Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 156 of 253
Found at i:50177497 original size:20 final size:20
Alignment explanation
Indices: 50177460--50177497 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
50177450 ACTTAATCAG
*
50177460 GACATTTAAGAATTTTTCGC
1 GACATTTAAGAAATTTTCGC
50177480 GACATTTTAA-AAATTTTC
1 GACA-TTTAAGAAATTTTC
50177498 CAAGGTGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (20 bp):
GACATTTAAGAAATTTTCGC
Found at i:50178844 original size:57 final size:57
Alignment explanation
Indices: 50178712--50178845 Score: 178
Period size: 57 Copynumber: 2.4 Consensus size: 57
50178702 GTATAACAGG
* * * * *
50178712 ATTACTAGTCCAGGCTAAATTCTTTATATAGCGTATATTCAGAAAAGCTCGATTAGG
1 ATTACCAGTCCAGGCTAAATCCTTTATATAACGTATACTCAGAAAAGCTCGATTAGA
** * *
50178769 ATTACCAACCCAGGCTAAATCCTTTATATAACGTATGCTCAGAAGAGCTCGATTAGA
1 ATTACCAGTCCAGGCTAAATCCTTTATATAACGTATACTCAGAAAAGCTCGATTAGA
*
50178826 ATTACCAGTCCAGCCTAAAT
1 ATTACCAGTCCAGGCTAAAT
50178846 TCTAATTGTA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 65 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (57 bp):
ATTACCAGTCCAGGCTAAATCCTTTATATAACGTATACTCAGAAAAGCTCGATTAGA
Found at i:50178863 original size:57 final size:57
Alignment explanation
Indices: 50178750--50178863 Score: 131
Period size: 57 Copynumber: 2.0 Consensus size: 57
50178740 TAGCGTATAT
* * * *
50178750 TCAGAAAAGCTCGATTAGGATTACCAACCCAGGCTAAATCCTTTATATAACGTATGC
1 TCAGAAAAGCTCGATTAGAATTACCAACCCAGCCTAAATCCTATATATAACATATGC
* ** * *
50178807 TCAGAAGAGCTCGATTAGAATTACCAGTCCAGCCTAAATTCTA-ATTGTAACATATGC
1 TCAGAAAAGCTCGATTAGAATTACCAACCCAGCCTAAATCCTATA-TATAACATATGC
50178864 ACAAGAGATA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
56 1 0.02
57 46 0.98
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (57 bp):
TCAGAAAAGCTCGATTAGAATTACCAACCCAGCCTAAATCCTATATATAACATATGC
Found at i:50182137 original size:26 final size:27
Alignment explanation
Indices: 50182101--50182154 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
50182091 GTTGCCATGG
50182101 TATCTTTCAACCATGGTCTTATTCATT
1 TATCTTTCAACCATGGTCTTATTCATT
50182128 TATC-TTCAACCATGGTCTTATTCATT
1 TATCTTTCAACCATGGTCTTATTCATT
50182154 T
1 T
50182155 CATGTCACGT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.48
Consensus pattern (27 bp):
TATCTTTCAACCATGGTCTTATTCATT
Found at i:50182153 original size:72 final size:72
Alignment explanation
Indices: 50182060--50182193 Score: 216
Period size: 72 Copynumber: 1.9 Consensus size: 72
50182050 CATAGTGTCT
* *
50182060 TTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATT
1 TTCAACCATGGTCTTACTCA-TTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATT
50182124 CATTTATC
65 CATTTATC
* *
50182132 TTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGTTCTTA
1 TTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTA
50182194 CACATTTCAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
71 4 0.07
72 53 0.93
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.44
Consensus pattern (72 bp):
TTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTC
ATTTATC
Found at i:50182184 original size:46 final size:46
Alignment explanation
Indices: 50182128--50182295 Score: 284
Period size: 46 Copynumber: 3.7 Consensus size: 46
50182118 CTTATTCATT
** * *
50182128 TATC-TTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATGG
1 TATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGG
*
50182173 TATCTTTCAACCATGTTCTTACACATTTCATATCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGG
50182219 TATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGG
50182265 TATCTTTCAACCATGGTCTTACACATTTCAT
1 TATCTTTCAACCATGGTCTTACACATTTCAT
50182296 TTCAGAAAGC
Statistics
Matches: 116, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 4 0.03
46 112 0.97
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.40
Consensus pattern (46 bp):
TATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGG
Found at i:50193067 original size:13 final size:13
Alignment explanation
Indices: 50193049--50193073 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50193039 CGTGTACGAC
50193049 ACACGGCCATGTT
1 ACACGGCCATGTT
50193062 ACACGGCCATGT
1 ACACGGCCATGT
50193074 GTCCCCTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (13 bp):
ACACGGCCATGTT
Found at i:50211711 original size:78 final size:81
Alignment explanation
Indices: 50211570--50211751 Score: 223
Period size: 78 Copynumber: 2.3 Consensus size: 81
50211560 TACTCGTTCA
* *
50211570 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
50211634 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
**
50211650 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
50211711 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
50211728 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
50211752 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 3 0.03
78 45 0.51
79 28 0.31
80 13 0.15
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:50211751 original size:40 final size:40
Alignment explanation
Indices: 50211549--50211751 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
50211539 CGGAATTTAA
** *
50211549 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50211589 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50211629 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
50211668 CCGGA-ATTAGT-ACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
50211707 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
50211747 CCGGA
1 CCGGA
50211752 CATCATTCGA
Statistics
Matches: 140, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
37 2 0.01
38 17 0.12
39 28 0.20
40 82 0.59
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50220436 original size:40 final size:39
Alignment explanation
Indices: 50220392--50220655 Score: 281
Period size: 40 Copynumber: 6.8 Consensus size: 39
50220382 ATAACCACAA
* *
50220392 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAA-TGCCTTCGGGTCTTAACCCGGATATATCAACTC
*
50220432 GCACAATGCCTTCGGGTCTTAGCCCGGATAT-TC-ACTC
1 GCACAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* * * *
50220469 GCACAATGCCGTC-GGTCTT-AGCCGGATAAATC-ACTA
1 GCACAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* *
50220505 GCACAATTGCCTTC-GGTCTTAACCCGGGTATAGCAACTC
1 GCACAA-TGCCTTCGGGTCTTAACCCGGATATATCAACTC
*
50220544 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCAC-AATGCCTTCGGGTCTTAACCCGGATATATCAACTC
* * *
50220584 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAACCCGGAT-ATATCAACTC
* * *
50220624 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCA-CAATGCCTTCGGGTCTTAACCCGGATAT
50220656 CATTCAAATG
Statistics
Matches: 194, Mismatches: 22, Indels: 17
0.83 0.09 0.07
Matches are distributed among these distances:
35 7 0.04
36 17 0.09
37 28 0.14
38 10 0.05
39 38 0.20
40 90 0.46
41 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAACCCGGATATATCAACTC
Found at i:50220666 original size:113 final size:111
Alignment explanation
Indices: 50220372--50220651 Score: 362
Period size: 113 Copynumber: 2.4 Consensus size: 111
50220362 TTCTTCGAAT
* * * * *
50220372 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
1 TTAGCCGGATA-AATCACTAGCACAAATGCCTTC-GGACTTAACCCGGGTATAGCAACTCACA-A
50220437 ATGCCTTCGGGTCTTAGCCCGGATATTCACTCGCACAATGCCGTCGGTC
63 ATGCCTTCGGGTCTTAGCCCGGATATTCACTCGCACAATGCCGTCGGTC
* *
50220486 TTAGCCGGATAAATCACTAGCACAATTGCCTTCGGTCTTAACCCGGGTATAGCAACTCGCACAAA
1 TTAGCCGGATAAATCACTAGCACAAATGCCTTCGGACTTAACCCGGGTATAGCAACT--CACAAA
*
50220551 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
64 TGCCTTCGGGTCTTAGCCCGGATAT-TC-ACTCGCAC-AATGCCGTC-GGTC
* *
50220603 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAG-CCGGAT-AAATCACTAGCACAAATGCCTTC-GGACTTAACCCGG
50220652 ATATCATTCA
Statistics
Matches: 149, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
112 24 0.16
113 47 0.32
114 16 0.11
115 8 0.05
116 8 0.05
117 8 0.05
118 6 0.04
119 21 0.14
120 11 0.07
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (111 bp):
TTAGCCGGATAAATCACTAGCACAAATGCCTTCGGACTTAACCCGGGTATAGCAACTCACAAATG
CCTTCGGGTCTTAGCCCGGATATTCACTCGCACAATGCCGTCGGTC
Found at i:50223694 original size:14 final size:14
Alignment explanation
Indices: 50223675--50223703 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50223665 GTCTCGTTTC
50223675 ATACCATGCCACCA
1 ATACCATGCCACCA
50223689 ATACCATGCCACCA
1 ATACCATGCCACCA
50223703 A
1 A
50223704 AAAACGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.41, G:0.07, T:0.14
Consensus pattern (14 bp):
ATACCATGCCACCA
Found at i:50228672 original size:40 final size:40
Alignment explanation
Indices: 50228627--50228898 Score: 368
Period size: 40 Copynumber: 6.8 Consensus size: 40
50228617 ATAACCACAA
* * * *
50228627 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
50228667 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
50228707 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
50228747 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
50228787 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
50228827 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
50228867 GCATAAATGCCTTCGGGACTTAGCCTGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
50228899 CATTCAAATG
Statistics
Matches: 206, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.02
40 194 0.94
41 8 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:50228824 original size:120 final size:120
Alignment explanation
Indices: 50228607--50228888 Score: 494
Period size: 120 Copynumber: 2.4 Consensus size: 120
50228597 TCTTCGGAAT
* * *
50228607 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
50228671 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
66 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
50228726 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
*
50228791 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTC
66 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
* * *
50228846 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTA
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTA
50228889 GCCTGGATAT
Statistics
Matches: 155, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
119 4 0.03
120 151 0.97
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
Found at i:50239923 original size:21 final size:21
Alignment explanation
Indices: 50239899--50239938 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
50239889 TCTTTAGTCT
*
50239899 AGAT-GATGAATCTGGCTTCTG
1 AGATGGATCAATC-GGCTTCTG
50239920 AGATGGATCAATCGGCTTC
1 AGATGGATCAATCGGCTTC
50239939 CTTTAGCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (21 bp):
AGATGGATCAATCGGCTTCTG
Found at i:50249280 original size:40 final size:40
Alignment explanation
Indices: 50249225--50249426 Score: 300
Period size: 40 Copynumber: 5.0 Consensus size: 40
50249215 GATGATAACG
*
50249225 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
* * *
50249265 GGGCTAAGCCCCGAAGGCATTTGTGTGAGTTACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
50249305 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
50249345 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
50249385 GGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
50249425 GG
1 GG
50249427 TTAAATTACG
Statistics
Matches: 148, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 145 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:50255583 original size:37 final size:37
Alignment explanation
Indices: 50255533--50255611 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
50255523 TTATTACGAA
* *
50255533 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
50255570 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
50255607 GTCTT
1 GTCTT
50255612 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:50255808 original size:47 final size:47
Alignment explanation
Indices: 50255730--50256263 Score: 869
Period size: 47 Copynumber: 11.4 Consensus size: 47
50255720 CCCTTCGGGA
* * * * * * *
50255730 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50255777 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50255824 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50255871 CTT-T-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50255916 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50255963 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50256008 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50256057 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50256104 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50256151 CTTATCACATATATACACTTTCACATTCATCACATCGGCTAGTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50256198 CTTATCACACATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50256245 CTTATCACATATATACACT
1 CTTATCACATATATACACT
50256264 GTCTTGGCTG
Statistics
Matches: 461, Mismatches: 20, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
45 87 0.19
46 2 0.00
47 327 0.71
49 45 0.10
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50267269 original size:49 final size:49
Alignment explanation
Indices: 50267216--50267379 Score: 222
Period size: 49 Copynumber: 3.3 Consensus size: 49
50267206 CTGGTACGCA
* *
50267216 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGAACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGAACATG
* ** * *
50267265 TAGTAGCCTACACTTAGTACTACACACATGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGAACATG
**
50267314 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCT-GATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCTGGA-ACATG
50267364 TAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTA
50267380 TTCATCATAT
Statistics
Matches: 99, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
49 73 0.74
50 26 0.26
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGAACATG
Found at i:50267634 original size:43 final size:43
Alignment explanation
Indices: 50267573--50267656 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
50267563 ACTTAAAATG
*
50267573 ACAATTATGTTACTACATTTATACCTAAACTTACCTCGTATTA
1 ACAATTATGTTACTACATTTACACCTAAACTTACCTCGTATTA
*
50267616 ACAATTATGTTGCTACATTTACACCTAAACTTACCTCGTAT
1 ACAATTATGTTACTACATTTACACCTAAACTTACCTCGTAT
50267657 GCGAAAATGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.33, C:0.23, G:0.06, T:0.38
Consensus pattern (43 bp):
ACAATTATGTTACTACATTTACACCTAAACTTACCTCGTATTA
Found at i:50271180 original size:73 final size:73
Alignment explanation
Indices: 50271061--50271206 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
50271051 GATGCGAAGA
50271061 GACACCTATGTTTGCATGATTGAATACTCAACTTGGAATGTTTGAAACTTTTATGTTCTTTTAGT
1 GACACCTATGTTTGCATGATTGAATACTCAACTTGGAATGTTTGAAACTTTTATGTTCTTTTAGT
50271126 CGAATTCT
66 CGAATTCT
50271134 GACACCTATGTTTGCATGATTGAATACTCAACTTGGAATGTTTGAAACTTTTATGTTCTTTTAGT
1 GACACCTATGTTTGCATGATTGAATACTCAACTTGGAATGTTTGAAACTTTTATGTTCTTTTAGT
50271199 CGAATTCT
66 CGAATTCT
50271207 CAATGTATGA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.42
Consensus pattern (73 bp):
GACACCTATGTTTGCATGATTGAATACTCAACTTGGAATGTTTGAAACTTTTATGTTCTTTTAGT
CGAATTCT
Found at i:50275126 original size:34 final size:34
Alignment explanation
Indices: 50275083--50275162 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
50275073 CAGTGCAAAG
* * **
50275083 CAGTCTGGGCCTAAGCCCA-TATCAGTGGCAATAT
1 CAGTGTGGGCCTAAGCCCATTA-CACTAACAATAT
*
50275117 CAGTGTGGGCCTTAGCCCATTACACTAACAATAT
1 CAGTGTGGGCCTAAGCCCATTACACTAACAATAT
50275151 CAGTGTGGGCCT
1 CAGTGTGGGCCT
50275163 TAGTCCAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 38 0.95
35 2 0.05
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (34 bp):
CAGTGTGGGCCTAAGCCCATTACACTAACAATAT
Found at i:50279363 original size:29 final size:29
Alignment explanation
Indices: 50279329--50279401 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
50279319 AATCAACCAT
* *
50279329 GCACACTTAGTGCCATGTACTTT-AAACTC
1 GCACACTTAGTGCCATGCA-TTTCAAACCC
*
50279358 GCACACTTAGTGCCATGCATTTCAAGCCC
1 GCACACTTAGTGCCATGCATTTCAAACCC
50279387 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
50279402 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATGCATTTCAAACCC
Found at i:50288124 original size:40 final size:40
Alignment explanation
Indices: 50288087--50288272 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
50288077 GCTACTCGTT
* *
50288087 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
50288127 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
50288167 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
50288207 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
50288248 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50288273 CATCATTCAA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50373739 original size:39 final size:40
Alignment explanation
Indices: 50373637--50373821 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
50373627 TCGAATGATG
* * *
50373637 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50373677 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
50373717 TTCGGGCTAAG-CCCGAATGCATTGGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50373756 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50373797 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50373822 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 31 0.26
40 80 0.67
41 9 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50373802 original size:79 final size:81
Alignment explanation
Indices: 50373638--50373819 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 81
50373628 CGAATGATGT
* * *
50373638 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
50373702 GTGTGAGTTACTAATT
66 GTGCGAGTTACTAATA
* * * **
50373718 TCGGGCTAAG-CCCGAATGCATTGGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCATT
50373780 TGTGCGAGTTACT-ATAA
65 TGTGCGAGTTACTAAT-A
*
50373797 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
50373820 TGAACGAGTA
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.04
79 56 0.66
80 26 0.31
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATA
Found at i:50373843 original size:79 final size:79
Alignment explanation
Indices: 50373638--50373844 Score: 210
Period size: 79 Copynumber: 2.6 Consensus size: 79
50373628 CGAATGATGT
* *
50373638 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
* *
50373701 TGTGTGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* * * *
50373718 TCGGGCTAAG-CCCGAATGCATTGGTGCGAGTCA-CTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-AGCTATATCC-GGTTAAGAT-CCGAAGGCATT
50373780 TGTGCGAGTTACT-ATAA
63 TGTGCGAGTTACTAAT-A
* **
50373797 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
50373845 ATTTCGAAGG
Statistics
Matches: 104, Mismatches: 15, Indels: 17
0.76 0.11 0.12
Matches are distributed among these distances:
78 3 0.03
79 60 0.58
80 41 0.39
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:50377469 original size:39 final size:39
Alignment explanation
Indices: 50377415--50377492 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
50377405 GATAGGTACA
50377415 CTTGCCTACATCGTGATAATAGTTAGTTTCAAGAACGAT
1 CTTGCCTACATCGTGATAATAGTTAGTTTCAAGAACGAT
50377454 CTTGCCTACATCGTGATAATAGTTAGTTTCAAGAACGAT
1 CTTGCCTACATCGTGATAATAGTTAGTTTCAAGAACGAT
50377493 TCTTTATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (39 bp):
CTTGCCTACATCGTGATAATAGTTAGTTTCAAGAACGAT
Found at i:50394288 original size:24 final size:24
Alignment explanation
Indices: 50394269--50394320 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
50394259 TCTTTCAGTT
50394269 AAACTTTGTTTATTTGTTTCAATC
1 AAACTTTGTTTATTTGTTTCAATC
50394293 AAACTTTGTTTATTTGTTTCAATC
1 AAACTTTGTTTATTTGTTTCAATC
50394317 AAAC
1 AAAC
50394321 ACTGATTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (24 bp):
AAACTTTGTTTATTTGTTTCAATC
Found at i:50395967 original size:24 final size:24
Alignment explanation
Indices: 50395940--50395991 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
50395930 TATTTCAGTT
50395940 AAACTTTGTTTATTTGTTTCAATC
1 AAACTTTGTTTATTTGTTTCAATC
50395964 AAACTTTGTTTATTTGTTTCAATC
1 AAACTTTGTTTATTTGTTTCAATC
50395988 AAAC
1 AAAC
50395992 ACTGATTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (24 bp):
AAACTTTGTTTATTTGTTTCAATC
Found at i:50398569 original size:23 final size:22
Alignment explanation
Indices: 50398538--50398583 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
50398528 CACAATCCAA
50398538 ATTGCTACAGTCCAGGGACTTGT
1 ATTGCTACA-TCCAGGGACTTGT
* * *
50398561 ATTGGTACATCTATGGACTTGT
1 ATTGCTACATCCAGGGACTTGT
50398583 A
1 A
50398584 CCACAACAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (22 bp):
ATTGCTACATCCAGGGACTTGT
Found at i:50399478 original size:13 final size:13
Alignment explanation
Indices: 50399460--50399487 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50399450 TATGTTAAAT
50399460 AATTTTATATGAA
1 AATTTTATATGAA
50399473 AATTTTATATGAA
1 AATTTTATATGAA
50399486 AA
1 AA
50399488 GCTGCAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (13 bp):
AATTTTATATGAA
Found at i:50422391 original size:27 final size:27
Alignment explanation
Indices: 50422361--50422412 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
50422351 ACACTAGTAG
*
50422361 AGGGGATATCAGAGGCGGCACCAGTGA
1 AGGGGATATCAAAGGCGGCACCAGTGA
* *
50422388 AGGGGCTGTCAAAGGCGGCACCAGT
1 AGGGGATATCAAAGGCGGCACCAGT
50422413 TGTGCCTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.21, G:0.40, T:0.12
Consensus pattern (27 bp):
AGGGGATATCAAAGGCGGCACCAGTGA
Found at i:50422525 original size:5 final size:5
Alignment explanation
Indices: 50422508--50422559 Score: 56
Period size: 5 Copynumber: 10.8 Consensus size: 5
50422498 ATTACAGAAC
* *
50422508 AAGAG AGAGAG AAGAG AAGAG AAGA- AAGA- AAGAA AAGAG AAGA- AAGAA
1 AAGAG A-AGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG
50422556 AAGA
1 AAGA
50422560 AAATGTAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
4 12 0.28
5 26 0.60
6 5 0.12
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (5 bp):
AAGAG
Found at i:50422545 original size:18 final size:19
Alignment explanation
Indices: 50422519--50422562 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 19
50422509 AGAGAGAGAG
*
50422519 AAGAGAAGAGAAGAAAG-A
1 AAGAAAAGAGAAGAAAGAA
50422537 AAGAAAAGAGAAGAAAGAA
1 AAGAAAAGAGAAGAAAGAA
50422556 AAGAAAA
1 AAGAAAA
50422563 TGTAATTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (19 bp):
AAGAAAAGAGAAGAAAGAA
Found at i:50422603 original size:39 final size:40
Alignment explanation
Indices: 50422547--50422628 Score: 148
Period size: 39 Copynumber: 2.0 Consensus size: 40
50422537 AAGAAAAGAG
50422547 AAGAAAGAAAAGAAAATGTAATTTTCTTATTGTTATTTTCA
1 AAGAAAG-AAAGAAAATGTAATTTTCTTATTGTTATTTTCA
50422588 AAGAAAG-AAGAAAATGTAATTTTCTTATTGTTATTTTCA
1 AAGAAAGAAAGAAAATGTAATTTTCTTATTGTTATTTTCA
50422627 AA
1 AA
50422629 TATAATAGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
39 34 0.83
41 7 0.17
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (40 bp):
AAGAAAGAAAGAAAATGTAATTTTCTTATTGTTATTTTCA
Found at i:50422701 original size:23 final size:23
Alignment explanation
Indices: 50422670--50422714 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
50422660 GTTAGTATTA
*
50422670 TATAGTTTGTTTAGTGTTATTTT
1 TATAGTTTGTTTAGTGTGATTTT
* *
50422693 TATATTTTGTTTATTGTGATTT
1 TATAGTTTGTTTAGTGTGATTT
50422715 GTTAGTAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.18, C:0.00, G:0.16, T:0.67
Consensus pattern (23 bp):
TATAGTTTGTTTAGTGTGATTTT
Found at i:50422803 original size:27 final size:27
Alignment explanation
Indices: 50422768--50422819 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
50422758 AAAATTTTTT
*
50422768 AATATATTTGATATTGTTAGAAATGAC
1 AATAAATTTGATATTGTTAGAAATGAC
50422795 AATAAATTTGATATTGTTAGAAATG
1 AATAAATTTGATATTGTTAGAAATG
50422820 GACTATTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.40
Consensus pattern (27 bp):
AATAAATTTGATATTGTTAGAAATGAC
Found at i:50428428 original size:22 final size:22
Alignment explanation
Indices: 50428400--50428446 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
50428390 ATTCATATAT
50428400 ATATTACCTTAACCTTAATAAA
1 ATATTACCTTAACCTTAATAAA
50428422 ATATTACCTTAACCTTAATAAA
1 ATATTACCTTAACCTTAATAAA
50428444 ATA
1 ATA
50428447 ACTAAATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (22 bp):
ATATTACCTTAACCTTAATAAA
Found at i:50429999 original size:43 final size:42
Alignment explanation
Indices: 50429952--50430061 Score: 114
Period size: 43 Copynumber: 2.5 Consensus size: 42
50429942 TCCTAGACGT
* * *
50429952 GGTCTTACATGTAATCACATATCGATG-CCACTGTCCCAGATAG
1 GGTCTTACACG-AATCACATATCGATGTCCA-TGTCCCAAACAG
* * * *
50429995 GGTCTTAGACGAATCACGTATACGATGTCGATGTCCCAAACAT
1 GGTCTTACACGAATCACATAT-CGATGTCCATGTCCCAAACAG
50430038 GGTCTTACACGCAATCACATATCG
1 GGTCTTACACG-AATCACATATCG
50430062 TAAATCCTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
42 9 0.16
43 35 0.64
44 11 0.20
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAATCACATATCGATGTCCATGTCCCAAACAG
Found at i:50433417 original size:37 final size:37
Alignment explanation
Indices: 50433359--50433470 Score: 188
Period size: 37 Copynumber: 3.0 Consensus size: 37
50433349 GCTCAGACGA
* * *
50433359 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
50433396 AATCTCCACACGTAGTCATCGGGACTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
50433433 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
50433470 A
1 A
50433471 TTTCCAAGTT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:50433736 original size:47 final size:47
Alignment explanation
Indices: 50433674--50434160 Score: 650
Period size: 47 Copynumber: 10.1 Consensus size: 47
50433664 ACACGTTTTG
* * * **
50433674 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
50433721 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
50433768 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
50433815 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
50433862 CATTGGCCATTCGGCCTTATCACGCATATATAAATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACAT--ACGCATGTTCACATTCATCA
50433915 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
50433962 CATTGGCCATTCGACCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
50434013 CATTGGCCATCCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
50434060 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
* *
50434111 CATTGGCCATTCGACCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
50434158 CAT
1 CAT
50434161 AAAATCCTAA
Statistics
Matches: 393, Mismatches: 33, Indels: 28
0.87 0.07 0.06
Matches are distributed among these distances:
47 261 0.66
49 4 0.01
51 89 0.23
53 39 0.10
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:50434058 original size:98 final size:98
Alignment explanation
Indices: 50433674--50434160 Score: 765
Period size: 98 Copynumber: 5.0 Consensus size: 98
50433664 ACACGTTTTG
* *
50433674 CATTAGCCATTCGGCCTTA-C-CACATATAT-T-CATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * *
50433735 CCTTATCTCATATATGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
** *
50433768 CATTGGCCATTCGGCCTTATCACAC----ATACGCATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
50433829 CCTTATCACACATACGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
*
50433862 CATTGGCCATTCGGCCTTATCACGCATATATAAATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCACACATATAT--ATACAGGTTCACATTCATCACATTGGCCATTC
50433927 GGCCTTATCACACATACGCATGTTCACATTCATCA
64 GGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
50433962 CATTGGCCATTCGACCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATCCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
50434027 CCTTATCACACATACGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
* *
50434060 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGA
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
50434125 CCTTATCACACATACGCATGTTCACATCCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
50434158 CAT
1 CAT
50434161 AAAATCCTAA
Statistics
Matches: 366, Mismatches: 17, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
92 2 0.01
94 103 0.28
95 1 0.00
96 3 0.01
98 164 0.45
100 93 0.25
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCA
Found at i:50438167 original size:40 final size:40
Alignment explanation
Indices: 50438135--50438572 Score: 617
Period size: 40 Copynumber: 10.8 Consensus size: 40
50438125 CCAGCATGAT
* * * *
50438135 TGCTCTTCGGGACCTAGCCCGGATATAACACCAACACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
50438175 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
50438215 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50438255 TGCTCTT-GGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
50438294 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
50438334 TACTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
50438374 TGCTCTTCGGGATTTAGCCCAGATATATCACTAGCACGAAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT-------AGCACGAA
*
50438421 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50438461 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50438501 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50438541 TGCTCTTCGGGACTTAGCCCAGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
50438573 CTCAATTCTC
Statistics
Matches: 359, Mismatches: 31, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
39 35 0.10
40 287 0.80
47 37 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:50438456 original size:127 final size:127
Alignment explanation
Indices: 50438135--50438540 Score: 563
Period size: 127 Copynumber: 3.3 Consensus size: 127
50438125 CCAGCATGAT
**
50438135 TGCTCTTCGGGACCTAGCCCGGATATA--AC-A-C-C-AA-CACGAATGCTCTTCGGAACTTAGC
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAAGCACGAATGCTCTTCGGAACTTAGC
* * * *
50438193 ACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
66 CCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50438255 TGCTCTT-GGGATTTAGCCCGGATATATCACT-------AGCACGAATGCTCTTCGGAACTTAGT
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAAGCACGAATGCTCTTCGGAACTTAGC
* * *
50438312 CCGGATACATCACTAGCACGAATACTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
66 CCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
50438374 TGCTCTTCGGGATTTAGCCCAGATATATCACTAGCACGAAGCACGAATGCTCCTCGGGACTTAGC
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAAGCACGAATGCTCTTCGGAACTTAGC
*
50438439 CCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66 CCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
50438501 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
50438541 TGCTCTTCGG
Statistics
Matches: 253, Mismatches: 21, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
118 1 0.00
119 102 0.40
120 30 0.12
121 2 0.01
127 118 0.47
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (127 bp):
TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAAGCACGAATGCTCTTCGGAACTTAGC
CCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:50438509 original size:167 final size:163
Alignment explanation
Indices: 50438135--50438573 Score: 634
Period size: 167 Copynumber: 2.7 Consensus size: 163
50438125 CCAGCATGAT
* * * * * *
50438135 TGCTCTTCGGGACCTAGCCCGGATATAACACCAACACGAATGCTCTTCGGAACTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
* * * *
50438200 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCC-G-GATA-CA-TCACTAGCACGAATGCTCT
66 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATATATCACTCACAAGCACGAATGCTCT
* *
50438261 TGGGATTTAGCCCGGATATATCACTAGCACGAA
131 CGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * * *
50438294 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATACTCTTCGGGATTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
50438359 TATCACTAGCACGAATGCTCTTCGGGATTTAGCCCAGATATATCACTAGCACGAAGCACGAATGC
66 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATATATCACT--CAC-AAGCACGAATGC
50438424 TCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
128 T-CTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
50438461 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCTGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
50438526 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATATATCACTC
66 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATATATCACTC
50438574 TCAATTCTCA
Statistics
Matches: 246, Mismatches: 26, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
159 86 0.35
160 1 0.00
161 3 0.01
162 2 0.01
163 1 0.00
165 4 0.02
166 12 0.05
167 137 0.56
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (163 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATATATCACTCACAAGCACGAATGCTCT
CGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:50439848 original size:37 final size:37
Alignment explanation
Indices: 50439805--50439916 Score: 188
Period size: 37 Copynumber: 3.0 Consensus size: 37
50439795 GCTCAGACGA
* * *
50439805 AATCTCCACATGAAGTTATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
50439842 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
*
50439879 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
50439916 A
1 A
50439917 TTTCCAAGTT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
Found at i:50440182 original size:47 final size:47
Alignment explanation
Indices: 50440120--50440542 Score: 381
Period size: 47 Copynumber: 9.1 Consensus size: 47
50440110 ACACGTTTCG
* * *
50440120 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50440167 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATTA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
50440214 CATTGGCCATTCGGCATGT-TCAC--AT-T-CA---TCACATT-GGC-
1 CATTGGCCATTCGGCCT-TATCACATATATGCATGTTCACATTCATCA
* * * * *
50440252 CATTCGGCCTTATC-ACGC--AT-ATATATATACAGGTTCACATTCATCA
1 CATT-GGCCAT-TCGGC-CTTATCACATATATGCATGTTCACATTCATCA
* *
50440298 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * **
50440345 CATTGGCCATTCGACCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* *
50440396 CATTGGCCA-TCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
50440442 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* * * *
50440493 CATTGGCCATTCGACCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
50440540 CAT
1 CAT
50440543 AAAATCCTAA
Statistics
Matches: 302, Mismatches: 47, Indels: 54
0.75 0.12 0.13
Matches are distributed among these distances:
37 1 0.00
38 5 0.02
39 8 0.03
40 10 0.03
41 2 0.01
43 2 0.01
44 11 0.04
45 9 0.03
46 34 0.11
47 132 0.44
48 4 0.01
49 9 0.03
50 9 0.03
51 66 0.22
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:50440231 original size:31 final size:31
Alignment explanation
Indices: 50440196--50440259 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
50440186 TCTCATATAT
*
50440196 GCATGTTCACATTCATTACATTGGCCATTCG
1 GCATGTTCACATTCATCACATTGGCCATTCG
50440227 GCATGTTCACATTCATCACATTGGCCATTCG
1 GCATGTTCACATTCATCACATTGGCCATTCG
50440258 GC
1 GC
50440260 CTTATCACGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (31 bp):
GCATGTTCACATTCATCACATTGGCCATTCG
Found at i:50440235 original size:78 final size:81
Alignment explanation
Indices: 50440150--50440312 Score: 242
Period size: 78 Copynumber: 2.0 Consensus size: 81
50440140 CACATATATT
* *
50440150 CATGTTCACATTCATCACATTGGCCATTCGGCCTTAT-C-T-CATATATGCATGTTCACATTCAT
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCCATACATATATACAGGTTCACATTCAT
*
50440212 TACATTGGCCATTCGG
66 CACATTGGCCATTCGG
*
50440228 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATT
1 CATGTTCACATTCATCACATTGGCCATTCGGCCTTAT--C-CATACATATATACAGGTTCACATT
50440293 CATCACATTGGCCATTCGG
63 CATCACATTGGCCATTCGG
50440312 C
1 C
50440313 CTTATCACAC
Statistics
Matches: 75, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
78 37 0.49
82 1 0.01
83 1 0.01
84 36 0.48
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.34
Consensus pattern (81 bp):
CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCCATACATATATACAGGTTCACATTCAT
CACATTGGCCATTCGG
Found at i:50440404 original size:51 final size:50
Alignment explanation
Indices: 50440231--50440520 Score: 405
Period size: 51 Copynumber: 5.8 Consensus size: 50
50440221 CATTCGGCAT
*
50440231 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATACAG
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCA--CACATATATATAC-G
***
50440284 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT---
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACG
*
50440331 GTTCACATTCATCACATTGGCCATTCGACCTTATCACACATATATATACGG
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATAC-G
***
50440382 GTTCACATTCATCACATTGGCCA-TCGGCCTTATCACACATACGCAT---
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACG
50440428 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGG
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATAC-G
*
50440479 GTTCACATTCATCACATTGGCCATTCGACCTTATCACACATA
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA
50440521 CGCATGTTCA
Statistics
Matches: 212, Mismatches: 16, Indels: 20
0.85 0.06 0.08
Matches are distributed among these distances:
46 23 0.11
47 63 0.30
50 19 0.09
51 71 0.33
53 36 0.17
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (50 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACG
Found at i:50440454 original size:97 final size:98
Alignment explanation
Indices: 50440227--50440542 Score: 562
Period size: 97 Copynumber: 3.2 Consensus size: 98
50440217 TGGCCATTCG
* *
50440227 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACAT
1 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA--CACATATATATACGGGTTCACAT
50440292 TCATCACATTGGCCATTCGGCCTTATCACACATAC
64 TCATCACATTGGCCATTCGGCCTTATCACACATAC
*
50440327 GCATGTTCACATTCATCACATTGGCCATTCGACCTTATCACACATATATATACGGGTTCACATTC
1 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTC
50440392 ATCACATTGGCCA-TCGGCCTTATCACACATAC
66 ATCACATTGGCCATTCGGCCTTATCACACATAC
50440424 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTC
1 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTC
*
50440489 ATCACATTGGCCATTCGACCTTATCACACATAC
66 ATCACATTGGCCATTCGGCCTTATCACACATAC
*
50440522 GCATGTTCACATCCATCACAT
1 GCATGTTCACATTCATCACAT
50440543 AAAATCCTAA
Statistics
Matches: 209, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
97 96 0.46
98 74 0.35
100 39 0.19
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (98 bp):
GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACACATAC
Found at i:50446994 original size:33 final size:33
Alignment explanation
Indices: 50446957--50447108 Score: 112
Period size: 32 Copynumber: 4.7 Consensus size: 33
50446947 TACCCAAGTG
* *
50446957 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACAACTTGAAAAGGTAAGGTACACTTTGTGT
** * *
50446990 GTAC-ACTTGGTAAGGTTAGGTATACTTTGTGT
1 GTACAACTTGAAAAGGTAAGGTACACTTTGTGT
* * * *
50447022 ATACCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACAACT-TGAAAAGGTAAGGTACACTTTGTGT
* * * ***
50447055 GTACCACTTGAAAAGG-AATGTACACCTAAAGT
1 GTACAACTTGAAAAGGTAAGGTACACTTTGTGT
* *
50447087 GTACAACTGGAAAAGGAAAGGT
1 GTACAACTTGAAAAGGTAAGGT
50447109 CCATCGAAAA
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
32 52 0.54
33 43 0.45
34 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.30
Consensus pattern (33 bp):
GTACAACTTGAAAAGGTAAGGTACACTTTGTGT
Found at i:50448092 original size:13 final size:14
Alignment explanation
Indices: 50448062--50448094 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
50448052 GCCATATGGG
50448062 CGTGTGCCCTGGAT
1 CGTGTGCCCTGGAT
50448076 -GTGTGCCCTGG-T
1 CGTGTGCCCTGGAT
50448088 CGTGTGC
1 CGTGTGC
50448095 TCCTTTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.06
13 17 0.94
ACGTcount: A:0.03, C:0.27, G:0.39, T:0.30
Consensus pattern (14 bp):
CGTGTGCCCTGGAT
Found at i:50450187 original size:40 final size:40
Alignment explanation
Indices: 50450125--50450369 Score: 379
Period size: 40 Copynumber: 6.2 Consensus size: 40
50450115 AAACCAAGTA
* * *
50450125 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
50450164 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50450204 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50450244 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50450284 CCTTCGGTACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
50450324 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50450364 CCTTCG
1 CCTTCG
50450370 TTATCATCCG
Statistics
Matches: 192, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
39 14 0.07
40 178 0.93
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50452466 original size:21 final size:21
Alignment explanation
Indices: 50452440--50452486 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
50452430 TGATGATCTA
*
50452440 GAAAAAGCTGAATTTTGGCTG
1 GAAAAAGCTGAATTCTGGCTG
50452461 GAAAAAGCTGAATTCTGGCTG
1 GAAAAAGCTGAATTCTGGCTG
50452482 GAAAA
1 GAAAA
50452487 TACTACTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.38, C:0.11, G:0.28, T:0.23
Consensus pattern (21 bp):
GAAAAAGCTGAATTCTGGCTG
Found at i:50459675 original size:12 final size:12
Alignment explanation
Indices: 50459658--50459689 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
50459648 TAGACACACG
50459658 CCCGTGTGTCTA
1 CCCGTGTGTCTA
50459670 CCCGTGTGTCTA
1 CCCGTGTGTCTA
50459682 CCCGTGTG
1 CCCGTGTG
50459690 GACAATTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.34, G:0.28, T:0.31
Consensus pattern (12 bp):
CCCGTGTGTCTA
Found at i:50462135 original size:37 final size:37
Alignment explanation
Indices: 50462082--50462185 Score: 181
Period size: 37 Copynumber: 2.8 Consensus size: 37
50462072 CGGATAGTCC
*
50462082 CCACACGTAGTTATCGGGTCTTACCCGGAAAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAAAAAATCT
* *
50462119 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAAAAAATCT
50462156 CCACACGTAGTCATCGGGTCTTACCCGGAA
1 CCACACGTAGTCATCGGGTCTTACCCGGAA
50462186 TATATTTCCA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGAAAAAATCT
Found at i:50462411 original size:48 final size:48
Alignment explanation
Indices: 50462357--50462665 Score: 564
Period size: 48 Copynumber: 6.4 Consensus size: 48
50462347 GCCGAATCAC
*
50462357 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
50462405 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
50462453 TAGCCATTCAGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
50462501 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
50462549 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
50462597 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
50462645 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
50462666 CACATATATA
Statistics
Matches: 252, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 252 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:50468740 original size:47 final size:46
Alignment explanation
Indices: 50468563--50468779 Score: 235
Period size: 46 Copynumber: 4.7 Consensus size: 46
50468553 ATGTAACCGT
* * * *
50468563 GCCGATGCATGTCCTAGACATGTCATACACTAGC-A-CAT-CTTGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAC-TGTG
* * * * *
50468607 GCCAACGCATGTCCCAGACATGTCTGACACTGGCTAACAT-CTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATACT-GTG
* * * *
50468653 GCCAATGCATGTCCTAGACATGTCTTACATTGGCTCTCATACTGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATACTGTG
* * *
50468699 GCTGATGCATGTCCCAGACATGGTCTTACACTGGCTATCATAATATG
1 GCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTATCATACTGTG
50468746 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
50468780 ACACAAATCT
Statistics
Matches: 145, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
44 28 0.19
45 2 0.01
46 72 0.50
47 43 0.30
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATACTGTG
Found at i:50471774 original size:93 final size:93
Alignment explanation
Indices: 50471662--50471833 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
50471652 GCCCATAAGT
* *
50471662 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50471727 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
50471755 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
50471820 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
50471834 AACCATCCTA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:50471829 original size:46 final size:46
Alignment explanation
Indices: 50471654--50471829 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
50471644 TGTAACCCGC
* *
50471654 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
50471700 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
50471746 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
50471793 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
50471830 TGCCAACCAT
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:50474251 original size:30 final size:30
Alignment explanation
Indices: 50474207--50474295 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
50474197 CAAAGATAAC
50474207 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
50474236 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
50474266 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
50474296 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:50474255 original size:15 final size:15
Alignment explanation
Indices: 50474207--50474286 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
50474197 CAAAGATAAC
*
50474207 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
50474221 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
50474236 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
50474251 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
50474266 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
50474281 AAGAAA
1 AAGAAA
50474287 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:50474295 original size:15 final size:15
Alignment explanation
Indices: 50474218--50474295 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
50474208 AGAAAACCGA
50474218 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
50474233 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
50474247 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
50474262 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
50474278 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
50474293 ATA
1 ATA
50474296 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:50479621 original size:25 final size:24
Alignment explanation
Indices: 50479587--50479653 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 24
50479577 AATCAAAATG
*
50479587 AGAATTAGAATCAGAATCAGGTGAC
1 AGAA-TAGAATCAGAATCAGGTAAC
50479612 AGAATCAGAATCA-ATATCAGGTAAC
1 AGAAT-AGAATCAGA-ATCAGGTAAC
*
50479637 AGAAATAAAATCAGAAT
1 AG-AATAGAATCAGAAT
50479654 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
24 2 0.06
25 30 0.83
26 4 0.11
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (24 bp):
AGAATAGAATCAGAATCAGGTAAC
Found at i:50479811 original size:27 final size:27
Alignment explanation
Indices: 50479771--50479850 Score: 94
Period size: 26 Copynumber: 3.0 Consensus size: 27
50479761 AACATGGCTG
* *
50479771 CCAGAACAGATATTGTGA-TAGAGTCA
1 CCAGAACAGATATTGTGAGCAGAGCCA
50479797 CCAGATACAGATATTGT-AGCAGAGCCA
1 CCAGA-ACAGATATTGTGAGCAGAGCCA
* *
50479824 CCAGAACAGATAATGTG-GCAAAGCCA
1 CCAGAACAGATATTGTGAGCAGAGCCA
50479850 C
1 C
50479851 TTTTAAGTGG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
26 25 0.53
27 22 0.47
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATATTGTGAGCAGAGCCA
Found at i:50480031 original size:22 final size:22
Alignment explanation
Indices: 50480003--50480068 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
50479993 GCAAATATGT
*
50480003 TTGGCACACAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
* * *
50480025 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGA
*
50480047 TTGGCGCAAAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
50480069 AGGCTTTAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGA
Found at i:50480512 original size:27 final size:27
Alignment explanation
Indices: 50480474--50480723 Score: 259
Period size: 27 Copynumber: 9.3 Consensus size: 27
50480464 AAACAGTAAT
* * * *
50480474 GGTAATTTTACCCCAGAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50480501 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * *
50480528 AGTAATTCTATCCTATAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50480555 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50480582 GGT-ATTGCTACCCTATAAGGGTATTTC
1 GGTAATT-CTACCCTACAAGGGTATTTC
* * *
50480609 GGTATTTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50480636 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50480663 AGTATTTCTACCCTACAAGGGTAATTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
50480690 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
50480717 GGTAATT
1 GGTAATT
50480724 TTACAAATTG
Statistics
Matches: 192, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.02
27 187 0.97
28 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:50480567 original size:81 final size:81
Alignment explanation
Indices: 50480492--50480723 Score: 297
Period size: 81 Copynumber: 2.9 Consensus size: 81
50480482 TACCCCAGAA
* * * * *
50480492 GGGTATCTCGGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTATCCTATAGGGGCATTTCAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTATCCTACAGGGGCATTTCAG
*
50480557 TAATTCTACCCTATAG
66 TAATTCTACCCTACAG
* *
50480573 GGGTATTTCGGT-ATTGCTACCCTATAAGGGTATTTCGGTATTTCTATCCTACAGGGGTATTTCA
1 GGGTATTTCGGTAATT-CTACCCTACAAGGGTATTTCGGTATTTCTATCCTACAGGGGCATTTCA
*
50480637 GTAATTCTATCCTACAG
65 GTAATTCTACCCTACAG
* * * * * *
50480654 GGGTATTTCAGTATTTCTACCCTACAAGGGTAATTCGGTATTTCTA-CCTTACAAGGGTATTTCG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTATCC-TACAGGGGCATTTCA
50480718 GTAATT
65 GTAATT
50480724 TTACAAATTG
Statistics
Matches: 133, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
80 5 0.04
81 126 0.95
82 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.38
Consensus pattern (81 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTATCCTACAGGGGCATTTCAG
TAATTCTACCCTACAG
Found at i:50480775 original size:26 final size:26
Alignment explanation
Indices: 50480707--50480910 Score: 171
Period size: 27 Copynumber: 7.7 Consensus size: 26
50480697 CTACCTTACA
*
50480707 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTAC-AATCG
** *
50480734 AGGGTATTTCAATAATTTTACAATCA
1 AGGGTATTTCGGTAATTTTACAATCG
* *
50480760 ATGATATTTCGGTAATTTTACAATTCG
1 AGGGTATTTCGGTAATTTTACAA-TCG
*
50480787 AGGGTATTTCAGTAATTTTACAATCG
1 AGGGTATTTCGGTAATTTTACAATCG
* *
50480813 ACGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTAC-AATCG
* * * * *
50480840 AGGATATTTGGGTAGTTTTATAAACCG
1 AGGGTATTTCGGTAATTTTA-CAATCG
*
50480867 -GAGTTACTTT-GGTAATTTTACAA-CTG
1 AG-GGTA-TTTCGGTAATTTTACAATC-G
* *
50480893 GGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
50480911 GGTAAACTAA
Statistics
Matches: 142, Mismatches: 27, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
25 4 0.03
26 58 0.41
27 77 0.54
28 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.40
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAATCG
Found at i:50480859 original size:53 final size:53
Alignment explanation
Indices: 50480709--50480848 Score: 208
Period size: 53 Copynumber: 2.6 Consensus size: 53
50480699 ACCTTACAAG
* * *
50480709 GGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAATAATTTTACAATCAAT
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAAC
* * *
50480762 GATATTTCGGTAATTTTACAATTCGAGGGTATTTCAGTAATTTTACAATCGAC
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAAC
* *
50480815 GGTATTTCGGTAATTTTACAAATCAAGGATATTT
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTT
50480849 GGGTAGTTTT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 77 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (53 bp):
GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAAC
Found at i:50480899 original size:80 final size:78
Alignment explanation
Indices: 50480707--50480910 Score: 223
Period size: 80 Copynumber: 2.6 Consensus size: 78
50480697 CTACCTTACA
* *
50480707 AGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAATAATTTTACAATCAATGATATTTCGG
1 AGGGTATTTCGGTAATTTTAC-AA-TGAGGGTATTTCAGTAATTTTACAATCAAGGATATTTCGG
**
50480772 TAATTTTACAATTCG
64 TAATTTTACAAACCG
* * * *
50480787 AGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGGTAATTTTACAAATCAAGGATATTTGGG
1 AGGGTATTTCGGTAATTTTACAAT-GAGGGTATTTCAGTAATTTTAC-AATCAAGGATATTTCGG
* *
50480852 TAGTTTTATAAACCG
64 TAATTTTACAAACCG
* *
50480867 -GAGTTACTTT-GGTAATTTTACAACTGGGGGTATTTCAGTAATTT
1 AG-GGTA-TTTCGGTAATTTTACAA-TGAGGGTATTTCAGTAATTT
50480911 GGTAAACTAA
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
78 1 0.01
79 22 0.21
80 77 0.74
81 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.40
Consensus pattern (78 bp):
AGGGTATTTCGGTAATTTTACAATGAGGGTATTTCAGTAATTTTACAATCAAGGATATTTCGGTA
ATTTTACAAACCG
Found at i:50482892 original size:18 final size:18
Alignment explanation
Indices: 50482871--50482905 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
50482861 AAACATTATC
50482871 AGAATTAGAATCAAAATG
1 AGAATTAGAATCAAAATG
50482889 AGAATTAGAATCAAAAT
1 AGAATTAGAATCAAAAT
50482906 CAGGTGACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.06, G:0.14, T:0.23
Consensus pattern (18 bp):
AGAATTAGAATCAAAATG
Found at i:50482923 original size:25 final size:25
Alignment explanation
Indices: 50482889--50482951 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
50482879 AATCAAAATG
50482889 AGAATTAGAATCAAAATCAGGTGAC
1 AGAATTAGAATCAAAATCAGGTGAC
* * *
50482914 AGAATCAGAATCAATATCAGGTGAT
1 AGAATTAGAATCAAAATCAGGTGAC
50482939 AGAATTAGAATCA
1 AGAATTAGAATCA
50482952 GAATGTGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.48, C:0.11, G:0.19, T:0.22
Consensus pattern (25 bp):
AGAATTAGAATCAAAATCAGGTGAC
Found at i:50483111 original size:27 final size:26
Alignment explanation
Indices: 50483073--50483135 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
50483063 AGCTTGGCTG
* *
50483073 CCAGAATAGATATTAT-GATAGAGTCA
1 CCAGAACAGATATTATAG-TAGAGCCA
*
50483099 CCAGATACAGATATTGTAGTAGAGCCA
1 CCAGA-ACAGATATTATAGTAGAGCCA
50483126 CCAGAACAGA
1 CCAGAACAGA
50483136 GAATGTGGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 10 0.31
27 21 0.66
28 1 0.03
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTATAGTAGAGCCA
Found at i:50483339 original size:22 final size:22
Alignment explanation
Indices: 50483311--50483376 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
50483301 GCAAATACGT
*
50483311 TTGGCACACAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
* * *
50483333 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGA
50483355 TTGGCACAAAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
50483377 AGACTTTAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGA
Found at i:50483820 original size:27 final size:27
Alignment explanation
Indices: 50483782--50484030 Score: 241
Period size: 27 Copynumber: 9.3 Consensus size: 27
50483772 AAACAGTAAT
* * *
50483782 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50483809 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50483836 GGTAATTCTATCCTATAAGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
50483863 AGTAATTCTACCCTACAGGGGTGTCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
50483890 AGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * *
50483917 GATATTTCTATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
50483944 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50483971 GGTATTTCTACCCTACAA-GGTA-TTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
50483996 TGGTACTTTTACCCTACAAGGTTATTTT
1 -GGTAATTCTACCCTACAAGGGTATTTC
50484024 GGTAATT
1 GGTAATT
50484031 TTACAAATTG
Statistics
Matches: 180, Mismatches: 39, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
25 3 0.02
26 20 0.11
27 155 0.86
28 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:50483910 original size:81 final size:81
Alignment explanation
Indices: 50483783--50484016 Score: 290
Period size: 81 Copynumber: 2.9 Consensus size: 81
50483773 AACAGTAATG
* * * *
50483783 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTATC
1 GTAATTCTACCCTACAGGGGTATCTCGGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTATC
*
50483848 CTATAAGGGCATTTCA
66 CTACAAGGGCATTTCA
* * * * * *
50483864 GTAATTCTACCCTACAGGGGTGTCTCAGTATTTCTACCCTATAAGGGTATTTCGATATTTCTATC
1 GTAATTCTACCCTACAGGGGTATCTCGGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTATC
* * *
50483929 CTACAGGGGTATTTTA
66 CTACAAGGGCATTTCA
* * * * *
50483945 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAA-GGTATTCTGGTACTTTTACC
1 GTAATTCTACCCTACAGGGGTATCTCGGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTATC
50484009 CTACAAGG
66 CTACAAGG
50484017 TTATTTTGGT
Statistics
Matches: 128, Mismatches: 25, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 21 0.16
81 107 0.84
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATCTCGGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTATC
CTACAAGGGCATTTCA
Found at i:50484032 original size:27 final size:27
Alignment explanation
Indices: 50483782--50484140 Score: 214
Period size: 27 Copynumber: 13.4 Consensus size: 27
50483772 AAACAGTAAT
* *
50483782 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
50483809 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
50483836 GGTAATTCTATCCTATAAGGGCATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * * *
50483863 AGTAATTCTACCCTACAGGGGTGTCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
50483890 AGT-ATTTCTACCCTATAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
50483917 GAT-ATTTCTATCCTACAGGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
50483944 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
50483971 GGT-ATTTCTACCCTACAA-GGTA-TTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
50483996 TGGTACTTTTACCCTACAAGGTTATTTT
1 -GGTAATTTTACCCTACAAGGGTATTTC
** **
50484024 GGTAATTTTA-CAAATTGAGGGTATTTC
1 GGTAATTTTACCCTA-CAAGGGTATTTC
* ** * *
50484051 AGTAATTTTACAAT-CAATGATATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
** *
50484077 GGTAATTTTA-CAAATCGAGGGTATTTC
1 GGTAATTTTACCCTA-CAAGGGTATTTC
* ** * * *
50484104 AGTAATTTTACAAT-CGATGATATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
50484130 GGTAATTTTAC
1 GGTAATTTTAC
50484141 AAATCAAGGA
Statistics
Matches: 257, Mismatches: 63, Indels: 25
0.74 0.18 0.07
Matches are distributed among these distances:
25 4 0.02
26 62 0.24
27 184 0.72
28 7 0.03
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:50484081 original size:26 final size:27
Alignment explanation
Indices: 50484018--50484196 Score: 184
Period size: 27 Copynumber: 6.7 Consensus size: 27
50484008 CCTACAAGGT
* * *
50484018 TATTTTGGTAATTTTACAAATTGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGA
* * *
50484045 TATTTCAGTAATTTTAC-AATCAATGA
1 TATTTCGGTAATTTTACAAATCGAGGA
*
50484071 TATTTCGGTAATTTTACAAATCGAGGG
1 TATTTCGGTAATTTTACAAATCGAGGA
* *
50484098 TATTTCAGTAATTTTAC-AATCGATGA
1 TATTTCGGTAATTTTACAAATCGAGGA
*
50484124 TATTTCGGTAATTTTACAAATCAAGGA
1 TATTTCGGTAATTTTACAAATCGAGGA
* * * * * *
50484151 TATTTGGGTAGTTTTATAAACCGGGGG
1 TATTTCGGTAATTTTACAAATCGAGGA
50484178 TACTTT-GGTAATTTTACAA
1 TA-TTTCGGTAATTTTACAA
50484197 CTGGGGGTAT
Statistics
Matches: 124, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 44 0.35
27 77 0.62
28 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCGAGGA
Found at i:50484166 original size:53 final size:53
Alignment explanation
Indices: 50484018--50484155 Score: 231
Period size: 53 Copynumber: 2.6 Consensus size: 53
50484008 CCTACAAGGT
* *
50484018 TATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCAATGA
1 TATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAATGA
*
50484071 TATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGATGA
1 TATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAATGA
* *
50484124 TATTTCGGTAATTTTACAAATCAAGGATATTT
1 TATTTCGGTAATTTTACAAATCGAGGGTATTT
50484156 GGGTAGTTTT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 80 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.42
Consensus pattern (53 bp):
TATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAATGA
Found at i:50484179 original size:80 final size:79
Alignment explanation
Indices: 50484025--50484217 Score: 219
Period size: 80 Copynumber: 2.4 Consensus size: 79
50484015 GGTTATTTTG
* * *
50484025 GTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCAATGATATTTCGGTAATTTTACAA
1 GTAATTTTAC-AATCGAGGATATTTCAGTAATTTTACAATCAAGGATATTTCGGTAATTTTACAA
*
50484090 ATCGAGGGTA-TTTCA
65 ACCGAGGGTACTTT-A
* * * * *
50484105 GTAATTTTACAATCGATGATATTTCGGTAATTTTACAAATCAAGGATATTTGGGTAGTTTTATAA
1 GTAATTTTACAATCGAGGATATTTCAGTAATTTTAC-AATCAAGGATATTTCGGTAATTTTACAA
* *
50484170 ACCGGGGGTACTTTG
65 ACCGAGGGTACTTTA
* *
50484185 GTAATTTTACAA-CTGGGGGTATTTCAGTAATTT
1 GTAATTTTACAATC-GAGGATATTTCAGTAATTT
50484218 GGTAAACTAA
Statistics
Matches: 95, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
79 23 0.24
80 69 0.73
81 3 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (79 bp):
GTAATTTTACAATCGAGGATATTTCAGTAATTTTACAATCAAGGATATTTCGGTAATTTTACAAA
CCGAGGGTACTTTA
Found at i:50486193 original size:18 final size:18
Alignment explanation
Indices: 50486172--50486206 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
50486162 AAACATTATC
50486172 AGAACTAGAATCAAAATG
1 AGAACTAGAATCAAAATG
*
50486190 AGAATTAGAATCAAAAT
1 AGAACTAGAATCAAAAT
50486207 CAGGTGACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.09, G:0.14, T:0.20
Consensus pattern (18 bp):
AGAACTAGAATCAAAATG
Found at i:50486223 original size:25 final size:25
Alignment explanation
Indices: 50486190--50486252 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
50486180 AATCAAAATG
*
50486190 AGAATTAGAATCAAAATCAGGTGAC
1 AGAATTAGAATCAAAATCAGGTAAC
* *
50486215 AGAATTAGAATCAATATCAGGTAAT
1 AGAATTAGAATCAAAATCAGGTAAC
50486240 AGAATTAGAATCA
1 AGAATTAGAATCA
50486253 GAATGTGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24
Consensus pattern (25 bp):
AGAATTAGAATCAAAATCAGGTAAC
Found at i:50486403 original size:26 final size:27
Alignment explanation
Indices: 50486374--50486453 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 27
50486364 AACATGGCTG
* *
50486374 CCAGAACAGATATTGTGA-TAGAGTCA
1 CCAGAACAGATATTGTGAGCAGAGCCA
50486400 CCAGATACAGATATTGT-AGCAGAGCCA
1 CCAGA-ACAGATATTGTGAGCAGAGCCA
* * *
50486427 CCAAAACAGATAATGTG-GCAAAGCCA
1 CCAGAACAGATATTGTGAGCAGAGCCA
50486453 C
1 C
50486454 TTAACAGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
26 25 0.54
27 21 0.46
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATATTGTGAGCAGAGCCA
Found at i:50486638 original size:22 final size:22
Alignment explanation
Indices: 50486612--50486677 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
50486602 GCAAATACGT
*
50486612 TTGGCATACAGCCATAATCAGA
1 TTGGCATAAAGCCATAATCAGA
* * *
50486634 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCATAAAGCCATAAT-CAGA
*
50486656 TTGGCACAAAGCCATAATCAGA
1 TTGGCATAAAGCCATAATCAGA
50486678 AGGCTTTAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (22 bp):
TTGGCATAAAGCCATAATCAGA
Found at i:50487135 original size:27 final size:27
Alignment explanation
Indices: 50487105--50487437 Score: 239
Period size: 27 Copynumber: 12.4 Consensus size: 27
50487095 GGGCAAAATA
* *
50487105 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
* *
50487132 GTAATTCTACCATACAAGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
* * * * * *
50487159 GTAATTCTATCCTATAGGGGCATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCG
* * *
50487186 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
*
50487213 GT-ATTTCTACCCTACACGGGTATTTCG
1 GTAATTT-TACCCTACAAGGGTATTTCG
* * *
50487240 GT-ATTTCTATCCTACAGGGGTATTTCA
1 GTAATTT-TACCCTACAAGGGTATTTCG
* * * *
50487267 GTAATTCTACCTTATAGGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
* *
50487294 AT-ATTTCTACCCTACAAGGGTATTTTG
1 GTAATTT-TACCCTACAAGGGTATTTCG
50487321 GT-ATTTCTACCCTACAAGGGTATTTCG
1 GTAATTT-TACCCTACAAGGGTATTTCG
** ** *
50487348 GTAATTTTACAAATTGAA-GGTATTTCA
1 GTAATTTTAC-CCTACAAGGGTATTTCG
** * *
50487375 GTAATTTTACAAT-CAATGATATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCG
** * *
50487401 GTAATTTTA-CAAATCGAGGGTATTTCA
1 GTAATTTTACCCTA-CAAGGGTATTTCG
50487428 GTAATTTTAC
1 GTAATTTTAC
50487438 AATCGACGGT
Statistics
Matches: 249, Mismatches: 48, Indels: 17
0.79 0.15 0.05
Matches are distributed among these distances:
25 3 0.01
26 25 0.10
27 211 0.85
28 10 0.04
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATTTCG
Found at i:50487352 original size:81 final size:81
Alignment explanation
Indices: 50487104--50487353 Score: 338
Period size: 81 Copynumber: 3.1 Consensus size: 81
50487094 GGGGCAAAAT
* * * * * * *
50487104 AGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCATACAAGGGTATTTCGGTAATTCTAT
1 AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTAT
* *
50487169 CCTATAGGGGCATTTC
66 CCTACAGGGGTATTTC
* *
50487185 AATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACACGGGTATTTCGGTATTTCTAT
1 AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTAT
50487250 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * * * *
50487266 AGTAATTCTACCTTATAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTTGGTATTTCTAC
1 AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTAT
*
50487331 CCTACAAGGGTATTTC
66 CCTACAGGGGTATTTC
*
50487347 GGTAATT
1 AGTAATT
50487354 TTACAAATTG
Statistics
Matches: 149, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 149 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTAT
CCTACAGGGGTATTTC
Found at i:50487403 original size:53 final size:53
Alignment explanation
Indices: 50487341--50487466 Score: 189
Period size: 53 Copynumber: 2.4 Consensus size: 53
50487331 CCTACAAGGG
* *
50487341 TATTTCGGTAATTTTACAAATTGAAGGTATTTCAGTAATTTTACAATCAATGA
1 TATTTCGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAATCAACGA
* * *
50487394 TATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACGG
1 TATTTCGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAATCAACGA
* *
50487447 TATTTCGATAAATTTACAAA
1 TATTTCGGTAATTTTACAAA
50487467 ACAAGGATAT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 66 1.00
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.40
Consensus pattern (53 bp):
TATTTCGGTAATTTTACAAATCGAAGGTATTTCAGTAATTTTACAATCAACGA
Found at i:50487432 original size:80 final size:81
Alignment explanation
Indices: 50487337--50487519 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
50487327 CTACCCTACA
* * * *
50487337 AGGGTATTTCGGTAATTTTACAAATTGAAGGTATTTC-AGTAATTTTAC-AATCAATGATATTTC
1 AGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCGA-TAAATTTACAAAACAAGGATATTTC
*
50487400 GGTAATTTTACAAATCG
65 GGTAATTTTACAAACCG
* * *
50487417 AGGGTATTTCAGTAATTTTAC-AATCGACGGTATTTCGATAAATTTACAAAACAAGGATATTTGG
1 AGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCGATAAATTTACAAAACAAGGATATTTCG
* *
50487481 GTAGTTTTATAAACCG
66 GTAATTTTACAAACCG
*
50487497 GGGGTACTTT-GGTAATTTTACAA
1 AGGGTA-TTTCGGTAATTTTACAA
50487520 CTGGGGGTAT
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
79 21 0.24
80 62 0.71
81 4 0.05
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCGATAAATTTACAAAACAAGGATATTTCG
GTAATTTTACAAACCG
Found at i:50487438 original size:27 final size:27
Alignment explanation
Indices: 50487337--50487519 Score: 174
Period size: 27 Copynumber: 6.9 Consensus size: 27
50487327 CTACCCTACA
*
50487337 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
50487364 AAGGTATTTCAGTAATTTTAC-AATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
50487390 ATGATATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
50487417 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * * *
50487443 ACGGTATTTCGATAAATTTACAAAACA
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * * *
50487470 AGGATATTTGGGTAGTTTTATAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
50487497 GGGGTACTTT-GGTAATTTTACAA
1 AGGGTA-TTTCGGTAATTTTACAA
50487520 CTGGGGGTAT
Statistics
Matches: 123, Mismatches: 30, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
26 43 0.35
27 77 0.63
28 3 0.02
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:50493657 original size:46 final size:46
Alignment explanation
Indices: 50493576--50493666 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
50493566 TATATATACA
* * ** *
50493576 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCAGCTTTACCAAATATC
* * *
50493622 CATCTCATACACATTTCGCATTAACCATTCAGCTTTCCCAAATAT
1 CATCTCATACACATCTCACATTAACCATTCAGCTTTACCAAATAT
50493667 ATACACTTCC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.30, C:0.31, G:0.05, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCAGCTTTACCAAATATC
Found at i:50493715 original size:47 final size:47
Alignment explanation
Indices: 50493680--50493971 Score: 440
Period size: 47 Copynumber: 6.2 Consensus size: 47
50493670 CACTTCCACG
*
50493680 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
50493727 TTTATCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
50493774 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
50493821 TTCATCACATTGGCCATTCGGCCTTATCACATATGTACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
50493868 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * **
50493915 TTCATCACATTTGCCATTCGGCCTTAGCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
50493962 TCCATCACAT
1 TTCATCACAT
50493972 AAAATCCTAA
Statistics
Matches: 221, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 221 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:50496972 original size:43 final size:42
Alignment explanation
Indices: 50496924--50497033 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 42
50496914 TCCTAGACGT
*
50496924 GGTCTTACATGTAATCACATATCGATGCC-ACTATCCCAGACAG
1 GGTCTTACA-GAAATCACATATCGATGCCGA-TATCCCAGACAG
* * *
50496967 GGTCTTACACAAATCACATATACGATGCCGATGTCCCAGACAT
1 GGTCTTACAGAAATCACATAT-CGATGCCGATATCCCAGACAG
*
50497010 GGTCTTACACGCAATCACATATCG
1 GGTCTTACA-GAAATCACATATCG
50497034 TAAATCCTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
42 10 0.17
43 37 0.64
44 11 0.19
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (42 bp):
GGTCTTACAGAAATCACATATCGATGCCGATATCCCAGACAG
Found at i:50514643 original size:55 final size:51
Alignment explanation
Indices: 50514534--50514652 Score: 130
Period size: 55 Copynumber: 2.3 Consensus size: 51
50514524 CGATATGGCT
* * *
50514534 GTGGTCGAGCCTGCCAAAACAACACGGGCGACATGCCCGTGTGGAAGAACC
1 GTGGTCGAGCCTGCCAAAACAACACGGGCGACACGCCCGTGTGAAACAACC
* * * *
50514585 GTGGTTGAGCCTGCCAAAACAGCATGGGCGTTCGACACGCCCGTGTGAAACACCC
1 GTGGTCGAGCCTGCCAAAACAACA-CGG-G--CGACACGCCCGTGTGAAACAACC
*
50514640 GTGGTCGAACCTG
1 GTGGTCGAGCCTG
50514653 TTAAATTAAC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
51 22 0.40
52 2 0.04
53 1 0.02
55 30 0.55
ACGTcount: A:0.24, C:0.29, G:0.31, T:0.15
Consensus pattern (51 bp):
GTGGTCGAGCCTGCCAAAACAACACGGGCGACACGCCCGTGTGAAACAACC
Found at i:50522136 original size:15 final size:15
Alignment explanation
Indices: 50522107--50522156 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
50522097 CAAAGATAAC
*
50522107 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
50522121 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
50522136 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
50522151 AAGAAA
1 AAGAAA
50522157 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:50522165 original size:15 final size:15
Alignment explanation
Indices: 50522118--50522165 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
50522108 AGAAAACCGA
50522118 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
50522132 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
50522148 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
50522163 ATA
1 ATA
50522166 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:50537028 original size:13 final size:13
Alignment explanation
Indices: 50537010--50537035 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50537000 AAGAAATCCA
50537010 ACACGGGCGTGTC
1 ACACGGGCGTGTC
50537023 ACACGGGCGTGTC
1 ACACGGGCGTGTC
50537036 CTTGTTGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:50541747 original size:64 final size:64
Alignment explanation
Indices: 50541646--50541772 Score: 227
Period size: 64 Copynumber: 2.0 Consensus size: 64
50541636 TACAGTTATA
* * *
50541646 GTTTGTTCCAATTAGATTAATGTTGTAATGTATTTAATTTATATAACAAAATTTATATTACAAT
1 GTTTGTTCCAATTAAATTAATATTGTAATGTATTTAATTTATATAACAAAATTTAAATTACAAT
50541710 GTTTGTTCCAATTAAATTAATATTGTAATGTATTTAATTTATATAACAAAATTTAAATTACAA
1 GTTTGTTCCAATTAAATTAATATTGTAATGTATTTAATTTATATAACAAAATTTAAATTACAA
50541773 AACTAAGTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (64 bp):
GTTTGTTCCAATTAAATTAATATTGTAATGTATTTAATTTATATAACAAAATTTAAATTACAAT
Found at i:50542294 original size:33 final size:33
Alignment explanation
Indices: 50542257--50542325 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
50542247 CCATAATGTG
* *
50542257 GTGGACACTGGCCGGGAGGAATGCTGTACTGCA
1 GTGGACACGGGCCGGGAGGAATGCTGTACTACA
*
50542290 GTGGATACGGGCCGGGAGGAATGCTGTACTACA
1 GTGGACACGGGCCGGGAGGAATGCTGTACTACA
50542323 GTG
1 GTG
50542326 AATACGACCC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.41, T:0.19
Consensus pattern (33 bp):
GTGGACACGGGCCGGGAGGAATGCTGTACTACA
Found at i:50542331 original size:33 final size:33
Alignment explanation
Indices: 50542266--50542331 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
50542256 GGTGGACACT
* *
50542266 GGCCGGGAGGAATGCTGTACTGCAGTGGATACG
1 GGCCGGGAGGAATGCTGTACTACAGTGAATACG
50542299 GGCCGGGAGGAATGCTGTACTACAGTGAATACG
1 GGCCGGGAGGAATGCTGTACTACAGTGAATACG
50542332 ACCCAAAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.24, C:0.18, G:0.39, T:0.18
Consensus pattern (33 bp):
GGCCGGGAGGAATGCTGTACTACAGTGAATACG
Found at i:50544536 original size:40 final size:40
Alignment explanation
Indices: 50544474--50544718 Score: 379
Period size: 40 Copynumber: 6.2 Consensus size: 40
50544464 AAACCAAGTA
* * *
50544474 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
50544513 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50544553 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50544593 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50544633 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
50544673 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50544713 CCTTCG
1 CCTTCG
50544719 TTATCATCCG
Statistics
Matches: 193, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 16 0.08
40 177 0.92
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50550390 original size:40 final size:40
Alignment explanation
Indices: 50550320--50550574 Score: 363
Period size: 40 Copynumber: 6.4 Consensus size: 40
50550310 AAGCCAAGTA
* * * * *
50550320 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
50550359 CCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
50550399 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50550439 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50550479 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
50550519 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50550559 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
50550575 TGGTTATCAT
Statistics
Matches: 197, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 13 0.07
40 184 0.93
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50555686 original size:27 final size:27
Alignment explanation
Indices: 50555651--50555703 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
50555641 AATGGGTGTA
*
50555651 ATTAATCAAAAGATAAATCTTTTGATC
1 ATTAATCAAAAGATAAATCATTTGATC
* * *
50555678 ATTAGTCAAAAGTTATATCATTTGAT
1 ATTAATCAAAAGATAAATCATTTGAT
50555704 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (27 bp):
ATTAATCAAAAGATAAATCATTTGATC
Found at i:50562733 original size:48 final size:46
Alignment explanation
Indices: 50562613--50562733 Score: 154
Period size: 46 Copynumber: 2.6 Consensus size: 46
50562603 TGATATGTGT
* *
50562613 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAA
* *
50562659 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATG-A-AA
* *
50562707 GCTAGTGTAAGACCTATCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
50562734 GCGTTAGCTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 38 0.58
47 2 0.03
48 25 0.38
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAA
Found at i:50562812 original size:49 final size:47
Alignment explanation
Indices: 50562616--50562881 Score: 190
Period size: 49 Copynumber: 5.6 Consensus size: 47
50562606 TATGTGTGCT
* * *
50562616 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCC-CTATGATGAGAGCC
* * * * *
50562662 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA-GATGTACAAGCT
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCC-CTATGATG-A-GAGCC
* ** * * *
50562710 AGTGTAAGACCTATCTGGGACATGGCGTTAG--CT-TGTTGAGTGTC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCCCTATGATGAGAGCC
*
50562754 AGTGTAAGACCTATTTGGGACATGGCATCGGCACCTATAGATGAGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGC-CCTAT-GATGAGAGCC
* * * * *
50562803 AGTGTAAGACCTATTTGGGACACGGCATCGGCCTCGATAT-AAGAAAGTC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCC-C--TATGATGAGAGCC
*
50562852 AGTGTAAGACCTGTCTGGGACACT-GCATCG
1 AGTGTAAGACCTATCTGGGACA-TGGCATCG
50562882 ACTTTGATGT
Statistics
Matches: 177, Mismatches: 29, Indels: 25
0.77 0.13 0.11
Matches are distributed among these distances:
44 28 0.16
45 1 0.01
46 40 0.23
47 4 0.02
48 26 0.15
49 75 0.42
51 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCTATCTGGGACATGGCATCGGCCCTATGATGAGAGCC
Found at i:50562869 original size:142 final size:138
Alignment explanation
Indices: 50562616--50562873 Score: 326
Period size: 142 Copynumber: 1.8 Consensus size: 138
50562606 TATGTGTGCT
* * *
50562616 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATATCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACATATCTGGG
*
50562681 ACATGCATCGGCCTCGAGATGTACAAGCTAGTGTAAGACCTATCTGGGACATGGCGTTAGCTTGT
66 ACAGGCATCGGCCTCGAGATGTACAAGCTAGTGTAAGACCTATCTGGGACATGGCGTTAGCTTGT
50562746 TGAGTGTC
131 TGAGTGTC
* * * *
50562754 AGTGTAAGACCTATTTGGGACATGGCATCGG-CACCTATAGATGAGAGCCAGTGTAAGACCTATT
1 AGTGTAAGACATATCTGGGACAT-GCATCGGCCA-C-AT-GATGAGAGCCAGTGTAAGACATATC
* *
50562818 TGGGACACGGCATCGGCCTCGATATAAG-A-AAG-TCAGTGTAAGACCTGTCTGGGACA
62 TGGGACA-GGCATCGGCCTCGAGAT--GTACAAGCT-AGTGTAAGACCTATCTGGGACA
50562874 CTGCATCGAC
Statistics
Matches: 102, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
138 22 0.22
139 8 0.08
140 2 0.02
141 29 0.28
142 39 0.38
143 1 0.01
144 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (138 bp):
AGTGTAAGACATATCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACATATCTGGG
ACAGGCATCGGCCTCGAGATGTACAAGCTAGTGTAAGACCTATCTGGGACATGGCGTTAGCTTGT
TGAGTGTC
Found at i:50571276 original size:48 final size:48
Alignment explanation
Indices: 50571208--50571580 Score: 593
Period size: 48 Copynumber: 7.8 Consensus size: 48
50571198 CAAGATAAAT
* * *
50571208 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
*
50571256 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* * * * *
50571304 ATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* *
50571352 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
50571400 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
*
50571448 ATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* ** * *
50571496 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATACGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
50571544 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
50571581 TGTTGTAACA
Statistics
Matches: 302, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 302 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
Found at i:50571674 original size:37 final size:37
Alignment explanation
Indices: 50571624--50571726 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
50571614 GGAAATGTAT
50571624 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
50571661 TCCGGGTTAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
50571698 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
50571727 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:50573988 original size:40 final size:40
Alignment explanation
Indices: 50573679--50573976 Score: 461
Period size: 40 Copynumber: 7.5 Consensus size: 40
50573669 GTATAGCCGA
* *
50573679 GCTAAGTCCCGAAGAGCATTCGAGCTAGTGATGTATCCGT
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* *
50573719 GTTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
*
50573759 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAACCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
50573799 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
*
50573839 GTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* * *
50573879 GCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGT
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
** * * *
50573919 GCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
*
50573959 GCTAGGTCCCGAAGAGCA
1 GCTAAGTCCCGAAGAGCA
50573977 ATCATGCTGG
Statistics
Matches: 236, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 236 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
Found at i:50574997 original size:126 final size:124
Alignment explanation
Indices: 50574759--50575006 Score: 259
Period size: 126 Copynumber: 2.0 Consensus size: 124
50574749 GGGGAAGAGT
* * *
50574759 TGTGACAGCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACAAAACCGAGTCATAAAA
1 TGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCACAAAACCGAGTCACAAAA
** * **
50574824 ATAATTAACCATTATATTTGATGCTTATTATATGTATATAGGCATGTGTGAAAATTTCATG
66 ATAATTAA-CATTATATTTGATGCTTAAAATATGTATATA-GAATGTGCAAAAATTTCATG
* * * * *
50574885 TGTGACAGCCCTATAGTGACCGTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAA
1 TGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCACAAAACCGAGTCACAAAA
* * * *
50574950 TTATTTGA-ATGTGATATTT-ATGGTCTAAAATATGTGAGTAT-GAATGTGCAAAAATTT
66 ATAATTAACAT-T-ATATTTGATGCT-TAAAATATGT-A-TATAGAATGTGCAAAAATTT
50575007 TAAGCTTCGA
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
124 2 0.02
125 5 0.05
126 89 0.89
127 1 0.01
128 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (124 bp):
TGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCACAAAACCGAGTCACAAAA
ATAATTAACATTATATTTGATGCTTAAAATATGTATATAGAATGTGCAAAAATTTCATG
Found at i:50576743 original size:40 final size:40
Alignment explanation
Indices: 50576683--50576763 Score: 128
Period size: 40 Copynumber: 2.0 Consensus size: 40
50576673 TCCGGGCTTG
*
50576683 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
50576723 GTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTT
1 GTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
50576763 G
1 G
50576764 AACGAGTAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 36 0.95
41 2 0.05
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
Found at i:50675129 original size:47 final size:45
Alignment explanation
Indices: 50675016--50675240 Score: 158
Period size: 46 Copynumber: 4.9 Consensus size: 45
50675006 AGGTTATTGT
*
50675016 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATATGATGA
* * *
50675062 GAGCCAGTGTAAGACCATGTCTTGGATATGGCATCGGCAT-TGA-GA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATATGATGA
* *
50675107 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACAT-A
1 -GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-ATG--ATGA
* *** * *
50675157 -AGCTAGTGTAAGACAAGTCTCAAACATGCATCGAC-TACGA-GA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATATGATGA
* *
50675199 G-GTGTCAGTGTAAGACCATGTCTGGGACAATGCATCGACATA
1 GAG-CT-AGTGTAAGA-CATGTCTGGGAC-ATGCATCGGCATA
50675241 GATATGCCAG
Statistics
Matches: 142, Mismatches: 20, Indels: 33
0.73 0.10 0.17
Matches are distributed among these distances:
42 3 0.02
43 1 0.01
44 11 0.08
45 11 0.08
46 65 0.46
47 29 0.20
48 20 0.14
50 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATATGATGA
Found at i:50686587 original size:20 final size:20
Alignment explanation
Indices: 50686562--50686604 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
50686552 TGCGTCAGTA
50686562 TTGATTTGTTATTCTAGAAC
1 TTGATTTGTTATTCTAGAAC
50686582 TTGATTTGTTATTCTAGAAC
1 TTGATTTGTTATTCTAGAAC
50686602 TTG
1 TTG
50686605 CTTGATTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.09, G:0.16, T:0.51
Consensus pattern (20 bp):
TTGATTTGTTATTCTAGAAC
Found at i:50686613 original size:20 final size:20
Alignment explanation
Indices: 50686562--50686613 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
50686552 TGCGTCAGTA
*
50686562 TTGATTTGTTATTCTAGAAC
1 TTGACTTGTTATTCTAGAAC
*
50686582 TTGATTTGTTATTCTAGAAC
1 TTGACTTGTTATTCTAGAAC
50686602 TTG-CTTGATTAT
1 TTGACTTG-TTAT
50686614 GCATGTCAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 3 0.10
20 27 0.90
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.52
Consensus pattern (20 bp):
TTGACTTGTTATTCTAGAAC
Found at i:50692886 original size:40 final size:38
Alignment explanation
Indices: 50692802--50692895 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 38
50692792 TTATGTTCGA
50692802 CACTAAGTGTGCGATTCAAACAGCTTTGGCTATAAATAG
1 CACTAAGTGTGCGATTCAAACAGCTTTGGCTAT-AATAG
* *
50692841 CACTAAGTGTGCGAGTTGAAATAGCTTTGGCTAT-ATGAGG
1 CACTAAGTGTGCGA-TTCAAACAGCTTTGGCTATAAT-A-G
*
50692881 TACTAAGTGTGCGAT
1 CACTAAGTGTGCGAT
50692896 ACCGAGATAA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
38 2 0.04
39 16 0.33
40 31 0.63
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (38 bp):
CACTAAGTGTGCGATTCAAACAGCTTTGGCTATAATAG
Found at i:50694243 original size:195 final size:195
Alignment explanation
Indices: 50693908--50694323 Score: 688
Period size: 195 Copynumber: 2.1 Consensus size: 195
50693898 CAGCCCCGAG
*
50693908 CATAGCCTAGACACACGGGCGTGTCTGGTGGCTGTGTGAGGCACACAACCTTGGTACATGGGTGT
1 CATAGCCTAGATACACGGGCGTGTCTGGTGGCTGTGTGAGGCACACAACCTTGGTACATGGGTGT
* *
50693973 GTGTGGGCATTTCTAAGGGTACACGGGCGTGTGGTCGATCGTGTGACCCAAGTCAGTTTTGACCA
66 GTGTGGCCATTTCTAAGGGTACACGGGCGTGTGGTCGACCGTGTGACCCAAGTCAGTTTTGACCA
* * * * *
50694038 AGGGCAAGACACACGGGCATGTCTTGTGGCCGTGTGGTGAAGTTAGTATGCATGTCCTGTTTTGC
131 AGGCCAAGACACACAGGCATGTCTTGTGGCCGTGTGGTGAAGTCAGTATGCATGCCCTATTTTGC
*
50694103 CATAGCCTAGATACACGGGCGTGTCTGGTGGCTGTGTGAGGCACACAGCCTTGGTACATGGGTGT
1 CATAGCCTAGATACACGGGCGTGTCTGGTGGCTGTGTGAGGCACACAACCTTGGTACATGGGTGT
*
50694168 GTGTGGCCATTTCTAAGGGTACACGGGTGTGTGGTCGACCGTGTGACCCAAGTCAGTTTTGACCA
66 GTGTGGCCATTTCTAAGGGTACACGGGCGTGTGGTCGACCGTGTGACCCAAGTCAGTTTTGACCA
* * *
50694233 TGGCCAAGACACACAGGCATGTCTTGTGGCTGTGTGGTGAAGTCAGTATGTATGCCCTATTTTGC
131 AGGCCAAGACACACAGGCATGTCTTGTGGCCGTGTGGTGAAGTCAGTATGCATGCCCTATTTTGC
* * *
50694298 CACAGCCTAGATACATGGGTGTGTCT
1 CATAGCCTAGATACACGGGCGTGTCT
50694324 AATTCCATGT
Statistics
Matches: 205, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
195 205 1.00
ACGTcount: A:0.19, C:0.21, G:0.33, T:0.27
Consensus pattern (195 bp):
CATAGCCTAGATACACGGGCGTGTCTGGTGGCTGTGTGAGGCACACAACCTTGGTACATGGGTGT
GTGTGGCCATTTCTAAGGGTACACGGGCGTGTGGTCGACCGTGTGACCCAAGTCAGTTTTGACCA
AGGCCAAGACACACAGGCATGTCTTGTGGCCGTGTGGTGAAGTCAGTATGCATGCCCTATTTTGC
Found at i:50696194 original size:17 final size:16
Alignment explanation
Indices: 50696162--50696192 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50696152 GTTTAGGGGC
*
50696162 AAAAATTTAATTTTTG
1 AAAAATATAATTTTTG
50696178 AAAAATATAATTTTT
1 AAAAATATAATTTTT
50696193 TGGCTGAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
AAAAATATAATTTTTG
Found at i:50703701 original size:47 final size:47
Alignment explanation
Indices: 50703590--50703716 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 47
50703580 GATGTATCAA
* * * *
50703590 TGTAAGACTATGTCTGGGACATGGCGTCAGTCTCGATTTCGATAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCGTC-GACTCGA-TTAGATAGCCAG
*
50703639 TGTAAGACCATGTCTGGGACATGGCGTCGACTTGA-TAGATAAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCGTCGACTCGATTAGAT-AGCCAG
*
50703686 TGTAAGACCATGTCTGGGACATGGCATCGAC
1 TGTAAGACCATGTCTGGGACATGGCGTCGAC
50703717 ATTATACCCT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 4 0.06
47 35 0.49
48 5 0.07
49 27 0.38
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCGTCGACTCGATTAGATAGCCAG
Done.