Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 158 of 253
Found at i:51095541 original size:30 final size:30
Alignment explanation
Indices: 51095507--51095567 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
51095497 TCCTTAACTC
51095507 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
51095537 AAACTTTTGTATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
51095567 A
1 A
51095568 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:51096455 original size:27 final size:26
Alignment explanation
Indices: 51096418--51096529 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
51096408 AGCATGGCTG
* *
51096418 CCAGAACAGATAATGTGATC-GAGTCA
1 CCAGAACAGATAATGTG-GCAGAGCCA
51096444 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
51096472 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
51096499 CCATATCAGATAATTGTGCCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
51096526 CCAG
1 CCAG
51096530 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.08
27 53 0.72
28 15 0.20
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:51096482 original size:54 final size:54
Alignment explanation
Indices: 51096418--51096529 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
51096408 AGCATGGCTG
* * *
51096418 CCAGAACAGATA-ATGTGATC-GAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTG-GCAGAGCCACCAGAT-CAGATAATCGTGCCAGAGCCA
* * *
51096472 CCAGAACAGATATATGTGGCAGAGCCACCATATCAGATAATTGTGCCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGCCAGAGCCA
51096526 CCAG
1 CCAG
51096530 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 35 0.70
55 15 0.30
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGCCAGAGCCA
Found at i:51104295 original size:25 final size:26
Alignment explanation
Indices: 51104219--51104325 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
51104209 AGCATGGCTG
* ** *
51104219 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAAATAATGTGGCAGAGCCA
51104245 CCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAAATAAT-GTGGCAGAGCCA
*
51104273 CCAGAACATAT-ATGTGGCAGAGCCA
1 CCAGAACAAATAATGTGGCAGAGCCA
** * *
51104298 CCAGATTAGATAATTGTGGCATAGCCA
1 CCAGAACAAATAA-TGTGGCAGAGCCA
51104325 C
1 C
51104326 TAGGACGCTT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
25 20 0.29
26 8 0.12
27 26 0.38
28 14 0.21
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAAATAATGTGGCAGAGCCA
Found at i:51104323 original size:27 final size:25
Alignment explanation
Indices: 51104255--51104325 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
51104245 CCAGATACAA
*
51104255 ATAATCGTGGCAGAGCCACCAGAAC
1 ATAATTGTGGCAGAGCCACCAGAAC
*
51104280 AT-ATATGTGGCAGAGCCACCAGATTAG
1 ATAAT-TGTGGCAGAGCCACCAGA--AC
*
51104307 ATAATTGTGGCATAGCCAC
1 ATAATTGTGGCAGAGCCAC
51104326 TAGGACGCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
24 2 0.05
25 19 0.49
27 16 0.41
28 2 0.05
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.20
Consensus pattern (25 bp):
ATAATTGTGGCAGAGCCACCAGAAC
Found at i:51104324 original size:52 final size:54
Alignment explanation
Indices: 51104219--51104325 Score: 128
Period size: 52 Copynumber: 2.0 Consensus size: 54
51104209 AGCATGGCTG
* *
51104219 CCAGAACAGATAATGTGATAGAGTCACCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
* * * * * *
51104273 CCAGAACATAT-ATGTGGCAGAGCCACCAGAT-TAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
51104325 C
1 C
51104326 TAGGACGCTT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
52 18 0.40
53 17 0.38
54 10 0.22
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
Found at i:51112316 original size:6 final size:6
Alignment explanation
Indices: 51112262--51112330 Score: 52
Period size: 6 Copynumber: 11.3 Consensus size: 6
51112252 AAGAAACATT
* * * * *
51112262 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATTAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
51112311 ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
51112331 TAGGTGACAG
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
5 2 0.04
6 44 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:51112324 original size:31 final size:31
Alignment explanation
Indices: 51112283--51112351 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
51112273 AATCAAAATG
* *
51112283 AGAATTAGAATTAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
51112314 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
51112345 AAAATCA
1 AGAATCA
51112352 ATATCAGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.48, C:0.12, G:0.20, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:51112341 original size:25 final size:25
Alignment explanation
Indices: 51112313--51112380 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
51112303 GTGACAGAAT
* *
51112313 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
51112338 CAGAATCAAAATCA-ATATCAGGTAA
1 CAGAATCAGAATCAGA-ATCAGGTAA
* *
51112363 CAAAACCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
51112381 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
24 1 0.03
25 33 0.94
26 1 0.03
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:51112626 original size:20 final size:20
Alignment explanation
Indices: 51112601--51112655 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
51112591 TATAATTGGC
*
51112601 ACGAAGCCCAAAATATCGAT
1 ACGAAGCCCACAATATCGAT
51112621 ACGAAGCCCACAATATCGAT
1 ACGAAGCCCACAATATCGAT
51112641 ACGAAGCCCACAATA
1 ACGAAGCCCACAATA
51112656 ACGGCACACA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.44, C:0.29, G:0.15, T:0.13
Consensus pattern (20 bp):
ACGAAGCCCACAATATCGAT
Found at i:51112693 original size:22 final size:22
Alignment explanation
Indices: 51112658--51112720 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
51112648 CCACAATAAC
*
51112658 GGCACACAGCCATAATCAGGTT
1 GGCACAAAGCCATAATCAGGTT
* *
51112680 GGTACAAAGCCAT-ATGTAGGTT
1 GGCACAAAGCCATAAT-CAGGTT
* *
51112702 GGCGCAAAGCCAAAATCAG
1 GGCACAAAGCCATAATCAG
51112721 AATAATTGGC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 28 0.88
23 2 0.06
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.17
Consensus pattern (22 bp):
GGCACAAAGCCATAATCAGGTT
Found at i:51113264 original size:27 final size:27
Alignment explanation
Indices: 51113234--51113404 Score: 148
Period size: 27 Copynumber: 6.3 Consensus size: 27
51113224 GGGGCAAAAT
* *
51113234 GGTAATTTTGTCCC-ACAAGGGTATCTC
1 GGTAATTTT-ACCCTACAAGGGTATTTC
* *
51113261 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
51113288 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
** * *
51113315 GGTAATCCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
** * * *
51113342 AATAATTCTACCCCACAAGTGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
51113369 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
51113396 AATAATTTT
1 GGTAATTTT
51113405 GTAAATCGAG
Statistics
Matches: 118, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 6 0.05
27 110 0.93
28 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:51113306 original size:54 final size:54
Alignment explanation
Indices: 51113245--51113402 Score: 235
Period size: 54 Copynumber: 2.9 Consensus size: 54
51113235 GTAATTTTGT
* ** *
51113245 CCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 CCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
* * *
51113299 CCTACAAGGGTATTTCGGTAATCCTACCCTATAGGGGTATTTCAATAATTCTAC
1 CCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
* *
51113353 CCCACAAGTGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATT
1 CCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATT
51113403 TTGTAAATCG
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (54 bp):
CCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
Found at i:51115471 original size:6 final size:6
Alignment explanation
Indices: 51115433--51115563 Score: 99
Period size: 6 Copynumber: 21.3 Consensus size: 6
51115423 AAGAAACATT
* * * *
51115433 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATCAGA ATCA-A GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
51115482 ATTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
*
51115531 ATCAGT ATCAGGTA AT-AGA ATCAGA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
51115564 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 16, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
5 7 0.07
6 79 0.81
7 7 0.07
8 5 0.05
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:51115490 original size:25 final size:25
Alignment explanation
Indices: 51115454--51115563 Score: 99
Period size: 25 Copynumber: 4.7 Consensus size: 25
51115444 AATCAAAATG
*
51115454 AGAATCAAAATCAGAATCAAGTGAC
1 AGAATCAGAATCAGAATCAAGTGAC
*
51115479 AGAATTAGAATCAG----AA-T--C
1 AGAATCAGAATCAGAATCAAGTGAC
* *
51115497 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAAGTGAC
* * * *
51115522 AGAATCAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCAGAATCAAGTGAC
51115547 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
51115564 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
18 14 0.20
20 1 0.01
21 2 0.03
22 1 0.01
23 1 0.01
25 50 0.72
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAAGTGAC
Found at i:51115501 original size:43 final size:43
Alignment explanation
Indices: 51115435--51115559 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 43
51115425 GAAACATTAT
* * * *
51115435 CAGAACTAGAATCAAAATGAGAATCAAAATCAGAATCAAGTGA
1 CAGAATTAGAATCAGAATCAGAATCAGAATCAGAATCAAGTGA
* *
51115478 CAGAATTAGAATCAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATTAGAATCAGAATCAGAATCAGAATCAGAATCAAGTGA
* *
51115521 CAGAATCAGAATCAGTATCAGGTAAT-AGAATCAGAATCA
1 CAGAATTAGAATCAGAATCA-G-AATCAGAATCAGAATCA
51115560 GAATGTGAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
43 55 0.77
44 13 0.18
45 3 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (43 bp):
CAGAATTAGAATCAGAATCAGAATCAGAATCAGAATCAAGTGA
Found at i:51115556 original size:31 final size:30
Alignment explanation
Indices: 51115445--51115563 Score: 118
Period size: 31 Copynumber: 3.9 Consensus size: 30
51115435 CAGAACTAGA
* * *
51115445 ATCAAAATGAGAATCAAAATCAGAATCAAGT
1 ATCAGAATTAGAATCAGAATCAGAATC-AGT
*
51115476 GA-CAGAATTAGAATCAGAATCAGAATCAGA
1 -ATCAGAATTAGAATCAGAATCAGAATCAGT
*
51115506 ATCAGAATTAG-GTGACAGAATCAGAATCAGT
1 ATCAGAATTAGAAT--CAGAATCAGAATCAGT
51115537 ATCAGGTAA-TAGAATCAGAATCAGAAT
1 ATCA-G-AATTAGAATCAGAATCAGAAT
51115564 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
29 2 0.03
30 11 0.15
31 53 0.72
32 5 0.07
33 3 0.04
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGAATCAGAATCAGAATCAGT
Found at i:51115819 original size:22 final size:22
Alignment explanation
Indices: 51115791--51115846 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
51115781 AACGGCATAG
51115791 AGCCATAATCAGGTTGCCACAA
1 AGCCATAATCAGGTTGCCACAA
* * *
51115813 AGCCATACGT-AGGTTGGCGCAA
1 AGCCATA-ATCAGGTTGCCACAA
*
51115835 AGCCAAAATCAG
1 AGCCATAATCAG
51115847 AATAATTGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 25 0.93
23 1 0.04
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (22 bp):
AGCCATAATCAGGTTGCCACAA
Found at i:51116393 original size:27 final size:27
Alignment explanation
Indices: 51116363--51116521 Score: 167
Period size: 27 Copynumber: 5.9 Consensus size: 27
51116353 ACAAAATGGA
* * *
51116363 AATTTTACCCTGCAAGGGTATCTCGGT
1 AATTCTACCCTACAAGGGTATTTCGGT
* *
51116390 AATTCTACCCTAC-AGTGGCATTTTGGT
1 AATTCTACCCTACAAG-GGTATTTCGGT
*
51116417 ATTTCTACCCTACAAGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGGT
* **
51116444 AATTCTACCCTACAGGGGTATTTCAAT
1 AATTCTACCCTACAAGGGTATTTCGGT
* * **
51116471 TATTCTACCCTACAGGGGTATTTCACT
1 AATTCTACCCTACAAGGGTATTTCGGT
* *
51116498 AATTCTACCCTATAGGGGTATTTC
1 AATTCTACCCTACAAGGGTATTTC
51116522 AATAATTTTG
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.02
27 110 0.96
28 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.36
Consensus pattern (27 bp):
AATTCTACCCTACAAGGGTATTTCGGT
Found at i:51116433 original size:54 final size:54
Alignment explanation
Indices: 51116364--51116525 Score: 193
Period size: 54 Copynumber: 3.0 Consensus size: 54
51116354 CAAAATGGAA
* * * ***
51116364 ATTT-TACCCTGCAAGGGTATCTCGGTAATTCTACCCTACAGTGGCATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGCATTTCAAT
*
51116417 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGCATTTCAAT
* ** * *
51116471 -TATTCTACCCTACAGGGGTATTTCACTAATTCTACCCTATAGGGGTATTTCAAT
1 AT-TTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGCATTTCAAT
51116525 A
1 A
51116526 ATTTTGTAAA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 5 0.05
54 90 0.95
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGCATTTCAAT
Found at i:51116522 original size:27 final size:27
Alignment explanation
Indices: 51116389--51116528 Score: 172
Period size: 27 Copynumber: 5.2 Consensus size: 27
51116379 GGTATCTCGG
* * ***
51116389 TAATTCTACCCTACAGTGGCATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAA
* * **
51116416 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAA
51116443 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
* *
51116470 TTATTCTACCCTACAGGGGTATTTCAC
1 TAATTCTACCCTACAGGGGTATTTCAA
*
51116497 TAATTCTACCCTATAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
51116524 TAATT
1 TAATT
51116529 TTGTAAACTA
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:51118538 original size:6 final size:6
Alignment explanation
Indices: 51118529--51118620 Score: 73
Period size: 6 Copynumber: 14.8 Consensus size: 6
51118519 AATTAAAATG
* *
51118529 AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGAATC AG-GTGAC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAAT--C
* *
51118579 AGAATC AAAATC AGTATC AGGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
51118621 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
5 4 0.06
6 53 0.77
7 9 0.13
8 3 0.04
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:51118562 original size:25 final size:25
Alignment explanation
Indices: 51118529--51118620 Score: 157
Period size: 25 Copynumber: 3.7 Consensus size: 25
51118519 AATTAAAATG
51118529 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
51118554 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* * *
51118579 AGAATCAAAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
51118604 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
51118621 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:51119443 original size:27 final size:27
Alignment explanation
Indices: 51119413--51119544 Score: 88
Period size: 27 Copynumber: 4.9 Consensus size: 27
51119403 GGGGCAAAAT
*
51119413 GGTAATTTTACCCCACAAGAGTATCTC
1 GGTAATTTTACCCTACAAGAGTATCTC
* * * *
51119440 GGTAATTCTACCCTACAGGGGTA-CTTT
1 GGTAATTTTACCCTACAAGAGTATC-TC
* * *
51119467 GGT-ATTTCTACCCTGCAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGAGTATCTC
* * * *
51119494 GGTAATTCTAGCCTACAGGAGTATTTC
1 GGTAATTTTACCCTACAAGAGTATCTC
** * *
51119521 AATAATTTTACCCCACAAGCGTAT
1 GGTAATTTTACCCTACAAGAGTAT
51119545 TTTAGTAATT
Statistics
Matches: 79, Mismatches: 22, Indels: 8
0.72 0.20 0.07
Matches are distributed among these distances:
26 4 0.05
27 72 0.91
28 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGAGTATCTC
Found at i:51119554 original size:54 final size:54
Alignment explanation
Indices: 51119415--51119546 Score: 151
Period size: 54 Copynumber: 2.4 Consensus size: 54
51119405 GGCAAAATGG
* * **
51119415 TAATTTTACCCCACAAGAGTATCTCGGTAATTCTACCCTACAGGGGTACTTTGG
1 TAATTTTACCCCACAAGAGTATTTCGGTAATTCTACCCTACAGGAGTACTTTAA
** * *
51119469 T-ATTTCTACCCTGCAAGGGTATTTCGGTAATTCTAGCCTACAGGAGTA-TTTCAA
1 TAATTT-TACCCCACAAGAGTATTTCGGTAATTCTACCCTACAGGAGTACTTT-AA
*
51119523 TAATTTTACCCCACAAGCGTATTT
1 TAATTTTACCCCACAAGAGTATTT
51119547 TAGTAATTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
53 7 0.11
54 53 0.83
55 4 0.06
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.34
Consensus pattern (54 bp):
TAATTTTACCCCACAAGAGTATTTCGGTAATTCTACCCTACAGGAGTACTTTAA
Found at i:51121652 original size:25 final size:25
Alignment explanation
Indices: 51121633--51121712 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
51121623 AATCAATATG
*
51121633 AGAATCAGGTGACAGAATCAGAATC
1 AGAATAAGGTGACAGAATCAGAATC
51121658 AGAATAAGGTGACAGAATCAGAATC
1 AGAATAAGGTGACAGAATCAGAATC
* * * *
51121683 AGTATCAGGTAATAGAATCAGAATC
1 AGAATAAGGTGACAGAATCAGAATC
51121708 AGAAT
1 AGAAT
51121713 GTGAATGCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.19
Consensus pattern (25 bp):
AGAATAAGGTGACAGAATCAGAATC
Found at i:51121656 original size:6 final size:6
Alignment explanation
Indices: 51121645--51121712 Score: 59
Period size: 6 Copynumber: 11.0 Consensus size: 6
51121635 AATCAGGTGA
* * *
51121645 CAGAAT CAGAAT CAGAAT AAG-GT GACAGAAT CAGAAT CAGTAT CAGGTAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT --CAGAAT CAGAAT CAGAAT CA-G-AAT
51121696 -AGAAT CAGAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT
51121713 GTGAATGCAA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
5 4 0.08
6 39 0.78
7 4 0.08
8 3 0.06
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:51121964 original size:22 final size:22
Alignment explanation
Indices: 51121939--51121994 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
51121929 AACGGTACAC
51121939 AGCCATAATCAGGTTGCCACAA
1 AGCCATAATCAGGTTGCCACAA
* * *
51121961 AGCCAT-ATGTAGGTTGGCGCAA
1 AGCCATAAT-CAGGTTGCCACAA
*
51121983 AGCCAAAATCAG
1 AGCCATAATCAG
51121995 AATAATTGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 2 0.07
22 23 0.85
23 2 0.07
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (22 bp):
AGCCATAATCAGGTTGCCACAA
Found at i:51122641 original size:27 final size:27
Alignment explanation
Indices: 51122540--51122632 Score: 186
Period size: 27 Copynumber: 3.4 Consensus size: 27
51122530 ATCTCGGTAA
51122540 TTCTACCCTACAGGGACATTTCGATAT
1 TTCTACCCTACAGGGACATTTCGATAT
51122567 TTCTACCCTACAGGGACATTTCGATAT
1 TTCTACCCTACAGGGACATTTCGATAT
51122594 TTCTACCCTACAGGGACATTTCGATAT
1 TTCTACCCTACAGGGACATTTCGATAT
51122621 TTCTACCCTACA
1 TTCTACCCTACA
51122633 AGGGTATTTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (27 bp):
TTCTACCCTACAGGGACATTTCGATAT
Found at i:51122669 original size:54 final size:54
Alignment explanation
Indices: 51122522--51122653 Score: 178
Period size: 54 Copynumber: 2.4 Consensus size: 54
51122512 ATTTTACCTC
* **
51122522 ACAAGGGTATCTCGGTAATTCTACCCTACAGGGACATTTCGATATTTCTACCCT
1 ACAAGGGTATTTTAGTAATTCTACCCTACAGGGACATTTCGATATTTCTACCCT
* * *
51122576 AC-AGGG-ACATTTCGATATTTCTACCCTACAGGGACATTTCGATATTTCTACCCT
1 ACAAGGGTA-TTTTAG-TAATTCTACCCTACAGGGACATTTCGATATTTCTACCCT
51122630 ACAAGGGTATTTTAGTAATTCTAC
1 ACAAGGGTATTTTAGTAATTCTAC
51122654 GTTACAGGAG
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
52 1 0.02
53 6 0.09
54 50 0.76
55 8 0.12
56 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (54 bp):
ACAAGGGTATTTTAGTAATTCTACCCTACAGGGACATTTCGATATTTCTACCCT
Found at i:51124704 original size:37 final size:37
Alignment explanation
Indices: 51124663--51124749 Score: 111
Period size: 37 Copynumber: 2.4 Consensus size: 37
51124653 TATCAGAACT
*
51124663 AGAATCAAAATGACAATCAAAATCAAAATCAGGTGAC
1 AGAATCAAAATCACAATCAAAATCAAAATCAGGTGAC
* * * * *
51124700 AGAATCAAAATCAGACTCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCACAATCAAAATCAAAATCAGGTGAC
*
51124737 AGAATCAGAATCA
1 AGAATCAAAATCA
51124750 GAATGTGAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.17
Consensus pattern (37 bp):
AGAATCAAAATCACAATCAAAATCAAAATCAGGTGAC
Found at i:51124707 original size:19 final size:19
Alignment explanation
Indices: 51124683--51124750 Score: 77
Period size: 19 Copynumber: 3.6 Consensus size: 19
51124673 TGACAATCAA
51124683 AATCAAAATCAGGTGACAG
1 AATCAAAATCAGGTGACAG
*
51124702 AATCAAAATCAGACT--CAG
1 AATCAAAATCAG-GTGACAG
* *
51124720 AATCAGAATTAGGTGACAG
1 AATCAAAATCAGGTGACAG
*
51124739 AATCAGAATCAG
1 AATCAAAATCAG
51124751 AATGTGAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
17 1 0.02
18 13 0.32
19 26 0.63
20 1 0.02
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (19 bp):
AATCAAAATCAGGTGACAG
Found at i:51124722 original size:18 final size:18
Alignment explanation
Indices: 51124654--51124724 Score: 56
Period size: 18 Copynumber: 3.9 Consensus size: 18
51124644 AAGAAACATT
51124654 ATCAGAACT-AGAATCAAA
1 ATCAG-ACTCAGAATCAAA
* * * *
51124672 ATGACAATCAAAATCAAA
1 ATCAGACTCAGAATCAAA
*
51124690 ATCAG-GTGACAGAATCAAA
1 ATCAGACT--CAGAATCAAA
51124709 ATCAGACTCAGAATCA
1 ATCAGACTCAGAATCA
51124725 GAATTAGGTG
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
17 3 0.08
18 22 0.55
19 14 0.35
20 1 0.03
ACGTcount: A:0.52, C:0.18, G:0.13, T:0.17
Consensus pattern (18 bp):
ATCAGACTCAGAATCAAA
Found at i:51125046 original size:22 final size:22
Alignment explanation
Indices: 51125020--51125073 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
51125010 TGGTACACAA
51125020 CCATAATCAGGTTGGCACAAAG
1 CCATAATCAGGTTGGCACAAAG
* *
51125042 CCAT-ATGTAGGTTGGCGCAAAG
1 CCATAAT-CAGGTTGGCACAAAG
*
51125064 CCAAAATCAG
1 CCATAATCAG
51125074 AATAATTGGC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.08
22 22 0.85
23 2 0.08
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
CCATAATCAGGTTGGCACAAAG
Found at i:51126183 original size:40 final size:41
Alignment explanation
Indices: 51126122--51126393 Score: 349
Period size: 40 Copynumber: 6.8 Consensus size: 41
51126112 CATTTGAATG
* * *
51126122 ATATCTGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
51126162 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
51126202 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
51126242 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
51126282 TTATCCGGGCTAAGACCCGAAGGCATATGTACGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
51126322 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
51126362 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
51126394 TTGTGGTTAT
Statistics
Matches: 202, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.01
40 194 0.96
41 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:51126345 original size:120 final size:120
Alignment explanation
Indices: 51126132--51126413 Score: 485
Period size: 120 Copynumber: 2.4 Consensus size: 120
51126122 ATATCTGGGC
* * * *
51126132 TAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATATGTACGAG
*
51126197 TTGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
66 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
51126252 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATATGTACGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATATGTACGAG
51126317 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
66 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
* * *
51126372 TAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
51126414 ATTCTGAAGA
Statistics
Matches: 154, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 6 0.04
120 148 0.96
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATATGTACGAG
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
Found at i:51133482 original size:40 final size:40
Alignment explanation
Indices: 51133421--51133692 Score: 323
Period size: 40 Copynumber: 6.8 Consensus size: 40
51133411 CATTTGAATG
* * * *
51133421 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* **
51133461 TTATCCGGGCTAAGACCCGAAGGTGTTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
51133501 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCAAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
51133541 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
51133581 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
51133621 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
51133661 ATACCCGGGTTAAGACCTGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
51133693 TTGTGGTTAT
Statistics
Matches: 197, Mismatches: 32, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
39 2 0.01
40 189 0.96
41 6 0.03
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:51133649 original size:120 final size:120
Alignment explanation
Indices: 51133431--51133712 Score: 449
Period size: 120 Copynumber: 2.4 Consensus size: 120
51133421 ATATCTGGGC
* * * **
51133431 TAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGTGTTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
51133496 TTGATATATCCGGGCTAAGACTCGAAGGCATTTGTGCAAGTTGCTATACCCGGGT
66 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATACCCGGGT
51133551 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* *
51133616 TTGATATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
66 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATACCCGGGT
* * * *
51133671 TAAGACCTGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
51133713 ATTTCGAAGA
Statistics
Matches: 150, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
119 6 0.04
120 144 0.96
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (120 bp):
TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATACCCGGGT
Found at i:51135440 original size:27 final size:27
Alignment explanation
Indices: 51135410--51135571 Score: 191
Period size: 27 Copynumber: 6.0 Consensus size: 27
51135400 GGGGCAAAAT
* * * *
51135410 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
51135437 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
51135464 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
51135491 GATAATTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
51135518 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
51135545 TGTAATTCTACCCTACACA-GGTATTTC
1 GGTAATTCTACCCTACA-AGGGTATTTC
51135572 AATAATTTTG
Statistics
Matches: 116, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:51135476 original size:54 final size:54
Alignment explanation
Indices: 51135414--51135575 Score: 211
Period size: 54 Copynumber: 3.0 Consensus size: 54
51135404 CAAAATGGTA
* * * * *
51135414 ATTT-TACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAAT
* *
51135467 ATTTCTACCCTACAAGGGTATTTCGATAATTTTACCCTACAAGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAAT
* * *
51135521 AATTCTACCCTACAGGGGTATTTCTGTAATTCTACCCTACACA-GGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACA-AGGGTATTTCAAT
51135575 A
1 A
51135576 ATTTTGTAAA
Statistics
Matches: 95, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 4 0.04
54 90 0.95
55 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAAT
Found at i:51135554 original size:81 final size:81
Alignment explanation
Indices: 51135412--51135580 Score: 250
Period size: 81 Copynumber: 2.1 Consensus size: 81
51135402 GGCAAAATGG
** *
51135412 TAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCC
1 TAATTTTACCCCACAAAGGTATCTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
*
51135477 TACA-AGGGTATTTCGA
66 TACACA-GGTATTTCAA
* * * *
51135493 TAATTTTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCTGTAATTCTACCC
1 TAATTTTACCCCACAAAGGTATCTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
51135558 TACACAGGTATTTCAA
66 TACACAGGTATTTCAA
51135574 TAATTTT
1 TAATTTT
51135581 GTAAATCGAG
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 78 0.99
82 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (81 bp):
TAATTTTACCCCACAAAGGTATCTCAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
TACACAGGTATTTCAA
Found at i:51135605 original size:81 final size:81
Alignment explanation
Indices: 51135438--51135608 Score: 204
Period size: 81 Copynumber: 2.1 Consensus size: 81
51135428 AGGTATCTCG
* * *
51135438 GTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGATAATTTTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAATAATTTTACA
* ***
51135503 CTACAAGGGTATTTCA
66 ATACAAGGGTAAAACA
* *
51135519 ATAATTCTACCCTACAGGGGTATTTCTGTAATTCTACCCTACACA-GGTATTTCAATAATTTTGT
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACA-AGGGTATTTCAATAA-TTT-T
*
51135583 A-AAT-CGAGGGTAAAACA
63 ACAATACAAGGGTAAAACA
51135600 GTAATTCTA
1 GTAATTCTA
51135609 TAAATCGGGG
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
81 69 0.91
82 5 0.07
83 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAATAATTTTACA
ATACAAGGGTAAAACA
Found at i:51140736 original size:19 final size:23
Alignment explanation
Indices: 51140706--51140752 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 23
51140696 ATAAAATAAA
51140706 TAATGATAATGATA-ATA-ATAA
1 TAATGATAATGATATATATATAA
51140727 -AATGAT-ATGATATATATATAA
1 TAATGATAATGATATATATATAA
51140748 TAATG
1 TAATG
51140753 TTTGATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 6 0.26
20 9 0.39
21 4 0.17
22 4 0.17
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (23 bp):
TAATGATAATGATATATATATAA
Found at i:51141103 original size:49 final size:48
Alignment explanation
Indices: 51141021--51141178 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
51141011 CTTACTTTGA
*
51141021 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
51141068 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
51141117 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
51141166 GAATGTGATAAGT
1 GAATGTGA-AAGT
51141179 CCCGAAGGGC
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 13 0.12
49 89 0.84
50 4 0.04
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:51141352 original size:37 final size:37
Alignment explanation
Indices: 51141296--51141374 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51141286 CCGAGCTCTA
* * *
51141296 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51141333 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51141370 AAGAC
1 AAGAC
51141375 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51144220 original size:25 final size:25
Alignment explanation
Indices: 51144172--51144246 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 25
51144162 TGAGGAGGAC
*
51144172 CATTTCACAACTCATGTGAGCATTTA
1 CATTT-ACAACTCGTGTGAGCATTTA
* *
51144198 CATTTACAGCTCGTGTGAACATTTA
1 CATTTACAACTCGTGTGAGCATTTA
**
51144223 CAGATACAACTCGTGTGAGCATTT
1 CATTTACAACTCGTGTGAGCATTT
51144247 TCTCGCGTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 37 0.88
26 5 0.12
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.33
Consensus pattern (25 bp):
CATTTACAACTCGTGTGAGCATTTA
Found at i:51144327 original size:13 final size:13
Alignment explanation
Indices: 51144309--51144369 Score: 52
Period size: 13 Copynumber: 4.5 Consensus size: 13
51144299 ACGAATGAGT
51144309 TATATGAAATGGC
1 TATATGAAATGGC
*
51144322 TATATGTAAATTGAC
1 TATATG-AAA-TGGC
51144337 T-TATGAAATGGAC
1 TATATGAAATGG-C
* *
51144350 ATTTATGAAATTGC
1 -TATATGAAATGGC
51144364 TATATG
1 TATATG
51144370 GTATTTGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
12 2 0.05
13 15 0.38
14 9 0.23
15 13 0.33
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (13 bp):
TATATGAAATGGC
Found at i:51145957 original size:40 final size:40
Alignment explanation
Indices: 51145874--51146136 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
51145864 TTGAATGCTG
* * * * * *
51145874 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
51145914 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
51145954 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
51145994 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
51146034 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
51146074 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
51146113 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51146137 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:51146156 original size:79 final size:80
Alignment explanation
Indices: 51145913--51146171 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
51145903 AAGTGAATAT
* * * * * * *
51145913 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
51145977 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
51145993 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
51146058 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
51146073 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
51146137 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
51146152 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
51146172 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:51153257 original size:40 final size:40
Alignment explanation
Indices: 51153174--51153397 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
51153164 TTGAATGCTG
* * * * * *
51153174 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
51153214 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
51153254 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
51153294 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
51153334 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
51153374 TCCGGGATATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51153398 TGAACGAGGA
Statistics
Matches: 164, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 155 0.95
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:51153417 original size:80 final size:80
Alignment explanation
Indices: 51153248--51153432 Score: 248
Period size: 80 Copynumber: 2.3 Consensus size: 80
51153238 TGTGCGAGAT
* *
51153248 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTATTAAATCCGGGATAAGTCCCGAAG
** *
51153313 GCATTCGTGCGAGTT
66 GCATTCGAACGAGTG
* * *
51153328 ATTAAATCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAATCCGGGATATGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTATTAAATCCGGGATAAGTCCCGAAG
*
51153393 GCATTTGAACGAG-G
66 GCATTCGAACGAGTG
* *
51153407 AGCTATATCC-GGTTAAATCCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
51153433 TACGTGATTT
Statistics
Matches: 92, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 16 0.17
80 76 0.83
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTATTAAATCCGGGATAAGTCCCGAAG
GCATTCGAACGAGTG
Found at i:51153417 original size:120 final size:120
Alignment explanation
Indices: 51153174--51153432 Score: 265
Period size: 120 Copynumber: 2.2 Consensus size: 120
51153164 TTGAATGCTG
* * * ** *
51153174 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCAGTC
* ** * *
51153239 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGATACTAAATCCGGGATAAGTCCCGAAGGCATTCGAACGAGTGACTAAA
* * * *
51153294 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAG
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCTAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCAG
* ** * * *
51153357 TCGTGCGAGTTGTTAAATCCGGGATATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TCGTGCGAGATACTAAATCCGGGATAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAA
*
51153414 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51153433 TACGTGATTT
Statistics
Matches: 114, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
119 17 0.15
120 91 0.80
121 6 0.05
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCAGTC
GTGCGAGATACTAAATCCGGGATAAGTCCCGAAGGCATTCGAACGAGTGACTAAA
Found at i:51157834 original size:100 final size:101
Alignment explanation
Indices: 51157660--51157846 Score: 304
Period size: 100 Copynumber: 1.9 Consensus size: 101
51157650 AGCTATCTGG
* **
51157660 TACGCATAGTAGCCTGCACTTAGTACTACGCACGTGACCTAACCATCTGATACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACCATCTGATACACGTAGTAGCCT
51157725 GCACTTAGTACTACACACGTGATCGAAGTTACCGGC
66 GCACTTAGTACTACACACGTGATCGAAGTTACCGGC
* * **
51157761 TACGCATAGTAGCCTGCACTTTGTACTACACATGCAACC-AATTATCTGATACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACCATCTGATACACGTAGTAGCCT
51157825 GCACTTAGTACTACACACGTGA
66 GCACTTAGTACTACACACGTGA
51157847 CCTCACAATA
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
100 45 0.57
101 34 0.43
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (101 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACACGCAACCTAACCATCTGATACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTTACCGGC
Found at i:51157836 original size:49 final size:48
Alignment explanation
Indices: 51157666--51157841 Score: 183
Period size: 49 Copynumber: 3.5 Consensus size: 48
51157656 CTGGTACGCA
* **
51157666 TAGTAGCCTGCACTTAGTACTACGCACGTG-ACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTA--CACATGAACC-AATTATCTGATACACG
* * * * * * *
51157716 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTACCGGCTACGCA
1 TAGTAGCCTGCACTTAGTACTACACA--TGAACCAA-TTATCTGATACACG
*
51157767 TAGTAGCCTGCACTTTGTACTACACATGCAACCAATTATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATG-AACCAATTATCTGATACACG
51157816 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
51157842 CGTGACCTCA
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
48 3 0.03
49 36 0.35
50 30 0.29
51 33 0.32
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGAACCAATTATCTGATACACG
Found at i:51167965 original size:49 final size:49
Alignment explanation
Indices: 51167903--51168143 Score: 284
Period size: 49 Copynumber: 4.9 Consensus size: 49
51167893 CAAAGCTATA
* * * * * * *
51167903 TGGTACGCATAGTAGCTTGCACTTAGTCCTACACATGGGACCAATTATC
1 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAATTATC
**
51167952 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACC-AATTATC
* * *
51168002 TGATACACGTAGTAGCCTACACTTAGTACTACACACGTAATCGAAGTTATC
1 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGA-CCAA-TTATC
* * * * *
51168053 GGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATC
1 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAATTATC
* *
51168102 CGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACC
51168144 TCATAATAGA
Statistics
Matches: 161, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 76 0.47
50 48 0.30
51 37 0.23
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCAATTATC
Found at i:51168085 original size:101 final size:100
Alignment explanation
Indices: 51167947--51168139 Score: 287
Period size: 101 Copynumber: 1.9 Consensus size: 100
51167937 ATGGGACCAA
* * * *
51167947 TTATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACGT
1 TTATCGGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACC-AACCATCCGATACACGT
51168012 AGTAGCCTACACTTAGTACTACACACGTAATCGAAG
65 AGTAGCCTACACTTAGTACTACACACGTAATCGAAG
* * ** *
51168048 TTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGTA
1 TTATCGGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCAACCATCCGATACACGTA
*
51168113 GTAGCCTGCACTTAGTACTACACACGT
66 GTAGCCTACACTTAGTACTACACACGT
51168140 GACCTCATAA
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
100 40 0.49
101 42 0.51
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (100 bp):
TTATCGGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCAACCATCCGATACACGTA
GTAGCCTACACTTAGTACTACACACGTAATCGAAG
Found at i:51173910 original size:8 final size:8
Alignment explanation
Indices: 51173897--51173939 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
51173887 GTAGAACGGC
51173897 AAAAGCCG
1 AAAAGCCG
*
51173905 AAAAGCTG
1 AAAAGCCG
*
51173913 AAAAGCTG
1 AAAAGCCG
51173921 AAAAGCCG
1 AAAAGCCG
51173929 AAAAGCCG
1 AAAAGCCG
51173937 AAA
1 AAA
51173940 GAATGGCCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.53, C:0.19, G:0.23, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:51184105 original size:27 final size:26
Alignment explanation
Indices: 51184075--51184173 Score: 74
Period size: 26 Copynumber: 3.8 Consensus size: 26
51184065 GGAGGAAGTG
**
51184075 TACTATTACTGGTGGCTTTGCCACAT
1 TACTATTACTGGCAGCTTTGCCACAT
* **
51184101 ATACTAATACTGGCAGCTTTGCTGCAT
1 -TACTATTACTGGCAGCTTTGCCACAT
* * ***
51184128 TACTGTTACTGGAAGCTTTGTTGCGA-
1 TACTATTACTGGCAGCTTTGCCAC-AT
*
51184154 TATTATTACTGGCAGCTTTG
1 TACTATTACTGGCAGCTTTG
51184174 TTGCTATATT
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
26 37 0.63
27 22 0.37
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGCCACAT
Found at i:51184174 original size:26 final size:25
Alignment explanation
Indices: 51184108--51184183 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 25
51184098 CATATACTAA
* * *
51184108 TACTGGCAGCTTTGCTGCATTACTGT
1 TACTGGCAGCTTTGTTGCA-TATTAT
*
51184134 TACTGGAAGCTTTGTTGCGATATTAT
1 TACTGGCAGCTTTGTTGC-ATATTAT
51184160 TACTGGCAGCTTTGTTGCTATATT
1 TACTGGCAGCTTTGTTGC-ATATT
51184184 GGTGTGTTGG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 42 0.98
27 1 0.02
ACGTcount: A:0.18, C:0.17, G:0.22, T:0.42
Consensus pattern (25 bp):
TACTGGCAGCTTTGTTGCATATTAT
Found at i:51188387 original size:27 final size:28
Alignment explanation
Indices: 51188328--51188392 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 28
51188318 CTCTAGCTAT
*
51188328 TTTCATGATTATTTATGGGGCCCTAGGG
1 TTTCATGATTATTTATGGGGACCTAGGG
51188356 TTTCATGATTATTTAT-GGGACCTAGGG
1 TTTCATGATTATTTATGGGGACCTAGGG
51188383 TTTCATGATT
1 TTTCATGATT
51188393 GAGAAGGCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.20, C:0.12, G:0.25, T:0.43
Consensus pattern (28 bp):
TTTCATGATTATTTATGGGGACCTAGGG
Found at i:51193391 original size:8 final size:8
Alignment explanation
Indices: 51193378--51193405 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
51193368 TAAAAAGAAA
51193378 TAAATACT
1 TAAATACT
51193386 TAAATACT
1 TAAATACT
51193394 TAAATACT
1 TAAATACT
51193402 TAAA
1 TAAA
51193406 AAAACCAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.36
Consensus pattern (8 bp):
TAAATACT
Found at i:51194250 original size:28 final size:29
Alignment explanation
Indices: 51194207--51194321 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
51194197 TACCTATATC
** *
51194207 TGGCCCATTAAACCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
51194235 TGGCCCATTTGGCCCAAATCACCAGT-ATA
1 TGGCCCATTAGGCCCAAATCA-CATTCATA
* *
51194264 TGGCCAATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
51194293 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
51194321 T
1 T
51194322 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 27 0.38
29 43 0.60
30 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:51194563 original size:16 final size:16
Alignment explanation
Indices: 51194538--51194576 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
51194528 ACACTTTTGG
*
51194538 CTTTTTGGCATTTCAA
1 CTTTTCGGCATTTCAA
51194554 CTTTTCGGCATTTCAA
1 CTTTTCGGCATTTCAA
*
51194570 CGTTTCG
1 CTTTTCG
51194577 ACTTTTGCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (16 bp):
CTTTTCGGCATTTCAA
Found at i:51195321 original size:42 final size:42
Alignment explanation
Indices: 51195269--51195391 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 42
51195259 GATTTGTAAT
*
51195269 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATGA
* * * *
51195311 TTTCATGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATATGA
* * *
51195354 TTACATGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 TTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
51195392 GAGCTTATGA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
42 34 0.49
43 35 0.51
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATGA
Found at i:51199311 original size:21 final size:21
Alignment explanation
Indices: 51199287--51199338 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
51199277 TATGAAGGCC
51199287 TTAAATGGTAAATAAACAATT
1 TTAAATGGTAAATAAACAATT
*
51199308 TTAAATGGTAAATAAACCATT
1 TTAAATGGTAAATAAACAATT
51199329 TTAAATGGTA
1 TTAAATGGTA
51199339 GTGGACATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.35
Consensus pattern (21 bp):
TTAAATGGTAAATAAACAATT
Found at i:51205305 original size:23 final size:22
Alignment explanation
Indices: 51205277--51205319 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
51205267 TAAAAATAAG
51205277 CTTAAAGA-AAAATAAAGAGTAGT
1 CTTAAA-ATAAAATAAA-AGTAGT
51205300 CTTAAAATAAAATAAAAGTA
1 CTTAAAATAAAATAAAAGTA
51205320 AAAACATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.23
Consensus pattern (22 bp):
CTTAAAATAAAATAAAAGTAGT
Found at i:51207065 original size:13 final size:13
Alignment explanation
Indices: 51207047--51207072 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51207037 TAGGTGGAGG
51207047 GCACGGGCGTGTC
1 GCACGGGCGTGTC
51207060 GCACGGGCGTGTC
1 GCACGGGCGTGTC
51207073 TCATGCCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.31, G:0.46, T:0.15
Consensus pattern (13 bp):
GCACGGGCGTGTC
Found at i:51211938 original size:27 final size:27
Alignment explanation
Indices: 51211904--51212077 Score: 215
Period size: 27 Copynumber: 6.4 Consensus size: 27
51211894 TAAATTGTAC
*
51211904 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
51211931 TGCACTAAGTGTGCGATTTGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51211957 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51211985 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51212013 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51212040 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
51212067 AGCACTAAGTG
1 AGCACTAAGTG
51212078 AGCGGACTCA
Statistics
Matches: 127, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51212018 original size:82 final size:81
Alignment explanation
Indices: 51211905--51212060 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
51211895 AAATTGTACA
* *
51211905 GCACTAAGTGTGCGAATTGACTATGTTGCACTAAGTGTGCGATTTGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGAATACGTA-GCACTAAGTG
51211969 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* *
51211986 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGATTTGAATACGTAGCACTAAGTG
*
51212051 TGCGAGTTGA
65 TGCGAATTGA
51212061 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51212072 original size:82 final size:81
Alignment explanation
Indices: 51211901--51212077 Score: 239
Period size: 82 Copynumber: 2.2 Consensus size: 81
51211891 GAGTAAATTG
* *
51211901 TACAGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGTGTGCGATTTGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGAATACGATGCACTAA
51211966 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
51211982 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGATTTGAATACGAT-GCACT
* **
51212046 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
51212064 TATAGCACTAAGTG
1 TACAGCACTAAGTG
51212078 AGCGGACTCA
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51219190 original size:27 final size:27
Alignment explanation
Indices: 51219156--51219329 Score: 215
Period size: 27 Copynumber: 6.4 Consensus size: 27
51219146 TAAATTGTAC
51219156 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
51219183 TGCACTAAGTGTGCGATTTGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51219209 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51219237 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51219265 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51219292 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51219319 AGCACTGAGTG
1 AGCACTAAGTG
51219330 AGCGGACTCA
Statistics
Matches: 127, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51219270 original size:82 final size:81
Alignment explanation
Indices: 51219157--51219312 Score: 251
Period size: 82 Copynumber: 1.9 Consensus size: 81
51219147 AAATTGTACA
* *
51219157 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGATTTGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGAATACGTA-GCACTAAGTG
51219221 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
*
51219238 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGAATACGTAGCACTAAGTG
*
51219303 TGCGAGTTGA
65 TGCGAATTGA
51219313 TTATATAGCA
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 15 0.22
82 53 0.77
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51221818 original size:28 final size:28
Alignment explanation
Indices: 51221786--51221846 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
51221776 AATGACCAAA
* *
51221786 ATACCCCTGAGGGGTAAAAATTACTATT
1 ATACCCCTAAGGGGTAAAAATGACTATT
* * *
51221814 CTACCCCTAATGGGTGAAAATGACTATT
1 ATACCCCTAAGGGGTAAAAATGACTATT
51221842 ATACC
1 ATACC
51221847 TTAGAGATAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (28 bp):
ATACCCCTAAGGGGTAAAAATGACTATT
Found at i:51229416 original size:79 final size:81
Alignment explanation
Indices: 51229295--51229477 Score: 248
Period size: 79 Copynumber: 2.3 Consensus size: 81
51229285 GCTACTCGTT
* *
51229295 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
51229359 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
51229375 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
51229439 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
51229455 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
51229478 ACATCATTCA
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.03
79 56 0.62
80 32 0.35
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:51229473 original size:40 final size:40
Alignment explanation
Indices: 51229276--51229477 Score: 250
Period size: 40 Copynumber: 5.1 Consensus size: 40
51229266 CGGAATTTAA
** *
51229276 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51229316 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51229356 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51229396 CCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51229435 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51229475 CCG
1 CCG
51229478 ACATCATTCA
Statistics
Matches: 144, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
38 3 0.02
39 34 0.24
40 96 0.67
41 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51236443 original size:29 final size:29
Alignment explanation
Indices: 51236408--51236481 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
51236398 GTTGTGAGAT
* *
51236408 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
51236437 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
51236466 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51236482 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:51251535 original size:15 final size:15
Alignment explanation
Indices: 51251507--51251542 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
51251497 CAATCTTTAT
51251507 AAAACTTTGTTTTTG
1 AAAACTTTGTTTTTG
51251522 AAAATCTTTGTTTTTG
1 AAAA-CTTTGTTTTTG
*
51251538 TAAAC
1 AAAAC
51251543 CCATTCCACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.50
Consensus pattern (15 bp):
AAAACTTTGTTTTTG
Found at i:51252542 original size:27 final size:26
Alignment explanation
Indices: 51252502--51252613 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
51252492 AGCATGGCTG
* * * *
51252502 CCAGAACAAATAATGTGACGGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
51252528 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
51252556 CCAGAATAGATATATGTGGCAGTGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
51252583 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
51252610 CCAG
1 CCAG
51252614 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 50 0.69
28 16 0.22
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:51256867 original size:12 final size:13
Alignment explanation
Indices: 51256850--51256887 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
51256840 ATCCTAGAAT
51256850 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
51256862 ATTAAGAACACATA
1 ATTAAGAACA-AGA
51256876 ATTAAGAACAAG
1 ATTAAGAACAAG
51256888 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:51262582 original size:27 final size:28
Alignment explanation
Indices: 51262552--51262608 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
51262542 ATTTTTGATG
51262552 AAATGAGCTATTTG-GG-CTAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGTGA
*
51262579 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGCTTTTG-AGGACTAATTTGTGA
51262608 A
1 A
51262609 TTTAACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (28 bp):
AAATGAGCTTTTGAGGACTAATTTGTGA
Found at i:51263132 original size:42 final size:42
Alignment explanation
Indices: 51263013--51263133 Score: 111
Period size: 44 Copynumber: 2.8 Consensus size: 42
51263003 CATTGGTATT
* *
51263013 GATCTAGATTATTGTATAAGACCGTGTCTGGGACACTGGCATC
1 GATCT-GATTTTTGTATAAGACCATGTCTGGGACACTGGCATC
* ** * *
51263056 GATTTGAAATTTACGTGTAAGACCATGTTTGGGACA-TCGGCATC
1 GATCTG--ATTTTTGTATAAGACCATGTCTGGGACACT-GGCATC
*
51263100 GTATCTG-TTTTTGTATAAGACCCTGTCTGGGACA
1 G-ATCTGATTTTTGTATAAGACCATGTCTGGGACA
51263134 GAGGCATTGA
Statistics
Matches: 61, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
42 23 0.38
43 5 0.08
44 29 0.48
45 4 0.07
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
GATCTGATTTTTGTATAAGACCATGTCTGGGACACTGGCATC
Found at i:51263140 original size:42 final size:42
Alignment explanation
Indices: 51263013--51263149 Score: 107
Period size: 42 Copynumber: 3.2 Consensus size: 42
51263003 CATTGGTATT
* * *
51263013 GATCTAGATTATTGTATAAGACCGTGTCTGGGACACTGGCATC
1 GATCT-GATTTTTGTATAAGACCATGTCTGGGACACAGGCATC
* ** * *
51263056 GATTTGAAATTTACGTGTAAGACCATGTTTGGGACATC-GGCATC
1 GATCTG--ATTTTTGTATAAGACCATGTCTGGGACA-CAGGCATC
* * *
51263100 GTATCTG-TTTTTGTATAAGACCCTGTCTGGGACAGAGGCATT
1 G-ATCTGATTTTTGTATAAGACCATGTCTGGGACACAGGCATC
51263142 GATACTGA
1 GAT-CTGA
51263150 ATTACATGTA
Statistics
Matches: 72, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
41 2 0.03
42 32 0.44
43 4 0.06
44 29 0.40
45 5 0.07
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
GATCTGATTTTTGTATAAGACCATGTCTGGGACACAGGCATC
Found at i:51265328 original size:15 final size:15
Alignment explanation
Indices: 51265308--51265338 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51265298 TTCAAATTTA
51265308 ACATCCTTTCGGAGT
1 ACATCCTTTCGGAGT
51265323 ACATCCTTTCGGAGT
1 ACATCCTTTCGGAGT
51265338 A
1 A
51265339 GTCTACATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (15 bp):
ACATCCTTTCGGAGT
Found at i:51269435 original size:46 final size:46
Alignment explanation
Indices: 51269368--51269539 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
51269358 AACCCGCCCC
*
51269368 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
51269414 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
51269462 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* * *
51269507 TAGGTGAACTTGAACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
51269540 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 58 0.55
47 28 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:51269480 original size:93 final size:93
Alignment explanation
Indices: 51269373--51269543 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
51269363 GCCCCTAAGT
* * *
51269373 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
51269438 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
51269466 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTTGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
51269531 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51269544 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51269996 original size:30 final size:30
Alignment explanation
Indices: 51269962--51270021 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
51269952 ATTTAATATG
51269962 AACTTTGGA-AAAATTACACTTTTGCCCCTA
1 AACTTT-GACAAAATTACACTTTTGCCCCTA
* *
51269992 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTGACAAAATTACACTTTTGCCCCTA
51270022 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTGCCCCTA
Found at i:51272217 original size:36 final size:36
Alignment explanation
Indices: 51272177--51272249 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
51272167 ATGAATTTCG
51272177 AATGTCTTTTCTCATCACATTCACTTAATCAAACAT
1 AATGTCTTTTCTCATCACATTCACTTAATCAAACAT
51272213 AATGTCTTTTCTCATCACATTCACTTAATCAAACAT
1 AATGTCTTTTCTCATCACATTCACTTAATCAAACAT
51272249 A
1 A
51272250 TCAAACACAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (36 bp):
AATGTCTTTTCTCATCACATTCACTTAATCAAACAT
Found at i:51272964 original size:18 final size:19
Alignment explanation
Indices: 51272941--51272984 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
51272931 AATCAGGCCA
*
51272941 TAAAAAT-TTCGTTCAAAT
1 TAAAAATATTCATTCAAAT
*
51272959 TAAAAATATTCATTCATAT
1 TAAAAATATTCATTCAAAT
*
51272978 TCAAAAT
1 TAAAAAT
51272985 GTCCCTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (19 bp):
TAAAAATATTCATTCAAAT
Found at i:51287163 original size:14 final size:14
Alignment explanation
Indices: 51287144--51287173 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
51287134 CGATGTCCAT
51287144 TTTCTTTGAAAGTA
1 TTTCTTTGAAAGTA
51287158 TTTCTTTGAAAGTA
1 TTTCTTTGAAAGTA
51287172 TT
1 TT
51287174 GTGTCCTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.07, G:0.13, T:0.53
Consensus pattern (14 bp):
TTTCTTTGAAAGTA
Found at i:51299182 original size:79 final size:81
Alignment explanation
Indices: 51299047--51299228 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
51299037 CGAATGATGT
* * *
51299047 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
51299111 GTGTGAGTTACTA-ATT
66 GTGCGAGTTACTATA-A
* * **
51299127 TCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCATT
51299189 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
51299206 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
51299229 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.67
80 28 0.32
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:51299237 original size:40 final size:40
Alignment explanation
Indices: 51299046--51299230 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
51299036 TCGAATGATG
* * *
51299046 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAA
* * * *
51299086 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
51299126 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
51299165 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AA
*
51299206 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51299231 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 32 0.26
40 81 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
Found at i:51299252 original size:79 final size:78
Alignment explanation
Indices: 51299047--51299263 Score: 219
Period size: 79 Copynumber: 2.7 Consensus size: 78
51299037 CGAATGATGT
* *
51299047 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
* *
51299110 TGTGTGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* * *
51299127 TCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-AGCTATATCC-GGTTAAGT-CCGAAGGCATTT
51299190 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
51299206 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
51299264 TACGTGATTC
Statistics
Matches: 114, Mismatches: 14, Indels: 19
0.78 0.10 0.13
Matches are distributed among these distances:
78 3 0.03
79 66 0.58
80 45 0.39
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:51304482 original size:16 final size:16
Alignment explanation
Indices: 51304461--51304494 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
51304451 TACCGATTCT
51304461 ATTGTGTCGGATAGAG
1 ATTGTGTCGGATAGAG
51304477 ATTGTGTCGGATAGAG
1 ATTGTGTCGGATAGAG
51304493 AT
1 AT
51304495 CCGAGGTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.06, G:0.35, T:0.32
Consensus pattern (16 bp):
ATTGTGTCGGATAGAG
Found at i:51313107 original size:18 final size:19
Alignment explanation
Indices: 51313070--51313108 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
51313060 ATACCACTCA
51313070 ATGAACAACATACAAAACG
1 ATGAACAACATACAAAACG
51313089 ATGAACAACATAC-AAACG
1 ATGAACAACATACAAAACG
51313107 AT
1 AT
51313109 TAAACGCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.56, C:0.21, G:0.10, T:0.13
Consensus pattern (19 bp):
ATGAACAACATACAAAACG
Found at i:51313709 original size:40 final size:40
Alignment explanation
Indices: 51313652--51313871 Score: 277
Period size: 40 Copynumber: 5.5 Consensus size: 40
51313642 ACCCAAGCAT
* * *
51313652 CTTC-GGATTTAG-CCGGATATAACAACTCGCACAAATGG
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
51313690 CTTCGGGTCTTGGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
51313730 CTTCGGGACTTAGCCCAGATATAGTCAA-TAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
* * * *
51313770 CTTCGGGGCTTAGCCCGGGTATAGTC-ACTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
*
51313810 CTTCGGGACTTAGCCCAGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
*
51313850 TTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51313872 CATTCGAATA
Statistics
Matches: 157, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
38 4 0.03
39 7 0.04
40 143 0.91
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:51317779 original size:47 final size:47
Alignment explanation
Indices: 51317672--51317864 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
51317662 TTAGGATTTT
** * * *
51317672 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAA-GGCCC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51317718 ATGTGATGAATGTGAACATGCATTTATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51317765 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
51317812 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51317859 ATGTGA
1 ATGTGA
51317865 AATATGTATG
Statistics
Matches: 129, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
46 36 0.28
47 93 0.72
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51317820 original size:25 final size:25
Alignment explanation
Indices: 51317745--51317820 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
51317735 ATGCATTTAT
51317745 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
51317770 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
51317792 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
51317817 GTGA
1 GTGA
51317821 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:51317992 original size:98 final size:96
Alignment explanation
Indices: 51317835--51318018 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
51317825 GAACATGCAT
*
51317835 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
51317900 ATGACTAATGTGAAATATGTATGAGATATGC
66 ATGACTAATGTGAAATATGTATGAGATATGC
*
51317931 ATATGTGGTTAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
* *
51317995 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGACTAATGTGAAATATGTA
51318019 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 52 0.64
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGACTAATGTGAAATATGTATGAGATATGC
Found at i:51318034 original size:50 final size:48
Alignment explanation
Indices: 51317834--51318018 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
51317824 TGAACATGCA
51317834 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
51317882 TATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
51317930 CATATGTGGTTAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
51317980 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
51318019 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:51318076 original size:98 final size:97
Alignment explanation
Indices: 51317858--51318057 Score: 246
Period size: 98 Copynumber: 2.1 Consensus size: 97
51317848 CCGAATGGCT
*
51317858 AATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTA
1 AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTA
* * * **
51317921 TGAGATATGCATATGTGGTTAAGCCGAATGGTC
66 GGAGATATGCATATATGGTT-AGCCGAACGACC
* *
51317954 AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTA
* * * * *
51318019 GGCGATGTGCGTATATTG-T-GGCGAACGACC
66 GGAGATATGCATATATGGTTAGCCGAACGACC
51318049 AATGTGAAA
1 AATGTGAAA
51318058 GGTGTGTATT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
95 16 0.18
96 6 0.07
97 3 0.03
98 64 0.72
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (97 bp):
AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTA
GGAGATATGCATATATGGTTAGCCGAACGACC
Found at i:51318271 original size:37 final size:37
Alignment explanation
Indices: 51318163--51318271 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
51318153 GGAAATATAT
*
51318163 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
51318200 TCCGGGTAAGGCCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
51318237 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
51318272 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:51319821 original size:40 final size:40
Alignment explanation
Indices: 51319539--51319809 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
51319529 GAGAATTGAG
* *
51319539 AGTGATATATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
51319579 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
51319618 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
51319658 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
51319698 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
51319738 AGTGATGTATCTGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
51319778 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
51319810 ATCATGCTGG
Statistics
Matches: 213, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 37 0.17
40 176 0.83
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:51322959 original size:47 final size:47
Alignment explanation
Indices: 51322905--51323098 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
51322895 TTAGGATTTT
** * * *
51322905 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51322952 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51322999 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
51323046 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51323093 ATGTGA
1 ATGTGA
51323099 AATATGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51323054 original size:25 final size:25
Alignment explanation
Indices: 51322979--51323054 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
51322969 ATGCATATAT
51322979 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
51323004 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
51323026 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
51323051 GTGA
1 GTGA
51323055 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:51323228 original size:50 final size:48
Alignment explanation
Indices: 51323068--51323252 Score: 307
Period size: 48 Copynumber: 3.8 Consensus size: 48
51323058 TGAACATGCA
51323068 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
51323116 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
51323164 CATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATG
* *
51323214 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
51323253 GGCGATGTGC
Statistics
Matches: 127, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
48 82 0.65
49 4 0.03
50 41 0.32
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:51323228 original size:98 final size:96
Alignment explanation
Indices: 51323069--51323266 Score: 315
Period size: 98 Copynumber: 2.0 Consensus size: 96
51323059 GAACATGCAT
* * *
51323069 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAA
*
51323134 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTAGGAGATATGC
51323165 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCCGAATGGCCAATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGCC
* * *
51323230 AAATGGCTAGTGTGAAATATGTAGGCGATGTGC
64 AAATGGCTAATGTGAAATATGTAGGAGATATGC
51323263 ATAT
1 ATAT
51323267 ATTGTGGCCG
Statistics
Matches: 93, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 28 0.30
97 2 0.02
98 63 0.68
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAA
ATGGCTAATGTGAAATATGTAGGAGATATGC
Found at i:51323506 original size:37 final size:37
Alignment explanation
Indices: 51323398--51323506 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
51323388 GGAAATATAT
*
51323398 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
51323435 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
51323472 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
51323507 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:51330292 original size:40 final size:40
Alignment explanation
Indices: 51330235--51330455 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
51330225 ACCCAAGCAT
* * * *
51330235 CTTCGAGATTTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* * *
51330274 CTTCGGGTCTTGGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
51330314 CTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
51330354 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAACA-GC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAA-ATGC
* *
51330394 CTTCGGGACTTAGCCCGGATATTGCAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
*
51330434 CTTCGAGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51330456 CATTCGAATA
Statistics
Matches: 165, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
39 12 0.07
40 149 0.90
41 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:51335993 original size:47 final size:47
Alignment explanation
Indices: 51335917--51336128 Score: 309
Period size: 47 Copynumber: 4.5 Consensus size: 47
51335907 CTTCGGAACT
* * * * * *
51335917 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51335964 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
51336010 TCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51336058 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
51336105 TATCACATATATACACATTCACAT
1 TATCACATATATACACTTTCACAT
51336129 CACAATTATC
Statistics
Matches: 151, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
46 3 0.02
47 146 0.97
48 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:51338856 original size:34 final size:34
Alignment explanation
Indices: 51338759--51338857 Score: 105
Period size: 34 Copynumber: 2.9 Consensus size: 34
51338749 TATACTGATT
* * *
51338759 CTGTAATGGGCTTAGGCCCT-ACTGCTACTGTTA
1 CTGTAAAGGGCTAAGGCCCTAACTGCTATTGTTA
* *
51338792 CTG-AAATGGGCTCAGGCCC-AGATTGCTATTGTTA
1 CTGTAAA-GGGCTAAGGCCCTA-ACTGCTATTGTTA
*
51338826 CTGTAAAGGGCTAAGGCCCTAACTGATATTGT
1 CTGTAAAGGGCTAAGGCCCTAACTGCTATTGT
51338858 CCCTATTACT
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
32 2 0.04
33 14 0.26
34 34 0.63
35 4 0.07
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (34 bp):
CTGTAAAGGGCTAAGGCCCTAACTGCTATTGTTA
Found at i:51342767 original size:40 final size:39
Alignment explanation
Indices: 51342742--51342834 Score: 159
Period size: 39 Copynumber: 2.4 Consensus size: 39
51342732 GACTTTAAGC
*
51342742 CCGGATATATTTCCAGCACATAGCCTGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACATAGCCTGCGGACCTCAAGT
* *
51342781 CCGAATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACATAGCCTGCGGACCTCAAGT
51342820 CCGGATATGTTTCCA
1 CCGGATATGTTTCCA
51342835 AGTATCATGC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATGTTTCCAGCACATAGCCTGCGGACCTCAAGT
Found at i:51353392 original size:96 final size:96
Alignment explanation
Indices: 51353277--51353466 Score: 317
Period size: 96 Copynumber: 2.0 Consensus size: 96
51353267 GTGTCCGAGG
*
51353277 AAGTCTGTCATCAAAGGGAACGATGGAGCAGACAAGAAGCCCAAGAAACTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCAAAGGGAACAATGGAGCAGACAAGAAGCCCAAGAAACTTGGTTCGAGCAAGGG
**
51353342 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGT
66 AAAAGCCGAAGAAAAGAGGGCAAAGAGGAGT
* * *
51353373 AAGTCTGTCATCGAAGGGAACAATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCAAAGGGAACAATGGAGCAGACAAGAAGCCCAAGAAACTTGGTTCGAGCAAGGG
*
51353438 AAAAGCTGAAGAAAAGAGGGCAAAGAGGA
66 AAAAGCCGAAGAAAAGAGGGCAAAGAGGA
51353467 ACAAAAAGAA
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.40, C:0.16, G:0.33, T:0.11
Consensus pattern (96 bp):
AAGTCTGTCATCAAAGGGAACAATGGAGCAGACAAGAAGCCCAAGAAACTTGGTTCGAGCAAGGG
AAAAGCCGAAGAAAAGAGGGCAAAGAGGAGT
Found at i:51360449 original size:6 final size:6
Alignment explanation
Indices: 51360431--51360518 Score: 83
Period size: 6 Copynumber: 14.3 Consensus size: 6
51360421 AAGAAACATT
*
51360431 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* *
51360480 ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
51360519 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
5 6 0.09
6 52 0.76
7 6 0.09
8 4 0.06
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:51360452 original size:18 final size:18
Alignment explanation
Indices: 51360431--51360518 Score: 83
Period size: 19 Copynumber: 4.8 Consensus size: 18
51360421 AAGAAACATT
51360431 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
51360449 ATCAGAATCAGAATCAGGTA
1 ATCAGAATCAGAATCA-G-A
*
51360469 A-CAGAATCAAAATCAGA
1 ATCAGAATCAGAATCAGA
*
51360486 ATCAGTATCAGGTAAT-AGA
1 ATCAGAATCA-G-AATCAGA
*
51360505 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
51360519 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
17 5 0.08
18 23 0.39
19 26 0.44
20 5 0.08
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:51360475 original size:31 final size:31
Alignment explanation
Indices: 51360440--51360518 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
51360430 TATCAGAACT
*
51360440 AGAATCAGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
51360471 AGAATCAAAATCAGAATCAGTATCAGGTAAT
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
51360502 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
51360519 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:51360476 original size:25 final size:25
Alignment explanation
Indices: 51360445--51360515 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
51360435 GAACTAGAAT
51360445 CAGAATCAGAATCAGAATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
51360470 CAGAATCAAAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
51360494 CAGGTAAT-AGAATCAAAATCAG
1 CA-G-AATCAGAATCAGAATCAG
51360516 AATGTGAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
24 5 0.13
25 31 0.79
26 3 0.08
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:51360940 original size:27 final size:28
Alignment explanation
Indices: 51360878--51360940 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
51360868 CAGTCACTTG
51360878 CCCACAAGGGCAAAATAGTAATTTAACA
1 CCCACAAGGGCAAAATAGTAATTTAACA
* * * *
51360906 CCC-TAAGGGTAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAATAGTAATTTAACA
51360932 CCCACAAGG
1 CCCACAAGG
51360941 TATCTCGGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.21
Consensus pattern (28 bp):
CCCACAAGGGCAAAATAGTAATTTAACA
Found at i:51360978 original size:27 final size:27
Alignment explanation
Indices: 51360921--51361330 Score: 563
Period size: 27 Copynumber: 15.3 Consensus size: 27
51360911 AGGGTAAAAT
* * * *
51360921 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
51360947 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
51360974 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
51361001 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
51361028 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
51361055 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
51361082 GGTAATTCTACCATACTGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
51361109 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
51361136 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
51361163 GGTAATTCTACCCTACA-GGGTTTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
51361189 TGTAATTCTACCCTACTGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
51361216 AGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
51361243 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
51361270 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
51361297 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
51361324 GGTAATT
1 GGTAATT
51361331 ACACAAAGTA
Statistics
Matches: 342, Mismatches: 40, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
26 37 0.11
27 305 0.89
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:51361400 original size:27 final size:27
Alignment explanation
Indices: 51361342--51361508 Score: 82
Period size: 27 Copynumber: 6.2 Consensus size: 27
51361332 CACAAAGTAG
* ** * *
51361342 GGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTGTAAACCAA
51361369 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTGTAAACCAA
* ** ***
51361396 TGGTATTTCAGTAATTTTGTAAATTGA
1 GGGTATTTTGGTAATTTTGTAAACCAA
*** * * *
51361423 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAACCAA
*** ** *
51361450 GGGTAAAATGGTAATTTTGTAATTCGA
1 GGGTATTTTGGTAATTTTGTAAACCAA
*** * *
51361477 GGGTAAGATGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGTAAACCAA
51361504 GGGTA
1 GGGTA
51361509 AAATGGTAAT
Statistics
Matches: 117, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAACCAA
Found at i:51361435 original size:81 final size:81
Alignment explanation
Indices: 51361350--51361553 Score: 248
Period size: 81 Copynumber: 2.5 Consensus size: 81
51361340 AGGGGTATTT
* ** *** * **
51361350 TGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAATGGT-ATTTCAGTAATTTT
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAAGAT-AGTAATTTT
*
51361414 GTAAATTGAGGGTAAAA
65 GTAAATCGAGGGTAAAA
* ** * *
51361431 TGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAATTCGAGGGTAAGATGGTAATTTTG
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAAGATAGTAATTTTG
51361496 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
*
51361512 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAA
51361554 TTGAGCGTAA
Statistics
Matches: 104, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
81 102 0.98
82 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (81 bp):
TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAAGATAGTAATTTTG
TAAATCGAGGGTAAAA
Done.