Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 157 of 253
Found at i:50715813 original size:28 final size:28
Alignment explanation
Indices: 50715750--50715900 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
50715740 ATATTAAGTC
*
50715750 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50715777 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50715805 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50715833 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50715861 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50715890 CGCACACTTAG
1 CGCACACTTAG
50715901 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50724016 original size:28 final size:28
Alignment explanation
Indices: 50723953--50724103 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
50723943 ATATTAAGTC
*
50723953 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50723980 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50724008 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50724036 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50724064 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50724093 CGCACACTTAG
1 CGCACACTTAG
50724104 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50731642 original size:19 final size:19
Alignment explanation
Indices: 50731618--50731660 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
50731608 TGAAACGTTT
50731618 GAACCTGTAGCCAGAGTGG
1 GAACCTGTAGCCAGAGTGG
50731637 GAACCTGTAGCCAGAGTGG
1 GAACCTGTAGCCAGAGTGG
*
50731656 TAACC
1 GAACC
50731661 CATGGTGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.33, T:0.16
Consensus pattern (19 bp):
GAACCTGTAGCCAGAGTGG
Found at i:50733251 original size:32 final size:32
Alignment explanation
Indices: 50733215--50733280 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
50733205 AATGAAAGAA
* * *
50733215 AACATCTCAAAAGAATAAAGATAACAAAATAT
1 AACATCTCAAAAAAATAAAAATAACAAAACAT
*
50733247 AACATCTCAAAAAAATAAAAATAATAAAACAT
1 AACATCTCAAAAAAATAAAAATAACAAAACAT
50733279 AA
1 AA
50733281 AGAAAACCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.67, C:0.12, G:0.03, T:0.18
Consensus pattern (32 bp):
AACATCTCAAAAAAATAAAAATAACAAAACAT
Found at i:50737890 original size:15 final size:16
Alignment explanation
Indices: 50737849--50737896 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
50737839 GTTTGGTGCC
50737849 CGTGTGTAACACACGG
1 CGTGTGTAACACACGG
* * *
50737865 CCTG-GTTACAC-GGG
1 CGTGTGTAACACACGG
50737879 CGTGTGTAACACACGG
1 CGTGTGTAACACACGG
50737895 CG
1 CG
50737897 ACCTTAATAG
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
14 5 0.21
15 12 0.50
16 7 0.29
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.19
Consensus pattern (16 bp):
CGTGTGTAACACACGG
Found at i:50738762 original size:14 final size:15
Alignment explanation
Indices: 50738740--50738769 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
50738730 AAAGAAGAAG
50738740 TGGTGAAGAAAATGA
1 TGGTGAAGAAAATGA
50738755 TGGT-AAGAAAATGA
1 TGGTGAAGAAAATGA
50738769 T
1 T
50738770 TAGTGGATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (15 bp):
TGGTGAAGAAAATGA
Found at i:50741082 original size:28 final size:26
Alignment explanation
Indices: 50741033--50741084 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
50741023 AAGTTGCTAG
*
50741033 AAATAATGCGGTAATCTGCCAAAATC
1 AAATAATGCGGTAATCTACCAAAATC
*
50741059 AAATAAATGTGGTCAATCTACCAAAA
1 AAAT-AATGCGGT-AATCTACCAAAA
50741085 CAGATATGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 7 0.32
28 11 0.50
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.23
Consensus pattern (26 bp):
AAATAATGCGGTAATCTACCAAAATC
Found at i:50743002 original size:16 final size:16
Alignment explanation
Indices: 50742978--50743010 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50742968 ATAAGATCAA
*
50742978 ATTAGGATCTCACCAT
1 ATTAAGATCTCACCAT
50742994 ATTAAGATCTCACCAT
1 ATTAAGATCTCACCAT
50743010 A
1 A
50743011 ATGCTAGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.30
Consensus pattern (16 bp):
ATTAAGATCTCACCAT
Found at i:50749370 original size:68 final size:68
Alignment explanation
Indices: 50749261--50749396 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
50749251 TGACCGAGTA
50749261 TGAGCGCTGTGTTCAATTTGAGGATGGTCTCAGGGATAGTTTGCGAGTCTTGATAGCTTTGTAGA
1 TGAGCGCTGTGTTCAATTTGAGGATGGTCTCAGGGATAGTTTGCGAGTCTTGATAGCTTTGTAGA
50749326 GAG
66 GAG
*
50749329 TGAGCGCTGTGTTCAATTTGAGGATGGTCTTAGGGATAGTTTGCGAGTCTTGATAGCTTTGTAGA
1 TGAGCGCTGTGTTCAATTTGAGGATGGTCTCAGGGATAGTTTGCGAGTCTTGATAGCTTTGTAGA
50749394 GAG
66 GAG
50749397 AGCATGACTT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.21, C:0.11, G:0.34, T:0.35
Consensus pattern (68 bp):
TGAGCGCTGTGTTCAATTTGAGGATGGTCTCAGGGATAGTTTGCGAGTCTTGATAGCTTTGTAGA
GAG
Found at i:50750502 original size:29 final size:29
Alignment explanation
Indices: 50750469--50750546 Score: 138
Period size: 29 Copynumber: 2.7 Consensus size: 29
50750459 ACACCAATAT
50750469 CGCAGCAAAGCTGCCAGTAATAATGATAA
1 CGCAGCAAAGCTGCCAGTAATAATGATAA
50750498 CGCAGCAAAGCTGCCAGTAATAATGATAA
1 CGCAGCAAAGCTGCCAGTAATAATGATAA
**
50750527 CGCAGCGTAGCTGCCAGTAA
1 CGCAGCAAAGCTGCCAGTAA
50750547 CAGTAAGTGT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (29 bp):
CGCAGCAAAGCTGCCAGTAATAATGATAA
Found at i:50776002 original size:37 final size:37
Alignment explanation
Indices: 50775939--50776010 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
50775929 AGCTCAGATG
* *
50775939 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACA
*
50775976 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCAGGTCTTACCCGGA
50776011 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCAGGTCTTACCCGGACA
Found at i:50776360 original size:50 final size:48
Alignment explanation
Indices: 50776157--50776786 Score: 969
Period size: 48 Copynumber: 13.0 Consensus size: 48
50776147 ACACATCGCC
*
50776157 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
50776205 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
50776257 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
50776305 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
50776355 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
50776405 TATATATTTCGCATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
50776453 TACATATTTCACATTAGCCATTCGGCTTTACCAC--ATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
50776499 TACATATTTCATATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
50776547 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
50776595 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
50776645 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
50776693 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
50776741 TACATATTTCACTTTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
50776787 TATGCATCAA
Statistics
Matches: 548, Mismatches: 22, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
46 44 0.08
48 318 0.58
49 1 0.00
50 141 0.26
51 1 0.00
52 43 0.08
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:50776407 original size:98 final size:96
Alignment explanation
Indices: 50776157--50776786 Score: 969
Period size: 98 Copynumber: 6.5 Consensus size: 96
50776147 ACACATCGCC
* *
50776157 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
50776222 CCATTCGGCTTTACCACATATACATATCTCATATA
66 CCATTCGGCTTTACCACATATACATATCTC----A
* * *
50776257 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATATATATTTCACATTA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
50776321 GCCATTCGGCTTTACCACATATACATATCTCATA
65 GCCATTCGGCTTTACCACATATACATATCTC--A
* * *
50776355 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCGCATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
*
50776420 AGCCATTCGACTTTACCACATATACATATCTCA
64 AGCCATTCGGCTTTACCACATATACATATCTCA
* *
50776453 TACATATTTCACATTAGCCATTCGGCTTTACCAC--ATGCATATCTCATACATATTTCATATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
50776516 CCATTCGGCTTTACCACATATGCATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
*
50776547 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
50776612 CCATTCGGCTTTACCACATATACATATCTCATA
66 CCATTCGGCTTTACCACATATACATATCTC--A
* * * * *
50776645 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATATATTTCGCATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
50776710 CCATTCGGCTTTACCACATATACATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
*
50776741 TACATATTTCACTTTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
50776787 TATGCATCAA
Statistics
Matches: 495, Mismatches: 27, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
94 78 0.16
96 110 0.22
98 171 0.35
99 2 0.00
100 134 0.27
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.37
Consensus pattern (96 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCA
Found at i:50785929 original size:13 final size:13
Alignment explanation
Indices: 50785911--50785938 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50785901 GAAGCACGAT
50785911 TCACACGGGCATG
1 TCACACGGGCATG
50785924 TCACACGGGCATG
1 TCACACGGGCATG
50785937 TC
1 TC
50785939 CCTACCGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (13 bp):
TCACACGGGCATG
Found at i:50787550 original size:16 final size:16
Alignment explanation
Indices: 50787519--50787548 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
50787509 TGAATGCCTC
50787519 TTTTTTAAAATATTTA
1 TTTTTTAAAATATTTA
50787535 TTTTTT-AAATATTT
1 TTTTTTAAAATATTT
50787549 TACTTTGCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTTTAAAATATTTA
Found at i:50787831 original size:3 final size:3
Alignment explanation
Indices: 50787823--50787861 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
50787813 ATCATTGTCA
*
50787823 CAT CAT CAT CAT TAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
50787862 AATTACTACA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36
Consensus pattern (3 bp):
CAT
Found at i:50803355 original size:46 final size:48
Alignment explanation
Indices: 50803298--50803429 Score: 135
Period size: 46 Copynumber: 2.8 Consensus size: 48
50803288 GGTGGCATGT
* * *
50803298 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGACATTGAGA-CGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATAGAC
* * * * *
50803344 GAGCTAGTGTAAGACATGTATGGGACGTGCATC-AGCCTTGGGATATAC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGA-CATTGAGATAGAC
* *
50803392 AAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACA
1 GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACA
50803430 CCGATAGATG
Statistics
Matches: 68, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 35 0.51
47 1 0.01
48 24 0.35
49 6 0.09
50 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22
Consensus pattern (48 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATAGAC
Found at i:50803477 original size:97 final size:95
Alignment explanation
Indices: 50803302--50803525 Score: 231
Period size: 97 Copynumber: 2.3 Consensus size: 95
50803292 GCATGTGAGC
* * ** * * *
50803302 CAGTGTAAGACATGTCTAGGACAT-GCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTATG
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGAGACGAGAGCCAGCGTAAGACATGTACG
* * *
50803366 GGACGTGCATCAGCCTTGGGATAT-ACAAG-
66 GGACATGCATCAGCCTCGAGATATGA-AAGT
* *
50803395 CTAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGCGTAAGACCTGT
1 C-AGTGTAAGACCTGTCTGGGACATGGCATCGACACCG--AGACGAGAGCCAGCGTAAGACATGT
*
50803460 -CGGGACATGGCATCAGCCTCGATATATGAAAGT
63 ACGGGACAT-GCATCAGCCTCGAGATATGAAAGT
* * *
50803493 CAATGTAAGACCTGTCTGGGACACGACATCGAC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC
50803526 TTTAATGTGC
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
93 1 0.01
94 21 0.19
95 10 0.09
96 6 0.06
97 68 0.63
98 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (95 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGAGACGAGAGCCAGCGTAAGACATGTACG
GGACATGCATCAGCCTCGAGATATGAAAGT
Found at i:50803483 original size:48 final size:49
Alignment explanation
Indices: 50803400--50803525 Score: 150
Period size: 48 Copynumber: 2.6 Consensus size: 49
50803390 ACAAGCTAGT
* *
50803400 GTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGC
1 GTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAAGCCAAC
* * *
50803449 GTAAGACCTGTC-GGGACATGGCATC-AGC-CTCGATATATGAAAGTCAAT
1 GTAAGACCTGTCTGGGACATGGCATCGA-CAC-CGATAGATGAAAGCCAAC
* *
50803497 GTAAGACCTGTCTGGGACACGACATCGAC
1 GTAAGACCTGTCTGGGACATGGCATCGAC
50803526 TTTAATGTGC
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
47 2 0.03
48 39 0.59
49 24 0.36
50 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.19
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAAGCCAAC
Found at i:50809077 original size:43 final size:43
Alignment explanation
Indices: 50809030--50809134 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
50809020 ATGCAACTAT
* * ** *
50809030 AGAACATAACCTTTAGCGGAACTTTTCCCACAAATTCCGTTAA
1 AGAACATGACCTTTAGCGGAACTTTTCACACAAACGCCGCTAA
* **
50809073 AGAACATGACCTCTAGCGGTGCTTTTCACACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGAACTTTTCACACAAACGCCGCTAA
*
50809116 AGAACATGATCTTTAGCGG
1 AGAACATGACCTTTAGCGG
50809135 CGTTTTTAGT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGAACTTTTCACACAAACGCCGCTAA
Found at i:50818517 original size:29 final size:29
Alignment explanation
Indices: 50818477--50818664 Score: 173
Period size: 29 Copynumber: 6.6 Consensus size: 29
50818467 CCATAACCGA
50818477 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * * ****
50818506 GCACTATCTGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * *
50818534 GCACTGTGTGTGCGAGATTGATTGTTGAA
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
*
50818563 GCACTGTGTGTACGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ** *
50818592 GCACTGTGTGTGCGAGTTCCGTAATCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * *
50818620 GCATTGTGTGTACGAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
*
50818649 GCACTATGTGTGCGAG
1 GCACTGTGTGTGCGAG
50818665 TTCCATAACC
Statistics
Matches: 119, Mismatches: 38, Indels: 4
0.74 0.24 0.02
Matches are distributed among these distances:
28 39 0.33
29 80 0.67
ACGTcount: A:0.19, C:0.16, G:0.35, T:0.30
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:50818523 original size:57 final size:57
Alignment explanation
Indices: 50818447--50818567 Score: 179
Period size: 57 Copynumber: 2.1 Consensus size: 57
50818437 AAGTGAACAT
* * * *
50818447 AGGCACTGTGTGTGTGAGTTCCATAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTATCTGTGCGAGTTCCATAACCGAGCACTGTGTGTGCGAGATCGATTGTTG
* *
50818504 AGGCACTATCTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATTGATTGTTG
1 AGGCACTATCTGTGCGAGTTCCATAACCGAGCACTGTGTGTGCGAGATCGATTGTTG
*
50818561 AAGCACT
1 AGGCACT
50818568 GTGTGTACGA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (57 bp):
AGGCACTATCTGTGCGAGTTCCATAACCGAGCACTGTGTGTGCGAGATCGATTGTTG
Found at i:50818573 original size:86 final size:86
Alignment explanation
Indices: 50818476--50818664 Score: 281
Period size: 86 Copynumber: 2.2 Consensus size: 86
50818466 TCCATAACCG
50818476 AGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTATCTGTGCGAGTTCCGTAACCGAGCACTGT
1 AGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTATCTGTGCGAGTTCCGTAACCGAGCACTGT
* *
50818541 GTGTGCGAGAT-TGATTGTTGA
66 GTGTACGAGATCAG-TTGTTGA
* * * * *
50818562 AGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAATCGAGCATTGT
1 AGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTATCTGTGCGAGTTCCGTAACCGAGCACTGT
50818627 GTGTACGAGATCAGTTGTTGA
66 GTGTACGAGATCAGTTGTTGA
* *
50818648 GGCACTATGTGTGCGAG
1 AGCACTGTGTGTGCGAG
50818665 TTCCATAACC
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 91 0.99
87 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.34, T:0.30
Consensus pattern (86 bp):
AGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTATCTGTGCGAGTTCCGTAACCGAGCACTGT
GTGTACGAGATCAGTTGTTGA
Found at i:50818644 original size:57 final size:57
Alignment explanation
Indices: 50818561--50818719 Score: 219
Period size: 57 Copynumber: 2.8 Consensus size: 57
50818551 TTGATTGTTG
* *
50818561 AAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCGTAATC
1 AAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCATAACC
* * * *
50818618 GAGCATTGTGTGTACGAGATCAGTTGTTGAGGCACTATGTGTGCGAGTTCCATAACC
1 AAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCATAACC
* * *
50818675 AAGCACTGTGTGTGCAAGATCGGTTGTTGGGGCACTAAGTGTGTG
1 AAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACT--GTGTGTG
50818720 AAATGATATC
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
57 81 0.93
59 6 0.07
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (57 bp):
AAGCACTGTGTGTACGAGATCGGTTGTTGAGGCACTGTGTGTGCGAGTTCCATAACC
Found at i:50822497 original size:48 final size:47
Alignment explanation
Indices: 50822424--50822568 Score: 159
Period size: 48 Copynumber: 3.0 Consensus size: 47
50822414 AAGAGGGTGA
* * * *
50822424 ATTGTCGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCGTCA-C
1 ATTGTCGATGCCATG-TCCAGACATGGTCTTACACTAGCTCTCAT-ATC
*
50822472 ATTGTCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTTATATC
1 ATTGTCGATGCCATGTCC-AGACATGGTCTTACACTAGCTCTCATATC
* * *
50822520 A-TGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC
1 ATTGTC-GATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATATC
50822568 A
1 A
50822569 CCCAAATATC
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
47 7 0.08
48 75 0.89
49 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (47 bp):
ATTGTCGATGCCATGTCCAGACATGGTCTTACACTAGCTCTCATATC
Found at i:50837216 original size:28 final size:28
Alignment explanation
Indices: 50837153--50837303 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
50837143 ATATTAAGTC
*
50837153 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50837180 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50837208 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
50837236 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50837264 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50837293 CGCACACTTAG
1 CGCACACTTAG
50837304 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.19
28 76 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50839226 original size:48 final size:48
Alignment explanation
Indices: 50839174--50839282 Score: 148
Period size: 48 Copynumber: 2.3 Consensus size: 48
50839164 CATATTCCAA
* *
50839174 ACATGGTCCTACATTGGCTCTCAT-TACATTGACGATGCCATGCCCCAG
1 ACATGGTCATACATTGGCTCTCATAT-CATGGACGATGCCATGCCCCAG
* * *
50839222 ACATGGTCATACATTGGCTCTCATATCGTGGTCGATGCCATGTCCCAG
1 ACATGGTCATACATTGGCTCTCATATCATGGACGATGCCATGCCCCAG
*
50839270 ACATGGTCTTACA
1 ACATGGTCATACA
50839283 CTAGCACACA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 53 0.98
49 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
ACATGGTCATACATTGGCTCTCATATCATGGACGATGCCATGCCCCAG
Found at i:50842019 original size:32 final size:33
Alignment explanation
Indices: 50841949--50842022 Score: 105
Period size: 35 Copynumber: 2.2 Consensus size: 33
50841939 TTTTATATTT
*
50841949 TTTAAATGTTTATGTAAGTTATGATAATCATAAAC
1 TTTAAATGTTTATGTAAGTTATAATAATCAT--AC
*
50841984 TTTAAATGTTTATGTAAGTTATAATTATCAT-C
1 TTTAAATGTTTATGTAAGTTATAATAATCATAC
50842016 TTTAAAT
1 TTTAAAT
50842023 ATTGACTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
32 8 0.22
35 29 0.78
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.47
Consensus pattern (33 bp):
TTTAAATGTTTATGTAAGTTATAATAATCATAC
Found at i:50844157 original size:43 final size:42
Alignment explanation
Indices: 50844034--50844157 Score: 128
Period size: 41 Copynumber: 3.0 Consensus size: 42
50844024 TCTAGCATGT
*
50844034 TGGCATCGATATGCGATTACGTGTAAGACCATGTCTGGGACA
1 TGGCATCGATATGTGATTACGTGTAAGACCATGTCTGGGACA
* * * * *
50844076 TCGACATTG-TATTTGATT-TGTGTAAGACTC-TGTGTGGGACA
1 T-GGCATCGATATGTGATTACGTGTAAGAC-CATGTCTGGGACA
* *
50844117 GTGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGA
1 -TGGCATCGATATGTGATTACGTGTAAGACCATGTCTGGGA
50844158 TGTTGGCATT
Statistics
Matches: 63, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
41 24 0.38
42 19 0.30
43 20 0.32
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (42 bp):
TGGCATCGATATGTGATTACGTGTAAGACCATGTCTGGGACA
Found at i:50844165 original size:43 final size:43
Alignment explanation
Indices: 50843999--50844166 Score: 128
Period size: 43 Copynumber: 4.0 Consensus size: 43
50843989 AGGATTTTCA
* * * * *
50843999 ATATGTGTTTTCGTGAAAGACCACGTCTAGCATGTTGGCATCG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCG
* * ** * * *
50844042 ATATGCGATTACGTGTAAGACCATGTCTGGGACATCGACATTG
1 ATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCG
* * * * *
50844085 -TATTTGATT-TGTGTAAGACTC-TGTGTGGGACAG-TGGCATCG
1 ATATGTGATTACGTGTAAGAC-CACGTCTGGGA-TGTTGGCATCG
*
50844126 ATATGTGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 ATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCAT
50844167 TGTACGATAT
Statistics
Matches: 92, Mismatches: 27, Indels: 12
0.70 0.21 0.09
Matches are distributed among these distances:
41 22 0.24
42 18 0.20
43 52 0.57
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
ATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCG
Found at i:50856909 original size:37 final size:37
Alignment explanation
Indices: 50856848--50856926 Score: 99
Period size: 37 Copynumber: 2.1 Consensus size: 37
50856838 TTATTACGAA
* * *
50856848 GTCTTACCCGGACATAATCTCCACATG-ACGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGTA-GTCATCGG
50856885 GTCTTACCCGGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCT-CCACACGTAGTCATCGG
50856922 GTCTT
1 GTCTT
50856927 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 1 0.03
37 35 0.95
38 1 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
Found at i:50857123 original size:47 final size:47
Alignment explanation
Indices: 50857047--50857449 Score: 603
Period size: 47 Copynumber: 8.5 Consensus size: 47
50857037 CTTCGGGACT
* * * * * *
50857047 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
50857094 TGTCACATATATACACTTTCACATTCATCACATCGCCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
50857141 TATCACATATATACACTTTCACATTCATCACATCTGCTATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
50857187 TCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 T-ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
50857237 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
50857284 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
50857331 TA-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
50857377 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
50857424 TATCACATATATATACACTTTCACAT
1 TATCAC--ATATATACACTTTCACAT
50857450 CCTTATTTAT
Statistics
Matches: 329, Mismatches: 20, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
46 48 0.15
47 220 0.67
49 59 0.18
50 2 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:50857238 original size:96 final size:94
Alignment explanation
Indices: 50857045--50857449 Score: 625
Period size: 96 Copynumber: 4.3 Consensus size: 94
50857035 CCCTTCGGGA
* * * * * * *
50857045 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC-CTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC-ATCACATATATACA
*
50857109 CTTTCACATTCATCACATCGCCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
* *
50857139 CTTATCACATATATACACTTTCACATTCATCACATCTGCTATTAGGCCTCATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATAC
50857204 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
50857235 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACAC
50857300 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
50857329 CTTA-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACAC
50857393 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
50857422 CCTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
50857450 CCTTATTTAT
Statistics
Matches: 291, Mismatches: 14, Indels: 10
0.92 0.04 0.03
Matches are distributed among these distances:
93 91 0.31
94 90 0.31
95 1 0.00
96 109 0.37
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:50860005 original size:40 final size:40
Alignment explanation
Indices: 50859973--50860195 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
50859963 CCAGCATGAT
* * * * *
50859973 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*** * *
50860013 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
50860053 TGCTCTTCGAAACTTA-CTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGC-CCGGATACATCACTAGCACGAA
*
50860093 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
50860133 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
50860173 TGCTCTTCGGAACTTAGTCCGGA
1 TGCTCTTCGGAACTTAGCCCGGA
50860196 CATCATTCGA
Statistics
Matches: 167, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 166 0.99
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:50860540 original size:29 final size:29
Alignment explanation
Indices: 50860501--50860579 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
50860491 CTTAATAATC
*
50860501 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
50860531 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
50860560 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50860580 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:50862956 original size:15 final size:16
Alignment explanation
Indices: 50862938--50862975 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
50862928 CTACCGTTAG
*
50862938 TATTATTTTCATTAC-
1 TATTATTTTCAATACA
*
50862953 TATTATTTTTAATACA
1 TATTATTTTCAATACA
50862969 TATTATT
1 TATTATT
50862976 ACTAATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTATTTTCAATACA
Found at i:50864853 original size:40 final size:40
Alignment explanation
Indices: 50864748--50864964 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
50864738 CGGATGATAA
* *
50864748 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
50864788 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50864827 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50864867 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
50864907 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
50864947 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50864965 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 51 0.31
40 115 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50864962 original size:119 final size:119
Alignment explanation
Indices: 50864744--50864964 Score: 331
Period size: 119 Copynumber: 1.9 Consensus size: 119
50864734 TATTCGGATG
* *
50864744 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
50864809 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
*
50864863 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
50864927 ATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
64 ATTTGAGCAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
50864965 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
118 2 0.02
119 64 0.70
120 26 0.28
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
Found at i:50872938 original size:40 final size:40
Alignment explanation
Indices: 50872835--50873050 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
50872825 CGGATGATAA
* *
50872835 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50872874 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50872913 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50872953 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
50872993 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
50873033 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50873051 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 24 0.15
39 36 0.22
40 104 0.63
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50874467 original size:14 final size:15
Alignment explanation
Indices: 50874443--50874471 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
50874433 TTTTCTACTT
50874443 ATTATTATTACTATA
1 ATTATTATTACTATA
50874458 ATTATT-TTACTATA
1 ATTATTATTACTATA
50874472 CCATCTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATTATTACTATA
Found at i:50874767 original size:28 final size:29
Alignment explanation
Indices: 50874710--50874812 Score: 72
Period size: 28 Copynumber: 3.7 Consensus size: 29
50874700 TATTCCTATT
* * *
50874710 TTTATTATTATCATTAACAT-TAT-TACTA
1 TTTATTATTATTATTAATATGCATATA-TA
50874738 TTTATTATTATTATT-ATATGCATATATA
1 TTTATTATTATTATTAATATGCATATATA
*** * *
50874766 TTT-TTACCGTCATTAATTTGCATATATA
1 TTTATTATTATTATTAATATGCATATATA
* *
50874794 TATA-TATTATTATTCATAT
1 TTTATTATTATTATTAATAT
50874813 TATTATTATT
Statistics
Matches: 56, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
27 10 0.18
28 44 0.79
29 2 0.04
ACGTcount: A:0.34, C:0.09, G:0.03, T:0.54
Consensus pattern (29 bp):
TTTATTATTATTATTAATATGCATATATA
Found at i:50874870 original size:3 final size:3
Alignment explanation
Indices: 50874864--50874990 Score: 68
Period size: 3 Copynumber: 43.3 Consensus size: 3
50874854 TAACCTCATT
* * * * **
50874864 TTA TTA TTA TCA TTC TTA TTA ATA -CA TTA TTA TTA TT- TTA CCA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* **
50874909 TTA TTA TT- TTA TATA TTA TTA TTT TTA TTA GCA TATA TTA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * * *
50874955 AT- TTA TTA CTA TTT TCTA TTA TT- TTA TTA CTA TTA T
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T
50874991 CATTTTTTAA
Statistics
Matches: 91, Mismatches: 24, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
2 9 0.10
3 75 0.82
4 7 0.08
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:50874912 original size:16 final size:15
Alignment explanation
Indices: 50874886--50874933 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
50874876 TTCTTATTAA
50874886 TACATTATTATTATTT
1 TACA-TATTATTATTT
50874902 TACCATATTATTATTT
1 TA-CATATTATTATTT
*
50874918 TATATATTATTATTT
1 TACATATTATTATTT
50874933 T
1 T
50874934 TATTAGCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 13 0.43
16 15 0.50
17 2 0.07
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (15 bp):
TACATATTATTATTT
Found at i:50874936 original size:24 final size:26
Alignment explanation
Indices: 50874907--50874996 Score: 78
Period size: 27 Copynumber: 3.5 Consensus size: 26
50874897 TATTTTACCA
50874907 TATTATTATTTTATA-TATTATTATT
1 TATTATTATTTTATATTATTATTATT
***
50874932 T-TTATTAGCATATATTATTATTAATT
1 TATTATTATTTTATATTATTATT-ATT
* *
50874958 TATTACTATTTTCTATTATT-TTATT
1 TATTATTATTTTATATTATTATTATT
*
50874983 ACTATTATCATTTT
1 --TATTATTATTTT
50874997 TTAAAAAAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
24 10 0.20
25 11 0.22
26 6 0.12
27 23 0.46
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.63
Consensus pattern (26 bp):
TATTATTATTTTATATTATTATTATT
Found at i:50874947 original size:22 final size:23
Alignment explanation
Indices: 50874919--50874962 Score: 72
Period size: 22 Copynumber: 1.9 Consensus size: 23
50874909 TTATTATTTT
50874919 ATATATTATTATT-TTTATTAGC
1 ATATATTATTATTATTTATTAGC
50874941 ATATATTATTATTAATTTATTA
1 ATATATTATTATT-ATTTATTA
50874963 CTATTTTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 13 0.65
24 7 0.35
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (23 bp):
ATATATTATTATTATTTATTAGC
Found at i:50875115 original size:10 final size:10
Alignment explanation
Indices: 50875102--50875171 Score: 58
Period size: 10 Copynumber: 7.0 Consensus size: 10
50875092 TATATGTGTA
50875102 TATATATTAT
1 TATATATTAT
50875112 TATATATT-T
1 TATATATTAT
*
50875121 ATATATAGTAT
1 -TATATATTAT
50875132 TATAT-TTAAT
1 TATATATT-AT
50875142 TAT-T-TTAT
1 TATATATTAT
*
50875150 TTTAATATTAT
1 TAT-ATATTAT
50875161 TATTATATTAT
1 TA-TATATTAT
50875172 ATGTCTTCCT
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
8 4 0.08
9 5 0.10
10 26 0.53
11 13 0.27
12 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (10 bp):
TATATATTAT
Found at i:50875116 original size:20 final size:20
Alignment explanation
Indices: 50875091--50875136 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
50875081 TATGTTTCTT
* *
50875091 TTATATGTGTATATATATTA
1 TTATATATGTATATATAGTA
*
50875111 TTATATATTTATATATAGTA
1 TTATATATGTATATATAGTA
50875131 TTATAT
1 TTATAT
50875137 TTAATTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (20 bp):
TTATATATGTATATATAGTA
Found at i:50875155 original size:14 final size:14
Alignment explanation
Indices: 50875109--50875164 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
50875099 GTATATATAT
50875109 TATTATATATTTATATA
1 TATTAT-TATTT-TA-A
*
50875126 TAGTATTATATTTAA
1 TATTATTAT-TTTAA
50875141 TTATT-TTATTTTAA
1 -TATTATTATTTTAA
50875155 TATTATTATT
1 TATTATTATT
50875165 ATATTATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
13 4 0.12
14 10 0.29
15 5 0.15
16 8 0.24
17 7 0.21
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (14 bp):
TATTATTATTTTAA
Found at i:50877502 original size:31 final size:31
Alignment explanation
Indices: 50877467--50877529 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
50877457 TAATTAGAAA
50877467 GAAAATTTAATTAATAAACCTAGAGTTAGTT
1 GAAAATTTAATTAATAAACCTAGAGTTAGTT
*
50877498 GAAAATTTAATTAATAAACTTAGAGTTAGTT
1 GAAAATTTAATTAATAAACCTAGAGTTAGTT
50877529 G
1 G
50877530 CTCTTACTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.44, C:0.05, G:0.14, T:0.37
Consensus pattern (31 bp):
GAAAATTTAATTAATAAACCTAGAGTTAGTT
Found at i:50881565 original size:19 final size:19
Alignment explanation
Indices: 50881541--50881579 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
50881531 TTGTAGAACG
50881541 TTGATGAAATCATAAGTTA
1 TTGATGAAATCATAAGTTA
50881560 TTGATGAAATCATAAGTTA
1 TTGATGAAATCATAAGTTA
50881579 T
1 T
50881580 CTTATAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.38
Consensus pattern (19 bp):
TTGATGAAATCATAAGTTA
Found at i:50883604 original size:10 final size:11
Alignment explanation
Indices: 50883558--50883607 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
50883548 ATTTGTTAGT
50883558 AAAATATTATA
1 AAAATATTATA
*
50883569 AAAAAATTATTA
1 AAAATATTA-TA
*
50883581 AAATTATT-TA
1 AAAATATTATA
*
50883591 AAAATATTAAA
1 AAAATATTATA
50883602 AAAATA
1 AAAATA
50883608 GGTTTAAACA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
10 9 0.28
11 15 0.47
12 8 0.25
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAATATTATA
Found at i:50885248 original size:12 final size:12
Alignment explanation
Indices: 50885227--50885257 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
50885217 GTTTTTTCAA
50885227 AAAAAAAAAAAG
1 AAAAAAAAAAAG
*
50885239 AAAAAGAAAAAG
1 AAAAAAAAAAAG
50885251 AAAAAAA
1 AAAAAAA
50885258 GAATTAGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:50885578 original size:16 final size:16
Alignment explanation
Indices: 50885528--50885578 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
50885518 TTTTATAATT
*
50885528 AAATTTATATAAAA-A
1 AAATTTATTTAAAATA
* * * *
50885543 TATTTTATTTATAATT
1 AAATTTATTTAAAATA
50885559 AAATTTATTTAAAATA
1 AAATTTATTTAAAATA
50885575 AAAT
1 AAAT
50885579 AAAAAATTGT
Statistics
Matches: 26, Mismatches: 9, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
15 10 0.38
16 16 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATTTATTTAAAATA
Found at i:50885727 original size:13 final size:13
Alignment explanation
Indices: 50885696--50885740 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
50885686 TATTTTTTCA
*
50885696 TATTTTTAAACAT
1 TATTTTTAAATAT
50885709 TA--TTTAAA-AT
1 TATTTTTAAATAT
50885719 TAATTTTTAAATAT
1 T-ATTTTTAAATAT
50885733 TATTTTTA
1 TATTTTTA
50885741 TTTTCAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
10 3 0.11
11 7 0.25
13 15 0.54
14 3 0.11
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (13 bp):
TATTTTTAAATAT
Found at i:50886279 original size:9 final size:9
Alignment explanation
Indices: 50886267--50886300 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
50886257 AAATTAATTT
50886267 TTTTAATAA
1 TTTTAATAA
*
50886276 TTTTTATAA
1 TTTTAATAA
50886285 TTTTAATAA
1 TTTTAATAA
50886294 TATTTAA
1 T-TTTAA
50886301 AAAATTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 17 0.77
10 5 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTTAATAA
Found at i:50889641 original size:15 final size:15
Alignment explanation
Indices: 50889621--50889650 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
50889611 TGTTATCTAA
50889621 GCTCCATTGATAATG
1 GCTCCATTGATAATG
50889636 GCTCCATTGATAATG
1 GCTCCATTGATAATG
50889651 AATTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (15 bp):
GCTCCATTGATAATG
Found at i:50892794 original size:43 final size:42
Alignment explanation
Indices: 50892602--50892805 Score: 135
Period size: 43 Copynumber: 4.8 Consensus size: 42
50892592 AGATGTGATT
* * *
50892602 ACATGTAAGACCATGT-TTGGACCATCGGCATTG-TATTGTGATT
1 ACATGTAAGACCATGTCTGGGA-CAT-GGCATTGATATT-CGATA
** * ** * * *
50892645 ATGTGTAAGACCATTTCTGGGACATCTACATCGTTATTCGATT
1 ACATGTAAGACCATGTCTGGGACAT-GGCATTGATATTCGATA
* * * * *
50892688 ACGTATAAGACCATGTCTGGGACATTGGCATCGTTATTCGATT
1 ACATGTAAGACCATGTCTGGGACA-TGGCATTGATATTCGATA
* * *
50892731 TCATGTAAGACCTTGCCTGGGACAGTGGCATTGATATGT-GATA
1 ACATGTAAGACCATGTCTGGGACA-TGGCATTGATAT-TCGATA
* *
50892774 ACATGTAAGACCATATCTGGGATATGGCATTG
1 ACATGTAAGACCATGTCTGGGACATGGCATTG
50892806 TACGAGCTTT
Statistics
Matches: 130, Mismatches: 27, Indels: 9
0.78 0.16 0.05
Matches are distributed among these distances:
42 8 0.06
43 112 0.86
44 10 0.08
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
ACATGTAAGACCATGTCTGGGACATGGCATTGATATTCGATA
Found at i:50900285 original size:43 final size:43
Alignment explanation
Indices: 50900237--50900400 Score: 163
Period size: 43 Copynumber: 3.8 Consensus size: 43
50900227 TACCGAGATA
* *
50900237 TGATTACATGTAAGACCATGTCTGGGACATTGGAATTGTATTG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTG
** * *
50900280 TGATTATGTGTAAGACCATGTTTGAGACATTGGCATCGTTATT-
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATTG
* * * * *
50900323 CGATTTCATGTAAGACCTTGCCTGGGACAGTGGCATCG-ATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TG
* * *
50900366 TGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCAT
50900401 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 22, Indels: 7
0.77 0.18 0.06
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 83 0.86
44 4 0.04
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTG
Found at i:50912727 original size:27 final size:27
Alignment explanation
Indices: 50912689--50912742 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
50912679 TTAAGGATGT
50912689 CCACTAACACCCTGATATCCTCATTAA
1 CCACTAACACCCTGATATCCTCATTAA
50912716 CCACTAACACCCTGATATCCTCATTAA
1 CCACTAACACCCTGATATCCTCATTAA
50912743 GTCTATCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.37, G:0.04, T:0.26
Consensus pattern (27 bp):
CCACTAACACCCTGATATCCTCATTAA
Found at i:50914014 original size:12 final size:12
Alignment explanation
Indices: 50913973--50914007 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
50913963 GGGACACGCC
50913973 TGTGTGGTAGCT
1 TGTGTGGTAGCT
50913985 TGTGTGGTAGCT
1 TGTGTGGTAGCT
50913997 TGTGTGGTAGC
1 TGTGTGGTAGC
50914008 CCGTGTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.09, C:0.09, G:0.43, T:0.40
Consensus pattern (12 bp):
TGTGTGGTAGCT
Found at i:50914532 original size:30 final size:30
Alignment explanation
Indices: 50914496--50914553 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
50914486 CCACTATGAG
*
50914496 TGCTAAATCATGCAACCACATATTAGCAAT
1 TGCTAAATCATGCAACCACATACTAGCAAT
50914526 TGCTAAATCATGCAACCACATACTAGCA
1 TGCTAAATCATGCAACCACATACTAGCA
50914554 TATAAATAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.40, C:0.26, G:0.10, T:0.24
Consensus pattern (30 bp):
TGCTAAATCATGCAACCACATACTAGCAAT
Found at i:50919393 original size:28 final size:28
Alignment explanation
Indices: 50919360--50919417 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
50919350 TGGCCCATCG
50919360 TATGGCCCATCAGGCCCAATCACTTTCA
1 TATGGCCCATCAGGCCCAATCACTTTCA
50919388 TATGGCCCATCAGGCCCAATCACTTTCA
1 TATGGCCCATCAGGCCCAATCACTTTCA
50919416 TA
1 TA
50919418 GTCATGCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.34, G:0.14, T:0.26
Consensus pattern (28 bp):
TATGGCCCATCAGGCCCAATCACTTTCA
Found at i:50919668 original size:16 final size:16
Alignment explanation
Indices: 50919635--50919669 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
50919625 GCCAAACTTA
* *
50919635 TGGCTTTTCGGCATTT
1 TGGCTTTTCGACAATT
50919651 TGGCTTTTCGACAATT
1 TGGCTTTTCGACAATT
50919667 TGG
1 TGG
50919670 GATTTACCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.17, G:0.26, T:0.46
Consensus pattern (16 bp):
TGGCTTTTCGACAATT
Found at i:50932100 original size:40 final size:40
Alignment explanation
Indices: 50931999--50932183 Score: 255
Period size: 40 Copynumber: 4.6 Consensus size: 40
50931989 TATTCGAATG
* *
50931999 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTGACT
* * *
50932040 ATATCCGGACTAAGATCCGAAGGCATTTGTG-TGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTGACT
* *
50932080 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
50932120 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
50932160 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
50932184 CTTGTACGAG
Statistics
Matches: 126, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
40 98 0.78
41 28 0.22
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:50940189 original size:40 final size:40
Alignment explanation
Indices: 50940086--50940306 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
50940076 TATTCGAATG
* *
50940086 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACT
* *
50940127 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACT
* ** * * *
50940167 ATATCCGGGCCAAAACCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
50940207 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * **
50940247 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
50940286 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50940307 ATACTTGGGT
Statistics
Matches: 150, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
38 13 0.09
39 15 0.10
40 93 0.62
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:50956704 original size:20 final size:20
Alignment explanation
Indices: 50956667--50956703 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
50956657 TGTTCATAGC
*
50956667 AAAAATTTTCTAAATTTTGT
1 AAAAATTTCCTAAATTTTGT
50956687 AAAAATTTCCT-AATTTT
1 AAAAATTTCCTAAATTTT
50956704 TTGTTTTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.49
Consensus pattern (20 bp):
AAAAATTTCCTAAATTTTGT
Found at i:50963613 original size:47 final size:47
Alignment explanation
Indices: 50963467--50963842 Score: 601
Period size: 47 Copynumber: 7.9 Consensus size: 47
50963457 AGATATAATG
50963467 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
50963516 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
50963565 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
50963612 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
50963661 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
50963708 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* * *
50963755 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGAGCCGAG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG-GCCTAA
* * * *
50963802 TGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50963843 TCCCGAAGGG
Statistics
Matches: 314, Mismatches: 9, Indels: 9
0.95 0.03 0.03
Matches are distributed among these distances:
46 2 0.01
47 188 0.60
48 2 0.01
49 122 0.39
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
Found at i:50963623 original size:96 final size:96
Alignment explanation
Indices: 50963467--50963842 Score: 618
Period size: 96 Copynumber: 3.9 Consensus size: 96
50963457 AGATATAATG
50963467 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
50963532 TGTGAAAGTGTATATATATGTGATAAGGCCTAA
64 TGTGAAAGTGTATATATATGTGATAAGGCCTAA
50963565 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
50963630 TGAAAGTGTATATATATGTGATAAGGCCTAA
66 TGAAAGTGTATATATATGTGATAAGGCCTAA
*
50963661 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
50963726 TGAAAGTG--TATATATGTGATGAGGCCTAA
66 TGAAAGTGTATATATATGTGATAAGGCCTAA
* * * * * *
50963755 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGGAT
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGAAT
50963819 GTGAAAGTGTATA-A-ATGTGATAAG
65 GTGAAAGTGTATATATATGTGATAAG
50963843 TCCCGAAGGG
Statistics
Matches: 266, Mismatches: 9, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
93 2 0.01
94 93 0.35
95 1 0.00
96 144 0.54
98 26 0.10
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
TGAAAGTGTATATATATGTGATAAGGCCTAA
Found at i:50968306 original size:46 final size:46
Alignment explanation
Indices: 50968253--50968432 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 46
50968243 TATTTAGGTA
*
50968253 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * *
50968299 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGAAATGTAACTAGCTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGA-ACG
50968350 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
50968396 -CCGGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50968433 GCGGGTTATG
Statistics
Matches: 109, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
45 3 0.03
46 60 0.55
47 6 0.06
48 2 0.02
49 2 0.02
50 6 0.06
51 29 0.27
52 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:50968363 original size:97 final size:97
Alignment explanation
Indices: 50968247--50968425 Score: 306
Period size: 97 Copynumber: 1.8 Consensus size: 97
50968237 TTCGGATATT
* *
50968247 TAGGTATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTT
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGGAACTCGTT
*
50968311 GAGTTGAGTCTGAGTTCGTGAAATGTAACTAGC
65 GAGTTGAGTCCGAGTTCGTGAAATGTAACTAGC
*
50968344 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCGGAGCTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCGGAACTCGTTG
50968409 AGTTGAGTCCGAGTTCG
66 AGTTGAGTCCGAGTTCG
50968426 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
96 2 0.03
97 75 0.97
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (97 bp):
TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCGGAACTCGTTG
AGTTGAGTCCGAGTTCGTGAAATGTAACTAGC
Found at i:50968797 original size:40 final size:40
Alignment explanation
Indices: 50968742--50968824 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
50968732 CTTTGTTAAG
50968742 TTATTTGTTATTTGCATGTGAACTTAGTAAGCATTTATGC
1 TTATTTGTTATTTGCATGTGAACTTAGTAAGCATTTATGC
50968782 TTATTTGTTATTTGCATGTGAACTTAGTAAGCATTTATGC
1 TTATTTGTTATTTGCATGTGAACTTAGTAAGCATTTATGC
50968822 TTA
1 TTA
50968825 CTCCTTCCCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.25, C:0.10, G:0.17, T:0.48
Consensus pattern (40 bp):
TTATTTGTTATTTGCATGTGAACTTAGTAAGCATTTATGC
Found at i:50974882 original size:27 final size:27
Alignment explanation
Indices: 50974852--50974958 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
50974842 AATCTCATAT
* * *
50974852 CTGTAGGCTAGTATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTAAAATACCC
*
50974879 CTGTAGGGTAGAATTACTAAAATGCCC
1 CTGTAGGGTAGAATTACTAAAATACCC
* * *
50974906 CTATAGGATAGAATTACTAAAATGCCC
1 CTGTAGGGTAGAATTACTAAAATACCC
50974933 CTGTAGGGTAGAATTACTAAAATACC
1 CTGTAGGGTAGAATTACTAAAATACC
50974959 TTTGGTTTAC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTAAAATACCC
Found at i:50974974 original size:27 final size:27
Alignment explanation
Indices: 50974944--50975068 Score: 92
Period size: 27 Copynumber: 4.7 Consensus size: 27
50974934 TGTAGGGTAG
*
50974944 AATTACTAAAATACCTTTGGTTTACAA
1 AATTACTAAAATACCCTTGGTTTACAA
** *
50974971 AATTA-TTGAATACCCTTGGTTTGCAA
1 AATTACTAAAATACCCTTGGTTTACAA
* * * *
50974997 AATTACCAAAAAACCC-TCGATTAGCAA
1 AATTACTAAAATACCCTTGGTTTA-CAA
* * * * **
50975024 AATTACCAAAACACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTACAA
*
50975051 AATTACCAAAATACCCTT
1 AATTACTAAAATACCCTT
50975069 ACAACATGTT
Statistics
Matches: 77, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
26 26 0.34
27 47 0.61
28 4 0.05
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACTAAAATACCCTTGGTTTACAA
Found at i:50975371 original size:15 final size:15
Alignment explanation
Indices: 50975351--50975380 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50975341 CTTTTTTGGC
*
50975351 CGATTTGCTTTCTGT
1 CGATTTGCTCTCTGT
50975366 CGATTTGCTCTCTGT
1 CGATTTGCTCTCTGT
50975381 TTTACCCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.20, T:0.50
Consensus pattern (15 bp):
CGATTTGCTCTCTGT
Found at i:50976434 original size:19 final size:19
Alignment explanation
Indices: 50976410--50976446 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
50976400 GCATGACCTC
50976410 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
50976429 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
50976447 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:50978453 original size:119 final size:118
Alignment explanation
Indices: 50978356--50978638 Score: 433
Period size: 119 Copynumber: 2.4 Consensus size: 118
50978346 TAATTGAAAA
* * *
50978356 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTT-ACAGTATCATATA
* *
50978420 TTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
65 TTATGATTTCAGAAAATTAATATAAGAATATTT-ATATTAAGAATTTTATTAAAT
* *
50978475 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTACAGTATCATATAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTACAGTATCATATAT
* *
50978540 TATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TATGATTTCAGAAAATTAATATAAGAATATTTA-TATTAAGAATTTTATTAAAT
*
50978594 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
50978639 ATGATTAAAT
Statistics
Matches: 149, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
118 1 0.01
119 106 0.71
120 42 0.28
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (118 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTACAGTATCATATAT
TATGATTTCAGAAAATTAATATAAGAATATTTATATTAAGAATTTTATTAAAT
Found at i:50978489 original size:18 final size:17
Alignment explanation
Indices: 50978463--50978497 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50978453 AATATTAAGA
*
50978463 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50978480 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50978498 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50978610 original size:18 final size:17
Alignment explanation
Indices: 50978582--50978616 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50978572 ATTATTAAGA
*
50978582 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
50978599 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
50978617 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:50978616 original size:16 final size:16
Alignment explanation
Indices: 50978582--50978636 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
50978572 ATTATTAAGA
50978582 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
50978599 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
50978615 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
50978629 ATGTTTAA
1 AT-TTTAA
50978637 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:50978873 original size:16 final size:16
Alignment explanation
Indices: 50978852--50978919 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
50978842 GATTTGCTAT
50978852 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
50978868 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
50978884 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50978900 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50978916 TACA
1 TACA
50978920 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:50979210 original size:27 final size:27
Alignment explanation
Indices: 50978933--50979236 Score: 231
Period size: 27 Copynumber: 11.3 Consensus size: 27
50978923 AACCAAACGC
50978933 ACCCTT-AGTTTGTAAAATTACCAAAAT
1 ACCCTTGA-TTTGTAAAATTACCAAAAT
* * **
50978960 A-CCTTAATTTGTGAAATTACTGAAAT
1 ACCCTTGATTTGTAAAATTACCAAAAT
* ** *
50978986 ACCCTCGACCTGTAAAATTAACAAAAT
1 ACCCTTGATTTGTAAAATTACCAAAAT
** * **
50979013 ACCCTCAACTTGTAAAATTATTAAAAT
1 ACCCTTGATTTGTAAAATTACCAAAAT
**
50979040 ACATTTGATTTGTAAAATTACCAAAAT
1 ACCCTTGATTTGTAAAATTACCAAAAT
* * *
50979067 ACCCCTGATTTGGAAAATTACCGAAAT
1 ACCCTTGATTTGTAAAATTACCAAAAT
*
50979094 ACCCTTGATTT-TGAAAATTACAAAAAT
1 ACCCTTGATTTGT-AAAATTACCAAAAT
* * **
50979121 ACCCCTAATTTACAAAATTA-CAGAAAT
1 ACCCTTGATTTGTAAAATTACCA-AAAT
* **
50979148 ACCTTTGACTTTCAAAAATTA-CAGAAAT
1 ACCCTTGA-TTTGTAAAATTACCA-AAAT
* * *
50979176 ACCATTGGTTTGCAAAATTACCAAAAT
1 ACCCTTGATTTGTAAAATTACCAAAAT
* * * *
50979203 ACCCTTGGTTTGTAGATTTACCAAAAC
1 ACCCTTGATTTGTAAAATTACCAAAAT
50979230 ACCCTTG
1 ACCCTTG
50979237 GAGGGTGAAA
Statistics
Matches: 221, Mismatches: 49, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
26 22 0.10
27 174 0.79
28 25 0.11
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
ACCCTTGATTTGTAAAATTACCAAAAT
Found at i:50979735 original size:22 final size:21
Alignment explanation
Indices: 50979684--50979735 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
50979674 GTTAATTGTT
50979684 CTGATTATGGCTTACGCCAAC
1 CTGATTATGGCTTACGCCAAC
* **
50979705 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCT-TACGCCAAC
50979727 CTGATTATG
1 CTGATTATG
50979736 TTTATGTACC
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
20 1 0.04
21 9 0.38
22 13 0.54
23 1 0.04
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (21 bp):
CTGATTATGGCTTACGCCAAC
Found at i:50979975 original size:22 final size:22
Alignment explanation
Indices: 50979950--50979997 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
50979940 GTTGCTGCGA
*
50979950 TGTTTGCGGCTATGTGCTATCC
1 TGTTTACGGCTATGTGCTATCC
* * *
50979972 TGTTTATGGCTATGTGTTGTCC
1 TGTTTACGGCTATGTGCTATCC
50979994 TGTT
1 TGTT
50979998 CATAGCCTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.08, C:0.17, G:0.27, T:0.48
Consensus pattern (22 bp):
TGTTTACGGCTATGTGCTATCC
Found at i:50981917 original size:27 final size:28
Alignment explanation
Indices: 50981754--50981904 Score: 232
Period size: 28 Copynumber: 5.4 Consensus size: 28
50981744 GAGATTGGCG
* * * *
50981754 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
50981783 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50981811 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50981839 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
50981867 CTAAGTGTGGGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
50981894 CTGAGTGTGCG
1 CTAAGTGTGCG
50981905 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 23 0.20
28 77 0.67
29 15 0.13
ACGTcount: A:0.27, C:0.11, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:50992161 original size:14 final size:14
Alignment explanation
Indices: 50992142--50992170 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50992132 TTGCAAATGT
50992142 CAGAAATCACCACA
1 CAGAAATCACCACA
50992156 CAGAAATCACCACA
1 CAGAAATCACCACA
50992170 C
1 C
50992171 TATCAAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.38, G:0.07, T:0.07
Consensus pattern (14 bp):
CAGAAATCACCACA
Found at i:50993669 original size:40 final size:40
Alignment explanation
Indices: 50993639--50993822 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
50993629 GCTACTCGTT
*
50993639 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
50993679 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
50993719 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
50993758 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
50993799 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
50993823 ACATCATTCA
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 3 0.02
39 30 0.24
40 80 0.65
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:50993761 original size:79 final size:82
Alignment explanation
Indices: 50993639--50993823 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
50993629 GCTACTCGTT
* * *
50993639 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTT-GGGATCTTAGCCC
* *
50993702 GGTTATAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * *
50993719 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCACACAAATGCCTTTGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTGGGATCTTAGCCCG
* *
50993782 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
50993799 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50993824 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTGGGATCTTAGCCCG
GATATAGTAACTTAGCA
Found at i:50996141 original size:27 final size:27
Alignment explanation
Indices: 50996055--50996150 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 27
50996045 GGAAGTATTG
* * * *
50996055 TACTGGTGACTATGTCACATTCACTAT
1 TACTGGTGGCTATGCCACATTTACTGT
* *
50996082 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACATTTACTGT
*
50996109 TACTGGTGGCTTTGCCACATTTACTGT
1 TACTGGTGGCTATGCCACATTTACTGT
* *
50996136 TTCTGGTAGCTATGC
1 TACTGGTGGCTATGC
50996151 TGCATTATTA
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACATTTACTGT
Found at i:50996142 original size:54 final size:52
Alignment explanation
Indices: 50996055--50996175 Score: 125
Period size: 54 Copynumber: 2.3 Consensus size: 52
50996045 GGAAGTATTG
* * * *
50996055 TACTGGTGACTATGTCACATTCACTATTACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTTTGCCACATTCACTATTACTGGTAGCTATGCCAC-ATTA-TGA
* * * ** *
50996109 TACTGGTGGCTTTGCCACATTTACTGTTTCTGGTAGCTATGCTGCATTATTA
1 TACTGGTGGCTTTGCCACATTCACTATTACTGGTAGCTATGCCACATTATGA
*
50996161 TACTGGTAGCTTTGC
1 TACTGGTGGCTTTGC
50996176 TGCGTTATTA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
52 16 0.29
53 4 0.07
54 36 0.64
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (52 bp):
TACTGGTGGCTTTGCCACATTCACTATTACTGGTAGCTATGCCACATTATGA
Found at i:50996169 original size:25 final size:25
Alignment explanation
Indices: 50996138--50996185 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
50996128 TTTACTGTTT
50996138 CTGGTAGCTATGCTGCATTATTATA
1 CTGGTAGCTATGCTGCATTATTATA
* *
50996163 CTGGTAGCTTTGCTGCGTTATTA
1 CTGGTAGCTATGCTGCATTATTA
50996186 GTGTGCTGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.42
Consensus pattern (25 bp):
CTGGTAGCTATGCTGCATTATTATA
Found at i:51013392 original size:22 final size:22
Alignment explanation
Indices: 51013330--51013385 Score: 85
Period size: 23 Copynumber: 2.5 Consensus size: 22
51013320 ACGCTGATGC
51013330 ATAGTAAGCTCTATTGAGCTGAA
1 ATAGTAAGCTCTATTGAGCTG-A
* *
51013353 ACAGTCAGCTCTATTGAGCTGA
1 ATAGTAAGCTCTATTGAGCTGA
51013375 ATAGTAAGCTC
1 ATAGTAAGCTC
51013386 GTATGAGTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 10 0.34
23 19 0.66
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (22 bp):
ATAGTAAGCTCTATTGAGCTGA
Found at i:51016339 original size:41 final size:41
Alignment explanation
Indices: 51016294--51016447 Score: 209
Period size: 41 Copynumber: 3.8 Consensus size: 41
51016284 AAGATTATTG
* * * * *
51016294 CTGAATTGCACAAATGTGCCCCTGTTTGTACTTCAGTACCT
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
51016335 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
* * * * *
51016376 CTGAGTTGCACATATGTGCCCCTGTCTGTACTTTGGTACCC
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
*
51016417 CTGAATTGTACATACGTGCCCCTATTTGTAC
1 CTGAATTGCACATACGTGCCCCTATTTGTAC
51016448 CACAGTACTC
Statistics
Matches: 98, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 98 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (41 bp):
CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
Found at i:51016436 original size:82 final size:82
Alignment explanation
Indices: 51016294--51016447 Score: 245
Period size: 82 Copynumber: 1.9 Consensus size: 82
51016284 AAGATTATTG
* *
51016294 CTGAATTGCACAAATGTGCCCCTGTTTGTACTTCAGTACCTCTGAATTGCACATACGTGCCCCTA
1 CTGAATTGCACAAATGTGCCCCTGTCTGTACTTCAGTACCCCTGAATTGCACATACGTGCCCCTA
51016359 TTTGTACTTCGGTACCC
66 TTTGTACTTCGGTACCC
* * ** *
51016376 CTGAGTTGCACATATGTGCCCCTGTCTGTACTTTGGTACCCCTGAATTGTACATACGTGCCCCTA
1 CTGAATTGCACAAATGTGCCCCTGTCTGTACTTCAGTACCCCTGAATTGCACATACGTGCCCCTA
51016441 TTTGTAC
66 TTTGTAC
51016448 CACAGTACTC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
82 65 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (82 bp):
CTGAATTGCACAAATGTGCCCCTGTCTGTACTTCAGTACCCCTGAATTGCACATACGTGCCCCTA
TTTGTACTTCGGTACCC
Found at i:51016447 original size:20 final size:20
Alignment explanation
Indices: 51016344--51016447 Score: 66
Period size: 20 Copynumber: 5.1 Consensus size: 20
51016334 TCTGAATTGC
51016344 ACATACGTGCCCCTATTTGT
1 ACATACGTGCCCCTATTTGT
* * * *
51016364 AC-TTCGGTACCCCTGAGTTGC
1 ACATAC-GTGCCCCT-ATTTGT
* * *
51016385 ACATATGTGCCCCTGTCTGT
1 ACATACGTGCCCCTATTTGT
* ** * *
51016405 ACTTTGGTACCCCTGAATTGT
1 ACATACGTGCCCCT-ATTTGT
51016426 ACATACGTGCCCCTATTTGT
1 ACATACGTGCCCCTATTTGT
51016446 AC
1 AC
51016448 CACAGTACTC
Statistics
Matches: 57, Mismatches: 23, Indels: 8
0.65 0.26 0.09
Matches are distributed among these distances:
19 2 0.04
20 28 0.49
21 26 0.46
22 1 0.02
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.34
Consensus pattern (20 bp):
ACATACGTGCCCCTATTTGT
Found at i:51028717 original size:3 final size:3
Alignment explanation
Indices: 51028676--51028700 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
51028666 ATATACTAAT
51028676 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
51028701 TATTATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:51033639 original size:34 final size:34
Alignment explanation
Indices: 51033561--51033657 Score: 96
Period size: 34 Copynumber: 2.9 Consensus size: 34
51033551 TTGATTGCAT
*
51033561 ACTG-TACTGATT-CTGT-AATGGGCTTAGGCCCC
1 ACTGCTACTG-TTACTGTAAATGGGCTAAGGCCCC
* *
51033593 ACTGCTACTGTTACTG-AAATGGGCTCAGGCCCAG
1 ACTGCTACTGTTACTGTAAATGGGCTAAGGCCC-C
* *
51033627 ATTGCTATTGTTACTGTAAA-GGGCTAAGGCC
1 ACTGCTACTGTTACTGTAAATGGGCTAAGGCC
51033658 TTAACTGATA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
32 6 0.11
33 22 0.40
34 24 0.44
35 3 0.05
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (34 bp):
ACTGCTACTGTTACTGTAAATGGGCTAAGGCCCC
Found at i:51039337 original size:6 final size:6
Alignment explanation
Indices: 51039315--51039384 Score: 95
Period size: 6 Copynumber: 11.5 Consensus size: 6
51039305 AGGTGAAATT
* * * *
51039315 AATAAA AACATAA AATGAA AATGAA AATGAA AATAAA AATAAA AATAAA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
51039364 AATAAA AATAAA AATAAA AAT
1 AATAAA AATAAA AATAAA AAT
51039385 GGAAATTAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
6 55 0.93
7 4 0.07
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:51040333 original size:14 final size:15
Alignment explanation
Indices: 51040309--51040338 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51040299 GGATATCAAA
51040309 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
51040324 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
51040338 A
1 A
51040339 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:51044836 original size:55 final size:55
Alignment explanation
Indices: 51044740--51044843 Score: 129
Period size: 55 Copynumber: 1.9 Consensus size: 55
51044730 ACGTTTGCTT
* * *
51044740 GGCACGGGCGTGTTGAACTCCCGTGTTAATTTGACAGGTTCGGCCACGGGTTCAA
1 GGCACGGGCGTGTTGAACGCCCGTGCTAATTTGACAGGTTCGCCCACGGGTTCAA
* * * *
51044795 GGCACGGGCGTGTT-ACACGCTCGTGCTATTTTGGCATGTTCGCCCACGG
1 GGCACGGGCGTGTTGA-ACGCCCGTGCTAATTTGACAGGTTCGCCCACGG
51044844 CCATGTCGCA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 1 0.02
55 40 0.98
ACGTcount: A:0.15, C:0.26, G:0.33, T:0.26
Consensus pattern (55 bp):
GGCACGGGCGTGTTGAACGCCCGTGCTAATTTGACAGGTTCGCCCACGGGTTCAA
Found at i:51053589 original size:85 final size:85
Alignment explanation
Indices: 51053490--51053668 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
51053480 GGCCAGCCAT
51053490 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
51053555 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
51053575 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
51053640 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
51053660 GAGCATGGG
1 GAGCATGGG
51053669 CAATAAAATA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:51055026 original size:40 final size:40
Alignment explanation
Indices: 51054835--51055019 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
51054825 TTGAATGATG
* * * *
51054835 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51054875 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51054915 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51054954 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51054995 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51055020 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51055041 original size:79 final size:79
Alignment explanation
Indices: 51054888--51055042 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
51054878 GGACTAAGAT
* * **
51054888 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
51054953 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
51054967 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
51055030 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
51055043 ATTCCGACGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:51057182 original size:15 final size:15
Alignment explanation
Indices: 51057162--51057194 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
51057152 ATATACTAAT
*
51057162 TAATAATTATTATAA
1 TAATAATAATTATAA
51057177 TAATAATAATTATAA
1 TAATAATAATTATAA
51057192 TAA
1 TAA
51057195 ATATCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAATAATAATTATAA
Found at i:51057451 original size:12 final size:12
Alignment explanation
Indices: 51057427--51057484 Score: 50
Period size: 12 Copynumber: 4.9 Consensus size: 12
51057417 AATTTATTTG
51057427 ATAAT-ATTAATA
1 ATAATAATT-ATA
51057439 ATAATAATTATA
1 ATAATAATTATA
*
51057451 ACAATAATT-TA
1 ATAATAATTATA
*
51057462 ATAAAAATCTAT-
1 ATAATAAT-TATA
*
51057474 TTAATAATTAT
1 ATAATAATTAT
51057485 TTTTATTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
11 11 0.29
12 23 0.61
13 4 0.11
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAATAATTATA
Found at i:51057591 original size:32 final size:30
Alignment explanation
Indices: 51057554--51057635 Score: 85
Period size: 32 Copynumber: 2.6 Consensus size: 30
51057544 ATTATTTAAT
*
51057554 TAATAAATATCT-TTTAACTTAATAATAATAAG
1 TAATAAATATCTATTT-ACTT-A-AATAAAAAG
*
51057586 TAATAAATACCTATTTACTTAAATAAAAAG
1 TAATAAATATCTATTTACTTAAATAAAAAG
*
51057616 TAATTAAATATTTATGTTAC
1 TAA-TAAATATCTAT-TTAC
51057636 AATTGTATAC
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
30 11 0.26
31 10 0.23
32 19 0.44
33 3 0.07
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (30 bp):
TAATAAATATCTATTTACTTAAATAAAAAG
Found at i:51061307 original size:40 final size:40
Alignment explanation
Indices: 51061248--51061468 Score: 295
Period size: 40 Copynumber: 5.5 Consensus size: 40
51061238 ACCCAAGCAT
* * *
51061248 CTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATGG
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
51061287 CTTCGGGTCTTGGCCCGGATATAGCAACTCACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
51061327 CTTCGGGACTTAGCCTGGATATAGTCAA-TAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
* * *
51061367 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCAAAAAAGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
51061407 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
*
51061447 CTTCGAGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51061469 CATTCGAATA
Statistics
Matches: 160, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 12 0.08
40 145 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:51067800 original size:40 final size:40
Alignment explanation
Indices: 51067716--51067900 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
51067706 TCGAATGATG
* *
51067716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
51067755 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
51067796 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
51067835 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
51067874 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51067901 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:51067852 original size:79 final size:81
Alignment explanation
Indices: 51067716--51067898 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
51067706 TCGAATGATG
* *
51067716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
51067780 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
51067795 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
51067857 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
51067875 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
51067899 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:51067922 original size:79 final size:78
Alignment explanation
Indices: 51067717--51067933 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
51067707 CGAATGATGT
* *
51067717 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
51067780 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
51067797 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
51067860 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
51067876 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
51067934 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:51071517 original size:48 final size:48
Alignment explanation
Indices: 51071449--51071773 Score: 515
Period size: 48 Copynumber: 6.8 Consensus size: 48
51071439 CAAGATAAAT
* * * * *
51071449 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
51071497 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
51071545 ATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
51071593 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
51071641 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
51071689 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
51071737 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
51071774 TGTTGTAACA
Statistics
Matches: 257, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 257 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:51071623 original size:144 final size:144
Alignment explanation
Indices: 51071449--51071773 Score: 587
Period size: 144 Copynumber: 2.3 Consensus size: 144
51071439 CAAGATAAAT
* * * * * *
51071449 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTGTATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
51071514 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
51071579 GAAATATGTATGAG
131 GAAATATGTATGAG
51071593 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
*
51071658 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
51071723 GAAATATGTATGAG
131 GAAATATGTATGAG
51071737 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
51071774 TGTTGTAACA
Statistics
Matches: 174, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 174 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
GAAATATGTATGAG
Found at i:51071872 original size:37 final size:37
Alignment explanation
Indices: 51071821--51071919 Score: 171
Period size: 37 Copynumber: 2.7 Consensus size: 37
51071811 ATGTATTCCG
*
51071821 GGTAAGACCAGATGACTACGTGTGGAGATTTTGTCCA
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
*
51071858 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
*
51071895 GGTAAGACCCGATAACTACGTGTGG
1 GGTAAGACCCGATGACTACGTGTGG
51071920 GGACTATTCG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
Found at i:51073554 original size:25 final size:25
Alignment explanation
Indices: 51073526--51073580 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
51073516 GGTTTAAAGA
51073526 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-AGATTC
*
51073551 ATTCGCACACATAGTGCCTAGATTC
1 ATTCGCACACACAGTGCCTAGATTC
51073576 ATTCG
1 ATTCG
51073581 TTATTACGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTAGATTC
Found at i:51073809 original size:40 final size:40
Alignment explanation
Indices: 51073744--51074144 Score: 676
Period size: 40 Copynumber: 10.0 Consensus size: 40
51073734 GATTACACAT
* * * *
51073744 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
51073784 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
51073824 CACCACCATGAATGCTCTTCGGGACTTAGCCCGTATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
51073864 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
51073904 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
51073944 CACCAGCACGAATGCTCTTCAGGACTTAGGCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
51073984 CACCACCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
51074024 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
51074064 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
51074104 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
51074144 C
1 C
51074145 TCTCAATTCT
Statistics
Matches: 340, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 340 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:51074426 original size:12 final size:12
Alignment explanation
Indices: 51074409--51074433 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51074399 TCCCATACAC
51074409 ATTTCGTAAATA
1 ATTTCGTAAATA
51074421 ATTTCGTAAATA
1 ATTTCGTAAATA
51074433 A
1 A
51074434 CACTCACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
ATTTCGTAAATA
Found at i:51080919 original size:46 final size:46
Alignment explanation
Indices: 51080866--51081041 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
51080856 TATTTGGGCA
51080866 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
51080912 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* **
51080959 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
51081005 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51081042 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 65 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:51081021 original size:93 final size:93
Alignment explanation
Indices: 51080862--51081034 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
51080852 GGGATATTTG
* *
51080862 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51080927 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
51080955 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51081020 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
51081035 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:51087618 original size:49 final size:49
Alignment explanation
Indices: 51087514--51087646 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 49
51087504 CTTGTTGAGT
* * *
51087514 GTCAGTGTAAGACCTATTTGGGACATGGCATCGGCACCTATAGATGAGA
1 GTCAGTGTAAGACCTATTTGGGACATGGCATCGGCACCGATAGAAGAAA
* *
51087563 GCCAGTGTAAGACCTATTTGGGACATGGCATCGGC-CTCGATATAAGAAA
1 GTCAGTGTAAGACCTATTTGGGACATGGCATCGGCAC-CGATAGAAGAAA
* * *
51087612 GTCAGTGTAAAACCTGTCTGGGACACT-GCATCGGC
1 GTCAGTGTAAGACCTATTTGGGACA-TGGCATCGGC
51087647 TTTGATGTGC
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
48 1 0.01
49 71 0.97
50 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACCTATTTGGGACATGGCATCGGCACCGATAGAAGAAA
Found at i:51090250 original size:39 final size:39
Alignment explanation
Indices: 51090183--51090366 Score: 280
Period size: 39 Copynumber: 4.7 Consensus size: 39
51090173 ACAAAGCATG
* * *
51090183 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
51090223 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
*
51090263 CGGGGCTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
51090302 CGGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
51090341 CAGGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
51090367 TTATAAAGTC
Statistics
Matches: 136, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 116 0.85
40 20 0.15
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:51090472 original size:28 final size:28
Alignment explanation
Indices: 51090439--51090520 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
51090429 ATTTAATCAT
* *
51090439 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
51090467 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * *
51090495 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
51090521 ATTTGATTGC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Done.