Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 155 of 253
Found at i:49833204 original size:46 final size:46
Alignment explanation
Indices: 49833082--49833211 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
49833072 TGTTTGGCAT
* *
49833082 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TTATGGATGCGAACGC
49833129 CCGAACTCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACT-CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
49833176 CCGAGCTCGTTGAGTTGGGTCTGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49833212 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
46 27 0.35
47 27 0.35
48 23 0.30
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:49836878 original size:6 final size:6
Alignment explanation
Indices: 49836867--49837053 Score: 163
Period size: 6 Copynumber: 30.8 Consensus size: 6
49836857 AACCAAAATG
*
49836867 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
49836915 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * *
49836964 AGAATC A-ATAAC AGAATC AGAATC GGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AGA-ATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
49837012 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
49837054 GTGAATGCAA
Statistics
Matches: 147, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 10 0.07
6 125 0.85
7 9 0.06
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:49836882 original size:30 final size:30
Alignment explanation
Indices: 49836846--49837053 Score: 227
Period size: 30 Copynumber: 7.1 Consensus size: 30
49836836 AAGAAACATT
* *
49836846 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
* *
49836876 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
49836906 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
49836936 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
*
49836967 ATC--AA-T---AACAGAATCAGAATCGGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* *
49836991 ATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
49837021 ATCAGAATTACGTG-ACAGAATCAGAATCAGA
1 ATCAGAATTA-G-GAACAGAATCAGAATCAGA
49837052 AT
1 AT
49837054 GTGAATGCAA
Statistics
Matches: 153, Mismatches: 13, Indels: 23
0.81 0.07 0.12
Matches are distributed among these distances:
24 19 0.12
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 84 0.55
31 44 0.29
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:49836967 original size:85 final size:85
Alignment explanation
Indices: 49836867--49837053 Score: 338
Period size: 85 Copynumber: 2.2 Consensus size: 85
49836857 AACCAAAATG
*
49836867 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAATAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
49836932 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
* *
49836952 AGAATCAGAATCAGAATCAATAACAGAATCAGAATCGGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAATAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
49837017 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
49837037 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
49837054 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 98 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAATAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:49837208 original size:27 final size:26
Alignment explanation
Indices: 49837171--49837236 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
49837161 AGCATGGCTG
*
49837171 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
49837197 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
49837224 CCAGAATCAGATA
1 CCAGAA-CAGATA
49837237 ATGTGGTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:49837251 original size:27 final size:27
Alignment explanation
Indices: 49837195--49837252 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
49837185 GTGACAGAGT
* * *
49837195 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
*
49837222 CACCAGA-ATCAGATAATGTGGTAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
49837249 CACC
1 CACC
49837253 TAACAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:49837423 original size:22 final size:22
Alignment explanation
Indices: 49837375--49837433 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
49837365 GTAAATACGT
*
49837375 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
49837397 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
49837419 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
49837434 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:49837568 original size:27 final size:26
Alignment explanation
Indices: 49837521--49837576 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 26
49837511 TCGATCGGTC
49837521 AACAGATATTGTGGCAGAGCCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
*
49837547 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
49837574 AAC
1 AAC
49837577 GCTTCCTCCG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:49837805 original size:27 final size:27
Alignment explanation
Indices: 49837775--49837970 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
49837765 GGGGCAAAAT
* * *
49837775 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49837802 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49837829 GGTATTTCTACCCTACTAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
49837856 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49837883 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
49837910 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
***
49837937 AAAAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49837964 AGTAATT
1 GGTAATT
49837971 TCACAATCAA
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:49837919 original size:81 final size:81
Alignment explanation
Indices: 49837777--49837970 Score: 255
Period size: 81 Copynumber: 2.4 Consensus size: 81
49837767 GGCAAAATGG
* * * * * *
49837777 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
*
49837842 TACTA-GGGTATTTCGA
66 TA-TAGGGGTATTTCAA
* * * *
49837858 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
49837923 TATAGGGGTATTTCAA
66 TATAGGGGTATTTCAA
* *
49837939 AAATTCTACCCTACAAGGGTATTTCAGTAATT
1 TAATTCTACCCTACAAGGGTATTTCGGTAATT
49837971 TCACAATCAA
Statistics
Matches: 97, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 2 0.02
81 95 0.98
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
TATAGGGGTATTTCAA
Found at i:49838011 original size:27 final size:27
Alignment explanation
Indices: 49837980--49838303 Score: 350
Period size: 27 Copynumber: 12.0 Consensus size: 27
49837970 TTCACAATCA
*
49837980 AGGGTAAAACGATAATTCTATAAATTG
1 AGGGTAAAACGATAATTCTGTAAATTG
* * *
49838007 AGGGTAAAATGATAATTTTGTAAACTG
1 AGGGTAAAACGATAATTCTGTAAATTG
* **
49838034 AGGGT-AAACCAGTAATTCTGTAAATCA
1 AGGGTAAAACGA-TAATTCTGTAAATTG
* ** *
49838061 AGGGTAAAAC-AGTAATTTTACAAATCG
1 AGGGTAAAACGA-TAATTCTGTAAATTG
* *
49838088 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGATAATTCTGTAAATTG
*
49838115 AGGGTAAAAC-AGTAATTCTGTAAACTG
1 AGGGTAAAACGA-TAATTCTGTAAATTG
* *
49838142 AGGGTAAAATGGTAATTCTGTAAATTG
1 AGGGTAAAACGATAATTCTGTAAATTG
*
49838169 AGGGTAAAA-TAGTAATTCTGTAAATTG
1 AGGGTAAAACGA-TAATTCTGTAAATTG
* * *
49838196 AGGGTAAAAAGGTAATTCTGTAAATCG
1 AGGGTAAAACGATAATTCTGTAAATTG
* *
49838223 AGGGTAAAACGGTAATTCTGTAAACTG
1 AGGGTAAAACGATAATTCTGTAAATTG
* * *
49838250 AGGGTAAAACGTTAATTCTATAAATCG
1 AGGGTAAAACGATAATTCTGTAAATTG
*
49838277 AGGGTAAAACGGTAATTCTGTAAATTG
1 AGGGTAAAACGATAATTCTGTAAATTG
49838304 GGAGTACTTT
Statistics
Matches: 251, Mismatches: 39, Indels: 14
0.83 0.13 0.05
Matches are distributed among these distances:
26 4 0.02
27 243 0.97
28 4 0.02
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
AGGGTAAAACGATAATTCTGTAAATTG
Found at i:49838091 original size:81 final size:81
Alignment explanation
Indices: 49837975--49838301 Score: 410
Period size: 81 Copynumber: 4.0 Consensus size: 81
49837965 GTAATTTCAC
* * *
49837975 AATCAAGGGTAAAACGATAATTCTATAAATTGAGGGTAAAATGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTGTAAATC-GAGGGT
*
49838039 AAACCAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* * * * *
49838056 AATCAAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
49838121 AAACAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* * * * *
49838137 AA-CTGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAA-TAGTAATTCTGTAAATTGAGGG
1 AATC-AAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGA-TAATTCTGTAAATCGAGGG
49838200 TAAAA-AGGTAATTCTGTA
64 TAAAACA-GTAATTCTGTA
* * * * *
49838218 AATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGTTAATTCTATAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
*
49838283 AAACGGTAATTCTGTA
66 AAACAGTAATTCTGTA
49838299 AAT
1 AAT
49838302 TGGGAGTACT
Statistics
Matches: 213, Mismatches: 26, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
80 2 0.01
81 209 0.98
82 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:49838320 original size:54 final size:54
Alignment explanation
Indices: 49837980--49838300 Score: 386
Period size: 54 Copynumber: 5.9 Consensus size: 54
49837970 TTCACAATCA
* * * *
49837980 AGGGT-AAAACGATAATTCTATAAATTGAGGGTAAAA-TGATAATTTTGTAAACTG
1 AGGGTAAAAACG-TAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAACTG
* * *
49838034 AGGGT-AAACCAGTAATTCTGTAAATCAAGGGTAAAACAGTAATT-T-TACAAATCG
1 AGGGTAAAAAC-GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA-AACT-G
49838088 AGGGT-AAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
1 AGGGTAAAAAC-GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
** * * *
49838142 AGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATTG
1 AGGGTAAAAACGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
* *
49838196 AGGGTAAAAAGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTG
1 AGGGTAAAAACGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
* *
49838250 AGGGT-AAAACGTTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA
1 AGGGTAAAAACG-TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA
49838301 TTGGGAGTAC
Statistics
Matches: 237, Mismatches: 22, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
52 2 0.01
53 9 0.04
54 215 0.91
55 9 0.04
56 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
AGGGTAAAAACGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
Found at i:49847211 original size:30 final size:30
Alignment explanation
Indices: 49847177--49847277 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 30
49847167 GACCTGAATG
49847177 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTGTTACTATTTACTGCATGC
* * *
49847207 CATG-TT-ATTATTATCTGATAAGGTTGACCTGAATG-
1 CATGTTTGACTGTTA-CT-AT----TT-A-CTGCATGC
49847242 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTGTTACTATTTACTGCATGC
49847272 CATGTT
1 CATGTT
49847278 ATTATTATCT
Statistics
Matches: 54, Mismatches: 6, Indels: 22
0.66 0.07 0.27
Matches are distributed among these distances:
28 5 0.09
29 10 0.19
30 13 0.24
31 2 0.04
34 2 0.04
35 7 0.13
36 10 0.19
37 5 0.09
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (30 bp):
CATGTTTGACTGTTACTATTTACTGCATGC
Found at i:49847264 original size:65 final size:65
Alignment explanation
Indices: 49847160--49847290 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
49847150 CCCCTAGGGT
49847160 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
49847225 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
49847290 T
1 T
49847291 GCATAGGACT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:49850412 original size:47 final size:46
Alignment explanation
Indices: 49850340--49850530 Score: 233
Period size: 47 Copynumber: 4.1 Consensus size: 46
49850330 ACACGTTTCG
* * * *
49850340 CATTAGCCATTCGGCTTTACCACATATAT-ATACTTCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATCAT-CTT-CACATTCATCA
** *
49850387 CATTGGCCATTTTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATCTTCACATTCATCA
*
49850434 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATCTTCACATTCATCA
*
49850481 CATTGGCCATTCGGCCTTATCTCATATATACA-CATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATAT-CATC-TTCACATTCATCA
49850528 CAT
1 CAT
49850531 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
47 125 0.97
48 2 0.02
49 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (46 bp):
CATTGGCCATTCGGCCTTATCACATATATCATCTTCACATTCATCA
Found at i:49850458 original size:22 final size:22
Alignment explanation
Indices: 49850430--49850501 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
49850420 GTTCACATTC
49850430 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
49850452 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
49850476 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
49850499 ATC
1 ATC
49850502 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:49860187 original size:49 final size:47
Alignment explanation
Indices: 49860013--49860391 Score: 605
Period size: 47 Copynumber: 7.9 Consensus size: 47
49860003 CCCTTCGGGA
* * * * * *
49860013 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49860060 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49860107 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49860154 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49860203 CTTATCTCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA--TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49860252 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49860299 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49860346 CTTATCACATATATATACACTTTCACATTCATCACATTGGCTATTA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
49860392 CGCCATACTA
Statistics
Matches: 312, Mismatches: 14, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 189 0.61
49 120 0.38
51 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49860351 original size:192 final size:192
Alignment explanation
Indices: 49860024--49860391 Score: 655
Period size: 192 Copynumber: 1.9 Consensus size: 192
49860014 TTATCACATT
* * * *
49860024 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
49860089 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49860154 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATA
131 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATA
* * *
49860216 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
49860281 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49860346 CTTATCACATATATATACACTTTCACATTCATCACATTGGCTATTA
131 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
49860392 CGCCATACTA
Statistics
Matches: 167, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
192 167 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (192 bp):
TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATA
Found at i:49865042 original size:46 final size:45
Alignment explanation
Indices: 49864946--49865116 Score: 143
Period size: 46 Copynumber: 3.7 Consensus size: 45
49864936 TCTCGTATCT
* * * * *
49864946 GATGCATGTCCCAGACATGTCTTAGACTGGCTTACT-TCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC--ACTCTCTCAATGTC
*
49864992 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGTT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCTCAATGTC
* * *
49865038 GATGCCATATCCCGGACATGGTCTTACACT-G-GCTCTCAT-AATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCTC-TCAATGT---C
*
49865086 GATGCATGTCCCAGACATGTCTTATACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
49865117 TCACGCAAGT
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
44 3 0.03
45 7 0.07
46 52 0.51
47 26 0.25
48 14 0.14
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCTCTCAATGTC
Found at i:49865071 original size:94 final size:92
Alignment explanation
Indices: 49864945--49865116 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 92
49864935 ATCTCGTATC
* * **
49864945 TGATGCATGTCCCAGACATGTCTTAGACTGGCT-T-ACTTCTCGAGGCCGATGCATGTCCCAGAC
1 TGATGCATATCCCAGACATGTCTTACACTGGCTCTCA-TAAT-GAGGCCGATGCATGTCCCAGAC
49865008 ATGTCTTACACTAGCACTCGTCTCAATGT
64 ATGTCTTACACTAGCACTCGTCTCAATGT
* *
49865037 TGATGCCATATCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
1 TGATG-CATATCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGAC
*
49865102 ATGTCTTATACTAGC
64 ATGTCTTACACTAGC
49865117 TCACGCAAGT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 5 0.07
93 12 0.17
94 48 0.70
95 3 0.04
96 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (92 bp):
TGATGCATATCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCACTCGTCTCAATGT
Found at i:49868476 original size:29 final size:30
Alignment explanation
Indices: 49868418--49868545 Score: 178
Period size: 29 Copynumber: 4.5 Consensus size: 30
49868408 ATAGTAAGTC
*
49868418 CGCACACTTAGTGTTAT--ATAATCAAACT
1 CGCACACTTAGTGCTATGCATAATCAAACT
49868446 CGCACACTTAGTGCT-TGCATAATCAAACT
1 CGCACACTTAGTGCTATGCATAATCAAACT
49868475 CGCACACTTAGTGCTAT--ATAATCAAACT
1 CGCACACTTAGTGCTATGCATAATCAAACT
* * *
49868503 CGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCTATGCATAATCAAACT
49868532 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49868546 CAATCTCATG
Statistics
Matches: 91, Mismatches: 4, Indels: 9
0.88 0.04 0.09
Matches are distributed among these distances:
27 1 0.01
28 42 0.46
29 46 0.51
30 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (30 bp):
CGCACACTTAGTGCTATGCATAATCAAACT
Found at i:49868506 original size:57 final size:57
Alignment explanation
Indices: 49868417--49868545 Score: 206
Period size: 57 Copynumber: 2.3 Consensus size: 57
49868407 TATAGTAAGT
*
49868417 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TGCATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATGCA-AATCAAAC
* * *
49868474 TCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATGCAAATCAAAC
49868531 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
49868546 CAATCTCATG
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 62 0.94
58 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATGCAAATCAAAC
Found at i:49874808 original size:37 final size:37
Alignment explanation
Indices: 49874758--49874836 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
49874748 TTATTACGAA
* * *
49874758 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
49874795 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
49874832 GTCTT
1 GTCTT
49874837 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:49875005 original size:24 final size:24
Alignment explanation
Indices: 49874978--49875026 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
49874968 TACACTTTCA
49874978 CATCCATCACGTTGGCCACTCGGC
1 CATCCATCACGTTGGCCACTCGGC
*
49875002 CATCCATCACGTTGGCCATTCGGC
1 CATCCATCACGTTGGCCACTCGGC
49875026 C
1 C
49875027 CTGTCACATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.16, C:0.41, G:0.20, T:0.22
Consensus pattern (24 bp):
CATCCATCACGTTGGCCACTCGGC
Found at i:49875081 original size:47 final size:47
Alignment explanation
Indices: 49875006--49875123 Score: 191
Period size: 47 Copynumber: 2.5 Consensus size: 47
49874996 CTCGGCCATC
* * * * *
49875006 CATCACGTTGGCCATTCGGCCCTGTCACATATATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
49875053 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
49875100 CATCACATCGGCCATTAGGCCTTA
1 CATCACATCGGCCATTAGGCCTTA
49875124 CTATCATTTC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
Found at i:49878054 original size:21 final size:20
Alignment explanation
Indices: 49878016--49878055 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
49878006 GCTCTGGAAC
*
49878016 AGGGCACACACCCGTGTAGA
1 AGGGCACACACCCATGTAGA
*
49878036 AGGGCAACACGCCCATGTAG
1 AGGGC-ACACACCCATGTAG
49878056 CCATTAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.30, C:0.30, G:0.30, T:0.10
Consensus pattern (20 bp):
AGGGCACACACCCATGTAGA
Found at i:49879258 original size:46 final size:44
Alignment explanation
Indices: 49879152--49879374 Score: 177
Period size: 46 Copynumber: 4.9 Consensus size: 44
49879142 TGGTCTTACA
49879152 CATATCT-GT-GCCGATGTCATGTCCCAGACATGGTCTTACACTGG
1 CATATCTCGTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGG
* *
49879196 CATATCTCGTATCCGATGCATGTCCCAGACATGTCTTAGACTGG
1 CATATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGG
* **
49879240 CTTATGTCTCG-AGGCCGATGCATGTCCCAGACATGTCTTACACTAA
1 C--ATATCTCGTA-GCCGATGCATGTCCCAGACATGTCTTACACTGG
* * * *
49879286 CA-CTCGTCTTAATGCCGATGCCATATCCCGGACATGGTCTTACACTGG
1 CATATC-TCGT-A-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGG
* * *
49879334 C-TCTCATAATGTGGCCGATGCATGTCCCCAGACATGTCTTA
1 CATATC-T--CGTAGCCGATGCATGT-CCCAGACATGTCTTA
49879375 TACTAGCTCA
Statistics
Matches: 145, Mismatches: 20, Indels: 25
0.76 0.11 0.13
Matches are distributed among these distances:
43 2 0.01
44 22 0.15
45 17 0.12
46 51 0.35
47 22 0.15
48 30 0.21
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (44 bp):
CATATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGG
Found at i:49881610 original size:27 final size:26
Alignment explanation
Indices: 49881580--49881665 Score: 88
Period size: 26 Copynumber: 3.3 Consensus size: 26
49881570 TTTTTATTAA
*
49881580 ATTTTAATAGAATTATTATTAAATAT
1 ATTTTAATATAATTATTATTAAATAT
* *
49881606 GA-TTTAATATAA--ATAATTTAATCAT
1 -ATTTTAATATAATTATTATTAAAT-AT
*
49881631 ATTTTAATATATTTATTATTAAATAT
1 ATTTTAATATAATTATTATTAAATAT
*
49881657 AATTTAATA
1 ATTTTAATA
49881666 AAAATAATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
24 9 0.19
25 11 0.23
26 19 0.40
27 9 0.19
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (26 bp):
ATTTTAATATAATTATTATTAAATAT
Found at i:49881698 original size:51 final size:49
Alignment explanation
Indices: 49881591--49881698 Score: 132
Period size: 51 Copynumber: 2.2 Consensus size: 49
49881581 TTTTAATAGA
* * *
49881591 ATTATTATTAAATATGATTTAATATAAATAATTTAATCATATTTTAATAT
1 ATTATTATTAAATATAATTTAATAAAAATAA-TTAATCATATCTTAATAT
49881641 ATTTATTATTAAATATAATTTAATAAAAATAA-TAAT-ATATAACTTAATA-
1 A-TTATTATTAAATATAATTTAATAAAAATAATTAATCATAT--CTTAATAT
49881690 ATTATTATT
1 ATTATTATT
49881699 TTTATATTTA
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
48 12 0.23
49 5 0.10
50 7 0.13
51 28 0.54
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (49 bp):
ATTATTATTAAATATAATTTAATAAAAATAATTAATCATATCTTAATAT
Found at i:49888796 original size:3 final size:3
Alignment explanation
Indices: 49888788--49888855 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
49888778 GAAATTGTAG
*
49888788 ATT ATT ATT ATT TTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
49888836 ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
49888856 CATCATCATC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:49888860 original size:3 final size:3
Alignment explanation
Indices: 49888854--49888880 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
49888844 TATTATTATT
49888854 ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC
49888881 TTCTGGAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:49890467 original size:13 final size:13
Alignment explanation
Indices: 49890449--49890477 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
49890439 CTTATATGGT
49890449 AATTAGACCATTA
1 AATTAGACCATTA
49890462 AATTAGACCATTA
1 AATTAGACCATTA
49890475 AAT
1 AAT
49890478 GGAGTTAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (13 bp):
AATTAGACCATTA
Found at i:49891618 original size:25 final size:24
Alignment explanation
Indices: 49891582--49891634 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
49891572 CACAAACGCA
*
49891582 GCTCTTTATGAGCGTCCTGATATAG
1 GCTCTTTATGAGCGTCCTGACAT-G
* *
49891607 GCTCTTTGTGAGCTTCCTGACATG
1 GCTCTTTATGAGCGTCCTGACATG
49891631 GCTC
1 GCTC
49891635 ACTCGAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.36
Consensus pattern (24 bp):
GCTCTTTATGAGCGTCCTGACATG
Found at i:49891818 original size:8 final size:8
Alignment explanation
Indices: 49891805--49891836 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
49891795 TGTCTCAAGA
49891805 GAGTGCTT
1 GAGTGCTT
49891813 GAGTGCTT
1 GAGTGCTT
49891821 GAGTGCTT
1 GAGTGCTT
49891829 GAGTGCTT
1 GAGTGCTT
49891837 CTTGATTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.12, C:0.12, G:0.38, T:0.38
Consensus pattern (8 bp):
GAGTGCTT
Found at i:49893268 original size:23 final size:23
Alignment explanation
Indices: 49893227--49893270 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
49893217 AACCCCTAAT
49893227 ATGCATAATTGATTGATTTATGA
1 ATGCATAATTGATTGATTTATGA
*
49893250 ATGCATGA-TGATTGCATTTAT
1 ATGCATAATTGATTG-ATTTAT
49893271 TATTAATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (23 bp):
ATGCATAATTGATTGATTTATGA
Found at i:49913113 original size:25 final size:25
Alignment explanation
Indices: 49913085--49913190 Score: 69
Period size: 25 Copynumber: 4.4 Consensus size: 25
49913075 CGTAATATGT
49913085 ATTTATTATTAAAATATTAATATAA
1 ATTTATTATTAAAATATTAATATAA
* *
49913110 ATTT-TTCAATAATATATT-A-A-AA
1 ATTTATT-ATTAAAATATTAATATAA
* * *
49913132 ATATATTAATAAAATTTTAATATAA
1 ATTTATTATTAAAATATTAATATAA
* * * *
49913157 A-TAATTTATTAAAATAATAAAATAT
1 ATTTA-TTATTAAAATATTAATATAA
*
49913182 ATTGATTAT
1 ATTTATTAT
49913191 ATTGTTATAT
Statistics
Matches: 61, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
22 14 0.23
23 4 0.07
24 5 0.08
25 36 0.59
26 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (25 bp):
ATTTATTATTAAAATATTAATATAA
Found at i:49913151 original size:11 final size:11
Alignment explanation
Indices: 49913088--49913181 Score: 59
Period size: 11 Copynumber: 8.3 Consensus size: 11
49913078 AATATGTATT
*
49913088 TATTATTAAAA
1 TATTAATAAAA
49913099 TATTAATATAAA
1 TATTAATA-AAA
* *
49913111 TTTTTCAATAATA
1 -TATT-AATAAAA
49913124 TATTAA-AAATA
1 TATTAATAAA-A
49913135 TATTAATAAAA
1 TATTAATAAAA
*
49913146 TTTTAATATAAA
1 TATTAATA-AAA
* *
49913158 TAATTTATTAAA
1 T-ATTAATAAAA
49913170 -A-TAATAAAA
1 TATTAATAAAA
49913179 TAT
1 TAT
49913182 ATTGATTATA
Statistics
Matches: 63, Mismatches: 11, Indels: 18
0.68 0.12 0.20
Matches are distributed among these distances:
9 6 0.10
10 4 0.06
11 24 0.38
12 16 0.25
13 9 0.14
14 4 0.06
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (11 bp):
TATTAATAAAA
Found at i:49913178 original size:47 final size:46
Alignment explanation
Indices: 49913088--49913184 Score: 115
Period size: 47 Copynumber: 2.1 Consensus size: 46
49913078 AATATGTATT
* * * *
49913088 TATTATTAAAATATTAATATAAATTTTTCAATAATATATTAAAAATA
1 TATTAATAAAATATTAATATAAATATTTCAATAAAATAAT-AAAATA
* *
49913135 TATTAATAAAATTTTAATATAAATAATTT-ATTAAAATAATAAAATA
1 TATTAATAAAATATTAATATAAAT-ATTTCAATAAAATAATAAAATA
49913181 TATT
1 TATT
49913185 GATTATATTG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
46 10 0.23
47 30 0.70
48 3 0.07
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (46 bp):
TATTAATAAAATATTAATATAAATATTTCAATAAAATAATAAAATA
Found at i:49919474 original size:18 final size:18
Alignment explanation
Indices: 49919451--49919489 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
49919441 AACAAAAATG
*
49919451 AAAACGGTATTAAATGGT
1 AAAACGATATTAAATGGT
49919469 AAAACGATATTAAATGGT
1 AAAACGATATTAAATGGT
49919487 AAA
1 AAA
49919490 TAAACTATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.51, C:0.05, G:0.18, T:0.26
Consensus pattern (18 bp):
AAAACGATATTAAATGGT
Found at i:49920450 original size:20 final size:20
Alignment explanation
Indices: 49920405--49920457 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
49920395 CCTCAAAACG
**
49920405 GTATTGATACCAT-CATAAA
1 GTATTGATACTTTACATAAA
* *
49920424 GTGTTGATACTTTACATAAT
1 GTATTGATACTTTACATAAA
49920444 GTATTGATACTTTA
1 GTATTGATACTTTA
49920458 GAATAAGTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (20 bp):
GTATTGATACTTTACATAAA
Found at i:49920467 original size:20 final size:19
Alignment explanation
Indices: 49920422--49920467 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
49920412 TACCATCATA
* *
49920422 AAGTGTTGATACTTTACAT
1 AAGTATTGATACTTTAAAT
49920441 AATGTATTGATACTTTAGAAT
1 AA-GTATTGATACTTTA-AAT
49920462 AAGTAT
1 AAGTAT
49920468 CATGTTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 17 0.74
21 4 0.17
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (19 bp):
AAGTATTGATACTTTAAAT
Found at i:49923895 original size:27 final size:27
Alignment explanation
Indices: 49923862--49923914 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
49923852 CTTTCAGAGA
49923862 TCGCCACAAAGGTTAGTCTTCCATTAT
1 TCGCCACAAAGGTTAGTCTTCCATTAT
* *
49923889 TCGCCACAAAGGTTATTCTTTCATTA
1 TCGCCACAAAGGTTAGTCTTCCATTA
49923915 GTTACCACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (27 bp):
TCGCCACAAAGGTTAGTCTTCCATTAT
Found at i:49923922 original size:27 final size:27
Alignment explanation
Indices: 49923865--49923922 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
49923855 TCAGAGATCG
*
49923865 CCACAAAGGTTAGTCTTCCATTATTCG
1 CCACAAAGGTTAGTCTTCCATTATTCA
* *
49923892 CCACAAAGGTTATTCTTTCATTAGTT-A
1 CCACAAAGGTTAGTCTTCCATTA-TTCA
49923919 CCAC
1 CCAC
49923923 GGAGTCTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (27 bp):
CCACAAAGGTTAGTCTTCCATTATTCA
Found at i:49926657 original size:19 final size:19
Alignment explanation
Indices: 49926633--49926672 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
49926623 CACATACAAG
49926633 ATTGATGGTAGATGCTATA
1 ATTGATGGTAGATGCTATA
49926652 ATTGATGGTAGATGCTATA
1 ATTGATGGTAGATGCTATA
49926671 AT
1 AT
49926673 GGTATAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.38
Consensus pattern (19 bp):
ATTGATGGTAGATGCTATA
Found at i:49930881 original size:18 final size:18
Alignment explanation
Indices: 49930831--49930882 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
49930821 TGAATAAAGG
*
49930831 TACTGAATAACTGACTGT
1 TACTGAATAACTGATTGT
*
49930849 TACTGAATAATTGATTGT
1 TACTGAATAACTGATTGT
49930867 TACTGAATAACTGATT
1 TACTGAATAACTGATT
49930883 TCTGTTGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TACTGAATAACTGATTGT
Found at i:49930947 original size:20 final size:19
Alignment explanation
Indices: 49930910--49930956 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
49930900 TGTAACTGAA
*
49930910 TGATATTG-ATAAATTGAT
1 TGATATTGAAAAAATTGAT
49930928 TGATATTGAAAAATATTGAT
1 TGATATTGAAAAA-ATTGAT
49930948 TGATATTGA
1 TGATATTGA
49930957 GCTTGGAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.31
19 3 0.12
20 15 0.58
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (19 bp):
TGATATTGAAAAAATTGAT
Found at i:49933114 original size:26 final size:26
Alignment explanation
Indices: 49933085--49933155 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
49933075 CCAATATCGC
* *
49933085 AGCAAAGCTACCAGTAATAGTAACGT
1 AGCAAAGCTACCAGTAACAGTAACAT
** *
49933111 AGCAGGGCTACCAGTAACAGTATCAT
1 AGCAAAGCTACCAGTAACAGTAACAT
* * *
49933137 AGCAAGGCTGCTAGTAACA
1 AGCAAAGCTACCAGTAACA
49933156 AAATAGCTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
AGCAAAGCTACCAGTAACAGTAACAT
Found at i:49933351 original size:22 final size:22
Alignment explanation
Indices: 49933274--49933352 Score: 81
Period size: 22 Copynumber: 3.6 Consensus size: 22
49933264 ATCAATACAA
* *
49933274 AGCCATGATCA-AGATGGCACGG
1 AGCCATAATCAGA-ATGGCACAG
*
49933296 AGCCATAAT-AGGGATGGCACAG
1 AGCCATAATCA-GAATGGCACAG
**
49933318 AGCCATCTTCAGAATGGCACAG
1 AGCCATAATCAGAATGGCACAG
49933340 AGCCATAATCAGA
1 AGCCATAATCAGA
49933353 TCAAGTGGCT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
21 1 0.02
22 44 0.96
23 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.27, T:0.15
Consensus pattern (22 bp):
AGCCATAATCAGAATGGCACAG
Found at i:49933445 original size:43 final size:43
Alignment explanation
Indices: 49933398--49933500 Score: 152
Period size: 43 Copynumber: 2.4 Consensus size: 43
49933388 GTCTCGCGTG
* * *
49933398 ACCCGTGCGACCTTAATAGAATAGTCCATAGTCATCTCGTGCA
1 ACCCGTGCGACCTTAACAGAATAGTCCACAGTCATCTCGTACA
* * *
49933441 ACCCGTGCAACCTTAACAGAATAGTCCACAGTCGTCTCGTACG
1 ACCCGTGCGACCTTAACAGAATAGTCCACAGTCATCTCGTACA
49933484 ACCCGTGCGACCTTAAC
1 ACCCGTGCGACCTTAAC
49933501 TGATCAATAC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.22
Consensus pattern (43 bp):
ACCCGTGCGACCTTAACAGAATAGTCCACAGTCATCTCGTACA
Found at i:49933829 original size:27 final size:27
Alignment explanation
Indices: 49933799--49933916 Score: 141
Period size: 27 Copynumber: 4.4 Consensus size: 27
49933789 TTTACCCTAT
49933799 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTACAAACC
* *
49933826 AGGGGTATTTTTGTAATTTTACAAATC
1 AGGGGTATTTTAGTAATTTTACAAACC
* * * *
49933853 GGGGGTA-TTTCGATAATCTTACAACCC
1 AGGGGTATTTTAG-TAATTTTACAAACC
*
49933880 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTACAAACC
49933907 -GAGGGTATTT
1 AG-GGGTATTT
49933917 CGGTGGTGTT
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.06
27 68 0.88
28 4 0.05
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGGTATTTTAGTAATTTTACAAACC
Found at i:49933858 original size:54 final size:55
Alignment explanation
Indices: 49933800--49933916 Score: 166
Period size: 54 Copynumber: 2.2 Consensus size: 55
49933790 TTACCCTATA
* * *
49933800 GGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTTGTAATTTTACAAATCG
1 GGGGTATTTTAGATAATCTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCG
* *
49933854 GGGGTA-TTTCGATAATCTTACAACCCAGGGGTATTTTGGTAATTTTACAAACCG
1 GGGGTATTTTAGATAATCTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCG
*
49933908 AGGGTATTT
1 GGGGTATTT
49933917 CGGTGGTGTT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
53 4 0.07
54 49 0.89
55 2 0.04
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (55 bp):
GGGGTATTTTAGATAATCTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCG
Found at i:49933917 original size:54 final size:54
Alignment explanation
Indices: 49933812--49933918 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 54
49933802 GGTATTTTAG
* * * *
49933812 TAATTTTACAAACCAGGGGTATTTTTGTAATTTTACAAATCGGGGGTATTTCGA
1 TAATCTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCGAGGGTATTTCGA
*
49933866 TAATCTTACAACCCAGGGGTATTTTGGTAATTTTACAAACCGAGGGTATTTCG
1 TAATCTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCGAGGGTATTTCG
49933919 GTGGTGTTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (54 bp):
TAATCTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCGAGGGTATTTCGA
Found at i:49947741 original size:40 final size:39
Alignment explanation
Indices: 49947664--49947800 Score: 186
Period size: 40 Copynumber: 3.5 Consensus size: 39
49947654 AAACCAAGTA
* * *
49947664 CCTTCGGGATTTAGCCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGATATAG-TAACTCGCACAAATG
49947703 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGA-TATAGTAACTCGCACAAATG
* * *
49947743 CCTTCGGGACTTAGCTCGGATATAGTAACTCGGAAAAATG
1 CCTTCGGGACTTAGC-CCGATATAGTAACTCGCACAAATG
49947783 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
49947801 GTTATCATCC
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
39 20 0.23
40 65 0.74
41 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATG
Found at i:49954293 original size:101 final size:101
Alignment explanation
Indices: 49954184--49954378 Score: 293
Period size: 101 Copynumber: 1.9 Consensus size: 101
49954174 TACGCTCATA
* * *
49954184 GTGCCATAACCCAATTATGGTCTTATCATCAAAATGCCATAGCCCAACTATGGTCTTACATATAG
1 GTGCCATAACCCAATTATAGTATTATCATCAAAATGCCATAGCCCAACTATGGTCTTACATATAA
*
49954249 ATAC-TGCCATGGTCCAACCATGGTCTTACATTTAAG
66 AAACAT-CCATGGTCCAACCATGGTCTTACATTTAAG
* * * * *
49954285 GTGCCATAACCCAGTTATAGTATTTTCATTAAAATTCCATAGCCCAGCTATGGTCTTACATATAA
1 GTGCCATAACCCAATTATAGTATTATCATCAAAATGCCATAGCCCAACTATGGTCTTACATATAA
49954350 AAACATCCATGGTCCAACCATGGTCTTAC
66 AAACATCCATGGTCCAACCATGGTCTTAC
49954379 GTTCAATTCA
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
101 83 0.99
102 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (101 bp):
GTGCCATAACCCAATTATAGTATTATCATCAAAATGCCATAGCCCAACTATGGTCTTACATATAA
AAACATCCATGGTCCAACCATGGTCTTACATTTAAG
Found at i:49954351 original size:33 final size:32
Alignment explanation
Indices: 49954185--49954351 Score: 118
Period size: 33 Copynumber: 5.0 Consensus size: 32
49954175 ACGCTCATAG
* * *
49954185 TGCCATAACCCAATTATGGTCTTATCATCAAAA
1 TGCCATAGCCCAACTATGGTCTTA-CATTAAAA
*
49954218 TGCCATAGCCCAACTATGGTCTTACATATAGATAC
1 TGCCATAGCCCAACTATGGTCTTACAT-TA-A-AA
* * * **
49954253 TGCCATGGTCCAACCATGGTCTTACATTTAAGG
1 TGCCATAGCCCAACTATGGTCTTACA-TTAAAA
* ** * * *
49954286 TGCCATAACCCAGTTATAGTATTTTCATTAAAA
1 TGCCATAGCCCAACTATGGT-CTTACATTAAAA
* *
49954319 TTCCATAGCCCAGCTATGGTCTTACATATAAAA
1 TGCCATAGCCCAACTATGGTCTTACAT-TAAAA
49954352 ACATCCATGG
Statistics
Matches: 102, Mismatches: 26, Indels: 12
0.73 0.19 0.09
Matches are distributed among these distances:
32 8 0.08
33 61 0.60
34 6 0.06
35 26 0.25
36 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.31
Consensus pattern (32 bp):
TGCCATAGCCCAACTATGGTCTTACATTAAAA
Found at i:49955958 original size:20 final size:20
Alignment explanation
Indices: 49955935--49955988 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
49955925 TTCAATTTTA
*
49955935 GTGGCTTGTCCACATTTCTG
1 GTGGCTTGTCCACATTACTG
* * *
49955955 GTGGTTTAT-TAGCATTACTG
1 GTGGCTTGTCCA-CATTACTG
49955975 GTGGCTTGTCCACA
1 GTGGCTTGTCCACA
49955989 AACTGTTGTG
Statistics
Matches: 25, Mismatches: 7, Indels: 4
0.69 0.19 0.11
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.15, C:0.20, G:0.26, T:0.39
Consensus pattern (20 bp):
GTGGCTTGTCCACATTACTG
Found at i:49959159 original size:14 final size:13
Alignment explanation
Indices: 49959124--49959155 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
49959114 TTGTAGAGAG
49959124 AAAATTCTTTCAA
1 AAAATTCTTTCAA
*
49959137 GAAATTCTTTCAA
1 AAAATTCTTTCAA
49959150 AAAATT
1 AAAATT
49959156 TCTTGAGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (13 bp):
AAAATTCTTTCAA
Found at i:49973099 original size:27 final size:27
Alignment explanation
Indices: 49973076--49973183 Score: 153
Period size: 27 Copynumber: 4.0 Consensus size: 27
49973066 CAAAATTATT
49973076 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
49973103 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
49973130 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
49973157 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
49973184 ATTTTGCCCC
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:49973135 original size:54 final size:53
Alignment explanation
Indices: 49973067--49973179 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 53
49973057 CTGGATTTAC
*
49973067 AAAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGT
1 AAAA-TATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGT
* *
49973121 AGAAATATCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGT
1 A-AAATATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGT
49973175 AAAAT
1 AAAAT
49973180 TACCATTTTG
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
53 4 0.07
54 48 0.87
55 3 0.05
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (53 bp):
AAAATATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGT
Found at i:49974035 original size:25 final size:25
Alignment explanation
Indices: 49973990--49974054 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
49973980 CATTCACATT
* * *
49973990 CTGATTGTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
* *
49974015 CTGGTTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
*
49974040 CTGATTCTAATTCTG
1 CTGATTCTGATTCTG
49974055 ATTTTGATTC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.18, C:0.20, G:0.17, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:49974041 original size:19 final size:19
Alignment explanation
Indices: 49974019--49974084 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
49974009 CTGATACTGG
*
49974019 TTCTGATTCTGTCACCTAA
1 TTCTGATTCTGTCACCTGA
* *
49974038 TTCTGATTC--TAATTCTGA
1 TTCTGATTCTGTCA-CCTGA
*
49974056 TTTTGATTCTGTCACCTGA
1 TTCTGATTCTGTCACCTGA
49974075 TTCTGATTCT
1 TTCTGATTCT
49974085 CATTTTGATT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
17 2 0.05
18 11 0.30
19 22 0.59
20 2 0.05
ACGTcount: A:0.18, C:0.21, G:0.12, T:0.48
Consensus pattern (19 bp):
TTCTGATTCTGTCACCTGA
Found at i:49974046 original size:6 final size:6
Alignment explanation
Indices: 49973987--49974105 Score: 57
Period size: 6 Copynumber: 19.3 Consensus size: 6
49973977 TTGCATTCAC
* * * * *
49973987 ATTCTG ATTGTG ATTCTG -TTACCTG ATACTG GTTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
49974037 ATTCTG ATTCTA ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
49974086 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
49974106 AATATTTCTT
Statistics
Matches: 82, Mismatches: 20, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
5 5 0.06
6 65 0.79
7 9 0.11
8 3 0.04
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:49974063 original size:37 final size:37
Alignment explanation
Indices: 49974022--49974094 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
49974012 ATACTGGTTC
49974022 TGATTCTGTCACCTAATTCTGATTCTAATTCTGATTT
1 TGATTCTGTCACCTAATTCTGATTCTAATTCTGATTT
* * *
49974059 TGATTCTGTCACCTGATTCTGATTCTCATTTTGATT
1 TGATTCTGTCACCTAATTCTGATTCTAATTCTGATT
49974095 CTAGTTCTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.49
Consensus pattern (37 bp):
TGATTCTGTCACCTAATTCTGATTCTAATTCTGATTT
Found at i:49974103 original size:37 final size:37
Alignment explanation
Indices: 49974023--49974103 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
49974013 TACTGGTTCT
*
49974023 GATTCTGTCACCTAATTCTGATTCTAATTCTGATTTT
1 GATTCTGTCACCTAATTCTGATTCTAATTCTGATTTA
* * *
49974060 GATTCTGTCACCTGATTCTGATTCTCATTTTGATTCTA
1 GATTCTGTCACCTAATTCTGATTCTAATTCTGATT-TA
49974098 G-TTCTG
1 GATTCTG
49974104 ATAATATTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 37 0.95
38 2 0.05
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.48
Consensus pattern (37 bp):
GATTCTGTCACCTAATTCTGATTCTAATTCTGATTTA
Found at i:49979782 original size:40 final size:40
Alignment explanation
Indices: 49979727--49979937 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
49979717 ATTTGAATGA
*
49979727 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
49979767 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
49979807 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
49979847 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
49979887 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
49979927 TATCC-GGCTAA
1 TATCCGGGCTAA
49979938 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:49988113 original size:40 final size:40
Alignment explanation
Indices: 49987883--49988114 Score: 317
Period size: 40 Copynumber: 5.8 Consensus size: 40
49987873 CATTTGAATG
* * *
49987883 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * *
49987923 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
49987963 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
49988003 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
49988043 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
49988083 ATACCCGGG-TCAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCT-AAGACCCGAAGGCATTTGTGC
49988115 TTGTGGTTAT
Statistics
Matches: 182, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 1 0.01
40 178 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:50000607 original size:23 final size:23
Alignment explanation
Indices: 50000425--50000618 Score: 237
Period size: 23 Copynumber: 8.4 Consensus size: 23
50000415 AGCTTATTAT
* *
50000425 TTTCAGGTCGATAGAGCTTGCCG
1 TTTCAGCTCGATAGAGCTTACCG
* * *
50000448 TTTTAGCTTGATAGAGCTTGCCG
1 TTTCAGCTCGATAGAGCTTACCG
* *
50000471 TTTTAGCTCGATAGAGCTTACCA
1 TTTCAGCTCGATAGAGCTTACCG
*
50000494 TTTCAGCTCGATAAAGCTTACCG
1 TTTCAGCTCGATAGAGCTTACCG
* *
50000517 TTTTAGCTCGATAAAGCTTACCG
1 TTTCAGCTCGATAGAGCTTACCG
50000540 TTTCAGCTCGATAGAGCTTACCG
1 TTTCAGCTCGATAGAGCTTACCG
* * *
50000563 TTTTAGCTTGATAGAGCTTACTG
1 TTTCAGCTCGATAGAGCTTACCG
*
50000586 TTTCAGCTC-ATTAGAGCTTACTG
1 TTTCAGCTCGA-TAGAGCTTACCG
50000609 TTATCAGCTC
1 TT-TCAGCTC
50000619 AGGAGGAGCT
Statistics
Matches: 152, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
22 1 0.01
23 144 0.95
24 7 0.05
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (23 bp):
TTTCAGCTCGATAGAGCTTACCG
Found at i:50023462 original size:40 final size:40
Alignment explanation
Indices: 50023411--50023561 Score: 248
Period size: 40 Copynumber: 3.8 Consensus size: 40
50023401 CATTTGAATG
*
50023411 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGAT
50023451 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGAT
* *
50023491 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGAT
* * *
50023531 ATACCCGGGTTAAGACCCGAAGGCAATTGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTG
50023562 TTTGGTTATA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGAT
Found at i:50031639 original size:40 final size:40
Alignment explanation
Indices: 50031588--50031739 Score: 259
Period size: 40 Copynumber: 3.8 Consensus size: 40
50031578 CATTTGAATG
*
50031588 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
50031628 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
50031668 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
50031708 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
50031740 TTGTGGTTAT
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:50031751 original size:80 final size:80
Alignment explanation
Indices: 50031588--50031759 Score: 256
Period size: 80 Copynumber: 2.2 Consensus size: 80
50031578 CATTTGAATG
* *
50031588 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCA
* *
50031653 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
50031668 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCA
** *
50031733 ATTGTGCTTGTGGTT
66 ATTGTGCGAGTGGAT
50031748 ATATCC-GGCTAA
1 ATATCCGGGCTAA
50031760 ATTCCGAAGA
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 6 0.07
80 77 0.93
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:50033902 original size:6 final size:6
Alignment explanation
Indices: 50033891--50034003 Score: 142
Period size: 6 Copynumber: 18.8 Consensus size: 6
50033881 AACCAAAATG
* *
50033891 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AAAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* *
50033939 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
50033987 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
50034004 TAGGTGACAA
Statistics
Matches: 93, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
5 6 0.06
6 82 0.88
7 5 0.05
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:50033906 original size:30 final size:29
Alignment explanation
Indices: 50033870--50034028 Score: 147
Period size: 30 Copynumber: 5.1 Consensus size: 29
50033860 AAGAAACATT
* * *
50033870 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
50033900 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
*
50033930 ATCAAAATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
50033960 ATCAGAATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAG----A--ATT-GTAACAGAATCAGAATCAGA
* *
50033996 ATCAGAATTAGGTGACAAAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
50034027 AT
1 AT
50034029 GTGAATGCAA
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
30 56 0.51
31 23 0.21
32 1 0.01
34 1 0.01
36 29 0.26
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:50033931 original size:36 final size:36
Alignment explanation
Indices: 50033891--50034003 Score: 166
Period size: 36 Copynumber: 3.3 Consensus size: 36
50033881 AACCAAAATG
*
50033891 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATCAGAATC
50033927 AGAATC---A--A-AATTAGTAACAGAATCAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATCAGAATC
*
50033957 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATCAGAATC
50033993 AGAATCAGAAT
1 AGAATCAGAAT
50034004 TAGGTGACAA
Statistics
Matches: 69, Mismatches: 2, Indels: 12
0.83 0.02 0.14
Matches are distributed among these distances:
30 27 0.39
31 1 0.01
33 2 0.03
35 1 0.01
36 38 0.55
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.19
Consensus pattern (36 bp):
AGAATCAGAATCAGAATTAGTAACAGAATCAGAATC
Found at i:50034216 original size:27 final size:27
Alignment explanation
Indices: 50034146--50034227 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
50034136 AACATGGCCG
* *
50034146 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
50034172 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
*
50034199 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATAATGTGGCAGAGCCA
50034226 CC
1 CC
50034228 TAACAGAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 39 0.83
28 3 0.06
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:50034595 original size:27 final size:26
Alignment explanation
Indices: 50034530--50034612 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
50034520 TCGATCGGTC
* *
50034530 AACAGATATTGTGATAGAGTCACCAG
1 AACAGATATTGTGGTAGAGCCACCAG
*
50034556 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGTAGAGCCACCAG
* *
50034583 AACAGATATTTGTGGTATAGCAACCAG
1 AACAGATA-TTGTGGTAGAGCCACCAG
50034610 AAC
1 AAC
50034613 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGGTAGAGCCACCAG
Found at i:50034841 original size:27 final size:27
Alignment explanation
Indices: 50034811--50035005 Score: 221
Period size: 27 Copynumber: 7.3 Consensus size: 27
50034801 GGGGCAAAAT
* * *
50034811 GGTAATTTTACCCTACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
50034838 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50034865 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50034892 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
50034919 GCTAATTCTATCGTATAA-GGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50034945 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50034972 GGAAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50034999 AGTAATT
1 GGTAATT
50035006 TCACAATCAA
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 20 0.14
27 122 0.86
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:50035005 original size:80 final size:81
Alignment explanation
Indices: 50034813--50035005 Score: 221
Period size: 80 Copynumber: 2.4 Consensus size: 81
50034803 GGCAAAATGG
* ** * * * *
50034813 TAATTTTACCCTACAAAGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
50034878 TACAAGGGTATTTCGA
66 TACAAGGGTATTTCGA
* * * *
50034894 TAATTCTACCCTACAGGGGTATTT-TGCTAATTCTATCGTATAA-GGTATTTCAGTAATTCTACC
1 TAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACC
* *
50034957 CTATAGGGGTATTTCGGA
65 CTACAAGGGTATTTC-GA
*
50034975 -AATTCTACCTTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCAGTAATT
50035006 TCACAATCAA
Statistics
Matches: 95, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 59 0.62
81 36 0.38
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
TACAAGGGTATTTCGA
Found at i:50035126 original size:27 final size:27
Alignment explanation
Indices: 50035010--50035126 Score: 103
Period size: 27 Copynumber: 4.3 Consensus size: 27
50035000 GTAATTTCAC
* * *
50035010 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
50035037 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
50035064 AA-CTGAGGAT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTTTGTA
** **
50035091 AATTAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
50035118 AATCGAGGG
1 AATCGAGGG
50035127 CATTTCAGTA
Statistics
Matches: 69, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
26 5 0.07
27 60 0.87
28 4 0.06
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:50036188 original size:15 final size:13
Alignment explanation
Indices: 50036153--50036186 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
50036143 ACTAAAGCAG
50036153 ACACATATTTATC
1 ACACATATTTATC
50036166 ACACATATTTATC
1 ACACATATTTATC
50036179 ACACATAT
1 ACACATAT
50036187 ATACAATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (13 bp):
ACACATATTTATC
Found at i:50037140 original size:6 final size:6
Alignment explanation
Indices: 50037125--50037262 Score: 133
Period size: 6 Copynumber: 22.8 Consensus size: 6
50037115 AACCAAAATG
* *
50037125 AGAATC AGAATT AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
50037173 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
50037221 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT
50037263 GTGAATGCAA
Statistics
Matches: 109, Mismatches: 12, Indels: 22
0.76 0.08 0.15
Matches are distributed among these distances:
5 8 0.07
6 93 0.85
7 6 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:50037159 original size:30 final size:30
Alignment explanation
Indices: 50037125--50037262 Score: 161
Period size: 30 Copynumber: 4.4 Consensus size: 30
50037115 AACCAAAATG
*
50037125 AGAATCAGAATTAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
*
50037155 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATCAGTAACAGAATC
50037185 AGAATCAGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATC------AGTAACAGAATC
* *
50037221 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCA-GTAACAGAATC
50037252 AGAATCAGAAT
1 AGAATCAGAAT
50037263 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 5, Indels: 17
0.81 0.04 0.15
Matches are distributed among these distances:
29 1 0.01
30 42 0.45
31 22 0.23
36 29 0.31
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGTAACAGAATC
Found at i:50037165 original size:36 final size:35
Alignment explanation
Indices: 50037125--50037262 Score: 168
Period size: 36 Copynumber: 4.1 Consensus size: 35
50037115 AACCAAAATG
*
50037125 AGAATCAGAATTAGAATCAGTAACAGAATCAGAATC
1 AGAATCAGAATTAG-ATTAGTAACAGAATCAGAATC
50037161 AGAATC--AA-T--ATTAGTAACAGAATCAGAATC
1 AGAATCAGAATTAGATTAGTAACAGAATCAGAATC
*
50037191 AGAATCAGAATCAGTATTAGTAACAGAATCAGAATC
1 AGAATCAGAATTAG-ATTAGTAACAGAATCAGAATC
*
50037227 AGAATCAGAATTAG----GTGACAGAATCAGAATC
1 AGAATCAGAATTAGATTAGTAACAGAATCAGAATC
50037258 AGAAT
1 AGAAT
50037263 GTGAATGCAA
Statistics
Matches: 92, Mismatches: 4, Indels: 17
0.81 0.04 0.15
Matches are distributed among these distances:
30 26 0.28
31 21 0.23
32 2 0.02
33 1 0.01
34 2 0.02
36 40 0.43
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (35 bp):
AGAATCAGAATTAGATTAGTAACAGAATCAGAATC
Found at i:50037450 original size:27 final size:27
Alignment explanation
Indices: 50037380--50037461 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
50037370 AGCATGGCTG
* *
50037380 CCAGAAT-AGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
50037406 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
*
50037433 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATAATGTGGCAGAGCCA
50037460 CC
1 CC
50037462 TAACAGAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
25 2 0.04
26 4 0.09
27 38 0.81
28 3 0.06
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:50037666 original size:22 final size:22
Alignment explanation
Indices: 50037618--50037676 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
50037608 GTAAATACGT
*
50037618 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
50037640 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
50037662 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
50037677 TAATAACGAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:50037803 original size:27 final size:26
Alignment explanation
Indices: 50037764--50037846 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
50037754 TCGATCGGTC
* *
50037764 AACAGATATTGTGATAGAGTCACCAG
1 AACAGATATTGTGACAGAGCCACCAG
*
50037790 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGACAGAGCCACCAG
*
50037817 AACAGATATTTGTTG-CATAGCCACCAG
1 AACAGATA-TTG-TGACAGAGCCACCAG
50037844 AAC
1 AAC
50037847 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 8 0.16
27 40 0.80
28 2 0.04
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAG
Found at i:50038075 original size:27 final size:27
Alignment explanation
Indices: 50038045--50038232 Score: 214
Period size: 27 Copynumber: 7.0 Consensus size: 27
50038035 GGGGCAAAAT
* * * *
50038045 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50038072 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50038099 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50038126 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50038153 GCTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
50038180 AGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
50038207 GGAAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
50038233 TAGTAATTTC
Statistics
Matches: 136, Mismatches: 25, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:50038111 original size:54 final size:54
Alignment explanation
Indices: 50038045--50038232 Score: 241
Period size: 54 Copynumber: 3.5 Consensus size: 54
50038035 GGGGCAAAAT
* * * *
50038045 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
50038099 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * * *
50038153 GCTAATTCTATCCTATAAGGGTATTTCAGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
50038207 GGAAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
50038233 TAGTAATTTC
Statistics
Matches: 113, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 113 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:50038361 original size:27 final size:27
Alignment explanation
Indices: 50038249--50038347 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
50038239 TTTCACCATT
*
50038249 AAGGGTAAAACGGTAATTCTGTAAATC
1 AAGGGTAAAACGATAATTCTGTAAATC
* *
50038276 AAGGGTAAAATGATAATTTTGTAAA-C
1 AAGGGTAAAACGATAATTCTGTAAATC
* *
50038302 TGAGGGT-AAACTAGTAATTCTGTAAATC
1 -AAGGGTAAAACGA-TAATTCTGTAAATC
50038330 AAGGGTAAAACGATAATT
1 AAGGGTAAAACGATAATT
50038348 TTACAAATCG
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
26 5 0.08
27 48 0.81
28 6 0.10
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.28
Consensus pattern (27 bp):
AAGGGTAAAACGATAATTCTGTAAATC
Found at i:50038374 original size:54 final size:54
Alignment explanation
Indices: 50038261--50038363 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
50038251 GGGTAAAACG
* ** *
50038261 GTAATTCTGTAAATCAAGGGTAAAATGATAATTTTGTAAACTGAGGGTAAACTA
1 GTAATTCTGTAAATCAAGGGTAAAACGATAATTTTACAAACTGAGGGCAAACTA
50038315 GTAATTCTGTAAATCAAGGGTAAAACGATAATTTTACAAA-TCGAGGGCA
1 GTAATTCTGTAAATCAAGGGTAAAACGATAATTTTACAAACT-GAGGGCA
50038364 TTTCAGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 1 0.02
54 43 0.98
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCAAGGGTAAAACGATAATTTTACAAACTGAGGGCAAACTA
Found at i:50051955 original size:27 final size:27
Alignment explanation
Indices: 50051925--50052007 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
50051915 CGAATGGCCA
50051925 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
* * *
50051952 ATGTGAT-AAGGCCG-AA-TG---GCCA-
1 ATGTGATGAATG-TGAAAGTGTATG-TAT
50051974 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
50052001 ATGTGAT
1 ATGTGAT
50052008 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 9 0.22
23 6 0.15
24 2 0.05
25 2 0.05
26 6 0.15
27 16 0.39
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.33
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATGTAT
Found at i:50052104 original size:47 final size:49
Alignment explanation
Indices: 50051876--50052091 Score: 339
Period size: 49 Copynumber: 4.4 Consensus size: 49
50051866 TTAGGATTTT
* *
50051876 ATGTGATGAATGTGAGAGTGTATGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
50051925 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
50051974 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
* * * *
50052023 ATGTGATGATTGT-AAA-AGTATATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
*
50052070 ATGTGATGGAA-GTGGAAGTGTA
1 ATGTGAT-GAATGTGAAAGTGTA
50052092 GAACTGTGAT
Statistics
Matches: 155, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
47 37 0.24
48 7 0.05
49 111 0.72
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
Found at i:50055919 original size:46 final size:45
Alignment explanation
Indices: 50055773--50055994 Score: 216
Period size: 46 Copynumber: 4.8 Consensus size: 45
50055763 ATTCGTGTGT
* * * *
50055773 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGG-TCATATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTC-GA-GACGA
* * * *
50055819 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATTGGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGACGA
*
50055867 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGACG-A
*
50055914 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGACGA
* *
50055959 TAG-TCAATGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCG
50055995 ACTTAAGATA
Statistics
Matches: 151, Mismatches: 14, Indels: 20
0.82 0.08 0.11
Matches are distributed among these distances:
45 4 0.03
46 75 0.50
47 42 0.28
48 28 0.19
49 1 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGACGA
Found at i:50056017 original size:47 final size:45
Alignment explanation
Indices: 50055772--50056035 Score: 185
Period size: 46 Copynumber: 5.7 Consensus size: 45
50055762 CATTCGTGTG
* * * **
50055772 TGAGCTAGTGTAAGACATGTCTGGGACATGCATTGGTCATATTATGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTTAAGAT-A
* * * *
50055819 -GAGCCAGTGTAAGACCATGTCTGGGATATGGCATTGGCATTGAGACGA
1 TGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTAAGA-TA
* * ** **
50055867 -GGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTTAAGATA
* *
50055912 TAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-TACGAGATGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTA--AGAT-A
* * *
50055959 T-AGTCAATGTAAGACCATGTCTGGGACATGGCATCGACTTAAGATA
1 TGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTAAGATA
* *
50056005 TGAGCCAGTGTAAGACCGTGTCTAGGACATG
1 TGAGCCAGTGTAAGA-CATGTCTGGGACATG
50056036 TCATTGGCAC
Statistics
Matches: 176, Mismatches: 28, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
45 1 0.01
46 73 0.41
47 71 0.40
48 29 0.16
49 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (45 bp):
TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTTAAGATA
Found at i:50056027 original size:140 final size:140
Alignment explanation
Indices: 50055774--50056035 Score: 325
Period size: 140 Copynumber: 1.9 Consensus size: 140
50055764 TTCGTGTGTG
* ** *
50055774 AGCTAGTGTAAGACATGTCTGGGACATGCATTGGTCATATTATGAGAGCCAGTGTAAGACCATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCATAAGATGAGAGCCAATGTAAGACCATGT
* * * * * * *
50055839 CTGGGATATGGCATTGGCATTGAGACGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
66 CTGGGACATGGCATCGACATTAAGACGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCC
50055904 TCGAGACGTA
131 TCGAGACGTA
* *
50055914 AGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-TACGAGATGATAGTCAATGTAAGACCAT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCATA--AGATGAGAGCCAATGTAAGACCAT
* *
50055977 GTCTGGGACATGGCATCGAC-TTAAGA-TATGAGCCAGTGTAAGACCGTGTCTAGGACATG
64 GTCTGGGACATGGCATCGACATTAAGACGA-GAGCCAGTGTAAGA-CATGTCTAGGACATG
50056036 TCATTGGCAC
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
138 3 0.03
139 18 0.17
140 82 0.80
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (140 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCATAAGATGAGAGCCAATGTAAGACCATGT
CTGGGACATGGCATCGACATTAAGACGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCC
TCGAGACGTA
Found at i:50060161 original size:21 final size:21
Alignment explanation
Indices: 50060137--50060194 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
50060127 ATGTGGTCCA
*
50060137 AGGACACACCAGTGTGATCGT
1 AGGACACACCAGTGTGACCGT
*
50060158 AGGACACGCCAGTGTGACCGT
1 AGGACACACCAGTGTGACCGT
*
50060179 AGGACACACCCGTGTG
1 AGGACACACCAGTGTG
50060195 CTAGGCTGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.26, C:0.28, G:0.31, T:0.16
Consensus pattern (21 bp):
AGGACACACCAGTGTGACCGT
Found at i:50085302 original size:55 final size:55
Alignment explanation
Indices: 50085216--50085323 Score: 153
Period size: 55 Copynumber: 2.0 Consensus size: 55
50085206 ACAGACGTGT
* *
50085216 GACACGCCCGTGTGGAAGAACCATGGGCGAACCTATTAAAATAGCACGGGCGTTC
1 GACACGCCCGTGTGGAACAACCATGGGCGAACCTATTAAAATAACACGGGCGTTC
* * * * *
50085271 GACACGCCCGTGTGGAACACCCGTGGTCGAACCTGTTAAATTAACACGGGCGT
1 GACACGCCCGTGTGGAACAACCATGGGCGAACCTATTAAAATAACACGGGCGT
50085324 GGGGCTTGCA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.27, C:0.27, G:0.29, T:0.18
Consensus pattern (55 bp):
GACACGCCCGTGTGGAACAACCATGGGCGAACCTATTAAAATAACACGGGCGTTC
Found at i:50101561 original size:7 final size:7
Alignment explanation
Indices: 50101549--50101576 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
50101539 GCCGAAGCCT
50101549 TTTCATA
1 TTTCATA
50101556 TTTCATA
1 TTTCATA
50101563 TTTCATA
1 TTTCATA
50101570 TTTCATA
1 TTTCATA
50101577 ACACTGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:50101600 original size:31 final size:31
Alignment explanation
Indices: 50101562--50101623 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
50101552 CATATTTCAT
50101562 ATTTCATATTTCATAACACTGGGCCGAAGCC
1 ATTTCATATTTCATAACACTGGGCCGAAGCC
** *
50101593 ATTTCATATTTCATATTATTGGGCCGAAGCC
1 ATTTCATATTTCATAACACTGGGCCGAAGCC
50101624 GTCACTGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (31 bp):
ATTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:50101905 original size:26 final size:25
Alignment explanation
Indices: 50101834--50101917 Score: 118
Period size: 26 Copynumber: 3.4 Consensus size: 25
50101824 CTAGAGGCCT
*
50101834 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
50101858 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
50101883 AGCCCTTTTCGGTAAACTGGGGCAAA
1 AGCCCTTTT-GATAAACTGGGGCAAA
50101909 AGCCCTTTT
1 AGCCCTTTT
50101918 TGCACTTCCT
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
23 7 0.13
24 13 0.24
25 11 0.20
26 24 0.44
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:50105174 original size:21 final size:21
Alignment explanation
Indices: 50105150--50105205 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
50105140 AACAGTGGTG
*
50105150 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
50105171 GCGGTGAGATTAGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
50105192 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
50105206 AACAATGGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.09, G:0.34, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:50109353 original size:31 final size:32
Alignment explanation
Indices: 50109305--50109376 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
50109295 GATATTTTCA
*
50109305 TATTTTA-TAATTATTTAATTAGATA-AATAT
1 TATTTTATTAATTATTTAATAAGATATAATAT
**
50109335 TATTTTATTAA-TATTTTAATAAGATATTTTAT
1 TATTTTATTAATTA-TTTAATAAGATATAATAT
50109367 TATTTTATTA
1 TATTTTATTA
50109377 GTATATAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 9 0.25
31 14 0.39
32 13 0.36
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (32 bp):
TATTTTATTAATTATTTAATAAGATATAATAT
Found at i:50111225 original size:46 final size:46
Alignment explanation
Indices: 50111166--50111383 Score: 319
Period size: 46 Copynumber: 4.7 Consensus size: 46
50111156 ATGAAATGTG
* *
50111166 TAAGACCATGGTTGAAAGATACCATGGTAACATGACGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* *
50111212 TAAGACCATGGTTGAAAGATACCATGGCAGCATGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * *
50111258 TAAGACCATGGTTGAAAGGTACCATGGCAACGTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* *
50111304 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * * *
50111350 TAAGACCATAGTTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
50111384 TCAAAGGTAA
Statistics
Matches: 156, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
Found at i:50113403 original size:23 final size:23
Alignment explanation
Indices: 50113375--50113421 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
50113365 ATTAATTTTT
50113375 CCTGATCTTTCAGTAAAGGCCGC
1 CCTGATCTTTCAGTAAAGGCCGC
50113398 CCTGATCTTTCAGTAAAGGCCGC
1 CCTGATCTTTCAGTAAAGGCCGC
50113421 C
1 C
50113422 AGCTTATGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (23 bp):
CCTGATCTTTCAGTAAAGGCCGC
Found at i:50115321 original size:39 final size:38
Alignment explanation
Indices: 50115235--50115429 Score: 228
Period size: 39 Copynumber: 5.0 Consensus size: 38
50115225 CAAATCCAAT
* * * *
50115235 CACCACCACAAAGCATGCAGGACTTTAAGCCTGGATATAA
1 CACCAGCACAAAGCCTTCAGGAC-TT-AGCCCGGATATAA
* * *
50115275 TACCAGCACAAAGCCTACGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCCTTCAGGAC-TTAGCCCGGATATAA
* *
50115314 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCAC-AAAGCCTTCAGGACTTAGCCCGGATATAA
50115353 CACCAGCACAAATGCCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACAAA-GCCTTCAGGACTTAGCCCGGATATAA
* * *
50115392 CACCAGTACAAACGCCTTCAGGAATTAGCCCAGATATA
1 CACCAGCACAAA-GCCTTCAGGACTTAGCCCGGATATA
50115430 TATCTCACAC
Statistics
Matches: 138, Mismatches: 15, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
38 2 0.01
39 103 0.75
40 33 0.24
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.18
Consensus pattern (38 bp):
CACCAGCACAAAGCCTTCAGGACTTAGCCCGGATATAA
Found at i:50120551 original size:53 final size:53
Alignment explanation
Indices: 50120472--50120577 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 53
50120462 TTAAATTTTC
* ** *
50120472 CCATATGATGTCATAACTTACTAGTTACAGTCTTACACGATATGGTCTCCTTT
1 CCATATGATGCCATAACCCACAAGTTACAGTCTTACACGATATGGTCTCCTTT
** * *
50120525 CCATATGATGCCATAACCCACAAGTTATGGTCTTACACGATATGTTCTTCTTT
1 CCATATGATGCCATAACCCACAAGTTACAGTCTTACACGATATGGTCTCCTTT
50120578 AGTGTCACGA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (53 bp):
CCATATGATGCCATAACCCACAAGTTACAGTCTTACACGATATGGTCTCCTTT
Found at i:50121203 original size:27 final size:27
Alignment explanation
Indices: 50121173--50121228 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
50121163 AAAACCAGTT
**
50121173 CACATACATTTTTACCATCATCACAAG
1 CACATACAAATTTACCATCATCACAAG
50121200 CACATACAAATTTACCATCATCACAAG
1 CACATACAAATTTACCATCATCACAAG
50121227 CA
1 CA
50121229 TAGACAAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.30, G:0.04, T:0.25
Consensus pattern (27 bp):
CACATACAAATTTACCATCATCACAAG
Found at i:50121235 original size:27 final size:27
Alignment explanation
Indices: 50121183--50121236 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
50121173 CACATACATT
*
50121183 TTTACCATCATCACAAGCACATACAAA
1 TTTACCATCATCACAAGCACAGACAAA
*
50121210 TTTACCATCATCACAAGCATAGACAAA
1 TTTACCATCATCACAAGCACAGACAAA
50121237 CCCCATACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.44, C:0.28, G:0.06, T:0.22
Consensus pattern (27 bp):
TTTACCATCATCACAAGCACAGACAAA
Found at i:50124736 original size:55 final size:56
Alignment explanation
Indices: 50124676--50124796 Score: 190
Period size: 55 Copynumber: 2.2 Consensus size: 56
50124666 TTAAGTATAC
**
50124676 ATATTTTTTAAAATTTATTTCCAATTTGTTAGGAAATATTTATTTTGAT-TTTTTA
1 ATATTTTTTAAAATTTATTTCCAATTTGTTAAAAAATATTTATTTTGATCTTTTTA
**
50124731 ATATTTTTTAAAATTTATTTTTAATTTGTTAAAAAATATTTATTTTGATCTTTTTA
1 ATATTTTTTAAAATTTATTTCCAATTTGTTAAAAAATATTTATTTTGATCTTTTTA
*
50124787 GTATTTTTTA
1 ATATTTTTTA
50124797 TGTATTATAT
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
55 45 0.75
56 15 0.25
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.60
Consensus pattern (56 bp):
ATATTTTTTAAAATTTATTTCCAATTTGTTAAAAAATATTTATTTTGATCTTTTTA
Found at i:50133610 original size:43 final size:44
Alignment explanation
Indices: 50133552--50133702 Score: 191
Period size: 43 Copynumber: 3.5 Consensus size: 44
50133542 GTTTACCGAG
* *
50133552 ATGTAATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATAGTAT
*
50133596 -TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATAGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATAGTAT
* * * * * *
50133638 ATATGATTTCGTGTAAGACCATGTTTGGGACATTGACATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATAGTAT
*
50133681 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
50133703 ATTTAGGATA
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
42 1 0.01
43 92 0.99
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATAGTAT
Found at i:50137514 original size:23 final size:23
Alignment explanation
Indices: 50137487--50137530 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
50137477 TAAGAGAATA
50137487 TAAAATAA-AAAAAAGAAAAAAGT
1 TAAAA-AACAAAAAAGAAAAAAGT
*
50137510 TAAAAAACATAAAAGAAAAAA
1 TAAAAAACAAAAAAGAAAAAA
50137531 ATTTAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.80, C:0.02, G:0.07, T:0.11
Consensus pattern (23 bp):
TAAAAAACAAAAAAGAAAAAAGT
Found at i:50144227 original size:58 final size:58
Alignment explanation
Indices: 50144162--50144278 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
50144152 ACGTGGTGAA
50144162 TAAATAATGTTCCTACCAAACGTAGCATAAAAGAAATAGACGAAAGCAAGGTTGCATG
1 TAAATAATGTTCCTACCAAACGTAGCATAAAAGAAATAGACGAAAGCAAGGTTGCATG
50144220 TAAATAATGTTCCTACCAAACGTAGCATAAAAGAAATAGACGAAAGCAAGGTTGCATG
1 TAAATAATGTTCCTACCAAACGTAGCATAAAAGAAATAGACGAAAGCAAGGTTGCATG
50144278 T
1 T
50144279 CAGCCACCTT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.21
Consensus pattern (58 bp):
TAAATAATGTTCCTACCAAACGTAGCATAAAAGAAATAGACGAAAGCAAGGTTGCATG
Found at i:50150329 original size:47 final size:47
Alignment explanation
Indices: 50150277--50150637 Score: 517
Period size: 47 Copynumber: 7.6 Consensus size: 47
50150267 GATAATTGTG
* * *
50150277 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50150324 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50150371 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGTGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAA--TGGCCGATGTGATGA
50150422 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50150471 ATGTGAAAGTGTATATATGTGATGAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50150518 ATGTGAAAGTGTATATATGTTATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
50150565 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
50150612 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
50150638 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 18, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
46 2 0.01
47 191 0.66
48 2 0.01
49 46 0.16
51 49 0.17
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50150509 original size:147 final size:143
Alignment explanation
Indices: 50150277--50150637 Score: 525
Period size: 147 Copynumber: 2.5 Consensus size: 143
50150267 GATAATTGTG
*
50150277 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
50150340 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCGAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
50150405 TGTGGCCGATGTGATGA
129 --TGGCCGATGTGATGA
50150422 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
50150487 ATGTGATGAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTTATGAGGCCTAATG
66 ATGTGATAAGGCCGAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
50150552 GCCGATGTGATGA
131 GCCGATGTGATGA
* * * * * *
50150565 ATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 ATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
50150627 AATGTGATAAG
65 TATGTGATAAG
50150638 TCCCGAAGGG
Statistics
Matches: 199, Mismatches: 14, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
140 2 0.01
141 51 0.26
143 26 0.13
145 24 0.12
146 2 0.01
147 94 0.47
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:50150572 original size:194 final size:188
Alignment explanation
Indices: 50150277--50150637 Score: 535
Period size: 194 Copynumber: 1.9 Consensus size: 188
50150267 GATAATTGTG
* * *
50150277 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
50150342 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG-GCCTAAT
66 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA-AAGAGCC-AA-
* *
50150406 GTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
126 GTGGCCAACGTGATGAATGTGAAAGTGTATA-A-ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50150471 ATGTGAAAGTGTATATATGTGATGAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
50150536 GTTATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGAGCCGAGTGGC
66 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAAAGAGCCAAGTGGC
*
50150601 CAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
131 CAACGTGATGAATGTGAAAGTGTATAAATGTGATAAG
50150638 TCCCGAAGGG
Statistics
Matches: 153, Mismatches: 13, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
188 10 0.07
189 1 0.01
190 28 0.18
191 3 0.02
192 14 0.09
194 97 0.63
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (188 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAAAGAGCCAAGTGGC
CAACGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50156382 original size:20 final size:20
Alignment explanation
Indices: 50156359--50156408 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
50156349 TACACTTCAA
50156359 TGTCCTTGTTCGCACTACGG
1 TGTCCTTGTTCGCACTACGG
* * *
50156379 TGTCCCTGTTTGCACTTCGG
1 TGTCCTTGTTCGCACTACGG
*
50156399 TGCCCTTGTT
1 TGTCCTTGTT
50156409 ATACATCTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.06, C:0.30, G:0.24, T:0.40
Consensus pattern (20 bp):
TGTCCTTGTTCGCACTACGG
Found at i:50157432 original size:20 final size:20
Alignment explanation
Indices: 50157407--50157445 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50157397 ATCGATTTTT
*
50157407 AATTAAGTATCGATACCATA
1 AATTAAGTATCAATACCATA
*
50157427 AATTAATTATCAATACCAT
1 AATTAAGTATCAATACCAT
50157446 TATTTTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.33
Consensus pattern (20 bp):
AATTAAGTATCAATACCATA
Found at i:50158707 original size:19 final size:19
Alignment explanation
Indices: 50158675--50158734 Score: 86
Period size: 19 Copynumber: 3.2 Consensus size: 19
50158665 ATATGAGTTT
50158675 ATGCACTT-ATGTGCTAGG
1 ATGCACTTCATGTGCTAGG
50158693 ATGCACTTCATGTGCTAGG
1 ATGCACTTCATGTGCTAGG
* * *
50158712 ATGCATTTCATTTGCTAAG
1 ATGCACTTCATGTGCTAGG
50158731 ATGC
1 ATGC
50158735 GTTTTATGCT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
18 8 0.21
19 30 0.79
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.35
Consensus pattern (19 bp):
ATGCACTTCATGTGCTAGG
Found at i:50161504 original size:24 final size:23
Alignment explanation
Indices: 50161467--50161511 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
50161457 AACCCTTTTC
*
50161467 CTCTCAGCTCCTTATGTCTCCTT
1 CTCTCACCTCCTTATGTCTCCTT
*
50161490 CTCTCACCTTCCTTATTTCTCC
1 CTCTCACC-TCCTTATGTCTCC
50161512 ACATAGGAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.09, C:0.42, G:0.04, T:0.44
Consensus pattern (23 bp):
CTCTCACCTCCTTATGTCTCCTT
Found at i:50162828 original size:43 final size:42
Alignment explanation
Indices: 50162731--50162850 Score: 170
Period size: 43 Copynumber: 2.8 Consensus size: 42
50162721 CGGGTTACTA
* *
50162731 AGATTACGTGTAAGACCATATCTGGGATATGGCATCTATATG
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCAATACG
* *
50162773 AGACTT-TGTGTAAGACCATAGCTGGGATATTGGCATCAATACG
1 AGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCAATACG
*
50162816 AGATTACATGTAAGACCATATCTGGGATATGGCAT
1 AGATTACGTGTAAGACCATATCTGGGATATGGCAT
50162851 TGGTATGGTA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATGGCATCAATACG
Done.