Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 152 of 253
Found at i:48847742 original size:29 final size:29
Alignment explanation
Indices: 48847708--48847781 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
48847698 TCATCAACCA
*
48847708 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
48847737 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
48847766 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
48847782 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:48868990 original size:20 final size:21
Alignment explanation
Indices: 48868952--48868992 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
48868942 ACTCCCTCAA
48868952 CCCTTAAAACTTTTTATTTTC
1 CCCTTAAAACTTTTTATTTTC
48868973 CCCTT-AAA-TTTTTAATTTTC
1 CCCTTAAAACTTTTT-ATTTTC
48868993 ACTCTTTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 9 0.47
21 5 0.26
ACGTcount: A:0.24, C:0.22, G:0.00, T:0.54
Consensus pattern (21 bp):
CCCTTAAAACTTTTTATTTTC
Found at i:48869973 original size:30 final size:30
Alignment explanation
Indices: 48869938--48870015 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
48869928 TCACCAAGGG
*
48869938 ACACACGGCCGTATAC-CATGACCGTGTGTC
1 ACACACGGCCG-AGACACATGACCGTGTGTC
* * *
48869968 ACACACGACTGAGACACATGCCCGTGTGTC
1 ACACACGGCCGAGACACATGACCGTGTGTC
*
48869998 ACACACGGCTGAGACACA
1 ACACACGGCCGAGACACA
48870016 CGCCCATGTC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 3 0.07
30 39 0.93
ACGTcount: A:0.28, C:0.33, G:0.23, T:0.15
Consensus pattern (30 bp):
ACACACGGCCGAGACACATGACCGTGTGTC
Found at i:48892413 original size:46 final size:46
Alignment explanation
Indices: 48892363--48892535 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
48892353 TGGTTGAGCA
48892363 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
** * * *
48892409 TCCGAACTCGTTGAGTTGAGTCCGAGTT-TGTGAAATGTAACTAG-GCAT-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATG
* * *
48892457 T-TGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48892502 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48892536 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 60 0.59
47 28 0.27
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48902434 original size:31 final size:31
Alignment explanation
Indices: 48902397--48902462 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
48902387 TACATCATTA
48902397 CAAAGTCCCTTATATTAGGTCAACGAGACCT
1 CAAAGTCCCTTATATTAGGTCAACGAGACCT
48902428 CAAAGTCCCTTATATTAGGTCAACGAGACCT
1 CAAAGTCCCTTATATTAGGTCAACGAGACCT
48902459 CAAA
1 CAAA
48902463 CATGCTTTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (31 bp):
CAAAGTCCCTTATATTAGGTCAACGAGACCT
Found at i:48904923 original size:26 final size:26
Alignment explanation
Indices: 48904893--48904944 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
48904883 CACCACTGAA
*
48904893 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
48904919 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
48904945 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:48905025 original size:26 final size:26
Alignment explanation
Indices: 48904995--48905045 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
48904985 ACCAATGAAC
*
48904995 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
48905021 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
48905046 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:48905038 original size:101 final size:102
Alignment explanation
Indices: 48904862--48905123 Score: 438
Period size: 101 Copynumber: 2.6 Consensus size: 102
48904852 AACCGTTATT
* *
48904862 GGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGAA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGAA
48904927 TCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 TCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
48904964 -GTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGAA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGAA
48905028 TCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 TCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
48905065 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 -GGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
48905124 TTATATACAA
Statistics
Matches: 150, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
101 98 0.65
103 51 0.34
104 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (102 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGAA
TCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:48905485 original size:29 final size:29
Alignment explanation
Indices: 48905452--48905515 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
48905442 TAATCCACCA
48905452 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
48905481 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
48905511 CCCAA
1 CCCAA
48905516 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:48905489 original size:30 final size:30
Alignment explanation
Indices: 48905459--48905515 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
48905449 CCACCCAACT
48905459 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
48905488 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
48905516 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:48912393 original size:26 final size:26
Alignment explanation
Indices: 48912363--48912414 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
48912353 CACCACTGAA
*
48912363 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
48912389 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
48912415 CTTTCATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:48912494 original size:26 final size:26
Alignment explanation
Indices: 48912464--48912514 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
48912454 ACCAATGAAC
*
48912464 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
48912490 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
48912515 CTTTTCACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:48912506 original size:100 final size:103
Alignment explanation
Indices: 48912331--48912593 Score: 426
Period size: 100 Copynumber: 2.6 Consensus size: 103
48912321 TAACCGTTAT
* *
48912331 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
48912396 ATCAGCACATAGCAACCCCC-TTT-CATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATA
*
48912432 T-GTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
48912496 ATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTT-ACATTTCAAAGATA
* **
48912535 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
48912594 TTATATACAA
Statistics
Matches: 150, Mismatches: 7, Indels: 7
0.91 0.04 0.04
Matches are distributed among these distances:
100 80 0.53
101 4 0.03
103 14 0.09
104 51 0.34
105 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
ATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATA
Found at i:48912956 original size:30 final size:30
Alignment explanation
Indices: 48912926--48912982 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
48912916 ACCACCAACT
48912926 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
48912955 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
48912983 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:48919312 original size:47 final size:44
Alignment explanation
Indices: 48919237--48919362 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 44
48919227 TCTCTTGTGT
48919237 GAGCTAGTGTAAGACATGTCTGGGACATGCATAGGCCACATT-ATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATAGG---CATTGA-GAC
*
48919283 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATAGGCATTGAGAC
*
48919329 GAGCGATAGTGTAAGACATGTCTGAGACATGCAT
1 GAGC--TAGTGTAAGACATGTCTGGGACATGCAT
48919363 CAGCTTCAAG
Statistics
Matches: 72, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
45 6 0.08
46 23 0.32
47 27 0.38
48 16 0.22
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATAGGCATTGAGAC
Found at i:48920312 original size:37 final size:37
Alignment explanation
Indices: 48920248--48920356 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
48920238 AGCTCAGACG
* * * *
48920248 AAATCTCCACATGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
48920285 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
48920322 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
48920357 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:48920625 original size:47 final size:47
Alignment explanation
Indices: 48920563--48921094 Score: 735
Period size: 47 Copynumber: 11.1 Consensus size: 47
48920553 ACACGTTTCG
* * * **
48920563 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
48920610 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48920657 CATTGGCCA-TCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48920703 CATT-GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
48920749 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
48920802 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
48920849 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
48920900 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
48920947 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
48920994 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
48921045 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48921092 CAT
1 CAT
48921095 AAAATCCTAA
Statistics
Matches: 437, Mismatches: 32, Indels: 32
0.87 0.06 0.06
Matches are distributed among these distances:
45 4 0.01
46 79 0.18
47 222 0.51
49 1 0.00
51 89 0.20
53 42 0.10
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:48920704 original size:23 final size:23
Alignment explanation
Indices: 48920678--48920751 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
48920668 GGCCTTATCA
48920678 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
* * *
48920701 CACAT-TGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
48920722 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
48920747 CACAT
1 CACAT
48920752 TGGCCATTCG
Statistics
Matches: 37, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
21 5 0.14
22 4 0.11
23 19 0.51
24 4 0.11
25 5 0.14
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.30
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:48920946 original size:98 final size:95
Alignment explanation
Indices: 48920563--48921094 Score: 702
Period size: 98 Copynumber: 5.5 Consensus size: 95
48920553 ACACGTTTCG
*
48920563 CATTAGCCATTCGGCCTTA-C-CACATATAT-TCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATC--GTTCACATTCATCACATTGGCCATTCGGC
* * *
48920625 CTTATCTCATATATGCATGTTCACATTCATCA
64 CTTATCACACATACGCATGTTCACATTCATCA
***
48920657 CATTGGCCA-TCGGCCTTATCACACATACGCAT-GTTCACATTCATCACATT-GCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCT
48920719 TATCACACATACGCATGTTCACATTCATCA
66 TATCACACATACGCATGTTCACATTCATCA
*
48920749 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCA--CACATATATAT-C--GTTCACATTCATCACATTGGCCATTC
48920814 GGCCTTATCACACATACGCATGTTCACATTCATCA
61 GGCCTTATCACACATACGCATGTTCACATTCATCA
48920849 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-C--GTTCACATTCATCACATTGGCCATTCGG
*
48920914 CCTTATCACACATACGCATGTTCACATCCATCA
63 CCTTATCACACATACGCATGTTCACATTCATCA
* ***
48920947 CAGTGGCCATTCGGCCTTATCACACATACGCAT-GTTCACATTCATCACATTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCT
***
48921011 TATCACACATATATATACGGGTTCACATTCATCA
66 TATCACACATACGCAT----GTTCACATTCATCA
*** *
48921045 CATTGGCCATTCGGCCTTATCACACATACGCAT-GTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACAT
48921095 AAAATCCTAA
Statistics
Matches: 399, Mismatches: 24, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
92 48 0.12
93 39 0.10
94 53 0.13
95 13 0.03
96 1 0.00
98 163 0.41
99 18 0.05
100 64 0.16
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (95 bp):
CATTGGCCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCT
TATCACACATACGCATGTTCACATTCATCA
Found at i:48920954 original size:145 final size:144
Alignment explanation
Indices: 48920563--48921094 Score: 792
Period size: 145 Copynumber: 3.7 Consensus size: 144
48920553 ACACGTTTCG
* **
48920563 CATTAGCCATTCGGCCTTA-C-CACATATAT-TCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGC
* * * *
48920625 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCA-TCGGCCTTATCACACATACGCAT
66 CTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
48920689 GTTCACATTCATCA
131 GTTCACATTCATCA
***
48920703 CATT-GCCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGC
* ** * *
48920764 CTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
66 CTTATCA--C----ACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACAT
48920829 ACGCATGTTCACATTCATCA
125 ACGCATGTTCACATTCATCA
48920849 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGGCCATTCGG
*
48920914 CCTTATCACACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCA
65 CCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCA
48920979 TGTTCACATTCATCA
130 TGTTCACATTCATCA
48920994 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGGCCATTCGG
48921059 CCTTATCACACATACGCATGTTCACATCCATCACAT
65 CCTTATCACACATACGCATGTTCACATCCATCACAT
48921095 AAAATCCTAA
Statistics
Matches: 361, Mismatches: 16, Indels: 25
0.90 0.04 0.06
Matches are distributed among these distances:
139 49 0.14
140 5 0.01
141 7 0.02
142 1 0.00
145 196 0.54
146 41 0.11
147 25 0.07
149 1 0.00
151 36 0.10
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (144 bp):
CATTGGCCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
GTTCACATTCATCA
Found at i:48923403 original size:85 final size:85
Alignment explanation
Indices: 48923274--48923452 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
48923264 TATTTTATTG
*
48923274 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
48923339 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
48923359 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
48923424 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
48923444 CCCATGCTC
1 CCCATGCTC
48923453 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:48924973 original size:57 final size:58
Alignment explanation
Indices: 48924900--48925008 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
48924890 GCCCACTGAT
* * *
48924900 CGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACATAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
* * *
48924957 CGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTC
48925009 TAATCATTCG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 24 0.53
58 21 0.47
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:48924996 original size:29 final size:28
Alignment explanation
Indices: 48924907--48925005 Score: 83
Period size: 29 Copynumber: 3.5 Consensus size: 28
48924897 GATCGATCTC
* * * *
48924907 GCACACATAGTGCTTGGTTGAAGAACTC
1 GCACACATAGTGCTCGGTTAAAGAATTT
** **
48924935 GCACACATAGTGCCTCAATTACCG-ATTT
1 GCACACATAGTG-CTCGGTTAAAGAATTT
48924963 CGCACACATAGTGCTCGGTTAAAAGAATTT
1 -GCACACATAGTGCTCGGTT-AAAGAATTT
*
48924993 GCACACACAGTGC
1 GCACACATAGTGC
48925006 CTCTAATCAT
Statistics
Matches: 54, Mismatches: 13, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
28 19 0.35
29 31 0.57
30 4 0.07
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (28 bp):
GCACACATAGTGCTCGGTTAAAGAATTT
Found at i:48925264 original size:40 final size:40
Alignment explanation
Indices: 48925220--48925609 Score: 622
Period size: 40 Copynumber: 9.8 Consensus size: 40
48925210 CCAGCATGAT
* * * * *
48925220 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
48925260 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
48925300 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
48925340 TGCTCCTCGGGACTTAGCCC--ATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
48925378 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
48925418 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
48925458 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
48925498 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
48925538 TGCTCCTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
48925578 TGCTCTTCGAGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
48925610 CTCAATTCTC
Statistics
Matches: 327, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
38 37 0.11
40 290 0.89
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:48926969 original size:36 final size:37
Alignment explanation
Indices: 48926864--48927007 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
48926854 GCTCAGACGA
* * * *
48926864 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
48926901 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
48926938 AATCTCCACACGTAGTCATC-GGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
48926974 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
48927008 ATATATTTCC
Statistics
Matches: 102, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
36 36 0.35
37 66 0.65
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:48926984 original size:73 final size:74
Alignment explanation
Indices: 48926864--48927007 Score: 245
Period size: 73 Copynumber: 2.0 Consensus size: 74
48926854 GCTCAGACGA
* *
48926864 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
48926929 CCCGGACAT
66 CCCGGACAT
* *
48926938 AATCTCCACACGTAGTCATC-GGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
48927002 CCCGGA
66 CCCGGA
48927008 ATATATTTCC
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
73 49 0.74
74 17 0.26
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (74 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
CCCGGACAT
Found at i:48927277 original size:47 final size:47
Alignment explanation
Indices: 48927215--48927747 Score: 744
Period size: 47 Copynumber: 11.1 Consensus size: 47
48927205 TACACGTTTC
* * * **
48927215 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
48927262 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48927309 CATTGGCCA-TCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48927355 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
48927402 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
48927455 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
48927502 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
48927553 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
48927600 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
48927647 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
48927698 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
48927745 CAT
1 CAT
48927748 AAAATCCTAA
Statistics
Matches: 439, Mismatches: 32, Indels: 30
0.88 0.06 0.06
Matches are distributed among these distances:
46 43 0.10
47 264 0.60
49 1 0.00
51 89 0.20
53 42 0.10
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:48927356 original size:23 final size:23
Alignment explanation
Indices: 48927330--48927404 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
48927320 GGCCTTATCA
48927330 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
48927353 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
48927375 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
48927400 CACAT
1 CACAT
48927405 TGGCCATTCG
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 16 0.43
24 11 0.30
25 5 0.14
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:48927599 original size:98 final size:95
Alignment explanation
Indices: 48927215--48927747 Score: 711
Period size: 98 Copynumber: 5.5 Consensus size: 95
48927205 TACACGTTTC
*
48927215 CATTAGCCATTCGGCCTTA-C-CACATATAT-TCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATC--GTTCACATTCATCACATTGGCCATTCGGC
* * *
48927277 CTTATCTCATATATGCATGTTCACATTCATCA
64 CTTATCACACATACGCATGTTCACATTCATCA
***
48927309 CATTGGCCA-TCGGCCTTATCACACATACGCAT-GTTCACATTCATCACATTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCT
48927372 TATCACACATACGCATGTTCACATTCATCA
66 TATCACACATACGCATGTTCACATTCATCA
*
48927402 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCA--CACATATATAT-C--GTTCACATTCATCACATTGGCCATTC
48927467 GGCCTTATCACACATACGCATGTTCACATTCATCA
61 GGCCTTATCACACATACGCATGTTCACATTCATCA
48927502 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-C--GTTCACATTCATCACATTGGCCATTCGG
*
48927567 CCTTATCACACATACGCATGTTCACATCCATCA
63 CCTTATCACACATACGCATGTTCACATTCATCA
* ***
48927600 CAGTGGCCATTCGGCCTTATCACACATACGCAT-GTTCACATTCATCACATTGGCCATTCGGCCT
1 CATTGGCCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCT
***
48927664 TATCACACATATATATACGGGTTCACATTCATCA
66 TATCACACATACGCAT----GTTCACATTCATCA
*** *
48927698 CATTGGCCATTCGGCCTTATCACACATACGCAT-GTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACAT
48927748 AAAATCCTAA
Statistics
Matches: 401, Mismatches: 24, Indels: 24
0.89 0.05 0.05
Matches are distributed among these distances:
93 76 0.19
94 65 0.16
95 6 0.01
96 8 0.02
98 163 0.41
100 83 0.21
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (95 bp):
CATTGGCCATTCGGCCTTATCACACATATATATCGTTCACATTCATCACATTGGCCATTCGGCCT
TATCACACATACGCATGTTCACATTCATCA
Found at i:48927652 original size:145 final size:144
Alignment explanation
Indices: 48927215--48927747 Score: 801
Period size: 145 Copynumber: 3.7 Consensus size: 144
48927205 TACACGTTTC
* **
48927215 CATTAGCCATTCGGCCTTA-C-CACATATAT-TCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGC
* * * *
48927277 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCA-TCGGCCTTATCACACATACGCAT
66 CTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
48927341 GTTCACATTCATCA
131 GTTCACATTCATCA
***
48927355 CATTGGCCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGC
* ** * *
48927417 CTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
66 CTTATCA--C----ACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACAT
48927482 ACGCATGTTCACATTCATCA
125 ACGCATGTTCACATTCATCA
48927502 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGGCCATTCGG
*
48927567 CCTTATCACACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCA
65 CCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCA
48927632 TGTTCACATTCATCA
130 TGTTCACATTCATCA
48927647 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-CGGGTTCACATTCATCACATTGGCCATTCGG
48927712 CCTTATCACACATACGCATGTTCACATCCATCACAT
65 CCTTATCACACATACGCATGTTCACATCCATCACAT
48927748 AAAATCCTAA
Statistics
Matches: 362, Mismatches: 17, Indels: 23
0.90 0.04 0.06
Matches are distributed among these distances:
140 53 0.15
141 1 0.00
142 7 0.02
143 1 0.00
145 165 0.46
146 31 0.09
147 67 0.19
149 1 0.00
151 36 0.10
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (144 bp):
CATTGGCCATTCGGCCTTATCACACATATATATCGGGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
GTTCACATTCATCA
Found at i:48930058 original size:85 final size:85
Alignment explanation
Indices: 48929929--48930107 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
48929919 TATTTTATTG
*
48929929 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
48929994 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
48930014 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
48930079 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
48930099 CCCATGCTC
1 CCCATGCTC
48930108 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:48943132 original size:41 final size:40
Alignment explanation
Indices: 48942969--48943149 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
48942959 AATCAAGCAT
** ** * *
48942969 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
48943007 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
48943047 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
48943087 CTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
48943128 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
48943150 CATTCGAGTA
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 10 0.08
39 18 0.15
40 61 0.51
41 27 0.23
42 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:48943139 original size:81 final size:79
Alignment explanation
Indices: 48942969--48943149 Score: 211
Period size: 81 Copynumber: 2.3 Consensus size: 79
48942959 AATCAAGCAT
** * * *
48942969 CTTCGGGGTTTAG-CCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAACCCGGATATGGTC
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAACCCGGATATAGTC
* *
48943033 ACTAGCATAAATGC
66 ACTAGCACAAAAGC
** * ** *
48943047 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATGTAGT
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCAC-AAGGCCTTCGGATCTTAACCCGGATATAGT
*
48943112 CGCTTAGCACAAAAGC
65 CAC-TAGCACAAAAGC
48943128 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
48943150 CATTCGAGTA
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
78 11 0.13
79 17 0.20
80 26 0.30
81 32 0.37
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAACCCGGATATAGTC
ACTAGCACAAAAGC
Found at i:48944378 original size:38 final size:37
Alignment explanation
Indices: 48944336--48944410 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
48944326 CAAGAACTCC
48944336 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAA-TTTCGGCCAAAAGAAATGAA
48944374 TTCCTCCTTCCTTAGAATTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTCGGCCAAAAGAAATGAA
48944411 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 20 0.54
38 17 0.46
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (37 bp):
TTCCTCCTTCCTTAGAATTTCGGCCAAAAGAAATGAA
Found at i:48946408 original size:37 final size:37
Alignment explanation
Indices: 48946350--48946458 Score: 157
Period size: 37 Copynumber: 2.9 Consensus size: 37
48946340 CTATGCAGCA
* *
48946350 GATGCACAGGGCGAAGGCGATGGAGGAGATGGGTTGC
1 GATGCACGGGGAGAAGGCGATGGAGGAGATGGGTTGC
* *
48946387 GATGCACGGGGAGAAGACGATGGAGG-GAATGAGTTGC
1 GATGCACGGGGAGAAGGCGATGGAGGAG-ATGGGTTGC
*
48946424 GATGCACGGGGAGAAGGCGACGGAGGAGATGGGTT
1 GATGCACGGGGAGAAGGCGATGGAGGAGATGGGTT
48946459 TTTCTGATCA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
36 1 0.02
37 61 0.97
38 1 0.02
ACGTcount: A:0.27, C:0.12, G:0.49, T:0.13
Consensus pattern (37 bp):
GATGCACGGGGAGAAGGCGATGGAGGAGATGGGTTGC
Found at i:48947407 original size:7 final size:7
Alignment explanation
Indices: 48947395--48947468 Score: 58
Period size: 7 Copynumber: 10.3 Consensus size: 7
48947385 ACTAATTAAT
48947395 CTAAACC
1 CTAAACC
*
48947402 CTAAACTT
1 CTAAAC-C
*
48947410 CTTAACC
1 CTAAACC
*
48947417 CTAATCC
1 CTAAACC
*
48947424 CATAAACA
1 C-TAAACC
48947432 CTAAACC
1 CTAAACC
48947439 CTAAACC
1 CTAAACC
*
48947446 CTTAACC
1 CTAAACC
* *
48947453 TTTAACC
1 CTAAACC
*
48947460 CCAAACC
1 CTAAACC
48947467 CT
1 CT
48947469 TACACTTTAA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
7 41 0.80
8 10 0.20
ACGTcount: A:0.38, C:0.39, G:0.00, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:48947420 original size:22 final size:21
Alignment explanation
Indices: 48947395--48947468 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 21
48947385 ACTAATTAAT
48947395 CTAAACCCTAAACTTCTTAACC
1 CTAAACCCTAAAC-TCTTAACC
* * *
48947417 CTAATCCCATAAACACTAAACC
1 CTAAACCC-TAAACTCTTAACC
*
48947439 CTAAACCCTTAAC-CTTTAACC
1 CTAAACCCTAAACTC-TTAACC
*
48947460 CCAAACCCT
1 CTAAACCCT
48947469 TACACTTTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
20 1 0.02
21 17 0.40
22 20 0.47
23 5 0.12
ACGTcount: A:0.38, C:0.39, G:0.00, T:0.23
Consensus pattern (21 bp):
CTAAACCCTAAACTCTTAACC
Found at i:48947465 original size:21 final size:21
Alignment explanation
Indices: 48947435--48947478 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
48947425 ATAAACACTA
*
48947435 AACCCTAAACCCTTA-ACCTTT
1 AACCCCAAACCCTTACA-CTTT
48947456 AACCCCAAACCCTTACACTTT
1 AACCCCAAACCCTTACACTTT
48947477 AA
1 AA
48947479 ACTTCAACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.25
Consensus pattern (21 bp):
AACCCCAAACCCTTACACTTT
Found at i:48947572 original size:7 final size:7
Alignment explanation
Indices: 48947560--48947611 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
48947550 AGTTAACTCC
*
48947560 TAAACCT
1 TAAACCA
*
48947567 TAAACCC
1 TAAACCA
48947574 TAAACCA
1 TAAACCA
* * *
48947581 TATATCT
1 TAAACCA
48947588 TAAACCA
1 TAAACCA
48947595 TAAACCA
1 TAAACCA
*
48947602 TAAACTA
1 TAAACCA
48947609 TAA
1 TAA
48947612 TGATAATTAA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (7 bp):
TAAACCA
Found at i:48947831 original size:41 final size:41
Alignment explanation
Indices: 48947769--48947865 Score: 149
Period size: 41 Copynumber: 2.4 Consensus size: 41
48947759 GTTATATGAC
* *
48947769 TTTTAGCAGCGTTTTATCAAAAGCGCCGTTAATGCTCTGGT
1 TTTTAGCAGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
** *
48947810 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCAGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
48947851 TTTTAGCAGCGTTTT
1 TTTTAGCAGCGTTTT
48947866 TGGTAAAACG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.39
Consensus pattern (41 bp):
TTTTAGCAGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:48947878 original size:41 final size:40
Alignment explanation
Indices: 48947769--48947895 Score: 139
Period size: 41 Copynumber: 3.1 Consensus size: 40
48947759 GTTATATGAC
*
48947769 TTTTAGCAGCGTTTTATCAAAAGCGCCGTTAATGCTCTGGT
1 TTTTAGCAGCGTTTT-TCAAAAGCGCCGCTAATGCTCTGGT
** * *
48947810 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCAGCGTTTT-TCAAAAGCGCCGCTAATGCTCTGGT
* *
48947851 TTTTAGCAGCGTTTTTGGTAAAA-CGCCGCTATTGCTCTGTGT
1 TTTTAGCAGCGTTTTT--CAAAAGCGCCGCTAATGCTCTG-GT
48947893 TTT
1 TTT
48947896 GAAATTTTTA
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
41 63 0.88
42 9 0.12
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (40 bp):
TTTTAGCAGCGTTTTTCAAAAGCGCCGCTAATGCTCTGGT
Found at i:48948054 original size:6 final size:6
Alignment explanation
Indices: 48948043--48948074 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
48948033 ATTGTAATGA
48948043 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TT
48948075 CATTTATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTAAT
Found at i:48948962 original size:4 final size:4
Alignment explanation
Indices: 48948953--48949013 Score: 122
Period size: 4 Copynumber: 15.2 Consensus size: 4
48948943 CTATGCCCCT
48948953 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
48949001 TGTA TGTA TGTA T
1 TGTA TGTA TGTA T
48949014 ACCAGACTCC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 57 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:48951550 original size:15 final size:15
Alignment explanation
Indices: 48951510--48951558 Score: 71
Period size: 15 Copynumber: 3.2 Consensus size: 15
48951500 AGTACTTAAA
*
48951510 AAAAAATTTAGATTT
1 AAAAAATTTAAATTT
*
48951525 ATAATAATTTAAATTT
1 A-AAAAATTTAAATTT
48951541 AAAAAATTTAAATTT
1 AAAAAATTTAAATTT
48951556 AAA
1 AAA
48951559 CTCCATATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
15 17 0.57
16 13 0.43
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (15 bp):
AAAAAATTTAAATTT
Found at i:48958196 original size:63 final size:63
Alignment explanation
Indices: 48958116--48958291 Score: 212
Period size: 63 Copynumber: 2.8 Consensus size: 63
48958106 CGCACTCCCA
* * *
48958116 TGTCTCTAGCCTGTGTGACTTTAATTCCAAAACAATGAGTTACACGGCCTGGACACATGGCC-G
1 TGTCTCTAACCCGTGTGACTTTAATTCCAAAACAATGAGTTACACGGCCTGGAAACAT-GCCTG
* ** *
48958179 TGTCTTTGGCCCGTGTGA-TTCTAATTCCAAAACAATGAGTTACATGGCCTGGAAACATGCCTG
1 TGTCTCTAACCCGTGTGACTT-TAATTCCAAAACAATGAGTTACACGGCCTGGAAACATGCCTG
* * ** *
48958242 TGTCTCTAACTCGTGTGACTGTAATTCCAAAACAGCGGGTTACACGGCCT
1 TGTCTCTAACCCGTGTGACTTTAATTCCAAAACAATGAGTTACACGGCCT
48958292 ACCACACGGC
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
62 5 0.05
63 90 0.94
64 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.28
Consensus pattern (63 bp):
TGTCTCTAACCCGTGTGACTTTAATTCCAAAACAATGAGTTACACGGCCTGGAAACATGCCTG
Found at i:48960963 original size:30 final size:30
Alignment explanation
Indices: 48960927--48961007 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
48960917 TACGTGTATG
* *
48960927 GAAAGCTTGCCCAATTGGATGCGCTTTTCA
1 GAAAGCTCGCCCAATTGGATGCGCTTTCCA
* * *
48960957 GAAAGCTCGTCC-ATCTAGATACGCTTTCCA
1 GAAAGCTCGCCCAAT-TGGATGCGCTTTCCA
* *
48960987 AAAAGCTCGCCCAGTTGGATG
1 GAAAGCTCGCCCAATTGGATG
48961008 AGTTTTCCTT
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
29 2 0.05
30 36 0.92
31 1 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (30 bp):
GAAAGCTCGCCCAATTGGATGCGCTTTCCA
Found at i:48961218 original size:12 final size:14
Alignment explanation
Indices: 48961201--48961232 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
48961191 TTTTTTATAG
48961201 AAAATTG-TTTT-T
1 AAAATTGATTTTGT
48961213 AAAATTGATTTTGT
1 AAAATTGATTTTGT
48961227 AAAATT
1 AAAATT
48961233 AATAATGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 4 0.22
14 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (14 bp):
AAAATTGATTTTGT
Found at i:48969510 original size:24 final size:24
Alignment explanation
Indices: 48969483--48969564 Score: 71
Period size: 24 Copynumber: 3.4 Consensus size: 24
48969473 AGCTGGTAAC
48969483 AAAGAGGAAAAAGAAAAGAAGAGA
1 AAAGAGGAAAAAGAAAAGAAGAGA
* *
48969507 AAAG-GG-ATAAGAACGAAGAAGAGG
1 AAAGAGGAAAAAGAA--AAGAAGAGA
* *
48969531 AAA-AGGAAAAAAAGAAAGAAAATGA
1 AAAGAGGAAAAAGA-AAAGAAGA-GA
48969556 AAAGAGGAA
1 AAAGAGGAA
48969565 GGAAAGAAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
22 6 0.13
23 2 0.04
24 23 0.51
25 8 0.18
26 6 0.13
ACGTcount: A:0.67, C:0.01, G:0.29, T:0.02
Consensus pattern (24 bp):
AAAGAGGAAAAAGAAAAGAAGAGA
Found at i:48971189 original size:25 final size:24
Alignment explanation
Indices: 48971143--48971190 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
48971133 AATACTAATA
*
48971143 TTACATAAAGATATACTTATATAT
1 TTACATAAAGATATACTCATATAT
48971167 TTACATTAAAGATATA-TGCATATA
1 TTACA-TAAAGATATACT-CATATA
48971191 AAATAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (24 bp):
TTACATAAAGATATACTCATATAT
Found at i:48971264 original size:30 final size:29
Alignment explanation
Indices: 48971219--48971290 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 29
48971209 ATACGATATT
* * *
48971219 TAATATATACGTAATATGTAAAATAAAGA
1 TAATATATACATAATATATAAAATAAACA
*
48971248 TAATAATATACATAATATATAAAATACACA
1 TAAT-ATATACATAATATATAAAATAAACA
*
48971278 TAACATATACATA
1 TAATATATACATA
48971291 CATAACAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 13 0.35
30 24 0.65
ACGTcount: A:0.57, C:0.08, G:0.04, T:0.31
Consensus pattern (29 bp):
TAATATATACATAATATATAAAATAAACA
Found at i:48971285 original size:18 final size:19
Alignment explanation
Indices: 48971247--48971306 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
48971237 TAAAATAAAG
* *
48971247 ATAATAATATACATAATAT
1 ATAATAATACACATAACAT
48971266 ATAA-AATACACATAACAT
1 ATAATAATACACATAACAT
*
48971284 ATACATACATA-ACAAAACAT
1 ATA-ATA-ATACACATAACAT
48971304 ATA
1 ATA
48971307 CTATGGTTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 15 0.43
19 5 0.14
20 12 0.34
21 3 0.09
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (19 bp):
ATAATAATACACATAACAT
Found at i:48971686 original size:3 final size:3
Alignment explanation
Indices: 48971672--48971751 Score: 110
Period size: 3 Copynumber: 27.0 Consensus size: 3
48971662 GAGTATATAC
48971672 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
48971718 TAA TAA TAG T-A TAA TAT TAA TAA T-A TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
48971752 AAAGAATATT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
2 3 0.04
3 62 0.91
4 3 0.04
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:48980106 original size:93 final size:93
Alignment explanation
Indices: 48979947--48980119 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
48979937 CGCCCATAAG
* * *
48979947 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
48980012 ACAAGTTCAGATGCCTAGTTACATTTCA
66 ACAAGTTCAGATGCCTAGTTACATTTCA
* *
48980040 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
48980105 ACGAGTTCGGATGCC
66 ACAAGTTCAGATGCC
48980120 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCAGATGCCTAGTTACATTTCA
Found at i:48980115 original size:46 final size:46
Alignment explanation
Indices: 48979940--48980115 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
48979930 TGTAACCCGC
* * **
48979940 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * * * * * *
48979986 CCATAGGTGAACTCGGACTCAACTCAACAAGTTCAGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCAT
* *
48980032 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
48980079 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
48980116 TGCCCAAATA
Statistics
Matches: 102, Mismatches: 23, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
45 2 0.02
46 66 0.65
47 33 0.32
48 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:48980134 original size:46 final size:45
Alignment explanation
Indices: 48979992--48980134 Score: 119
Period size: 46 Copynumber: 3.1 Consensus size: 45
48979982 GCATCCATAG
* * * **
48979992 GTGAACTCGGACTCAACTCAACAAGTTCAGATGCCTAGTTACATTTCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCCA
* * * * *
48980040 -CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATAA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--CA
*
48980085 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCCA
48980131 GTGA
1 GTGA
48980135 CATGTCACTT
Statistics
Matches: 74, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
43 3 0.04
45 1 0.01
46 37 0.50
47 29 0.39
48 4 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCCA
Found at i:48987821 original size:15 final size:15
Alignment explanation
Indices: 48987797--48987826 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48987787 TTAAGTCATT
*
48987797 CATCATAATGACAAA
1 CATCACAATGACAAA
48987812 CATCACAATGACAAA
1 CATCACAATGACAAA
48987827 TGACCTATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.23, G:0.07, T:0.17
Consensus pattern (15 bp):
CATCACAATGACAAA
Found at i:48993896 original size:38 final size:38
Alignment explanation
Indices: 48993842--48993923 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
48993832 ATTTTGTAAT
48993842 ATCTTTATCTAAACACCAATCATTCATCCGATTAATCA
1 ATCTTTATCTAAACACCAATCATTCATCCGATTAATCA
*
48993880 ATCTTTATCTAGACACCAATCATTCATCCGATTAATCA
1 ATCTTTATCTAAACACCAATCATTCATCCGATTAATCA
48993918 ATCTTT
1 ATCTTT
48993924 TACAGTTTCT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.37
Consensus pattern (38 bp):
ATCTTTATCTAAACACCAATCATTCATCCGATTAATCA
Found at i:48996067 original size:23 final size:23
Alignment explanation
Indices: 48996041--48996089 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
48996031 TGGTTATACA
*
48996041 ATCTGTGTCATTCTAGTTATGTG
1 ATCTGTGTCATTCTAGTTATATG
*
48996064 ATCTGTGTCGTTCTAGTTATATG
1 ATCTGTGTCATTCTAGTTATATG
48996087 ATC
1 ATC
48996090 ACTATTAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.18, C:0.14, G:0.20, T:0.47
Consensus pattern (23 bp):
ATCTGTGTCATTCTAGTTATATG
Found at i:48999101 original size:24 final size:25
Alignment explanation
Indices: 48999074--48999121 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
48999064 CCTAGCAGAG
*
48999074 TCAGATCATATCAGA-AT-CAGATTT
1 TCAGAACATA-CAGATATACAGATTT
48999098 TCAGAACATACAGATATACAGATT
1 TCAGAACATACAGATATACAGATT
48999122 CCTACTCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (25 bp):
TCAGAACATACAGATATACAGATTT
Found at i:49007875 original size:50 final size:49
Alignment explanation
Indices: 49007750--49008024 Score: 193
Period size: 49 Copynumber: 5.8 Consensus size: 49
49007740 TTGGGTAAGT
* * *
49007750 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATTATCATCGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTATCATCATCGA
* *
49007799 GGCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGCAT-ATCCG-
1 TGCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTAT--CATCAT-CGA
* *
49007849 TGCCGATGCCATGTCCCGGACATGGTCTTATGCT-GAC-A-CATC-TC-A
1 TGCCGATGCCATGTCCCAGACATGGTCTTATACTAG-CTATCATCATCGA
* * * * * *
49007894 TAGCCGATG-TATGGCCTAGACAT-GTCTTACACTAGC-ACTCGTC-TCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTA-TCATCATCGA
* * * ** *
49007941 TGCCTATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAAT-G-
1 TGCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTATCATCATCGA
* *
49007988 TGGCCAATG-CATGTCCCAGACAT-GTCTTATGCTAGCT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCT
49008025 CACACCAGTG
Statistics
Matches: 180, Mismatches: 30, Indels: 35
0.73 0.12 0.14
Matches are distributed among these distances:
44 10 0.06
45 13 0.07
46 33 0.18
47 28 0.16
48 20 0.11
49 38 0.21
50 34 0.19
51 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTATCATCATCGA
Found at i:49008409 original size:30 final size:30
Alignment explanation
Indices: 49008373--49008443 Score: 124
Period size: 30 Copynumber: 2.4 Consensus size: 30
49008363 CATCTTCAAT
*
49008373 AAAATGACCATTTTGCCCCTAAACTTTGAC
1 AAAATGACCATTTTACCCCTAAACTTTGAC
*
49008403 AAAATGACCATTTTATCCCTAAACTTTGAC
1 AAAATGACCATTTTACCCCTAAACTTTGAC
49008433 AAAATGACCAT
1 AAAATGACCAT
49008444 AGTTACAGGC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (30 bp):
AAAATGACCATTTTACCCCTAAACTTTGAC
Found at i:49010255 original size:47 final size:44
Alignment explanation
Indices: 49010144--49010316 Score: 145
Period size: 47 Copynumber: 3.8 Consensus size: 44
49010134 TTGCATGTCC
* * * * *
49010144 GTGCCGATGCTATGTCTCTGACATGGTCTTACGCTGACACATC-T-C
1 GTGCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCAC-TCATAA
* * * *
49010189 GTGGCCGATGCGTGTCCCAGACATGTGTTACACTTGCACTCGTCTCAA
1 GT-GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTC--AT-AA
49010237 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAA
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAA
49010282 TGTGCCCGATGCATGTCCCAGACATGTCTTACACT
1 -GTG-CCGATGCATGTCCCAGACATGTCTTACACT
49010317 AGCTCACACC
Statistics
Matches: 105, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
43 2 0.02
44 11 0.10
45 14 0.13
46 27 0.26
47 30 0.29
48 21 0.20
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (44 bp):
GTGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATAA
Found at i:49010259 original size:92 final size:93
Alignment explanation
Indices: 49010145--49010316 Score: 231
Period size: 92 Copynumber: 1.8 Consensus size: 93
49010135 TGCATGTCCG
* * * * * *
49010145 TGCCGATGCTATGTCTCTGACATGGTCTTACGCTGACACATC-T-CGTGGCCGATGCGTGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACAC-TCATACGTGCCCGATGCATGTCCCA
*
49010208 GACATGTGTTACACTTGCACTCGTCTCAA
65 GACATGTCTTACACTTGCACTCGTCTCAA
* *
49010237 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGCCCGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCAT-ACGTGCCCGATGCATGTCCCA
49010302 GACATGTCTTACACT
65 GACATGTCTTACACT
49010317 AGCTCACACC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
91 2 0.03
92 35 0.51
94 31 0.46
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCATACGTGCCCGATGCATGTCCCAG
ACATGTCTTACACTTGCACTCGTCTCAA
Found at i:49012521 original size:15 final size:15
Alignment explanation
Indices: 49012501--49012531 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
49012491 AGAGCTTAGG
49012501 ATAGTAAAAAGAGCA
1 ATAGTAAAAAGAGCA
49012516 ATAGTAAAAAGAGCA
1 ATAGTAAAAAGAGCA
49012531 A
1 A
49012532 GAAATGGGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.19, T:0.13
Consensus pattern (15 bp):
ATAGTAAAAAGAGCA
Found at i:49014032 original size:40 final size:40
Alignment explanation
Indices: 49013977--49014134 Score: 262
Period size: 40 Copynumber: 4.0 Consensus size: 40
49013967 TGGAAAAAAA
* *
49013977 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCCGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
49014017 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
49014057 TATAACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
49014097 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
49014135 GTTACATCCG
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 110 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:49014160 original size:80 final size:80
Alignment explanation
Indices: 49013992--49014152 Score: 207
Period size: 80 Copynumber: 2.0 Consensus size: 80
49013982 CCGGGTTAAG
49013992 TCCCGAAGGCATTCGTGCCGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
1 TCCCGAAGGCATTCGTGCCGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
* * * ** *
49014057 TATAACTGGGTTAAG
66 TACAACCGAGCCAAA
* * * *
49014072 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTTGTGCT-GGTTG
1 TCCCGAAGGCATTCGTGCCGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTG-TGGGTTA
*
49014136 TTACATCCGAGCCAAA
65 TTACAACCGAGCCAAA
49014152 T
1 T
49014153 TCTGAAGGTA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
80 68 0.99
81 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (80 bp):
TCCCGAAGGCATTCGTGCCGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
TACAACCGAGCCAAA
Found at i:49021534 original size:79 final size:82
Alignment explanation
Indices: 49021423--49021607 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
49021413 GCTACTCGTT
* *
49021423 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
49021486 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
49021503 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
49021566 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
49021583 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49021608 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:49021607 original size:40 final size:40
Alignment explanation
Indices: 49021404--49021607 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
49021394 CGGAATTTAA
** *
49021404 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49021444 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
49021484 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49021523 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
49021563 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
49021603 CCGGA
1 CCGGA
49021608 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:49029487 original size:79 final size:82
Alignment explanation
Indices: 49029376--49029560 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
49029366 GCTACTCGTT
* *
49029376 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
49029439 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
49029456 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
49029519 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
49029536 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49029561 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:49029560 original size:40 final size:40
Alignment explanation
Indices: 49029357--49029560 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
49029347 CGGAATTTAA
** *
49029357 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49029397 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
49029437 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49029476 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
49029516 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
49029556 CCGGA
1 CCGGA
49029561 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:49033083 original size:40 final size:40
Alignment explanation
Indices: 49033028--49033185 Score: 235
Period size: 40 Copynumber: 4.0 Consensus size: 40
49033018 TGGAAAAAAA
* * *
49033028 TATAACTGAGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
49033068 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* **
49033108 TATAACGGGGTTAAGTCCCGAAGGCATTCGTTTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
49033148 TATAACCGGGTTAAGTCCTGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
49033186 GTTACATCCG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:49033209 original size:80 final size:80
Alignment explanation
Indices: 49033043--49033211 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 80
49033033 CTGAGTTAAG
49033043 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * * ** *
49033108 TATAACGGGGTTAAG
66 TACAACCGAGCCAAA
** * * * * *
49033123 TCCCGAAGGCATTCGTTTGGGTTATTATAACCGGGTTAAGTCCTGAAGGCATTTGTGCTGGTTGT
1 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
49033188 TACATCCGAGCCAAA
66 TACAACCGAGCCAAA
*
49033203 TTCCGAAGG
1 TCCCGAAGG
49033212 TATTTATGTT
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (80 bp):
TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
TACAACCGAGCCAAA
Found at i:49034765 original size:30 final size:30
Alignment explanation
Indices: 49034730--49034787 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
49034720 TAGGCACTTC
*
49034730 CACACGAGTA-ATCCACATGCCCGTGTGTGA
1 CACACGAGTAGA-CCACACGCCCGTGTGTGA
* *
49034760 CACACGGGTAGACTACACGCCCGTGTGT
1 CACACGAGTAGACCACACGCCCGTGTGT
49034788 CATGGCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (30 bp):
CACACGAGTAGACCACACGCCCGTGTGTGA
Found at i:49042691 original size:24 final size:23
Alignment explanation
Indices: 49042635--49042695 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
49042625 TTTCTCCATT
*
49042635 TTTACTTATTTATTTCATTCTTA
1 TTTACTTATTTATTTCATTCATA
*
49042658 TTAGTA-TTATTTATTATTATTCATA
1 TT--TACTTATTTATT-TCATTCATA
49042683 TTTACTTATTTAT
1 TTTACTTATTTAT
49042696 CATTTTACTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
23 4 0.12
24 17 0.53
25 11 0.34
ACGTcount: A:0.26, C:0.08, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTACTTATTTATTTCATTCATA
Found at i:49042707 original size:15 final size:17
Alignment explanation
Indices: 49042665--49042708 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
49042655 TTATTAGTAT
49042665 TATTTA-TTA-TTATTCA
1 TATTTACTTATTTA-TCA
49042681 TATTTACTTATTTATCA
1 TATTTACTTATTTATCA
49042698 T-TTTAC-TATTT
1 TATTTACTTATTT
49042709 TGTTCTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 5 0.19
16 11 0.42
17 7 0.27
18 3 0.12
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (17 bp):
TATTTACTTATTTATCA
Found at i:49045124 original size:20 final size:20
Alignment explanation
Indices: 49045099--49045139 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
49045089 AGCCTTTTAG
49045099 AGCATATATCTTTCTTGCTC
1 AGCATATATCTTTCTTGCTC
49045119 AGCATATATCTTTCTTGCTC
1 AGCATATATCTTTCTTGCTC
49045139 A
1 A
49045140 TTGATTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (20 bp):
AGCATATATCTTTCTTGCTC
Found at i:49053242 original size:37 final size:37
Alignment explanation
Indices: 49053192--49053268 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
49053182 AATATTATGA
*** *
49053192 TTACAAAGTTTAAACATAATAGTGTATCCATTTAATT
1 TTACAAAGTTTAAACATAATACAATATCAATTTAATT
49053229 TTACAAAGTTTAAACATAATACAATATCAATTTAATT
1 TTACAAAGTTTAAACATAATACAATATCAATTTAATT
49053266 TTA
1 TTA
49053269 AAAAATGATA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.40
Consensus pattern (37 bp):
TTACAAAGTTTAAACATAATACAATATCAATTTAATT
Found at i:49054173 original size:25 final size:25
Alignment explanation
Indices: 49054139--49054201 Score: 126
Period size: 25 Copynumber: 2.5 Consensus size: 25
49054129 TTTTTATTAA
49054139 TATTTTTATTTTTAAAAAATAAATT
1 TATTTTTATTTTTAAAAAATAAATT
49054164 TATTTTTATTTTTAAAAAATAAATT
1 TATTTTTATTTTTAAAAAATAAATT
49054189 TATTTTTATTTTT
1 TATTTTTATTTTT
49054202 GCTGAGGAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
TATTTTTATTTTTAAAAAATAAATT
Found at i:49057979 original size:17 final size:17
Alignment explanation
Indices: 49057957--49057990 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
49057947 CTCCAATTAC
49057957 ATCCTAAACAATTTATG
1 ATCCTAAACAATTTATG
49057974 ATCCTAAACAATTTATG
1 ATCCTAAACAATTTATG
49057991 CCTCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (17 bp):
ATCCTAAACAATTTATG
Found at i:49061680 original size:22 final size:23
Alignment explanation
Indices: 49061652--49061698 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
49061642 AAACAAGGAC
*
49061652 TCAACTTGCCC-TTTTTGCTAAA
1 TCAACTTGCCCTTTTTTGCCAAA
49061674 TCAACTTGCCCTTTTTTGCCAAA
1 TCAACTTGCCCTTTTTTGCCAAA
49061697 TC
1 TC
49061699 TCAAAACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.21, C:0.30, G:0.09, T:0.40
Consensus pattern (23 bp):
TCAACTTGCCCTTTTTTGCCAAA
Found at i:49065248 original size:85 final size:85
Alignment explanation
Indices: 49065105--49065283 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
49065095 CGCCGGCCAT
* *
49065105 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAATATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
49065170 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
49065190 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
49065255 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
49065275 GAGCATGGG
1 GAGCATGGG
49065284 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTAGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:49066582 original size:78 final size:82
Alignment explanation
Indices: 49066442--49066628 Score: 226
Period size: 78 Copynumber: 2.4 Consensus size: 82
49066432 GTTATTCGAA
* * *
49066442 TAATGTCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG
1 TAATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAG
49066506 GCATTTGTGCGAG-TAC
66 GCATTTGTGCGAGTTAC
* * * **
49066522 TAAT-TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAA
1 TAATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAA
49066583 GGCATTTGTGCGAGTTAC
65 GGCATTTGTGCGAGTTAC
* *
49066601 T-ATAACCGGGCTATGTCCCGAAGGCATT
1 TAATATCCGGGCTAAGTCCCGAAGGCATT
49066629 TGAACGAGTA
Statistics
Matches: 93, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 46 0.49
79 30 0.32
80 16 0.17
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (82 bp):
TAATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAG
GCATTTGTGCGAGTTAC
Found at i:49066588 original size:40 final size:40
Alignment explanation
Indices: 49066447--49066630 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
49066437 TCGAATAATG
* * * *
49066447 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
49066487 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG-TACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49066526 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49066565 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
49066606 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49066631 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 18 0.14
39 29 0.23
40 68 0.54
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49066648 original size:80 final size:77
Alignment explanation
Indices: 49066500--49066653 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 77
49066490 GGACTAAGAT
* **
49066500 CCGAAGGCATTTGTGCGAGTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
49066565 TCCGGGTTAAGTC
66 TCC-GGTTAAGTC
* *
49066578 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAG-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
49066641 TATATCCGGTTAA
62 TAAATCCGGTTAA
49066654 ATTCCAAGGT
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
78 21 0.32
79 21 0.32
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCCGGTTAAGTC
Found at i:49073275 original size:40 final size:37
Alignment explanation
Indices: 49073231--49073360 Score: 102
Period size: 38 Copynumber: 3.4 Consensus size: 37
49073221 GCTACTCGTT
*
49073231 CAAATGCTTCGGGACATAGCCCGCG-TTATAGTAACTCGCA
1 CAAATGCTTC-GGACATA-ACCG-GATT-TAGTAACTCGCA
*
49073271 CAAATGCCTTCGGACTTAACCGGATTTAGTAACTCGCA
1 CAAATG-CTTCGGACATAACCGGATTTAGTAACTCGCA
* * * * * *
49073309 CCAATGCCTTTGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATG-CTTCGGACATA-ACCGGATTTAGTAACTCGCA
49073347 CAAATGCCTTCGGA
1 CAAATG-CTTCGGA
49073361 TCTTAGTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
37 4 0.05
38 52 0.68
39 5 0.06
40 12 0.16
41 4 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (37 bp):
CAAATGCTTCGGACATAACCGGATTTAGTAACTCGCA
Found at i:49073308 original size:38 final size:39
Alignment explanation
Indices: 49073259--49073405 Score: 156
Period size: 38 Copynumber: 3.8 Consensus size: 39
49073249 GCCCGCGTTA
49073259 TAGTAACTCGCACAAATGCCTTCGGACTTA-ACCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAGACCGGATT
* * * *
49073297 TAGTAACTCGCACCAATGCCTTTGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAGACCGGATT
* * *
49073335 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTAGACCGGATT
* * *
49073375 TGGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 TAGTAAC-TCGCACAAATGCCTTC-GGACTTA
49073406 CCGGACATTA
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
37 4 0.04
38 51 0.57
40 24 0.27
41 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAGACCGGATT
Found at i:49074676 original size:84 final size:87
Alignment explanation
Indices: 49074570--49074749 Score: 321
Period size: 85 Copynumber: 2.1 Consensus size: 87
49074560 TATTTTATTG
* *
49074570 CCCATGCTCTTTTATTTTATTAATCCTTACATAATG-CACTACCCTAACATGTTTATGACATGTT
1 CCCATGCTCTTTTATTTTATTAATCCTTACATAATGCCACTACCCCAACATATTTATGACATGTT
49074634 TTTAGCCATAA-ATCTTGTCCA
66 TTTAGCCATAACATCTTGTCCA
49074655 CCCATGCTC-TTTATTTTATTAATCCTTACATAATGCCACTACCCCAACATATTTATGACATGTT
1 CCCATGCTCTTTTATTTTATTAATCCTTACATAATGCCACTACCCCAACATATTTATGACATGTT
49074719 TTTAGCCATAACATCTTGTCCA
66 TTTAGCCATAACATCTTGTCCA
49074741 CCCATGCTC
1 CCCATGCTC
49074750 ATGGCCGGCG
Statistics
Matches: 91, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
84 26 0.29
85 46 0.51
86 19 0.21
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.39
Consensus pattern (87 bp):
CCCATGCTCTTTTATTTTATTAATCCTTACATAATGCCACTACCCCAACATATTTATGACATGTT
TTTAGCCATAACATCTTGTCCA
Found at i:49127719 original size:27 final size:28
Alignment explanation
Indices: 49127556--49127706 Score: 241
Period size: 28 Copynumber: 5.4 Consensus size: 28
49127546 GAGATTGGCG
* * * *
49127556 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
49127585 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49127613 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49127641 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49127669 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
49127696 CTGAGTGTGCG
1 CTAAGTGTGCG
49127707 GACTTAATAT
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 24 0.21
28 78 0.67
29 15 0.13
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:49135601 original size:28 final size:28
Alignment explanation
Indices: 49135536--49135686 Score: 232
Period size: 28 Copynumber: 5.4 Consensus size: 28
49135526 GAGATTGGCG
* * * *
49135536 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
49135565 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49135593 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
49135621 CTAAGTGTACGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
49135649 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
49135676 CTGAGTGTGCG
1 CTAAGTGTGCG
49135687 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:49137791 original size:15 final size:15
Alignment explanation
Indices: 49137768--49137797 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
49137758 CAGTCCCAGC
*
49137768 AATCTTGGATGGCAA
1 AATCCTGGATGGCAA
49137783 AATCCTGGATGGCAA
1 AATCCTGGATGGCAA
49137798 TCCTATAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (15 bp):
AATCCTGGATGGCAA
Found at i:49138712 original size:17 final size:18
Alignment explanation
Indices: 49138690--49138729 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
49138680 AGTCACCAAA
49138690 TTATTTGAATATG-ATAT
1 TTATTTGAATATGAATAT
49138707 TTATTTGAATATGAATAT
1 TTATTTGAATATGAATAT
49138725 TTATT
1 TTATT
49138730 GTCTAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (18 bp):
TTATTTGAATATGAATAT
Found at i:49141330 original size:47 final size:47
Alignment explanation
Indices: 49141276--49141517 Score: 272
Period size: 47 Copynumber: 5.1 Consensus size: 47
49141266 TTAGGATTTT
** * *
49141276 ATGTGATGAATGTGAATGTGCATATATGAGGTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
49141323 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
49141370 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
49141417 ATGTGGTGAATATGAACATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** * * * *
49141464 ATGTGAAAAATGTATGAGAAATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
49141512 ATGTGA
1 ATGTGA
49141518 AATATGTATG
Statistics
Matches: 171, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
47 133 0.78
48 31 0.18
49 3 0.02
50 4 0.02
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:49141425 original size:25 final size:25
Alignment explanation
Indices: 49141350--49141425 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
49141340 ATGAATATAT
49141350 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
49141375 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
49141397 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
49141422 GTGA
1 GTGA
49141426 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:49141476 original size:94 final size:94
Alignment explanation
Indices: 49141299--49141607 Score: 286
Period size: 94 Copynumber: 3.2 Consensus size: 94
49141289 GAATGTGCAT
* * *
49141299 ATATGAGGTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAA
1 ATATGTGGTAAGGCCGAATGGCCAATGTGATGAATATGAACATGAATATATGTGATAAAGCCGAA
** *
49141364 TGGCCAATGTGATGAATG-TGAG-CATGC
66 TGGCCAATGTGAAAAATGATGAGAAATGC
* * *
49141391 ATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGTATATATGTGGTAAAGCCG
1 ATATGTG-G-TAAGGCCGAATGGCCAATGTGATGAATATGAACATGAATATATGTGATAAAGCCG
* *
49141456 AATGGCTAATGTGAAAAATGTATGAGAAATGT
64 AATGGCCAATGTGAAAAATG-ATGAGAAATGC
* * ** *
49141488 ATATGTGGTAAAGCCGAATGGCTAATGTGA--AATATGTATGA-GATATGCATATGTGGTAAAGC
1 ATATGTGGTAAGGCCGAATGGCCAATGTGATGAATATG-AACATGA-AT--ATATGTGATAAAGC
* * * * * *
49141550 TGAACGGTCAATGTGAAATATGTATATGAGATATGT
62 CGAATGGCCAATGTGAAAAATG---ATGAGAAATGC
*
49141586 ATATGTGGTAAAGCCGAATGGC
1 ATATGTGGTAAGGCCGAATGGC
49141608 TAGTGTGAAA
Statistics
Matches: 183, Mismatches: 23, Indels: 16
0.82 0.10 0.07
Matches are distributed among these distances:
92 6 0.03
93 8 0.04
94 71 0.39
95 19 0.10
96 36 0.20
97 10 0.05
98 33 0.18
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.27
Consensus pattern (94 bp):
ATATGTGGTAAGGCCGAATGGCCAATGTGATGAATATGAACATGAATATATGTGATAAAGCCGAA
TGGCCAATGTGAAAAATGATGAGAAATGC
Found at i:49141597 original size:50 final size:48
Alignment explanation
Indices: 49141439--49141623 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
49141429 TGAACATGTA
* *
49141439 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
49141487 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
49141535 CATATGTGGTAAAGCTGAACGG-TCAATGTGAAATATGTATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATG--TATGAGATATG
*
49141585 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
49141624 GGCAATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 80 0.65
50 42 0.34
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:49141603 original size:98 final size:96
Alignment explanation
Indices: 49141440--49141623 Score: 289
Period size: 98 Copynumber: 1.9 Consensus size: 96
49141430 GAACATGTAT
*
49141440 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAACGGCTAATGTGAAAAATGTATGAGAAATGTATATGTGGTAAAGCCGA
49141505 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* * *
49141536 ATATGTGGTAAAGCTGAACGG-TCAATGTGAAATATGTATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAACGGCT-AATGTGAAAAATG--TATGAGAAATGTATATGTGGTAAAGC
*
49141600 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
49141624 GGCAATGTGC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 31 0.39
98 48 0.60
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAACGGCTAATGTGAAAAATGTATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:49141915 original size:37 final size:37
Alignment explanation
Indices: 49141770--49141914 Score: 209
Period size: 37 Copynumber: 3.9 Consensus size: 37
49141760 GGAAATATAT
* *
49141770 TCCGCGTAAGACCCGATGACTACGCGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
49141807 TCCGAGTAAGACCCGATGACTACGTGTAGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
49141844 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
49141881 TCCGGGTAAGACCCGATAACTTCGTGTGGTGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
49141915 TCGTCTGAGC
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:49143451 original size:160 final size:160
Alignment explanation
Indices: 49143187--49143533 Score: 649
Period size: 160 Copynumber: 2.2 Consensus size: 160
49143177 TTGAGAGTGA
*
49143187 TATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTCTCGAAGAG
1 TATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCAGGCTAAGTCTCGAAGAG
49143252 CATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG
66 CATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG
49143317 CTAAACCCCGAAAAGCATTCGTGCTGGTGT
131 CTAAACCCCGAAAAGCATTCGTGCTGGTGT
49143347 TATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCAGGCTAAGTCTCGAAGAG
1 TATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCAGGCTAAGTCTCGAAGAG
*
49143412 CATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCTGTG
66 CATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG
*
49143477 CTAAACCCCGAAGAGCATTCGTGCTGGTGT
131 CTAAACCCCGAAAAGCATTCGTGCTGGTGT
* *
49143507 TATATCCGGGCTAGGTCCCGAAGAGCA
1 TATATCTGGGCTAAGTCCCGAAGAGCA
49143534 ATCATGCTGG
Statistics
Matches: 182, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
160 182 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (160 bp):
TATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGACGTATCCAGGCTAAGTCTCGAAGAG
CATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG
CTAAACCCCGAAAAGCATTCGTGCTGGTGT
Found at i:49143545 original size:40 final size:40
Alignment explanation
Indices: 49143182--49143533 Score: 452
Period size: 40 Copynumber: 8.8 Consensus size: 40
49143172 GAGAATTGAG
*
49143182 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** *
49143222 AGTGACGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
49143262 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
49143302 AGTGATATATCCGTGCTAAACCCCGAAAAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
49143342 GGTGTTATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** * *
49143382 AGTGACGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
49143422 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
49143462 AGTGATATATCTGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
49143502 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
49143534 ATCATGCTGG
Statistics
Matches: 264, Mismatches: 48, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 264 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:49147624 original size:47 final size:47
Alignment explanation
Indices: 49147570--49147811 Score: 281
Period size: 47 Copynumber: 5.1 Consensus size: 47
49147560 TTAGGATTTT
** *
49147570 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
49147617 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
49147664 ATGTGATGAATGTGAGCATGGATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
49147711 ATGTGGTGAATATGAACATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** * * * *
49147758 ATGTGAAAAATGTATGAGAAATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
49147806 ATGTGA
1 ATGTGA
49147812 AATATGTATG
Statistics
Matches: 173, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
47 135 0.78
48 31 0.18
49 3 0.02
50 4 0.02
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:49147893 original size:98 final size:96
Alignment explanation
Indices: 49147734--49147917 Score: 280
Period size: 98 Copynumber: 1.9 Consensus size: 96
49147724 GAACATGTAT
* * *
49147734 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAACGGCTAATGTGAAAAATATATGAGAAACGTATATGTGGTAAAGCCGA
49147799 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
49147830 ATATGTGGTAAAGCTGAACGG-TCAATGTGAAATATATATATGAGATACGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAACGGCT-AATGTGAAA-A-ATATATGAGAAACGTATATGTGGTAAAGC
*
49147894 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
49147918 GGCGATGTAC
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
95 1 0.01
96 28 0.35
97 1 0.01
98 49 0.62
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.29
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAACGGCTAATGTGAAAAATATATGAGAAACGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:49147909 original size:50 final size:49
Alignment explanation
Indices: 49147733--49147917 Score: 261
Period size: 48 Copynumber: 3.8 Consensus size: 49
49147723 TGAACATGTA
*
49147733 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAA-ATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATGTATGAGATATG
49147781 TATATGTGGTAAAGCCGAATGGCTAATGTG-AAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATGTATGAGATATG
* * * * *
49147829 CATATGTGGTAAAGCTGAACGG-TCAATGTGAAATATATATATGAGATACG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-ATATGTATGAGATATG
*
49147879 TATATGTGGTAAAGCCGAATGGCTAGTGTG-AAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATGTA
49147918 GGCGATGTAC
Statistics
Matches: 121, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
47 4 0.03
48 74 0.61
49 4 0.03
50 38 0.31
51 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (49 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATGTATGAGATATG
Found at i:49148209 original size:37 final size:37
Alignment explanation
Indices: 49148066--49148208 Score: 196
Period size: 37 Copynumber: 3.9 Consensus size: 37
49148056 AAATATATTT
* * * *
49148066 CGGGTAAGACCCGACGACTACGCGTAGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
49148103 CGGGTAAGACCCGATGACTACGTGTGGAGAGTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
49148140 CAGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * *
49148177 CGGGTAAGACCCGATAACTTCGTGTGGTGATT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATT
49148209 TCGTCTGAGC
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 94 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:49150456 original size:27 final size:27
Alignment explanation
Indices: 49150439--49150490 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
49150429 TTTGTTATGT
49150439 TTGGCACACTATATCACTTTGCCATGA
1 TTGGCACACTATATCACTTTGCCATGA
* * *
49150466 TTGTCACACTTTATTACTTTGCCAT
1 TTGGCACACTATATCACTTTGCCAT
49150491 AGTTCAACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (27 bp):
TTGGCACACTATATCACTTTGCCATGA
Found at i:49150626 original size:31 final size:30
Alignment explanation
Indices: 49150586--49150701 Score: 142
Period size: 31 Copynumber: 3.8 Consensus size: 30
49150576 ACTTGTAGTC
49150586 GAAGCTACCACTATTCACTAATCAGGTAGCT
1 GAAGCTACCACT-TTCACTAATCAGGTAGCT
* *
49150617 GGAGCTACCACTTTTCACTAATCAGTTAGCT
1 GAAGCTACCAC-TTTCACTAATCAGGTAGCT
* * *
49150648 GAAGCTACTACTTTCCACTGATCAGGTAGCA
1 GAAGCTACCACTTT-CACTAATCAGGTAGCT
* *
49150679 AAAGCTACCGCTTTCACTAATCA
1 GAAGCTACCACTTTCACTAATCA
49150702 TGTGACAGCC
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
30 11 0.15
31 60 0.83
32 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (30 bp):
GAAGCTACCACTTTCACTAATCAGGTAGCT
Found at i:49156373 original size:26 final size:26
Alignment explanation
Indices: 49156342--49156449 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
49156332 TGAAATGCCC
*
49156342 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
49156368 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
49156394 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
49156420 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
49156446 ATCA
1 ATCA
49156450 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:49163327 original size:40 final size:41
Alignment explanation
Indices: 49163279--49163384 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 41
49163269 TGAGGAATTG
* *
49163279 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATCATGCTAGAATGC
*
49163319 TATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTATCATGCTAGAATGC
* *
49163359 TATCTGGGC-TAGAGACCCGCAGGCTA
1 TATCCGGGCTTAAAGACCCGCAGGCTA
49163385 CAAGCTGGTA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
39 16 0.27
40 43 0.73
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (41 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATCATGCTAGAATGC
Found at i:49164327 original size:33 final size:33
Alignment explanation
Indices: 49164252--49164355 Score: 140
Period size: 33 Copynumber: 3.2 Consensus size: 33
49164242 ACTTTTCACA
* * *
49164252 TTGTACACACAAGGCGTACATTTCCTTTTCAAG
1 TTGTACACACAAAGTGTACATTTCCTTTTTAAG
*
49164285 -TGTACACACAAAGTGTACGTTTCCTTTTTAAG
1 TTGTACACACAAAGTGTACATTTCCTTTTTAAG
*
49164317 TTGTACACACACAGTGTACATTTCCTTTTCT-AG
1 TTGTACACACAAAGTGTACATTTCCTTTT-TAAG
49164350 TTGTAC
1 TTGTAC
49164356 CTTTTAGGTA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
32 28 0.44
33 34 0.54
34 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (33 bp):
TTGTACACACAAAGTGTACATTTCCTTTTTAAG
Found at i:49165304 original size:12 final size:12
Alignment explanation
Indices: 49165274--49165308 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
49165264 TATATCTAAT
*
49165274 TAATACAATTTC
1 TAATTCAATTTC
49165286 T-ATTCAATTTC
1 TAATTCAATTTC
49165297 TAATTCAATTTC
1 TAATTCAATTTC
49165309 CACAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATTCAATTTC
Found at i:49167331 original size:14 final size:14
Alignment explanation
Indices: 49167312--49167339 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
49167302 CCAAAATATA
49167312 TTTTATTTTTTTAT
1 TTTTATTTTTTTAT
49167326 TTTTATTTTTTTAT
1 TTTTATTTTTTTAT
49167340 CACATGGCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTATTTTTTTAT
Found at i:49167964 original size:20 final size:19
Alignment explanation
Indices: 49167941--49167985 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
49167931 AGGGACTAAA
49167941 ATGAAAATTTGTAAAATTTG
1 ATGAAAATTT-TAAAATTTG
* *
49167961 ATGAAAAATTTTGAAATTTT
1 ATG-AAAATTTTAAAATTTG
49167981 ATGAA
1 ATGAA
49167986 TACATGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 13 0.59
21 7 0.32
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (19 bp):
ATGAAAATTTTAAAATTTG
Found at i:49170383 original size:45 final size:45
Alignment explanation
Indices: 49170314--49170432 Score: 143
Period size: 45 Copynumber: 2.6 Consensus size: 45
49170304 GAATCAAATA
* * * * *
49170314 CGATGCCGATGTCCCAGACATGGTCTTACAC-ATAACCACA-TAGAT
1 CGATGCCAACGTCCAAGACGTGGTCTTACACGA-AAACA-ATTAGAT
* *
49170359 CGATGCCAACGTCCTAGACGTGGTCTTACACGAAAACAATTATAT
1 CGATGCCAACGTCCAAGACGTGGTCTTACACGAAAACAATTAGAT
49170404 CGATGCCAACGTCCAAGACGTGGTCTTAC
1 CGATGCCAACGTCCAAGACGTGGTCTTAC
49170433 TCAGAAACAC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
44 1 0.02
45 63 0.97
46 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
CGATGCCAACGTCCAAGACGTGGTCTTACACGAAAACAATTAGAT
Found at i:49170441 original size:45 final size:43
Alignment explanation
Indices: 49170294--49170446 Score: 141
Period size: 45 Copynumber: 3.5 Consensus size: 43
49170284 TCTCAGACAG
* * * * * *
49170294 GGTCTTACTCGAATCAA-ATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACACGAAACAATATATCGATGCCAACGTCCAAGACGT
* *
49170335 GGTCTTACAC-ATAACCACATAGATCGATGCCAACGTCCTAGACGT
1 GGTCTTACACGA-AA-CA-ATATATCGATGCCAACGTCCAAGACGT
49170380 GGTCTTACACGAAAACAATTATATCGATGCCAACGTCCAAGACGT
1 GGTCTTACACG-AAACAA-TATATCGATGCCAACGTCCAAGACGT
*
49170425 GGTCTTACTCAGAAACACATAT
1 GGTCTTACAC-GAAACA-ATAT
49170447 CAGAATCCAT
Statistics
Matches: 92, Mismatches: 10, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
40 1 0.01
41 10 0.11
42 2 0.02
43 1 0.01
44 3 0.03
45 70 0.76
46 4 0.04
47 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAACAATATATCGATGCCAACGTCCAAGACGT
Found at i:49177054 original size:40 final size:40
Alignment explanation
Indices: 49176842--49177045 Score: 329
Period size: 40 Copynumber: 5.1 Consensus size: 40
49176832 AACCCAAGTA
* *
49176842 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
49176881 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
49176921 CCTTCGGGACTTGGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
49176961 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
49177001 TCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
49177041 CCTTC
1 CCTTC
49177046 AGATCTTAGT
Statistics
Matches: 152, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.09
40 139 0.91
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:49178371 original size:13 final size:13
Alignment explanation
Indices: 49178350--49178383 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
49178340 TTATTTTATT
49178350 ATTTCTAACACAAA
1 ATTT-TAACACAAA
49178364 ATTTTAACACAAA
1 ATTTTAACACAAA
49178377 ATGTTTA
1 AT-TTTA
49178384 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:49181310 original size:40 final size:40
Alignment explanation
Indices: 49181253--49181393 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 40
49181243 TCGAATGATG
49181253 TCCGGGCTAAGTCCCGAAGGC-TTTGTACTAAGCGACTACA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACT-AGCGACTACA
* * *
49181293 TCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACTATA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACTAGCGACTACA
* * * * *
49181333 TCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACTAGCGACTACA
* *
49181373 TCCGGGTTAAGACCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
49181394 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 80 0.90
41 8 0.09
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACTAGCGACTACA
Found at i:49183415 original size:40 final size:40
Alignment explanation
Indices: 49183326--49183509 Score: 225
Period size: 39 Copynumber: 4.7 Consensus size: 40
49183316 GCTCCTCGTT
*
49183326 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
49183365 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
49183405 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
49183444 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
49183485 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49183510 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 62 0.49
40 51 0.40
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:49183444 original size:79 final size:81
Alignment explanation
Indices: 49183326--49183509 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
49183316 GCTCCTCGTT
* *
49183326 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATCGCACAAATGCCTTC-GGATCTTAACCCG
* *
49183389 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
49183405 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTA-ATCGCACAAATGCCTTCGGATCTTAACCCG
* *
49183468 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
49183485 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49183510 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 17 0.19
79 55 0.60
80 19 0.21
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:49191287 original size:79 final size:81
Alignment explanation
Indices: 49191185--49191369 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
49191175 GCTCCTCGTT
* * *
49191185 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATTCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
49191247 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
**
49191265 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
49191329 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
49191345 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49191370 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 5 0.05
79 52 0.57
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:49191369 original size:40 final size:40
Alignment explanation
Indices: 49191185--49191369 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
49191175 GCTCCTCGTT
* * *
49191185 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* * *
49191225 CAAATTCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
49191265 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
49191304 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
49191345 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49191370 CATCATTCAA
Statistics
Matches: 122, Mismatches: 13, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
38 3 0.02
39 30 0.25
40 74 0.61
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Done.