTAGTAAGTTCATATGTTTTAAACATAAA
1 TTAGTAAGTTCATATGGTTTAAACATAAA
48436955 TTAGTAAGTTCATATGGTTTAAACATAAA
1 TTAGTAAGTTCATATGGTTTAAACATAAA
48436984 GCTCACCTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (29 bp):
TTAGTAAGTTCATATGGTTTAAACATAAA
Found at i:48440080 original size:15 final size:17
Alignment explanation
Indices: 48440062--48440093 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
48440052 TGGCATAATT
48440062 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
48440077 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
48440094 CAAGTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:48443089 original size:40 final size:40
Alignment explanation
Indices: 48442901--48443125 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 40
48442891 TTGAATGATG
* * * *
48442901 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
48442941 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
48442981 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
48443021 TTCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
48443060 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
48443101 -CCGGGCTATGTCTCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48443126 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48443108 original size:79 final size:80
Alignment explanation
Indices: 48442901--48443125 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 80
48442891 TTGAATGATG
* * * * *
48442901 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATATCCGGGCTAAGACCCGAAGGCATT
48442965 TGTGCGAGATACTAAA
65 TGTGCGAGATACTAAA
* * *
48442981 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTTCAGGCTAAG-CCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-TCCGGGCTAAGACCCGAAGGCA
*
48443042 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
* * * * *
48443060 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCTCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGACCCGAAGGCATTT
48443125 G
66 G
48443126 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
78 2 0.02
79 66 0.55
80 43 0.36
81 9 0.07
82 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:48443124 original size:119 final size:120
Alignment explanation
Indices: 48442905--48443125 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
48442895 ATGATGTCCG
*
48442905 GGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGC
48442970 GAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTTCA
66 GAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTTCA
* * * **
48443025 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGT
* *
48443087 GCGA-ATTACTATAA-CCGGGCTATG-TCTCGAAGGCATTTG
64 GCGAGA-TACTA-AATCCGGACTAAGATC-CGAAGGCATTTG
48443126 AACGAGGAGC
Statistics
Matches: 88, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
118 4 0.05
119 68 0.77
120 16 0.18
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (120 bp):
GGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGC
GAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTTCA
Found at i:48446810 original size:30 final size:30
Alignment explanation
Indices: 48446776--48446836 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
48446766 TCCTTAACTC
48446776 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
48446806 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
48446836 A
1 A
48446837 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:48450920 original size:40 final size:40
Alignment explanation
Indices: 48450866--48450998 Score: 110
Period size: 39 Copynumber: 3.4 Consensus size: 40
48450856 GAATTCAATC
* * * * *
48450866 ACCAACACAAAGCCTACGGGACTTTAAGGTC-GGATATATT
1 ACCAGCACGAAGCCTACGGGACCTTAA-GTCTGAATATAGT
* *
48450906 ACCAGTACGAAGCCTGC-GGACCTTAAGTCTGAATATAGT
1 ACCAGCACGAAGCCTACGGGACCTTAAGTCTGAATATAGT
* * * * * *
48450945 ACTAGCACGAAGCCTAC-GGATCTTAAGTCCGGATACAAT
1 ACCAGCACGAAGCCTACGGGACCTTAAGTCTGAATATAGT
*
48450984 TCCAGCACGAAGCCT
1 ACCAGCACGAAGCCT
48450999 GTGGGTCTTT
Statistics
Matches: 75, Mismatches: 17, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
38 3 0.04
39 59 0.79
40 13 0.17
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (40 bp):
ACCAGCACGAAGCCTACGGGACCTTAAGTCTGAATATAGT
Found at i:48450942 original size:39 final size:39
Alignment explanation
Indices: 48450899--48451297 Score: 201
Period size: 39 Copynumber: 10.1 Consensus size: 39
48450889 TTAAGGTCGG
* *
48450899 ATATATTACCAGTACGAAGCCTGCGGACCTTAAGTCTGA
1 ATATATTACCAGCACGAAGCCTGCGGACCTTAAGTCCGA
* * * * *
48450938 ATATAGTACTAGCACGAAGCCTACGGATCTTAAGTCCGG
1 ATATATTACCAGCACGAAGCCTGCGGACCTTAAGTCCGA
* * * * *
48450977 ATACAATT-CCAGCACGAAGCCTGTGGGTCTTTAAG-CCCA
1 ATA-TATTACCAGCACGAAGCCTG-CGGACCTTAAGTCCGA
* * * * * * * *
48451016 GATACAATT-CCAGAAAGAAGCCTGTGGGTCTTTAAGCCCGG
1 -ATA-TATTACCAGCACGAAGCCTG-CGGACCTTAAGTCCGA
* *
48451057 ATACAATT-CCAGCACGAAGCCTGCGGACCTTAAGTCCGG
1 ATA-TATTACCAGCACGAAGCCTGCGGACCTTAAGTCCGA
* * * * * *
48451096 ATACAATT-CTAGCACAAAGCCTGCGGATCTTTAAGCCCGG
1 ATA-TATTACCAGCACGAAGCCTGCGGA-CCTTAAGTCCGA
* * * * *
48451136 ATATAATT-CCAGCA-TATAGCCTGGGGGTCTTTAAG-CCTGG
1 ATAT-ATTACCAGCACGA-AGCCT-GCGGACCTTAAGTCC-GA
* * * *
48451176 ATACAATT-CCAGCACGAAGCTTGCGGAACTTAAGTCCGG
1 ATA-TATTACCAGCACGAAGCCTGCGGACCTTAAGTCCGA
* *
48451215 ATACAATT-CCAGCACGAAGCTTGCGGACCTTAAGTCC-A
1 ATA-TATTACCAGCACGAAGCCTGCGGACCTTAAGTCCGA
* *
48451253 GATACAATT-CCAGCACGAAGCCTGCGGACCTTAAGTCCGG
1 -ATA-TATTACCAGCACGAAGCCTGCGGACCTTAAGTCCGA
48451293 ATATA
1 ATATA
48451298 CATCAAATAT
Statistics
Matches: 298, Mismatches: 48, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
38 1 0.00
39 175 0.59
40 116 0.39
41 6 0.02
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.23
Consensus pattern (39 bp):
ATATATTACCAGCACGAAGCCTGCGGACCTTAAGTCCGA
Found at i:48451022 original size:40 final size:40
Alignment explanation
Indices: 48450948--48451279 Score: 377
Period size: 40 Copynumber: 8.4 Consensus size: 40
48450938 ATATAGTACT
* * *
48450948 AGCACGAAGCCTACGGATC-TTAAGTCCGGATACAATTCC
1 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
* *
48450987 AGCACGAAGCCTGTGGGTCTTTAAGCCCAGATACAATTCC
1 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
* * *
48451027 AGAAAGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCC
1 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
* * * *
48451067 AGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCT
1 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
* * *
48451106 AGCACAAAGCCTGCGGATCTTTAAGCCCGGATATAATTCC
1 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
* * *
48451146 AGCA-TATAGCCTGGGGGTCTTTAAGCCTGGATACAATTCC
1 AGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
* ** *
48451186 AGCACGAAGCTTGCGGAAC-TTAAGTCCGGATACAATTCC
1 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
* * * * *
48451225 AGCACGAAGCTTGC-GGACCTTAAGTCCAGATACAATTCC
1 AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
48451264 AGCACGAAGCCTGCGG
1 AGCACGAAGCCTGCGG
48451280 ACCTTAAGTC
Statistics
Matches: 250, Mismatches: 37, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
38 3 0.01
39 115 0.46
40 131 0.52
41 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (40 bp):
AGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
Found at i:48451089 original size:119 final size:119
Alignment explanation
Indices: 48450948--48451276 Score: 448
Period size: 119 Copynumber: 2.8 Consensus size: 119
48450938 ATATAGTACT
* *
48450948 AGCACGAAGCCTACGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGC
1 AGCACGAAGCCTGCGGAACTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGC
*
48451013 CCAGATACAATTCCAGAAAGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCC
66 CCAGATACAATTCCAGAAAGAAGCCTGGGGGTCTTTAAGCCCGGATACAATTCC
* * * * *
48451067 AGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCTAGCACAAAGCCTGCGGATCTTTAAGC
1 AGCACGAAGCCTGCGGAACTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGC
* * * * *
48451132 CCGGATATAATTCCAGCATA-TAGCCTGGGGGTCTTTAAGCCTGGATACAATTCC
66 CCAGATACAATTCCAG-AAAGAAGCCTGGGGGTCTTTAAGCCCGGATACAATTCC
* * *
48451186 AGCACGAAGCTTGCGGAACTTAAGTCCGGATACAATTCCAGCACGAAG-CT-TGCGGACCTTAAG
1 AGCACGAAGCCTGCGGAACTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTG-GGTCTTTAAG
* * *
48451249 TCCAGATACAATTCCAGCACGAAGCCTG
65 CCCAGATACAATTCCAGAAAGAAGCCTG
48451277 CGGACCTTAA
Statistics
Matches: 180, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
117 1 0.01
118 29 0.16
119 148 0.82
120 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (119 bp):
AGCACGAAGCCTGCGGAACTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGC
CCAGATACAATTCCAGAAAGAAGCCTGGGGGTCTTTAAGCCCGGATACAATTCC
Found at i:48451215 original size:158 final size:158
Alignment explanation
Indices: 48450875--48451297 Score: 528
Period size: 158 Copynumber: 2.7 Consensus size: 158
48450865 CACCAACACA
* * ** * * * *
48450875 AAGCCTACGGGACTTTAAGGTCGGATA-TATTACCAGTACGAAGCCTGCGGACCTTAAGTCTGAA
1 AAGCCTGCGGAACTTTAAGCCCGGATACAATT-CCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
* * * * * *
48450939 TATAGTACTAGCACGAAGCCTACGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGTGGG
65 TACAATTCTAGCACGAAGCCTGCGGATCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGGGGG
48451004 TCTTTAAGCCCAGATACAATTCCAGAAAG
130 TCTTTAAGCCCAGATACAATTCCAGAAAG
* **
48451033 AAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTGCGGAACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * *
48451098 ACAATTCTAGCACAAAGCCTGCGGATCTTTAAGCCCGGATATAATTCCAGCA-TATAGCCTGGGG
66 ACAATTCTAGCACGAAGCCTGCGGATC-TTAAGTCCGGATATAATTCCAGCACGA-AGCCTGGGG
** * *
48451162 GTCTTTAAGCCTGGATACAATTCCAGCACG
129 GTCTTTAAGCCCAGATACAATTCCAGAAAG
* * * *
48451192 AAGCTTGCGGAAC-TTAAGTCCGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCAGAT
1 AAGCCTGCGGAACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* *
48451256 ACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATATA
66 ACAATTCTAGCACGAAGCCTGCGGATCTTAAGTCCGGATATA
48451298 CATCAAATAT
Statistics
Matches: 229, Mismatches: 33, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
157 14 0.06
158 147 0.64
159 68 0.30
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.22
Consensus pattern (158 bp):
AAGCCTGCGGAACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
ACAATTCTAGCACGAAGCCTGCGGATCTTAAGTCCGGATATAATTCCAGCACGAAGCCTGGGGGT
CTTTAAGCCCAGATACAATTCCAGAAAG
Found at i:48451299 original size:119 final size:117
Alignment explanation
Indices: 48450907--48451295 Score: 433
Period size: 119 Copynumber: 3.3 Consensus size: 117
48450897 GGATATATTA
* * * * * * * * *
48450907 CCAGTACGAAGCCTGCGGACCTTAAGTCTGAATATAGTACTAGCACGAAGCCTACGGATCTTAAG
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGAACTTAAG
*
48450972 TCCGGATACAATTCCAGCACGAAGCCTGTG-GGTCTTTAAGCCCAGATACAATT
66 TCCGGATACAATTCCAGCACGAAG-CT-TGCGGACTTTAAGCCCAGATACAATT
* * * * * * *
48451025 CCAGAAAGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAA
1 CCAGCACGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGAACTTAA
* * * * *
48451090 GTCCGGATACAATTCTAGCACAAAGCCTGCGGATCTTTAAGCCCGGATATAATT
65 GTCCGGATACAATTCCAGCACGAAGCTTGCGGA-CTTTAAGCCCAGATACAATT
* * * * *
48451144 CCAGCA-TATAGCCTGGGGGTCTTTAAG-CCTGGATACAATTCCAGCACGAAGCTTGCGGAACTT
1 CCAGCACGA-AGCCT-GCGGACCTTAAGTCC-GGATACAATTCCAGCACGAAGCCTGCGGAACTT
* *
48451207 AAGTCCGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCAGATACAATT
63 AAGTCCGGATACAATTCCAGCACGAAGCTTGCGGACTTTAAGCCCAGATACAATT
48451262 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATA
48451296 TACATCAAAT
Statistics
Matches: 228, Mismatches: 35, Indels: 17
0.81 0.12 0.06
Matches are distributed among these distances:
117 16 0.07
118 48 0.21
119 163 0.71
120 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (117 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGAACTTAAG
TCCGGATACAATTCCAGCACGAAGCTTGCGGACTTTAAGCCCAGATACAATT
Found at i:48454381 original size:48 final size:47
Alignment explanation
Indices: 48454284--48454460 Score: 142
Period size: 48 Copynumber: 3.7 Consensus size: 47
48454274 GTAAATTGTT
* * * * * * * *
48454284 GATGTCATGTCCCAGACATGGTTTTAGACTGGCTCACATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TATCAATGCC
* * *
48454332 GATGCCATGTCCTAGACATGGTTTTACACTAGCTCTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TATCAATGCC
* * * * * *
48454380 GATGCTATATCCTAGACATGGTCTTACATTGGCTCTC-AT-AATGTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATCAA--T-GCC
48454428 GATGCCATGTCCCAGACATGGTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
48454461 ACACATATCA
Statistics
Matches: 105, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
45 2 0.02
46 1 0.01
47 1 0.01
48 101 0.96
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATCAATGCC
Found at i:48456674 original size:48 final size:48
Alignment explanation
Indices: 48456616--48457265 Score: 1039
Period size: 48 Copynumber: 13.4 Consensus size: 48
48456606 ATATACACAC
* * *
48456616 ATCTCCTACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48456664 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48456712 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48456760 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* * * * *
48456810 TTGTCATGCATATTTCACATTAGCGATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
48456858 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48456906 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48456954 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* *
48457004 TTCTCATGCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
48457052 ATCTCATATATATTTCACAGTAGCCATTCAGCTTTGCCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
48457100 ATCTCATATATTTTTCACAGTAGGCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
48457148 ATCTCATACTTATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48457196 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
48457246 TTCTCATACATATTTCACAT
1 ATCTCATACATATTTCACAT
48457266 ATTCACTACA
Statistics
Matches: 558, Mismatches: 38, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
48 442 0.79
50 116 0.21
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:48456841 original size:194 final size:194
Alignment explanation
Indices: 48456624--48457264 Score: 1088
Period size: 194 Copynumber: 3.3 Consensus size: 194
48456614 ACATCTCCTA
* *
48456624 CATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
1 CATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCC
*
48456689 ATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
66 ATTCGGCTTTGCCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
*
48456754 ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTGTCATG
131 ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATG
* *
48456818 CATATTTCACATTAGCGATTCAGCTTTACCACATATACATATCTCATATATATTTCACAGTAGCC
1 CATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCC
48456883 ATTCGGCTTTGCCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
66 ATTCGGCTTTGCCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
48456948 ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATG
131 ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATG
* *
48457012 CATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACAGTAGCC
1 CATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCC
* * * * *
48457077 ATTCAGCTTTGCCACATATACATATCTCATATATTTTTCACAGTAGGCATTCGGCTTTACCACAT
66 ATTCGGCTTTGCCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
* * *
48457142 ATACATATCTCATACTTATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATA
131 ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATG
* *
48457204 CATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACA
1 CATATTTCACATTAGCCATTCAGCTTTACCAC--ATATACATATCTCATACATATTTCACA
48457265 TATTCACTAC
Statistics
Matches: 427, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
192 46 0.11
194 381 0.89
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (194 bp):
CATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACAGTAGCC
ATTCGGCTTTGCCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATG
Found at i:48457050 original size:242 final size:243
Alignment explanation
Indices: 48456616--48457265 Score: 1117
Period size: 242 Copynumber: 2.7 Consensus size: 243
48456606 ATATACACAC
* * * *
48456616 ATCTCCTACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
48456681 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
*
48456746 TACCAC--ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACA
131 TACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA-ATATACA
* * * * *
48456809 TTTGTCATGCATATTTCACATTAGCGATTCAGCTTTACCACATATACAT
195 TATCTCATACATATTTCACAGTAGCCATTCAGCTTTACCACATATACAT
*
48456858 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACATATCTCATACATATTTCA
1 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
48456923 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
*
48456988 TACCACATATATACATTTCTCATGCATATTTCACATTAGCCATTCGGCTTTACCAC-ATATACAT
131 TACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAATATACAT
* *
48457052 ATCTCATATATATTTCACAGTAGCCATTCAGCTTTGCCACATATACAT
196 ATCTCATACATATTTCACAGTAGCCATTCAGCTTTACCACATATACAT
* * *
48457100 ATCTCATATATTTTTCACAGTAGGCATTCGGCTTTACCACATATACATATCTCATACTTATTTCA
1 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
48457165 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
48457230 TACCACATATATACATTTCTCATACATATTTCACAT
131 TACCACATATATACATTTCTCATACATATTTCACAT
48457266 ATTCACTACA
Statistics
Matches: 387, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
242 341 0.88
244 46 0.12
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.36
Consensus pattern (243 bp):
ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
TACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAATATACAT
ATCTCATACATATTTCACAGTAGCCATTCAGCTTTACCACATATACAT
Found at i:48460577 original size:28 final size:27
Alignment explanation
Indices: 48460486--48460585 Score: 92
Period size: 28 Copynumber: 3.6 Consensus size: 27
48460476 CTGACTGATT
** *
48460486 TCGCACACATAGCACTCGATTAGAGAAC
1 TCGCACACATAGTGCTCAATTA-AGAAC
**
48460514 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTG-CTCAATTAAGAA-C
*
48460543 TCGCACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTCAATT-AAGAAC
* *
48460571 TTGCACACACAGTGC
1 TCGCACACATAGTGC
48460586 CTCATAACTC
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 34 0.58
29 25 0.42
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (27 bp):
TCGCACACATAGTGCTCAATTAAGAAC
Found at i:48460661 original size:40 final size:40
Alignment explanation
Indices: 48460617--48460985 Score: 568
Period size: 40 Copynumber: 9.2 Consensus size: 40
48460607 CCTTCGAGGT
* * *
48460617 TTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
48460657 TTAGCCCGGATACATTATTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
48460697 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
48460737 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
48460777 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
*
48460817 TTAGCCCGGATAGATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
48460857 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
* * *
48460897 TTAGCTCGGAT--ATAACATCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATTAC-T-AGCACGAATGCTCTTCGGAAC
*
48460937 TTAGCCCGGCTATAACA-T-C-AGCACGAATGCTCTTCGGGAC
1 TTAGCCCGG--AT-ACATTACTAGCACGAATGCTCTTCGGAAC
48460977 TTAGCCCGG
1 TTAGCCCGG
48460986 CTATATAACT
Statistics
Matches: 308, Mismatches: 14, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
38 4 0.01
39 1 0.00
40 299 0.97
42 2 0.01
43 1 0.00
45 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
Found at i:48462543 original size:48 final size:48
Alignment explanation
Indices: 48462485--48463082 Score: 977
Period size: 48 Copynumber: 12.4 Consensus size: 48
48462475 ATATACACAC
* *
48462485 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48462533 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48462581 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
48462629 -TCTCATGCATATTTCACATTAGCCATTC-GCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
48462675 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48462723 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48462771 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* *
48462821 TTCTCATGCATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
48462869 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
48462917 ATCTCATATATTTTTCATAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
48462965 ATCTCATA-ATTATTTCACATTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACA-TATTTCACATTAGCCATTCGGCTTTACCACATATACAT
48463013 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
48463063 TTCTCATACATATTTCACAT
1 ATCTCATACATATTTCACAT
48463083 ATTCACTACA
Statistics
Matches: 516, Mismatches: 26, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
46 18 0.03
47 53 0.10
48 371 0.72
49 1 0.00
50 73 0.14
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Done.