Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 151 of 253
Found at i:48462994 original size:242 final size:240
Alignment explanation
Indices: 48462485--48463082 Score: 1040
Period size: 242 Copynumber: 2.5 Consensus size: 240
48462475 ATATACACAC
* *
48462485 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
48462550 CATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTTCACATTAGCCATTCGGC
66 CATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGC
* *
48462613 TTTACCACATATACATTCTCATGCATATTTCACATTAGCCATTCGCTTTACCACATATACATATC
131 TTTACCACATATACATTCTCATACATATTTCACAGTAGCCATTCGCTTTACCACATATACATATC
*
48462678 TCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACAT
196 TCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
48462723 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
48462788 CATTAGCCATTCGGCTTTACCACATATATACATTTCTCATGCATATTTCACATTAGCCATTCGGC
66 CATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGC
* *
48462853 TTTACCACATATACATATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACATA
131 TTTACCACATATACAT-TCTCATACATATTTCACAGTAGCCATTC-GCTTTACCACATATACATA
* *
48462918 TCTCATATATTTTTCATAGTAGCCATTCGGCTTTACCACATATACAT
194 TCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
*
48462965 ATCTCATA-ATTATTTCACATTATCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
1 ATCTCATACA-TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
48463029 ACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACAT
65 ACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACAT
48463083 ATTCACTACA
Statistics
Matches: 342, Mismatches: 13, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
238 86 0.25
240 54 0.16
241 26 0.08
242 176 0.51
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.37
Consensus pattern (240 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGC
TTTACCACATATACATTCTCATACATATTTCACAGTAGCCATTCGCTTTACCACATATACATATC
TCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
Found at i:48469799 original size:40 final size:40
Alignment explanation
Indices: 48469744--48470017 Score: 305
Period size: 40 Copynumber: 6.8 Consensus size: 40
48469734 GGGTTACTAG
* * * * *
48469744 AGTATAAACAAGGGCACGTAAGTGCATTCAGGGGTACCGA
1 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAA
* * * * * *
48469784 AGTACAAATAGGGGCACATATGTCCAATCAAGAGTACCGA
1 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAA
48469824 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAA
1 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAA
* *
48469864 AGTACAAACAGGGGCAAGTATGTGCAATTAGGGGTACCAA
1 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAA
* * * * * *
48469904 AGTAAAAAATAGGGGCAAGTATGTGCAATCAGAGGTATCGA
1 AGT-ACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAA
* * * * *
48469945 AGTACAAACAAGGGCATGTATGTGTAATTAGGGGTACTAA
1 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAA
* *
48469985 AGTACAAACAGGGGTACGTATGTTCAATCAGGG
1 AGTACAAACAGGGGCACGTATGTGCAATCAGGG
48470018 ATAATTATCT
Statistics
Matches: 194, Mismatches: 39, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
40 160 0.82
41 34 0.18
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.19
Consensus pattern (40 bp):
AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAA
Found at i:48469857 original size:20 final size:20
Alignment explanation
Indices: 48469832--48469897 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
48469822 GAAGTACAAA
48469832 CAGGGGCACGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* ** * * *
48469852 CAGGGGTACCAAAGTACAAA
1 CAGGGGCACGTATGTGCAAT
*
48469872 CAGGGGCAAGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
*
48469892 TAGGGG
1 CAGGGG
48469898 TACCAAAGTA
Statistics
Matches: 32, Mismatches: 14, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.32, C:0.17, G:0.35, T:0.17
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCAAT
Found at i:48469954 original size:121 final size:120
Alignment explanation
Indices: 48469744--48470017 Score: 347
Period size: 121 Copynumber: 2.3 Consensus size: 120
48469734 GGGTTACTAG
* * * * *
48469744 AGTATAAACAAGGGCACGTAAGTGC-ATTCAGGGGTACCGAAGTACAAATAGGGGCACATATGTC
1 AGTACAAACAGGGGCACGTATGTGCAATT-AGGGGTACCAAAGTAAAAATAGGGGCACATATGTC
*
48469808 CAATCAAGAGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACCAA
65 CAATCAAGAGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAGGGGTACCAA
*
48469864 AGTACAAACAGGGGCAAGTATGTGCAATTAGGGGTACCAAAGTAAAAAATAGGGGCA-AGTATGT
1 AGTACAAACAGGGGCACGTATGTGCAATTAGGGGTACCAAAGT-AAAAATAGGGGCACA-TATGT
* * * * * *
48469928 GCAATC-AGAGGTATCGAAGTACAAACAAGGGCATGTATGTGTAATTAGGGGTACTAA
64 CCAATCAAGA-GTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAGGGGTACCAA
* * *
48469985 AGTACAAACAGGGGTACGTATGTTCAATCAGGG
1 AGTACAAACAGGGGCACGTATGTGCAATTAGGG
48470018 ATAATTATCT
Statistics
Matches: 133, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
120 38 0.29
121 95 0.71
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.19
Consensus pattern (120 bp):
AGTACAAACAGGGGCACGTATGTGCAATTAGGGGTACCAAAGTAAAAATAGGGGCACATATGTCC
AATCAAGAGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAGGGGTACCAA
Found at i:48471668 original size:26 final size:27
Alignment explanation
Indices: 48471639--48471721 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
48471629 TGCCAGAAAT
48471639 AGTAAATGTGGCA-AGCCACCAGTATC
1 AGTAAATGTGGCATAGCCACCAGTATC
* *
48471665 AGTAATTGTGGCATAGCCACCAATAAT-
1 AGTAAATGTGGCATAGCCACCAGT-ATC
* * *
48471692 AGTGAATGTGACATAGTCACCAGTA-C
1 AGTAAATGTGGCATAGCCACCAGTATC
48471718 AGTA
1 AGTA
48471722 CTTCCACCAT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
26 16 0.35
27 28 0.61
28 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (27 bp):
AGTAAATGTGGCATAGCCACCAGTATC
Found at i:48471887 original size:27 final size:27
Alignment explanation
Indices: 48471857--48471947 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
48471847 GGGCGTAATT
*
48471857 GTCATTTTACCCTATAGGGGTATTATC-
1 GTCATTTTACCCTACAGGGGTATT-TCA
48471884 GTCATTTTACCCTACAGGGGTATTTCA
1 GTCATTTTACCCTACAGGGGTATTTCA
** *
48471911 GTCATTTTATGCTACAAGGGTATTTCA
1 GTCATTTTACCCTACAGGGGTATTTCA
*
48471938 GTAATTTTAC
1 GTCATTTTAC
48471948 AATCTGAGGG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.04
27 55 0.96
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTTCA
Found at i:48471957 original size:27 final size:27
Alignment explanation
Indices: 48471927--48472039 Score: 140
Period size: 27 Copynumber: 4.2 Consensus size: 27
48471917 TTATGCTACA
48471927 AGGGTATTTCAGTAATTTTAC-AATCTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* * *
48471954 AGGGTATTTCGGTAATTTCACAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
48471981 AGGATATTTCAGTAATTTTAC-AACCT
1 AGGGTATTTCAGTAATTTTACAAATCG
48472007 AGGGGTATTTCAGTAATTTTACAAATCG
1 A-GGGTATTTCAGTAATTTTACAAATCG
48472035 AGGGT
1 AGGGT
48472040 CTTAATGACC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.06
27 60 0.83
28 8 0.11
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:48471959 original size:54 final size:54
Alignment explanation
Indices: 48471899--48472033 Score: 168
Period size: 54 Copynumber: 2.5 Consensus size: 54
48471889 TTTACCCTAC
* * * *
48471899 AGGGGTATTTCAGTCATTTTATGC-TA-CAAGGGTATTTCAGTAATTTTACAATCT
1 AGGGGTATTTCAGTAATTTTA--CAAATCAAGGATATTTCAGTAATTTTACAACCT
* *
48471953 -GAGGGTATTTCGGTAATTTCACAAATCAAGGATATTTCAGTAATTTTACAACCT
1 AG-GGGTATTTCAGTAATTTTACAAATCAAGGATATTTCAGTAATTTTACAACCT
48472007 AGGGGTATTTCAGTAATTTTACAAATC
1 AGGGGTATTTCAGTAATTTTACAAATC
48472034 GAGGGTCTTA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
52 1 0.01
53 2 0.03
54 65 0.94
55 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTCAGTAATTTTACAAATCAAGGATATTTCAGTAATTTTACAACCT
Found at i:48478522 original size:15 final size:16
Alignment explanation
Indices: 48478488--48478524 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
48478478 CTAAAAAAGG
*
48478488 AAAAGGAAGATGACTA
1 AAAAGGAAGAGGACTA
48478504 AAAAGGAAGAGGACTA
1 AAAAGGAAGAGGACTA
48478520 AAAAG
1 AAAAG
48478525 ACAAATGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.59, C:0.05, G:0.27, T:0.08
Consensus pattern (16 bp):
AAAAGGAAGAGGACTA
Found at i:48484578 original size:34 final size:34
Alignment explanation
Indices: 48484540--48484621 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 34
48484530 TTTGGGCATA
* *
48484540 AGCCC-TTATCAGTAGCAATATCAGTGTGGGCCTT
1 AGCCCATTA-CAGTAACAATAGCAGTGTGGGCCTT
* * *
48484574 AGCCCATTACGGTAATAGTAGCAGTGTGGGCCTT
1 AGCCCATTACAGTAACAATAGCAGTGTGGGCCTT
48484608 AGCCCAATT-CAGTA
1 AGCCC-ATTACAGTA
48484622 CAGTATTAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
34 34 0.85
35 6 0.15
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (34 bp):
AGCCCATTACAGTAACAATAGCAGTGTGGGCCTT
Found at i:48486408 original size:22 final size:24
Alignment explanation
Indices: 48486382--48486430 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
48486372 CCCTCTCTCA
* *
48486382 CCTCAACTCTC-CCA-AATCCTCT
1 CCTCAAATCTCTCCACAATCCCCT
48486404 CCTCAAATCTCTCCACAATCCCCT
1 CCTCAAATCTCTCCACAATCCCCT
48486428 CCT
1 CCT
48486431 AAGGTTCAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 10 0.43
23 3 0.13
24 10 0.43
ACGTcount: A:0.22, C:0.51, G:0.00, T:0.27
Consensus pattern (24 bp):
CCTCAAATCTCTCCACAATCCCCT
Found at i:48487332 original size:47 final size:49
Alignment explanation
Indices: 48487211--48487337 Score: 134
Period size: 47 Copynumber: 2.7 Consensus size: 49
48487201 TAAGTTATAG
* **
48487211 CTTGATTTGGCTACAGGCCATGGTATAAGTA-TTTTGGAGAATAGTTAC
1 CTTGATTTGGCTACGGGCCATGGTATAAGTACTTCAGGAGAATAGTTAC
* * * * * * *
48487259 CTTGATTTGGTTATGGGTCATTGTATAGGTACTTCAGGA-TA-AGTTTC
1 CTTGATTTGGCTACGGGCCATGGTATAAGTACTTCAGGAGAATAGTTAC
*
48487306 CTTGATTTGGCTACGGGCCATGGTATACGTAC
1 CTTGATTTGGCTACGGGCCATGGTATAAGTAC
48487338 GTATCAATTG
Statistics
Matches: 63, Mismatches: 15, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
47 32 0.51
48 26 0.41
49 5 0.08
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (49 bp):
CTTGATTTGGCTACGGGCCATGGTATAAGTACTTCAGGAGAATAGTTAC
Found at i:48487696 original size:19 final size:18
Alignment explanation
Indices: 48487667--48487716 Score: 82
Period size: 19 Copynumber: 2.7 Consensus size: 18
48487657 GTATATATTT
48487667 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
48487685 TAAATCTTATTTAGGTAGA
1 TAAAT-TTATTTAGGTAGA
48487704 TAAATTTTATTTA
1 TAAA-TTTATTTA
48487717 TATTCTAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.17
19 24 0.80
20 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:48489353 original size:40 final size:40
Alignment explanation
Indices: 48489279--48489489 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
48489269 TCTTCAGAAT
** * *
48489279 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
48489317 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
48489357 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
48489397 TTAGCCTGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
48489437 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
48489477 TTAGCCCGGATAT
1 TTAGCCCGGATAT
48489490 CATTCGAATA
Statistics
Matches: 146, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
38 4 0.03
39 16 0.11
40 125 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:48495133 original size:19 final size:19
Alignment explanation
Indices: 48495087--48495134 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
48495077 GTATATATTT
48495087 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
48495105 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
48495124 TAGATTTTATT
1 TAAATTTTATT
48495135 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:48495219 original size:42 final size:42
Alignment explanation
Indices: 48495159--48495242 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
48495149 ATTTTTATGT
* * *
48495159 TTATGTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
1 TTATGTTTTAGCAATTTATTAAAATAAGGGAACTATTTTCCC
48495201 TTATGTTTTAGCAATTTATTAAAATAAGGGAACTATTTTCCC
1 TTATGTTTTAGCAATTTATTAAAATAAGGGAACTATTTTCCC
48495243 AATTAGGAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (42 bp):
TTATGTTTTAGCAATTTATTAAAATAAGGGAACTATTTTCCC
Found at i:48498311 original size:17 final size:17
Alignment explanation
Indices: 48498289--48498322 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
48498279 AAAAGACTAT
48498289 GAATTAGTAATTGGCTA
1 GAATTAGTAATTGGCTA
48498306 GAATTAGTAATTGGCTA
1 GAATTAGTAATTGGCTA
48498323 TCATCCGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (17 bp):
GAATTAGTAATTGGCTA
Found at i:48504630 original size:251 final size:252
Alignment explanation
Indices: 48504180--48504688 Score: 742
Period size: 251 Copynumber: 2.0 Consensus size: 252
48504170 GACACTTTCT
* *
48504180 TGGAAATGTTCAGGATCGATCTTGGGGTTCAAGATTTCAGATTTGGGGATTATTTAGATGATAAT
1 TGGAAATGTTCAGGATCGATCTTGGGGTTCAAAATTTCAGATTTGGGGATGATTTAGATGATAAT
48504245 AGATGGAAAAAATATTAAAGGAGATGGTGCACAATCTTGATGCAAAAAGAAGAAGAAAGAGATGG
66 AGATGGAAAAAATATTAAA-GAGA----G-ACAATCTTGATGCAAAAAGAAGAAGAAAGAGATGG
48504310 CAAAATGGGAGGTGTAGGCAACAACAACAATGGGAGAAAGAAAGAAAATTGAAGAGAAAAGAAGA
125 CAAAATGGGAGGTGTAGGCAACAACAACAATGGGAGAAAGAAAGAAAATTGAAGAGAAAAGAAGA
* * * *
48504375 GAGGATGAGGGTGAACAGCT-GCGGTAGGGAAAACTTGAATTAAAGGCTAAAAAATAAAATAAA
190 GAGGAAGAGGGTGAACAACTAG-GGTACGAAAAACTTGAATTAAAGGCTAAAAAATAAAATAAA
* *
48504438 TGGAAATGTTCAGGGTCGATCTTGGGGTTCAAAATTTCATATTTGGGGATGATTTAGATGATAAT
1 TGGAAATGTTCAGGATCGATCTTGGGGTTCAAAATTTCAGATTTGGGGATGATTTAGATGATAAT
*
48504503 ATATGGCAAAAAAAATATT-AA-A-A-ACAATCTTGATGCAAAAAGAAGAAGAAAGAGATGGCAA
66 AGATGG---AAAAAATATTAAAGAGAGACAATCTTGATGCAAAAAGAAGAAGAAAGAGATGGCAA
* * *
48504564 AATGGGAGGTGTAGGGAACGACAACAATGGGATAAAGAAAGAAAATTGAAGAGAAAA-AAGGAGA
128 AATGGGAGGTGTAGGCAACAACAACAATGGGAGAAAGAAAGAAAATTGAAGAGAAAAGAA-GAGA
* * *
48504628 GGAAGAGGGTGAACAATTAGGGTACGAAAAACTTGAATTGAAGGCTAAAATATAAAATAAA
192 GGAAGAGGGTGAACAACTAGGGTACGAAAAACTTGAATTAAAGGCTAAAAAATAAAATAAA
48504689 AAGTTGTATT
Statistics
Matches: 231, Mismatches: 15, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
250 2 0.01
251 148 0.64
252 1 0.00
257 1 0.00
258 67 0.29
260 2 0.01
261 10 0.04
ACGTcount: A:0.45, C:0.07, G:0.27, T:0.21
Consensus pattern (252 bp):
TGGAAATGTTCAGGATCGATCTTGGGGTTCAAAATTTCAGATTTGGGGATGATTTAGATGATAAT
AGATGGAAAAAATATTAAAGAGAGACAATCTTGATGCAAAAAGAAGAAGAAAGAGATGGCAAAAT
GGGAGGTGTAGGCAACAACAACAATGGGAGAAAGAAAGAAAATTGAAGAGAAAAGAAGAGAGGAA
GAGGGTGAACAACTAGGGTACGAAAAACTTGAATTAAAGGCTAAAAAATAAAATAAA
Found at i:48508743 original size:27 final size:27
Alignment explanation
Indices: 48508724--48508828 Score: 156
Period size: 27 Copynumber: 3.9 Consensus size: 27
48508714 ATTACTAAAG
* *
48508724 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* **
48508751 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
48508778 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
48508805 TACCCTCGATTTACAGAATTACTA
1 TACCCTCGATTTACAGAATTACTA
48508829 AAATACATTT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:48508771 original size:54 final size:54
Alignment explanation
Indices: 48508713--48508830 Score: 173
Period size: 54 Copynumber: 2.2 Consensus size: 54
48508703 CAATTTGGAA
48508713 AATTACTAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
1 AATTACTAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
***** * *
48508767 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAG
1 AATTACTAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
48508821 AATTACTAAA
1 AATTACTAAA
48508831 ATACATTTGG
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACTAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
Found at i:48508863 original size:54 final size:53
Alignment explanation
Indices: 48508805--48508972 Score: 140
Period size: 54 Copynumber: 3.1 Consensus size: 53
48508795 ATTACTATTT
* * *
48508805 TACCCTCGATTTACAGAATTACTAAAATACATTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACA-CTGGTTTACAAAATTACCAAAA
* ** * *** *
48508859 TACCC-CTAGTTTTTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTACAAAATTACCAAAATA-CACTGGTTTACAAAATTACCAAAA
* ** * * *
48508913 TACCCTCAATTTGTAAAATTACCAAAATACCTCTGATTTACAAAATTACAAAAA
1 TACCCTCGATTTACAAAATTACCAAAATA-CACTGGTTTACAAAATTACCAAAA
48508967 TACCCT
1 TACCCT
48508973 TGACTTTCTA
Statistics
Matches: 90, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
53 2 0.02
54 84 0.93
55 4 0.04
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACCAAAATACACTGGTTTACAAAATTACCAAAA
Found at i:48508870 original size:27 final size:27
Alignment explanation
Indices: 48508840--48508971 Score: 133
Period size: 27 Copynumber: 4.9 Consensus size: 27
48508830 AATACATTTG
*
48508840 GTTTACAAAATTACCAAAATACCCCTA
1 GTTTATAAAATTACCAAAATACCCCTA
* *
48508867 GTTTTTAAAATTACCAAAATACCACTA
1 GTTTATAAAATTACCAAAATACCCCTA
* * *
48508894 GTTTGTGAAATTACCGAAATA-CCCTCA
1 GTTTATAAAATTACCAAAATACCCCT-A
* * *
48508921 ATTTGTAAAATTACCAAAATACCTCT-
1 GTTTATAAAATTACCAAAATACCCCTA
* *
48508947 GATTTACAAAATTACAAAAATACCC
1 G-TTTATAAAATTACCAAAATACCC
48508972 TTGACTTTCT
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
26 3 0.03
27 80 0.93
28 3 0.03
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (27 bp):
GTTTATAAAATTACCAAAATACCCCTA
Found at i:48509022 original size:27 final size:27
Alignment explanation
Indices: 48508983--48509034 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
48508973 TGACTTTCTA
*
48508983 AAAATTATAGAAATGCCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
48509010 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
48509035 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:48509152 original size:27 final size:27
Alignment explanation
Indices: 48509088--48509152 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
48509078 ACCCTTAATA
*
48509088 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
48509115 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
48509142 GGTAAAATGAC
1 GGTAAAATGAC
48509153 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:48510000 original size:25 final size:25
Alignment explanation
Indices: 48509962--48510031 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
48509952 AGGAAGAGAT
* *
48509962 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
48509987 AAAAGGGCTTTGCCTCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
48510012 AAAAAGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
48510032 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:48510033 original size:24 final size:25
Alignment explanation
Indices: 48509962--48510056 Score: 84
Period size: 25 Copynumber: 3.8 Consensus size: 25
48509952 AGGAAGAGAT
* * *
48509962 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAAGGCTATGCCCCAGTTTATCA
* * *
48509987 AAAAGGGCTTTGCCTCAGTTTATCA
1 AAAAAGGCTATGCCCCAGTTTATCA
* *
48510012 AAAAAGGCTTTGCCCCAG-TTATTA
1 AAAAAGGCTATGCCCCAGTTTATCA
* *
48510036 AAAGAGGCTAGGCCTCCAGTT
1 AAAAAGGCTATGCC-CCAGTT
48510057 ATATGATAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
24 16 0.28
25 41 0.71
26 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAAGGCTATGCCCCAGTTTATCA
Found at i:48512102 original size:15 final size:16
Alignment explanation
Indices: 48512066--48512102 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
48512056 ACATATCATT
48512066 TATTTCATTATATCAA
1 TATTTCATTATATCAA
48512082 TATTTCA-TATA-CAA
1 TATTTCATTATATCAA
48512096 TAGTTTC
1 TA-TTTC
48512103 CATGTATTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.35, C:0.14, G:0.03, T:0.49
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:48516263 original size:24 final size:24
Alignment explanation
Indices: 48516231--48516295 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
48516221 CACCTCGTTA
*
48516231 ACAAATTTATTCATTTTTATGTAG
1 ACAAATTTATTCATTTTTATGTAC
* *
48516255 ACAAGTTTATTCATTTTTTTGTAC
1 ACAAATTTATTCATTTTTATGTAC
*
48516279 ACAAATTTATTCCTTTT
1 ACAAATTTATTCATTTT
48516296 ATTATTTTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (24 bp):
ACAAATTTATTCATTTTTATGTAC
Found at i:48519770 original size:20 final size:20
Alignment explanation
Indices: 48519745--48519782 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
48519735 ACTCAAAACT
48519745 ATAAAAAT-TATTATAAATGA
1 ATAAAAATATA-TATAAATGA
48519765 ATAAAAATATATATAAAT
1 ATAAAAATATATATAAAT
48519783 TATGAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (20 bp):
ATAAAAATATATATAAATGA
Found at i:48519771 original size:29 final size:28
Alignment explanation
Indices: 48519718--48519785 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 28
48519708 AAACATTATA
* * *
48519718 AAAAATTATTATAAATTACTCAAAACTAT
1 AAAAATTATTATAAATGAAT-AAAAATAT
48519747 AAAAATTATTATAAATGAATAAAAATAT
1 AAAAATTATTATAAATGAATAAAAATAT
48519775 ATATAAATTAT
1 A-A-AAATTAT
48519786 GAAAATAGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 8 0.24
29 19 0.56
30 7 0.21
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.35
Consensus pattern (28 bp):
AAAAATTATTATAAATGAATAAAAATAT
Found at i:48519855 original size:16 final size:17
Alignment explanation
Indices: 48519836--48519870 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
48519826 AAATGTAAAG
*
48519836 AATAT-GAAAATTTTTA
1 AATATAGAAAATTATTA
48519852 AATATAGAAAATTATTA
1 AATATAGAAAATTATTA
48519869 AA
1 AA
48519871 GTTATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (17 bp):
AATATAGAAAATTATTA
Found at i:48520165 original size:21 final size:19
Alignment explanation
Indices: 48520136--48520175 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
48520126 TGAAAAAAAT
*
48520136 GTTTTTTTTCATATATTTTTA
1 GTTTGTTTT-ATA-ATTTTTA
48520157 GTTTGTTTTATAATTTTTA
1 GTTTGTTTTATAATTTTTA
48520176 TGCTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 3 0.17
21 8 0.44
ACGTcount: A:0.20, C:0.03, G:0.07, T:0.70
Consensus pattern (19 bp):
GTTTGTTTTATAATTTTTA
Found at i:48520327 original size:10 final size:9
Alignment explanation
Indices: 48520162--48520365 Score: 91
Period size: 9 Copynumber: 22.3 Consensus size: 9
48520152 TTTTAGTTTG
48520162 TTTTATAAT
1 TTTTATAAT
**
48520171 TTTTATGCT
1 TTTTATAAT
48520180 TTTTATAAT
1 TTTTATAAT
* *
48520189 ATTTTGTAAA
1 -TTTTATAAT
48520199 TTTTATTAAT
1 TTTTA-TAAT
*
48520209 ATTTA-ATAT
1 TTTTATA-AT
48520218 TTTT-T-AT
1 TTTTATAAT
* *
48520225 TTTAAATATTT
1 TTT-TATA-AT
48520236 TTTTATAAT
1 TTTTATAAT
*
48520245 TTTTA-CAT
1 TTTTATAAT
48520253 TTTT-T-AT
1 TTTTATAAT
*
48520260 TCTTCATAAT
1 T-TTTATAAT
** *
48520270 TCATATACT
1 TTTTATAAT
*
48520279 TTTTACAAT
1 TTTTATAAT
* *
48520288 TTATATGAT
1 TTTTATAAT
48520297 TTTTATAAT
1 TTTTATAAT
* *
48520306 TTTTGTAGT
1 TTTTATAAT
48520315 TTTCTATAA-
1 TTT-TATAAT
48520324 TTTTATAAT
1 TTTTATAAT
48520333 ATTTTAATAAT
1 -TTTT-ATAAT
*
48520344 TTTT-TGAAC
1 TTTTAT-AAT
48520353 TTTTATATAT
1 TTTTATA-AT
48520363 TTT
1 TTT
48520366 AATATTTCTT
Statistics
Matches: 141, Mismatches: 35, Indels: 37
0.66 0.16 0.17
Matches are distributed among these distances:
7 8 0.06
8 15 0.11
9 73 0.52
10 36 0.26
11 9 0.06
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:48520365 original size:38 final size:38
Alignment explanation
Indices: 48520287--48520366 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
48520277 CTTTTTACAA
* * * *
48520287 TTTATATGATTTTTATAATTTTTGTAGTTTTCTATAAT
1 TTTATATGATTTTAATAATTTTTGAACTTTTATATAAT
48520325 TTTATAAT-ATTTTAATAATTTTTTGAACTTTTATAT-AT
1 TTTAT-ATGATTTTAATAA-TTTTTGAACTTTTATATAAT
48520363 TTTA
1 TTTA
48520367 ATATTTCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
38 20 0.56
39 16 0.44
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (38 bp):
TTTATATGATTTTAATAATTTTTGAACTTTTATATAAT
Found at i:48521671 original size:44 final size:44
Alignment explanation
Indices: 48521608--48521695 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
48521598 AGGATATGAA
48521608 AATGTAATAATGAATTCTATCATTACAGATAGAAAATATTTATC
1 AATGTAATAATGAATTCTATCATTACAGATAGAAAATATTTATC
*
48521652 AATGTAGTAATGAATTCTATCATTACAGATAGAAAATATTTATC
1 AATGTAATAATGAATTCTATCATTACAGATAGAAAATATTTATC
48521696 TTATTTGGTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.44, C:0.09, G:0.10, T:0.36
Consensus pattern (44 bp):
AATGTAATAATGAATTCTATCATTACAGATAGAAAATATTTATC
Found at i:48523216 original size:13 final size:13
Alignment explanation
Indices: 48523198--48523226 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
48523188 GGTTGTTTAT
48523198 TAAACTAATTAAC
1 TAAACTAATTAAC
48523211 TAAACTAATTAAC
1 TAAACTAATTAAC
48523224 TAA
1 TAA
48523227 TTAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:48529785 original size:13 final size:13
Alignment explanation
Indices: 48529767--48529795 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
48529757 GGTTGTTTAT
48529767 TAAACTAATTAAC
1 TAAACTAATTAAC
48529780 TAAACTAATTAAC
1 TAAACTAATTAAC
48529793 TAA
1 TAA
48529796 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:48541788 original size:50 final size:49
Alignment explanation
Indices: 48541721--48541889 Score: 136
Period size: 49 Copynumber: 3.5 Consensus size: 49
48541711 AAGATGTGTC
*
48541721 AGTGTAAGACCAAGTCTGGGACATGGCATCGGCACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-ATGTGAGAGCT
* * * * * *
48541771 AGTGTAAGACCATGTCTGGGACCTAGCGTTGGC-CTCG-ATGATGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AGAATG-TGAGAGCT
* * * *
48541819 CAGTGTAAGACCATGTTTAGGACATGGCATC-G-ACATGAGATAT--GAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACA-GA-ATGTGAGAGCT
48541867 AGTGTAAGACCATGTCTGGGACA
1 AGTGTAAGACCATGTCTGGGACA
48541890 AGGTGTCGGC
Statistics
Matches: 92, Mismatches: 19, Indels: 19
0.71 0.15 0.15
Matches are distributed among these distances:
47 23 0.25
48 7 0.08
49 31 0.34
50 31 0.34
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAATGTGAGAGCT
Found at i:48543036 original size:22 final size:22
Alignment explanation
Indices: 48543011--48543082 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
48543001 TCGAATTGGT
48543011 CACACGGGCGTGTTGCCCCTTC
1 CACACGGGCGTGTTGCCCCTTC
*
48543033 CACACAGGCGTGTTGCCCC-TC
1 CACACGGGCGTGTTGCCCCTTC
48543054 CAACACGGGCGTGTTGCCCCTTC
1 C-ACACGGGCGTGTTGCCCCTTC
48543077 CACACG
1 CACACG
48543083 AGTGTGTGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.07
22 40 0.87
23 3 0.07
ACGTcount: A:0.14, C:0.42, G:0.25, T:0.19
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTTC
Found at i:48549389 original size:46 final size:46
Alignment explanation
Indices: 48549286--48549412 Score: 157
Period size: 46 Copynumber: 2.7 Consensus size: 46
48549276 GGGTTATCAT
* * *
48549286 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCAATATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAACATTGAGACGA
* * *
48549334 GAGCTAGTGTAAGACATGTCTGGGACATGCATCACCCTTGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGACG-A
*
48549381 -AGCCAGTGTAAGACATGTCTAGGACATGCATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC
48549413 GGCTACGAGA
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 44 0.61
47 14 0.19
48 14 0.19
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGACGA
Found at i:48549545 original size:99 final size:96
Alignment explanation
Indices: 48549426--48549607 Score: 249
Period size: 99 Copynumber: 1.9 Consensus size: 96
48549416 TACGAGATGT
* *
48549426 GTCAGTGTAAGACCAAGTCTGGGACATGGCATCGGCAT-AGATATGTCACAGCTAGTGTAAGACC
1 GTCAGTGTAAGACCAAGTCTGGGACATGGCATCGACATGAGATATG----AGCCAGTGTAAGACC
*
48549490 ATGTCTGGGACGTGGCGTTGGCCTCGATGACGAAA
62 ATGTCTGGGACATGGCGTTGGCCTCGATGACGAAA
* * *
48549525 GTCAGTGTAAGTCCATGTCTGGGACATGGCATCGACTTGAGATATGAGCCAGTGTAAGACCATGT
1 GTCAGTGTAAGACCAAGTCTGGGACATGGCATCGACATGAGATATGAGCCAGTGTAAGACCATGT
* *
48549590 TTGGGACATGGTGTTGGC
66 CTGGGACATGGCGTTGGC
48549608 ATTCAACCCC
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
96 33 0.45
99 34 0.46
100 7 0.09
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.25
Consensus pattern (96 bp):
GTCAGTGTAAGACCAAGTCTGGGACATGGCATCGACATGAGATATGAGCCAGTGTAAGACCATGT
CTGGGACATGGCGTTGGCCTCGATGACGAAA
Found at i:48550755 original size:22 final size:21
Alignment explanation
Indices: 48550730--48550791 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
48550720 TCGAATTGGT
*
48550730 CACATGGGCGTGTTGCCCCTTC
1 CACACGGGCGTG-TGCCCCTTC
**
48550752 CACACGGGAATGTGCCCCTTC
1 CACACGGGCGTGTGCCCCTTC
48550773 CACACGGGCGTGTGCCCCT
1 CACACGGGCGTGTGCCCCT
48550792 ATTTCTAGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
21 26 0.74
22 9 0.26
ACGTcount: A:0.13, C:0.39, G:0.27, T:0.21
Consensus pattern (21 bp):
CACACGGGCGTGTGCCCCTTC
Found at i:48551434 original size:27 final size:28
Alignment explanation
Indices: 48551403--48551457 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
48551393 GTGAGCATGA
48551403 ATATAA-GGTGATTTGGGCCTAACGGGC
1 ATATAATGGTGATTTGGGCCTAACGGGC
*
48551430 ATATAATGGTGATTTGGGCCTAATGGGC
1 ATATAATGGTGATTTGGGCCTAACGGGC
48551458 CACATAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.29
Consensus pattern (28 bp):
ATATAATGGTGATTTGGGCCTAACGGGC
Found at i:48561875 original size:40 final size:40
Alignment explanation
Indices: 48561703--48561868 Score: 246
Period size: 40 Copynumber: 4.2 Consensus size: 40
48561693 AACCCAAGTA
* * *
48561703 CCTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
48561742 CCTTCGAGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
48561782 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
48561822 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
48561862 CCTTCGG
1 CCTTCGG
48561869 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 11 0.10
40 103 0.90
41 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:48569524 original size:15 final size:15
Alignment explanation
Indices: 48569506--48569539 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
48569496 TATTATTTTC
48569506 ATGTTAATTATTAAT
1 ATGTTAATTATTAAT
* *
48569521 ATGTTAATTTTTATT
1 ATGTTAATTATTAAT
48569536 ATGT
1 ATGT
48569540 AGTGGGTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (15 bp):
ATGTTAATTATTAAT
Found at i:48572602 original size:25 final size:25
Alignment explanation
Indices: 48572574--48572622 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
48572564 ATATCCTAAA
* * * *
48572574 ACTGTTATAGGTAGTATGTACTGAG
1 ACTGCTATAGATAGGATATACTGAG
48572599 ACTGCTATAGATAGGATATACTGA
1 ACTGCTATAGATAGGATATACTGA
48572623 AAACACCCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (25 bp):
ACTGCTATAGATAGGATATACTGAG
Found at i:48574370 original size:40 final size:40
Alignment explanation
Indices: 48574322--48574415 Score: 129
Period size: 40 Copynumber: 2.4 Consensus size: 40
48574312 CTCGGTATTA
48574322 CACACTTAGTGCC-TCATATAGCCAAAGCTA-TTCCAACTCG
1 CACACTTAGTGCCAT-ATATAGCCAAAGCTATTTCCAAC-CG
* *
48574362 CACACTTAGTGCCATTTATAGCCAAAGCTATTTCGAACCG
1 CACACTTAGTGCCATATATAGCCAAAGCTATTTCCAACCG
*
48574402 CTCACTTAGTGCCA
1 CACACTTAGTGCCA
48574416 AACATAGTCA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 42 0.86
41 7 0.14
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.27
Consensus pattern (40 bp):
CACACTTAGTGCCATATATAGCCAAAGCTATTTCCAACCG
Found at i:48579835 original size:39 final size:40
Alignment explanation
Indices: 48579735--48579919 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
48579725 TCGAATGATG
* * * *
48579735 TCCGGGCTAAGTACAGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
48579774 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
48579815 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
48579854 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
48579893 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
48579920 AATGAGTAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:48579941 original size:79 final size:79
Alignment explanation
Indices: 48579788--48579942 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
48579778 GGACTAAGAT
* **
48579788 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTCACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
*
48579853 ATCTGGGTTAAGTC
66 ATCTCGGTTAAGTC
* * *
48579867 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAGT-AGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTCA-C
*
48579930 TATAT-TCGGTTAA
63 TAAATCTCGGTTAA
48579943 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.63
80 22 0.34
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
ATCTCGGTTAAGTC
Found at i:48589473 original size:13 final size:13
Alignment explanation
Indices: 48589455--48589482 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
48589445 ACATATTATA
48589455 AATATTTTGTGTT
1 AATATTTTGTGTT
48589468 AATATTTTGTGTT
1 AATATTTTGTGTT
48589481 AA
1 AA
48589483 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:48589504 original size:23 final size:23
Alignment explanation
Indices: 48589478--48589521 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
48589468 AATATTTTGT
48589478 GTTAAAAATAATAA-AATAAAAGG
1 GTTAAAAATAA-AATAATAAAAGG
**
48589501 GTTAGTAATAAAATAATAAAA
1 GTTAAAAATAAAATAATAAAA
48589522 ATTGGGGGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (23 bp):
GTTAAAAATAAAATAATAAAAGG
Found at i:48590954 original size:40 final size:40
Alignment explanation
Indices: 48590906--48591111 Score: 326
Period size: 40 Copynumber: 5.2 Consensus size: 40
48590896 GGACTAAGAT
48590906 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
48590946 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
48590986 CCAAAGGCATTTGTGCTAGTGACTATATCCTGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
48591026 CCAAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
48591066 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGG-TAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
48591105 CCGAAGG
1 CCGAAGG
48591112 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.08
40 141 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:48597613 original size:13 final size:13
Alignment explanation
Indices: 48597595--48597622 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
48597585 ACATATTATA
48597595 AATATTTTGTGTT
1 AATATTTTGTGTT
48597608 AATATTTTGTGTT
1 AATATTTTGTGTT
48597621 AA
1 AA
48597623 AATAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:48599084 original size:40 final size:40
Alignment explanation
Indices: 48599036--48599241 Score: 333
Period size: 40 Copynumber: 5.2 Consensus size: 40
48599026 GGACTAAGAT
48599036 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
48599076 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
48599116 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
48599156 CCAAAGGCATTTGTGCTAGTGATTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
48599196 CCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
48599235 CCGAAGG
1 CCGAAGG
48599242 TACTTGGGTT
Statistics
Matches: 154, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 14 0.09
40 140 0.91
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:48602841 original size:3 final size:3
Alignment explanation
Indices: 48602835--48602862 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
48602825 TATGTAATGA
48602835 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
48602863 AGAACAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:48612905 original size:40 final size:41
Alignment explanation
Indices: 48612844--48613115 Score: 358
Period size: 40 Copynumber: 6.8 Consensus size: 41
48612834 CATTTGAATG
* * * *
48612844 ATATCCGGGCTAAGTCTCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
48612884 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
48612924 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
48612964 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
48613004 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
48613044 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
48613084 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
48613116 TTGTGGTTAT
Statistics
Matches: 205, Mismatches: 22, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
39 2 0.01
40 197 0.96
41 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:48613061 original size:120 final size:120
Alignment explanation
Indices: 48612861--48613135 Score: 489
Period size: 120 Copynumber: 2.3 Consensus size: 120
48612851 GGCTAAGTCT
* *
48612861 CGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 CGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
48612926 ATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
66 ATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
48612981 CGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 CGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
*
48613046 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
66 ATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
* * *
48613101 CGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
48613136 ATTCCGAAGA
Statistics
Matches: 149, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
119 6 0.04
120 143 0.96
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
CGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
ATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
Found at i:48615810 original size:19 final size:21
Alignment explanation
Indices: 48615769--48615808 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
48615759 GAAAAACCTG
48615769 TTAGAAGAAAAAAATGAAAAA
1 TTAGAAGAAAAAAATGAAAAA
*
48615790 TTAGAA-AATAAAATGAAAA
1 TTAGAAGAAAAAAATGAAAA
48615809 TTTAAATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.17
Consensus pattern (21 bp):
TTAGAAGAAAAAAATGAAAAA
Found at i:48637676 original size:53 final size:54
Alignment explanation
Indices: 48637564--48637715 Score: 164
Period size: 53 Copynumber: 2.8 Consensus size: 54
48637554 TTACGTGATA
* * *
48637564 TCCTTTTGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 TCCTTATGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
* * * * * *
48637618 GCCTTATG-AACTCACCAATGCCATGCCTTGGCATAGTCTTACATGGGA-CATTT
1 TCCTTATGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATC-CTT
* * *
48637671 TCCTTACAGTAACTTATCAATGCCATGTCTTGACATGGTCTTACA
1 TCCTTA-TGAAACTTACCAATGCCATGTCTTGACATGGTCTTACA
48637716 CGATTTCCTT
Statistics
Matches: 79, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
52 1 0.01
53 41 0.52
54 7 0.09
55 30 0.38
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
TCCTTATGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
Found at i:48637731 original size:55 final size:52
Alignment explanation
Indices: 48637526--48637731 Score: 134
Period size: 49 Copynumber: 3.9 Consensus size: 52
48637516 ACGCGGGTAC
* * ** ** * *
48637526 CTTACCATTGCCATGACTTTTCATGGTCTTACGTGATATCCTT--TTGA-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACACGATTTCCTTCCTTAAGAA
* * * * *
48637575 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACACGATTTCCTT-CCTTAAGAA
* * * * * *
48637628 CTCACCAATGCCATGCCTTGGCATAGTCTTACATGGGACATT--TTCCTTACAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACA--CGA-TTTCCTTCCTTA-AG-AA
*
48637683 CTTATCAATGCCATGTCTTGACATGGTCTTACACGATTTCCTTACCTTA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACACGATTTCCTT-CCTTA
48637732 GAAACCTGAC
Statistics
Matches: 121, Mismatches: 24, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
49 38 0.31
52 4 0.03
53 37 0.31
54 5 0.04
55 36 0.30
56 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (52 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACACGATTTCCTTCCTTAAGAA
Found at i:48640429 original size:30 final size:30
Alignment explanation
Indices: 48640395--48640455 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
48640385 TCCTTAACTC
48640395 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
48640425 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
48640455 A
1 A
48640456 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:48648125 original size:16 final size:16
Alignment explanation
Indices: 48648101--48648131 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
48648091 CTTCTTCACT
48648101 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
48648117 TACTTACTTACTTAA
1 TACTCACTTACTTAA
48648132 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:48648137 original size:20 final size:20
Alignment explanation
Indices: 48648098--48648137 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
48648088 AAGCTTCTTC
* *
48648098 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
48648118 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
48648138 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:48648248 original size:23 final size:24
Alignment explanation
Indices: 48648210--48648254 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
48648200 TTTGCTCTTC
*
48648210 TAGTATGAACTTGTCTTACCTTTT
1 TAGTATGAACTCGTCTTACCTTTT
48648234 TAGTAT-AACTCGTCTTACCTT
1 TAGTATGAACTCGTCTTACCTT
48648255 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (24 bp):
TAGTATGAACTCGTCTTACCTTTT
Found at i:48648505 original size:55 final size:54
Alignment explanation
Indices: 48648326--48648578 Score: 197
Period size: 55 Copynumber: 4.8 Consensus size: 54
48648316 TGGGTACCTT
* * * *
48648326 ACCATTGCCATGACTTGTCATGGTCTTACA-TGGTATCC-T---TT-TGAAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATTGGTATCCTTACCTTATG-AACTC
* * * *
48648375 ACCATTTCCATGTCTTGACATGGTCTTACA-TGGTATCCTTGCCTTGTGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATTGGTATCCTTACCTTATGAACTC
* * *
48648428 ACCAATGCCATGCCTTGGCATGGTCTTACATTGG-A-CCTTTACCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATTGGTATCC-TTACCTTAT-G-AACTC
* * * * *
48648483 ATCAATGCCATGTCTTGACATGGTCTTACA-TGATTTCCTTGCCTTA-GAAAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATTGGTATCCTTACCTTATG--AACTC
* *
48648537 ACCAATTGCCATGCCTTGGCATGGTCTTACA-TGGTATCCTTA
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATTGGTATCCTTA
48648579 AACCCTAATG
Statistics
Matches: 167, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 35 0.21
50 1 0.01
52 2 0.01
53 41 0.25
54 17 0.10
55 69 0.41
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATTGGTATCCTTACCTTATGAACTC
Found at i:48651380 original size:43 final size:43
Alignment explanation
Indices: 48651278--48651388 Score: 122
Period size: 43 Copynumber: 2.6 Consensus size: 43
48651268 GATTACATGC
*
48651278 AAGACCAT-TCTGGGACATTGGCATTGTATTGTGATTATGTGT
1 AAGACCATGTCTGGGACATTGGCATCGTATTGTGATTATGTGT
**
48651320 AAGACCATGTCCAGGACATTGGCATCGTTATT-TGATT-TCGTGT
1 AAGACCATGTCTGGGACATTGGCATCG-TATTGTGATTAT-GTGT
* *
48651363 AACG-CCCTGTCTGGGACAGTGGCATC
1 AA-GACCATGTCTGGGACATTGGCATC
48651389 AACTATGATA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
42 9 0.16
43 44 0.76
44 5 0.09
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGGCATCGTATTGTGATTATGTGT
Found at i:48654410 original size:68 final size:67
Alignment explanation
Indices: 48654338--48654487 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
48654328 CATCATGTGT
* * * *
48654338 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
48654400 ATGTAG
62 ATGTAG
** * *
48654406 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
48654471 AG
66 AG
48654473 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
48654488 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:48654443 original size:64 final size:64
Alignment explanation
Indices: 48654362--48654545 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
48654352 AGACATTATG
* *
48654362 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
48654426 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
48654491 AA
63 AA
* * * *
48654493 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
48654546 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:48656610 original size:43 final size:43
Alignment explanation
Indices: 48656557--48656645 Score: 142
Period size: 43 Copynumber: 2.1 Consensus size: 43
48656547 GACACAGACA
*
48656557 TGTTTGGTGACCGTGTGAGGCACACGGCCTGTTCTCATGGGCG
1 TGTTTGGTGACCGTGTGAGGCACACGGCCTGTTCTCACGGGCG
* * *
48656600 TGTTTGGTGACTGTGTGAGGCATATGGCCTGTTCTCACGGGCG
1 TGTTTGGTGACCGTGTGAGGCACACGGCCTGTTCTCACGGGCG
48656643 TGT
1 TGT
48656646 GACCCTTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.11, C:0.20, G:0.37, T:0.31
Consensus pattern (43 bp):
TGTTTGGTGACCGTGTGAGGCACACGGCCTGTTCTCACGGGCG
Found at i:48657893 original size:101 final size:101
Alignment explanation
Indices: 48657718--48657921 Score: 408
Period size: 101 Copynumber: 2.0 Consensus size: 101
48657708 GATGTCAGAA
48657718 ATAGACAATGGAATAATGTTTGAATTGAAATGATAGCTGAGATTAGTAGTTATAGTCGGGCAGTT
1 ATAGACAATGGAATAATGTTTGAATTGAAATGATAGCTGAGATTAGTAGTTATAGTCGGGCAGTT
48657783 GCTATGGTTTCTTTTGGGCATTCTATGTGTACATTC
66 GCTATGGTTTCTTTTGGGCATTCTATGTGTACATTC
48657819 ATAGACAATGGAATAATGTTTGAATTGAAATGATAGCTGAGATTAGTAGTTATAGTCGGGCAGTT
1 ATAGACAATGGAATAATGTTTGAATTGAAATGATAGCTGAGATTAGTAGTTATAGTCGGGCAGTT
48657884 GCTATGGTTTCTTTTGGGCATTCTATGTGTACATTC
66 GCTATGGTTTCTTTTGGGCATTCTATGTGTACATTC
48657920 AT
1 AT
48657922 TCTTAGAACT
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 103 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.38
Consensus pattern (101 bp):
ATAGACAATGGAATAATGTTTGAATTGAAATGATAGCTGAGATTAGTAGTTATAGTCGGGCAGTT
GCTATGGTTTCTTTTGGGCATTCTATGTGTACATTC
Found at i:48663127 original size:34 final size:34
Alignment explanation
Indices: 48663089--48663156 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
48663079 CAAATCTCAA
48663089 AACCTTTTTCAATGGAGACACTTTCAAGAATACT
1 AACCTTTTTCAATGGAGACACTTTCAAGAATACT
*
48663123 AACCTTTTTCCATGGAGACACTTTCAAGAATACT
1 AACCTTTTTCAATGGAGACACTTTCAAGAATACT
48663157 TTATCTCCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (34 bp):
AACCTTTTTCAATGGAGACACTTTCAAGAATACT
Found at i:48674844 original size:27 final size:27
Alignment explanation
Indices: 48674814--48674991 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48674804 ATATTGAGTC
* * * *
48674814 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48674841 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48674868 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48674896 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48674923 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48674950 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48674977 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48674992 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48674953 original size:82 final size:81
Alignment explanation
Indices: 48674835--48674990 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48674825 TGCTATATAA
* *
48674835 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48674900 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
48674917 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48674981 CACTTAGTGC
65 CACTTAGTGC
48674991 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48682958 original size:27 final size:27
Alignment explanation
Indices: 48682928--48683105 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48682918 ATATTGAGTC
* * * *
48682928 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48682955 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48682982 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48683010 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48683037 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48683064 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48683091 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48683106 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48683067 original size:82 final size:81
Alignment explanation
Indices: 48682949--48683104 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48682939 TGCTATATAA
* *
48682949 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48683014 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
48683031 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48683095 CACTTAGTGC
65 CACTTAGTGC
48683105 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48693733 original size:54 final size:54
Alignment explanation
Indices: 48693646--48693766 Score: 172
Period size: 54 Copynumber: 2.2 Consensus size: 54
48693636 CTAACAGTAT
*** *
48693646 AGGCTAAATCCCCTTTAGTATAAACTCATAGAGTAATGTCAGGATTACC-AGTCC
1 AGGCTAAATCCCCCGCAGTATAAACTCAAAGAGTAATGTCAGGATT-CCTAGTCC
**
48693700 AGGCTAAATCCCCCGCAGTATAAACTCAAAGAGTAATGTGGGGATTCCTAGTCC
1 AGGCTAAATCCCCCGCAGTATAAACTCAAAGAGTAATGTCAGGATTCCTAGTCC
48693754 AGGCTAAATCCCC
1 AGGCTAAATCCCC
48693767 TCCAACGACA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 2 0.03
54 58 0.97
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (54 bp):
AGGCTAAATCCCCCGCAGTATAAACTCAAAGAGTAATGTCAGGATTCCTAGTCC
Found at i:48696059 original size:12 final size:12
Alignment explanation
Indices: 48696042--48696071 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
48696032 TGAGAATTTT
48696042 CTCTAATTAACA
1 CTCTAATTAACA
48696054 CTCTAATTAACA
1 CTCTAATTAACA
48696066 C-CTAAT
1 CTCTAAT
48696072 CCCCTTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (12 bp):
CTCTAATTAACA
Found at i:48698551 original size:40 final size:39
Alignment explanation
Indices: 48698467--48698650 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
48698457 TCGAATGATG
* * * *
48698467 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
48698507 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
48698547 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
48698585 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
48698626 -CAGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
48698651 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 25 0.20
39 18 0.15
40 70 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48698606 original size:78 final size:80
Alignment explanation
Indices: 48698467--48698648 Score: 219
Period size: 78 Copynumber: 2.3 Consensus size: 80
48698457 TCGAATGATG
* *
48698467 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
48698532 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * * **
48698546 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
48698608 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* * *
48698625 ACAGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
48698649 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 48 0.55
79 28 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:48708034 original size:24 final size:24
Alignment explanation
Indices: 48708002--48708057 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
48707992 TTATTAGGTT
48708002 TCACCCTAATCTGGCAAAATCTTG
1 TCACCCTAATCTGGCAAAATCTTG
48708026 TCACCCTAATCTGGCAAAATCTTG
1 TCACCCTAATCTGGCAAAATCTTG
48708050 TCACCCTA
1 TCACCCTA
48708058 TTTCTAGGCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (24 bp):
TCACCCTAATCTGGCAAAATCTTG
Found at i:48710542 original size:43 final size:44
Alignment explanation
Indices: 48710495--48710665 Score: 165
Period size: 43 Copynumber: 4.0 Consensus size: 44
48710485 GTTACTGAGA
* *
48710495 TGTGACTACCTGTAAGACCATGTCTGGGACATTGGCAT-TGTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTAT
*
48710538 TGTGATTACGTGTAGGACCATGTCTGGGACATTGGCATCAT-TAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATC-TGTAT
* * * * *
48710582 T-TGATTTCGTGTAAGACCCTTTCTGGGACAGTGGCATCGGTA-
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTAT
* * * * * *
48710624 TGTGATAACATATAAGACCATATTTGGGATA-TGGCAT-TGTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTAT
48710666 GAGCTATATG
Statistics
Matches: 105, Mismatches: 18, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
41 3 0.03
42 7 0.07
43 90 0.86
44 4 0.04
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (44 bp):
TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTAT
Found at i:48716313 original size:43 final size:43
Alignment explanation
Indices: 48716266--48716359 Score: 104
Period size: 42 Copynumber: 2.2 Consensus size: 43
48716256 TCTCAGACGT
* *
48716266 GGTCTTACAT-GTAATCAAATATCGATGCC-ACTATCCCAGAAAG
1 GGTCTTACATCGAAATAAAATAT-GATGCCGA-TATCCCAGAAAG
* * *
48716309 GGTCTTAC-TCGAAATAAAATATGATGCCGATGTCCCAGACAT
1 GGTCTTACATCGAAATAAAATATGATGCCGATATCCCAGAAAG
48716351 GGTCTTACA
1 GGTCTTACA
48716360 CATAAATCTC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 24 0.56
43 19 0.44
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (43 bp):
GGTCTTACATCGAAATAAAATATGATGCCGATATCCCAGAAAG
Found at i:48716355 original size:42 final size:43
Alignment explanation
Indices: 48716247--48716359 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 43
48716237 AGCTAGTACA
* * * * *
48716247 ATGCCAATATCTCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCACTATCCCAGACATGGTCTTACATGAAATAAAATATCG
* *
48716290 ATGCCACTATCCCAGAAAGGGTCTTAC-TCGAAATAAAATAT-G
1 ATGCCACTATCCCAGACATGGTCTTACAT-GAAATAAAATATCG
*
48716332 ATGCCGA-TGTCCCAGACATGGTCTTACA
1 ATGCC-ACTATCCCAGACATGGTCTTACA
48716360 CATAAATCTC
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 24 0.42
43 33 0.58
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCACTATCCCAGACATGGTCTTACATGAAATAAAATATCG
Found at i:48718516 original size:129 final size:129
Alignment explanation
Indices: 48718286--48718544 Score: 412
Period size: 129 Copynumber: 2.0 Consensus size: 129
48718276 GTGCGTAATT
* *
48718286 ACAATCCTATGGCATGCCAAATATATCCAATGGTCTCAAGCGTCACAGGGCCAAAATATATGTTA
1 ACAATCCTATGGCATGCCAAATATATCCAATGATCTCAAGCGTCACAAGGCCAAAATATATGTTA
* *
48718351 TTAAACACACATATGTTGCTTACCAATTCTTTGCTCATTACCACTACATATTTTCATCATAAGC
66 TTAAACACACATATGTTGCTTACCAATTCTTTGCTCATTACCACTACATATATGCATCATAAGC
* * *
48718415 ACAATCCTATGGCATGCCAACTATATCCAATGATCTCAAGTGTTACAAGGCCAAAATATATGTTA
1 ACAATCCTATGGCATGCCAAATATATCCAATGATCTCAAGCGTCACAAGGCCAAAATATATGTTA
** *
48718480 TTAAACACACATATGTTGCTTACTGATT-TTCTGCTCATTACCACTGCATATATGCATCATAAGC
66 TTAAACACACATATGTTGCTTACCAATTCTT-TGCTCATTACCACTACATATATGCATCATAAGC
48718544 A
1 A
48718545 TAATATTATC
Statistics
Matches: 119, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
128 2 0.02
129 117 0.98
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (129 bp):
ACAATCCTATGGCATGCCAAATATATCCAATGATCTCAAGCGTCACAAGGCCAAAATATATGTTA
TTAAACACACATATGTTGCTTACCAATTCTTTGCTCATTACCACTACATATATGCATCATAAGC
Found at i:48724458 original size:29 final size:29
Alignment explanation
Indices: 48724419--48724497 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
48724409 CTTAATAATC
*
48724419 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
48724449 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
48724478 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
48724498 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:48732796 original size:29 final size:29
Alignment explanation
Indices: 48732757--48732835 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
48732747 CTTAATAATC
*
48732757 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
48732787 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
48732816 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
48732836 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:48735834 original size:40 final size:40
Alignment explanation
Indices: 48735772--48735985 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
48735762 AAACCAAGTA
* * *
48735772 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
48735811 CCTTCGGGACTTAGCCCGGATATA-TAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48735850 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48735889 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
48735929 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
48735969 CCTTC-GGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
48735986 TTATCATCCG
Statistics
Matches: 161, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
38 19 0.12
39 58 0.36
40 84 0.52
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48735901 original size:78 final size:77
Alignment explanation
Indices: 48735772--48735985 Score: 285
Period size: 78 Copynumber: 2.7 Consensus size: 77
48735762 AAACCAAGTA
* * *
48735772 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAT
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-AT-T
48735836 AGT-TCGCACAAATG
63 AGTATCGCACAAATG
48735850 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
48735914 TAACTCGCACAAATG
65 T-A-TCGCACAAATG
*
48735929 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTC-GGACTTAGCCCG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCG
48735986 TTATCATCCG
Statistics
Matches: 124, Mismatches: 5, Indels: 13
0.87 0.04 0.09
Matches are distributed among these distances:
76 4 0.03
77 9 0.07
78 47 0.38
79 29 0.23
80 35 0.28
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (77 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
ATCGCACAAATG
Found at i:48743846 original size:40 final size:40
Alignment explanation
Indices: 48743784--48743999 Score: 253
Period size: 40 Copynumber: 5.4 Consensus size: 40
48743774 AAACCAAGTA
* * * *
48743784 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
48743823 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48743863 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
48743903 CCTTCGGGACTTAGCCC-AAAATTAGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATG
* * *
48743943 CCTTCGGTACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
48743983 CCTTCGAGACTTAGCCC
1 CCTTCGGGACTTAGCCC
48744000 AGTTATCATC
Statistics
Matches: 155, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 16 0.10
40 137 0.88
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48748432 original size:23 final size:23
Alignment explanation
Indices: 48748392--48748444 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
48748382 TGACTCACCA
*
48748392 CAGCTCATAAAAGATTACTGTTT
1 CAGCTCATAAAAGATTACTGATT
** *
48748415 CAGCTCATTGAAGCTTACTGATT
1 CAGCTCATAAAAGATTACTGATT
*
48748438 CATCTCA
1 CAGCTCA
48748445 AAAGGGTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (23 bp):
CAGCTCATAAAAGATTACTGATT
Found at i:48748477 original size:22 final size:22
Alignment explanation
Indices: 48748426--48748502 Score: 73
Period size: 24 Copynumber: 3.4 Consensus size: 22
48748416 AGCTCATTGA
* *
48748426 AGCTTACTGATTCATCTCAAAAG
1 AGCTTACT-ATTCAACTCAATAG
* *
48748449 GGTTTACTATTCAACTCAATAG
1 AGCTTACTATTCAACTCAATAG
* *
48748471 AGCTTACCATTTTCAGCTCAATAG
1 AGCTTA-C-TATTCAACTCAATAG
48748495 AGCTTACT
1 AGCTTACT
48748503 GTTTATTAGC
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
22 17 0.39
23 8 0.18
24 19 0.43
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (22 bp):
AGCTTACTATTCAACTCAATAG
Found at i:48754728 original size:15 final size:17
Alignment explanation
Indices: 48754698--48754729 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
48754688 ACTTGTATTC
48754698 ATATTGTCATTGAATTG
1 ATATTGTCATTGAATTG
48754715 ATATTGT-A-TGAATTG
1 ATATTGTCATTGAATTG
48754730 TTAAGTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (17 bp):
ATATTGTCATTGAATTG
Found at i:48780025 original size:18 final size:18
Alignment explanation
Indices: 48780004--48780045 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
48779994 AGTCATTTAG
*
48780004 AAAATAGTTAGTCATATT
1 AAAACAGTTAGTCATATT
* *
48780022 AAAACATTTAGTTATATT
1 AAAACAGTTAGTCATATT
48780040 AAAACA
1 AAAACA
48780046 TTATTAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (18 bp):
AAAACAGTTAGTCATATT
Found at i:48780046 original size:18 final size:18
Alignment explanation
Indices: 48780011--48780047 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
48780001 TAGAAAATAG
48780011 TTAGTCATATTAAAACAT
1 TTAGTCATATTAAAACAT
*
48780029 TTAGTTATATTAAAACAT
1 TTAGTCATATTAAAACAT
48780047 T
1 T
48780048 ATTAATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.43
Consensus pattern (18 bp):
TTAGTCATATTAAAACAT
Found at i:48788193 original size:21 final size:21
Alignment explanation
Indices: 48788142--48788191 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
48788132 CTTGAGTATT
*
48788142 TAAATGTTTAATGATAGATTA
1 TAAAGGTTTAATGATAGATTA
48788163 TAAAGGTTTAATGATAGA-TA
1 TAAAGGTTTAATGATAGATTA
*
48788183 TAAAAGTTT
1 TAAAGGTTT
48788192 TACAAAGTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (21 bp):
TAAAGGTTTAATGATAGATTA
Found at i:48788813 original size:23 final size:23
Alignment explanation
Indices: 48788783--48788909 Score: 96
Period size: 23 Copynumber: 5.4 Consensus size: 23
48788773 ACAGCTCGTA
* *
48788783 AGAGCTTACTGTTTCATCTCATT
1 AGAGCTTACTGTTTCAGCTCAAT
* * *
48788806 AGAGCTTACCGATTCAGGTCGAA-
1 AGAGCTTACTGTTTCAGCTC-AAT
*
48788829 AGAGCTTACAG-TTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
* **
48788851 AGAGCTTACATTTTTCATATCAAT
1 AGAGCTTAC-TGTTTCAGCTCAAT
* *
48788875 AGAGCTTATTGTTTATCAGCTCAAG
1 AGAGCTTACTG-TT-TCAGCTCAAT
48788900 AGGAGCTTAC
1 A-GAGCTTAC
48788910 CGACCATGAC
Statistics
Matches: 80, Mismatches: 17, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
21 2 0.03
22 16 0.20
23 27 0.34
24 20 0.25
25 8 0.10
26 7 0.09
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:48791650 original size:35 final size:35
Alignment explanation
Indices: 48791583--48791744 Score: 153
Period size: 35 Copynumber: 4.6 Consensus size: 35
48791573 TCAATCCCTT
* *
48791583 CAAATCACACCAGATGCTCACAAGAGAAAGTCCAAC
1 CAAAACACACCA-ATGCTCATAAGAGAAAGTCCAAC
* *
48791619 CAAAACACGCCAATACTCATAAGAGAAAGTCCAAC
1 CAAAACACACCAATGCTCATAAGAGAAAGTCCAAC
**** * **
48791654 TGGTACATACCAATGCTCATAAGAGATTGTCCAAC
1 CAAAACACACCAATGCTCATAAGAGAAAGTCCAAC
* **
48791689 CAAAACACACCAATGCTCATATGAGCTAGTCCAAC
1 CAAAACACACCAATGCTCATAAGAGAAAGTCCAAC
** **
48791724 TGAAACACGTCAATGCTCATA
1 CAAAACACACCAATGCTCATA
48791745 CGAGCTAGTC
Statistics
Matches: 101, Mismatches: 25, Indels: 1
0.80 0.20 0.01
Matches are distributed among these distances:
35 91 0.90
36 10 0.10
ACGTcount: A:0.41, C:0.28, G:0.14, T:0.17
Consensus pattern (35 bp):
CAAAACACACCAATGCTCATAAGAGAAAGTCCAAC
Found at i:48791679 original size:70 final size:71
Alignment explanation
Indices: 48791591--48791725 Score: 191
Period size: 70 Copynumber: 1.9 Consensus size: 71
48791581 TTCAAATCAC
*
48791591 ACCAGATGCTCACAAGAGAAAGTCCAACCAAAACACGCCAATACTCATAAGAGAAAGTCCAACTG
1 ACCAGATGCTCACAAGAGAAAGTCCAACCAAAACACACCAATACTCATAAGAGAAAGTCCAACTG
48791656 GTACAT
66 GTACAT
* ** * * **
48791662 ACCA-ATGCTCATAAGAGATTGTCCAACCAAAACACACCAATGCTCATATGAGCTAGTCCAACTG
1 ACCAGATGCTCACAAGAGAAAGTCCAACCAAAACACACCAATACTCATAAGAGAAAGTCCAACTG
48791726 AAACACGTCA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
70 52 0.93
71 4 0.07
ACGTcount: A:0.41, C:0.27, G:0.15, T:0.17
Consensus pattern (71 bp):
ACCAGATGCTCACAAGAGAAAGTCCAACCAAAACACACCAATACTCATAAGAGAAAGTCCAACTG
GTACAT
Found at i:48791738 original size:70 final size:70
Alignment explanation
Indices: 48791588--48791744 Score: 188
Period size: 70 Copynumber: 2.2 Consensus size: 70
48791578 CCCTTCAAAT
* *
48791588 CACACCAGATGCTCACAAGAGAAAGTCCAACCAAAACACGCCAATACTCATAAGAGAAAGTCCAA
1 CACACCA-ATGCTCATAAGAGAAAGTCCAACCAAAACACACCAATACTCATAAGAGAAAGTCCAA
**
48791653 CTGGTA
65 CTGAAA
* ** * * **
48791659 CATACCAATGCTCATAAGAGATTGTCCAACCAAAACACACCAATGCTCATATGAGCTAGTCCAAC
1 CACACCAATGCTCATAAGAGAAAGTCCAACCAAAACACACCAATACTCATAAGAGAAAGTCCAAC
48791724 TGAAA
66 TGAAA
**
48791729 CACGTCAATGCTCATA
1 CACACCAATGCTCATA
48791745 CGAGCTAGTC
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
70 66 0.92
71 6 0.08
ACGTcount: A:0.41, C:0.28, G:0.14, T:0.17
Consensus pattern (70 bp):
CACACCAATGCTCATAAGAGAAAGTCCAACCAAAACACACCAATACTCATAAGAGAAAGTCCAAC
TGAAA
Found at i:48791766 original size:35 final size:35
Alignment explanation
Indices: 48791664--48791754 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 35
48791654 TGGTACATAC
* * * ** **
48791664 CAATGCTCATAAGAGATTGTCCAACCAAAACACAC
1 CAATGCTCATACGAGCTAGTCCAACTGAAACACGT
*
48791699 CAATGCTCATATGAGCTAGTCCAACTGAAACACGT
1 CAATGCTCATACGAGCTAGTCCAACTGAAACACGT
48791734 CAATGCTCATACGAGCTAGTC
1 CAATGCTCATACGAGCTAGTC
48791755 TCTTCGAAAC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.21
Consensus pattern (35 bp):
CAATGCTCATACGAGCTAGTCCAACTGAAACACGT
Found at i:48794710 original size:46 final size:46
Alignment explanation
Indices: 48794528--48794700 Score: 283
Period size: 46 Copynumber: 3.8 Consensus size: 46
48794518 TATATATACA
* * *
48794528 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
* **
48794574 CATCTCATACACGTTTCGCATTAGCCATTCAACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
48794620 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
48794666 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
48794701 CGCCACATAT
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 118 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:48794755 original size:47 final size:47
Alignment explanation
Indices: 48794724--48794870 Score: 258
Period size: 47 Copynumber: 3.1 Consensus size: 47
48794714 CACTTCCACG
**
48794724 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
48794771 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
48794818 TTCATCACACTAGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
48794865 TTCATC
1 TTCATC
48794871 TCATAAAATC
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 96 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:48803752 original size:40 final size:40
Alignment explanation
Indices: 48803669--48803931 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
48803659 TTGAATGCTG
* * * * * *
48803669 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
48803709 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
48803749 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
48803789 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
48803829 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
48803869 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
48803908 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
48803932 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:48803951 original size:79 final size:80
Alignment explanation
Indices: 48803708--48803966 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
48803698 AAGTGAATAT
* * * * * * *
48803708 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
48803772 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
48803788 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
48803853 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
48803868 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
48803932 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
48803947 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
48803967 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:48806335 original size:30 final size:31
Alignment explanation
Indices: 48806260--48806341 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 31
48806250 CAGTCTCGAT
*
48806260 ATAT-ACTGGGCCGAAGCCTTTTCATAAATC
1 ATATCACTAGGCCGAAGCCTTTTCATAAATC
*
48806290 ATATCACTAGGCCGAAGCCTTTTCATACATC
1 ATATCACTAGGCCGAAGCCTTTTCATAAATC
48806321 ATATCACT-GGCCGAAGCCTTT
1 ATATCACTAGGCCGAAGCCTTT
48806342 ACTGTAAGCG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 17 0.35
31 32 0.65
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
ATATCACTAGGCCGAAGCCTTTTCATAAATC
Found at i:48806575 original size:24 final size:24
Alignment explanation
Indices: 48806548--48806631 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
48806538 GTGGAGGCCT
48806548 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
48806572 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
* * *
48806597 AGCCCTTTTCGATAAACTAGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
48806622 AGCCCTTTTA
1 AGCCCTTTTA
48806632 GCACTTCCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.02
24 14 0.26
25 38 0.72
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:48806595 original size:25 final size:25
Alignment explanation
Indices: 48806561--48806630 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
48806551 CTCTTTTAAT
*
48806561 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
48806586 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
48806611 AACTAGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
48806631 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:48806757 original size:16 final size:16
Alignment explanation
Indices: 48806736--48806766 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
48806726 TTCATATCAC
48806736 CAACCACACAGTCCAT
1 CAACCACACAGTCCAT
48806752 CAACCACACAGTCCA
1 CAACCACACAGTCCA
48806767 AGTCAGTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.45, G:0.06, T:0.10
Consensus pattern (16 bp):
CAACCACACAGTCCAT
Found at i:48807486 original size:27 final size:27
Alignment explanation
Indices: 48807430--48807495 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
48807420 GGGCATATTC
*
48807430 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCTTACAGGGGTATTACG
* *
48807457 GTCAGTTTACCTTACAGGGGCT-TTATG
1 GTCATTTTACCTTACAGGGG-TATTACG
*
48807484 GTCTTTTTACCT
1 GTCATTTTACCT
48807496 ATTAGGGTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCTTACAGGGGTATTACG
Found at i:48807577 original size:27 final size:27
Alignment explanation
Indices: 48807499--48807766 Score: 163
Period size: 27 Copynumber: 9.9 Consensus size: 27
48807489 TTTACCTATT
* *
48807499 AGGGTATTTTAGTCA-TTT-CATACTACA
1 AGGGTATTTTAGTAATTTTACAAAC--CA
* * * *
48807526 AGGGTGTTTTGGTAAATCTACAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCA
**
48807553 AGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCA
* * *
48807580 ATGGTATTTTTA-TAATTCTTAGAAAGTCA
1 AGGGTA-TTTTAGTAATT-TTACAAA-CCA
* ** *
48807609 AGGGTATTTTTGTAATTTTGTAAATCA
1 AGGGTATTTTAGTAATTTTACAAACCA
* * ***
48807636 GGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTAGTAATTTTACAAACCA
*
48807663 AGGGTATTTTAGTAATTTCACAAACC-
1 AGGGTATTTTAGTAATTTTACAAACCA
* *
48807689 AGTGGTATTTTGGTAATTTTACAAACTA
1 AG-GGTATTTTAGTAATTTTACAAACCA
* * *
48807717 GGGGTATTTTGGTAATTCTAC---CCTA
1 AGGGTATTTTAGTAATTTTACAAACC-A
*
48807742 TAGGCGTATTTTAGTAATTTCACAA
1 -AGG-GTATTTTAGTAATTTTACAA
48807767 TCGAGGGTAA
Statistics
Matches: 188, Mismatches: 40, Indels: 24
0.75 0.16 0.10
Matches are distributed among these distances:
24 1 0.01
25 1 0.01
26 4 0.02
27 144 0.77
28 22 0.12
29 16 0.09
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAACCA
Found at i:48807696 original size:54 final size:54
Alignment explanation
Indices: 48807499--48807733 Score: 211
Period size: 54 Copynumber: 4.3 Consensus size: 54
48807489 TTTACCTATT
* * * * * *
48807499 AGGGTATTTTAGTCATTTCATACTACAAG-GGTGTTTTGGTAAATCTACAAACCA
1 AGGGTATTTTAGTAATTTCATA-AACCAGTGGTATTTTGGTAATTTTACAAACCA
** * ** * *
48807553 AGGGTATTTTAGTAATTTTGTAAACCAATGGTATTTTTATAATTCTTAGAAAGTCA
1 AGGGTATTTTAGTAATTTCATAAACCAGTGGTATTTTGGTAATT-TTACAAA-CCA
* ** * * ***
48807609 AGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTAGTAATTTCATAAACCAGTGGTATTTTGGTAATTTTACAAACCA
* *
48807663 AGGGTATTTTAGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTCATAAACCAGTGGTATTTTGGTAATTTTACAAACCA
* *
48807717 GGGGTATTTTGGTAATT
1 AGGGTATTTTAGTAATT
48807734 CTACCCTATA
Statistics
Matches: 146, Mismatches: 32, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
53 3 0.02
54 92 0.63
55 11 0.08
56 40 0.27
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTCATAAACCAGTGGTATTTTGGTAATTTTACAAACCA
Found at i:48807728 original size:81 final size:81
Alignment explanation
Indices: 48807611--48807766 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
48807601 GAAAGTCAAG
* ** *
48807611 GGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAA-ATTGAGG-GTATTTTA
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACAATA-T-AGGCGTATTTTA
48807674 GTAATTTCACAAACCAGT
64 GTAATTTCACAAACCAGT
**
48807692 GGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTCTACCCTATAGGCGTATTTTAG
1 GGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTCTACAATATAGGCGTATTTTAG
48807756 TAATTTCACAA
65 TAATTTCACAA
48807767 TCGAGGGTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
80 4 0.06
81 61 0.92
82 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTCTACAATATAGGCGTATTTTAGT
AATTTCACAAACCAGT
Found at i:48807840 original size:27 final size:27
Alignment explanation
Indices: 48807765--48807829 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
48807755 GTAATTTCAC
*
48807765 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTATA
*
48807792 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTATA
48807819 AATCGAGGGTA
1 AATCGAGGGTA
48807830 CTTTGGTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.45, C:0.09, G:0.20, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTATA
Found at i:48814747 original size:46 final size:46
Alignment explanation
Indices: 48814680--48814770 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
48814670 AGGGGGAGTA
48814680 AGCATAAAGCTTAGTAAGTTGCACATAAATAAATATTCAACATAAT
1 AGCATAAAGCTTAGTAAGTTGCACATAAATAAATATTCAACATAAT
48814726 AGCATAAAGCTTAGTAAGTTGCACATAAATAAATATTCAACATAA
1 AGCATAAAGCTTAGTAAGTTGCACATAAATAAATATTCAACATAA
48814771 CTTTACCATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.27
Consensus pattern (46 bp):
AGCATAAAGCTTAGTAAGTTGCACATAAATAAATATTCAACATAAT
Found at i:48815187 original size:94 final size:91
Alignment explanation
Indices: 48815017--48815319 Score: 335
Period size: 94 Copynumber: 3.3 Consensus size: 91
48815007 GTGACGATGC
* * *
48815017 CATGTCCCAGACATGATCTTACACTGACACATCTC-GTAGCCGATG-CATGTCCCAAACAT-GTC
1 CATGTCCCAGACATG-TCTTACACTGACTCGTCTCAAT-GCCGATGCCATGTCCCAAACATGGTC
*
48815079 TTACACTGGTTTACGTCTTGAGGCTGAAG
64 TTACACTGGCTTACGT-TTGAGGCTGAAG
* *
48815108 CATGTCCCAGAAATGTCTTACACTGGTACTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACT-G-ACTCGTCTCAATGCCGATGCCATGTCCCAAACATGGTC
**
48815173 TTACACTGGCTTACGTTTCGAGGCCAAAG
64 TTACACTGGCTTACGTTT-GAGGCTGAAG
* * *
48815202 TATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGAAGCCATGTCCTAAACATGGTC
1 CATGTCCCAGACATGTCTTACACT-G-ACTCGTCTCAATGCCGATGCCATGTCCCAAACATGGTC
* * * * *
48815267 ATACACTGGCTCT-CATAATGTGGCTGATG
64 TTACACTGGCT-TACGT-TTGAGGCTGAAG
*
48815296 CATGTCCCAGACATGCCTTACACT
1 CATGTCCCAGACATGTCTTACACT
48815320 AGCTCACACA
Statistics
Matches: 180, Mismatches: 24, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
90 9 0.05
91 15 0.08
92 14 0.08
93 16 0.09
94 124 0.69
95 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTGACTCGTCTCAATGCCGATGCCATGTCCCAAACATGGTCTT
ACACTGGCTTACGTTTGAGGCTGAAG
Found at i:48815207 original size:47 final size:45
Alignment explanation
Indices: 48815017--48815225 Score: 183
Period size: 46 Copynumber: 4.5 Consensus size: 45
48815007 GTGACGATGC
** * * *
48815017 CATGTCCCAGACATGATCTTACACT-GACACATCTCGTA-GCCGATG
1 CATGTCCCAGACATG-TCTTACACTGGTTACGTTTCG-AGGCCGAAG
* *
48815062 CATGTCCCAAACATGTCTTACACTGGTTTACGTCTT-GAGGCTGAAG
1 CATGTCCCAGACATGTCTTACACTGG-TTACGT-TTCGAGGCCGAAG
* * * * *
48815108 CATGTCCCAGAAATGTCTTACACTGG-TACTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGTTA--CGTTTCGAGGCCGAAG
*
48815154 CCATGTCCCAGACATGGTCTTACACTGGCTTACGTTTCGAGGCCAAAG
1 -CATGTCCCAGACAT-GTCTTACACTGG-TTACGTTTCGAGGCCGAAG
*
48815202 TATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
48815226 AGCACTCGTC
Statistics
Matches: 132, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.08
45 17 0.13
46 52 0.39
47 27 0.20
48 23 0.17
50 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGTTACGTTTCGAGGCCGAAG
Found at i:48822314 original size:11 final size:11
Alignment explanation
Indices: 48822298--48822329 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
48822288 ACTCGTGAGG
48822298 TATTGTTTCCC
1 TATTGTTTCCC
48822309 TATTGTTTCCC
1 TATTGTTTCCC
*
48822320 TTTTGTTTCC
1 TATTGTTTCC
48822330 TCATTCTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.06, C:0.25, G:0.09, T:0.59
Consensus pattern (11 bp):
TATTGTTTCCC
Found at i:48824912 original size:79 final size:81
Alignment explanation
Indices: 48824744--48824928 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
48824734 GCTACTCGTT
* *
48824744 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
48824808 GATTTAGTAACTCGCGC
65 GATATAGTAACTAGCGA
* * **
48824825 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
48824887 GATATGGTCACTTAGC-A
65 GATATAGTAAC-TAGCGA
48824904 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
48824929 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCGA
Found at i:48824928 original size:40 final size:40
Alignment explanation
Indices: 48824725--48824928 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
48824715 CGGAATTTAA
** *
48824725 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48824765 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
48824805 CCGGATTTAGTAACTCGCGCCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48824844 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48824884 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48824924 CCGGA
1 CCGGA
48824929 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.23
40 92 0.67
41 12 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48833029 original size:39 final size:40
Alignment explanation
Indices: 48832912--48833096 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
48832902 GCTACTCATT
* *
48832912 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
48832952 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
48832992 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
48833031 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
48833072 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48833097 CATCATTCGA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Done.