Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 159 of 253
Found at i:51361509 original size:27 final size:27
Alignment explanation
Indices: 51361406--51361573 Score: 255
Period size: 27 Copynumber: 6.2 Consensus size: 27
51361396 TGGTATTTCA
*
51361406 GTAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
51361433 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
51361460 GTAATTTTGTAATTCGAGGGTAAGATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
51361487 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
51361514 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* * *
51361541 GTAATTTTATAAATTGAGCGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
51361568 GTAATT
1 GTAATT
51361574 CTATCTTACA
Statistics
Matches: 129, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 129 1.00
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAATG
Found at i:51361617 original size:27 final size:27
Alignment explanation
Indices: 51361587--51361736 Score: 174
Period size: 27 Copynumber: 5.6 Consensus size: 27
51361577 TCTTACAGGA
51361587 GTATTTTAGTAATTTTACAAATCGAGG
1 GTATTTTAGTAATTTTACAAATCGAGG
** * *
51361614 GTATTCCAGTAATTTTGCAAATTGAGG
1 GTATTTTAGTAATTTTACAAATCGAGG
*
51361641 GTATTTTGGTAATTTTACAAATCGAGG
1 GTATTTTAGTAATTTTACAAATCGAGG
* ** * *
51361668 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTTAGTAATTTTACAAATCGAGG
* * *
51361695 GTACTTTGGTAATTTTACAAGTCGAGG
1 GTATTTTAGTAATTTTACAAATCGAGG
*
51361722 GTATTTCAGTAATTT
1 GTATTTTAGTAATTT
51361737 GGTAAACTAA
Statistics
Matches: 101, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
GTATTTTAGTAATTTTACAAATCGAGG
Found at i:51361626 original size:54 final size:52
Alignment explanation
Indices: 51361568--51361736 Score: 151
Period size: 54 Copynumber: 3.1 Consensus size: 52
51361558 GCGTAAAATG
* * *
51361568 GTAATTCTATCTTACAGGAGTATTTTAGTAATTTTACAAATCGAGGGTATTCCA
1 GTAATTTTAT-TTACAGG-GTATTTTGGTAATTTTACAAATCGAGGGTATTTCA
* * * **
51361622 GTAATTTTGCAAATT-GAGGGTATTTTGGTAATTTTACAAATCGAGGATATTTGG
1 GTAATTTT---ATTTACAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCA
** * * *
51361676 GTAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTATTTA-C-AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCA
51361730 GTAATTT
1 GTAATTT
51361737 GGTAAACTAA
Statistics
Matches: 91, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
51 1 0.01
54 84 0.92
55 3 0.03
56 2 0.02
57 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (52 bp):
GTAATTTTATTTACAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCA
Found at i:51366848 original size:21 final size:21
Alignment explanation
Indices: 51366820--51366860 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
51366810 CAAAACTTGT
51366820 ATAACTATCATCAAA-CATTC
1 ATAACTATCATCAAATCATTC
51366840 ATAACCTATCATCAAATCATT
1 ATAA-CTATCATCAAATCATT
51366861 AATATACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (21 bp):
ATAACTATCATCAAATCATTC
Found at i:51370013 original size:45 final size:45
Alignment explanation
Indices: 51369962--51370048 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
51369952 CCAAAGCATG
*
51369962 TGTCACATATATCACGAACTCGGACCACAACTCAACGAGTTCGGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAACGAGTTCGGA
* * *
51370007 TGTCACATATATCATGAACTCAGACTACAACTCAATGAGTTC
1 TGTCACATATATCACGAACTCAGACCACAACTCAACGAGTTC
51370049 AGATTACATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAACGAGTTCGGA
Found at i:51371930 original size:40 final size:40
Alignment explanation
Indices: 51371886--51372109 Score: 269
Period size: 40 Copynumber: 5.6 Consensus size: 40
51371876 GCTATTCGTT
* * *
51371886 CAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
51371926 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
51371966 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
51372006 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
51372045 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
51372086 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
51372110 ACATCATTCG
Statistics
Matches: 160, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 114 0.71
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51372064 original size:119 final size:120
Alignment explanation
Indices: 51371888--51372110 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
51371878 TATTCGTTCA
* * *
51371888 AATGCCTTCGGGACATAGCCCAGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
51371953 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * *
51372008 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCAGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
51372070 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
51372111 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:51381958 original size:17 final size:18
Alignment explanation
Indices: 51381936--51381969 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51381926 CACATTGAAG
51381936 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
51381953 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
51381970 CTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:51383219 original size:27 final size:28
Alignment explanation
Indices: 51383183--51383275 Score: 91
Period size: 29 Copynumber: 3.3 Consensus size: 28
51383173 AAGTCTACAT
*
51383183 ACATGCATATGGCCCACTAAGCCC-ATC
1 ACATTCATATGGCCCACTAAGCCCAATC
* * * *
51383210 TCATTCATATGGCCTATTATGCCCAAATC
1 ACATTCATATGGCCCACTAAGCCC-AATC
**
51383239 ACATTCATATGGCCCA-TCGGCCCCAATC
1 ACATTCATATGGCCCACTAAG-CCCAATC
51383267 ACATTCATA
1 ACATTCATA
51383276 ATCATGCAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
27 19 0.35
28 15 0.28
29 20 0.37
ACGTcount: A:0.29, C:0.33, G:0.12, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAAGCCCAATC
Found at i:51383270 original size:28 final size:29
Alignment explanation
Indices: 51383183--51383275 Score: 93
Period size: 27 Copynumber: 3.3 Consensus size: 29
51383173 AAGTCTACAT
* * *
51383183 ACATGCATATGGCCCACTAAGCCC--ATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
51383210 TCATTCATATGGCCTATTATGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
51383239 ACATTCATATGGCCCA-TCGGCCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
51383267 ACATTCATA
1 ACATTCATA
51383276 ATCATGCAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 19 0.35
28 18 0.33
29 17 0.31
ACGTcount: A:0.29, C:0.33, G:0.12, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:51386948 original size:27 final size:27
Alignment explanation
Indices: 51386918--51386979 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
51386908 ATTTACTAAA
51386918 ATACCCCTACGTATG-AAAATTACCATT
1 ATACCCCTACG-ATGCAAAATTACCATT
** *
51386945 ATA-CCCTTTGGTGCAAAATTACCATT
1 ATACCCCTACGATGCAAAATTACCATT
51386971 ATACCCCTA
1 ATACCCCTA
51386980 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.69
27 7 0.24
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (27 bp):
ATACCCCTACGATGCAAAATTACCATT
Found at i:51387151 original size:27 final size:27
Alignment explanation
Indices: 51387085--51387163 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
51387075 GAGGAATCAT
*
51387085 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
**
51387113 TCTACTGGCTCTGCCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
51387140 TCTGGTGACTCTGTCACAATATCT
1 TCTGGTGGCTCTGCCACAATATCT
51387164 ATTCTGGCAG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 29 0.66
28 15 0.34
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:51390718 original size:27 final size:28
Alignment explanation
Indices: 51390675--51390759 Score: 120
Period size: 27 Copynumber: 3.1 Consensus size: 28
51390665 AAGGAAACGT
*
51390675 TCTGGTGGCTTTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
51390702 TCTGGTGGCTCTACCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
51390730 TCTGCTGGCTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
51390757 TCT
1 TCT
51390760 ATTCTGGCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 36 0.71
28 15 0.29
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:51392185 original size:272 final size:272
Alignment explanation
Indices: 51391699--51392243 Score: 1090
Period size: 272 Copynumber: 2.0 Consensus size: 272
51391689 CTCCTGTATG
51391699 ACTTTTTCACAAGTAGCATAAGGCAGCACCCCTGGATTCACAGCAGGGGGCCCTATTCTGACTGG
1 ACTTTTTCACAAGTAGCATAAGGCAGCACCCCTGGATTCACAGCAGGGGGCCCTATTCTGACTGG
51391764 CCCATGAACTCTAGCCCTAGCCCCAGGCCTCTGTCCGACACCAGGAGTCTCAGCCTCCCTTTTAT
66 CCCATGAACTCTAGCCCTAGCCCCAGGCCTCTGTCCGACACCAGGAGTCTCAGCCTCCCTTTTAT
51391829 TCTTACCCCATTCTTTTTCCTAATTCAGGTGCTCAGCGTGCTTCACATCCTCTACTATTTTTGCT
131 TCTTACCCCATTCTTTTTCCTAATTCAGGTGCTCAGCGTGCTTCACATCCTCTACTATTTTTGCT
51391894 TTCTCTACCAACTCTGAGAAAACTCACTCCCTTTGTGGAGCTATCAATACTCTGAGGCTATCCCT
196 TTCTCTACCAACTCTGAGAAAACTCACTCCCTTTGTGGAGCTATCAATACTCTGAGGCTATCCCT
51391959 AAGACCATCCTT
261 AAGACCATCCTT
51391971 ACTTTTTCACAAGTAGCATAAGGCAGCACCCCTGGATTCACAGCAGGGGGCCCTATTCTGACTGG
1 ACTTTTTCACAAGTAGCATAAGGCAGCACCCCTGGATTCACAGCAGGGGGCCCTATTCTGACTGG
51392036 CCCATGAACTCTAGCCCTAGCCCCAGGCCTCTGTCCGACACCAGGAGTCTCAGCCTCCCTTTTAT
66 CCCATGAACTCTAGCCCTAGCCCCAGGCCTCTGTCCGACACCAGGAGTCTCAGCCTCCCTTTTAT
51392101 TCTTACCCCATTCTTTTTCCTAATTCAGGTGCTCAGCGTGCTTCACATCCTCTACTATTTTTGCT
131 TCTTACCCCATTCTTTTTCCTAATTCAGGTGCTCAGCGTGCTTCACATCCTCTACTATTTTTGCT
51392166 TTCTCTACCAACTCTGAGAAAACTCACTCCCTTTGTGGAGCTATCAATACTCTGAGGCTATCCCT
196 TTCTCTACCAACTCTGAGAAAACTCACTCCCTTTGTGGAGCTATCAATACTCTGAGGCTATCCCT
51392231 AAGACCATCCTT
261 AAGACCATCCTT
51392243 A
1 A
51392244 AACCTAACGC
Statistics
Matches: 273, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
272 273 1.00
ACGTcount: A:0.21, C:0.33, G:0.16, T:0.30
Consensus pattern (272 bp):
ACTTTTTCACAAGTAGCATAAGGCAGCACCCCTGGATTCACAGCAGGGGGCCCTATTCTGACTGG
CCCATGAACTCTAGCCCTAGCCCCAGGCCTCTGTCCGACACCAGGAGTCTCAGCCTCCCTTTTAT
TCTTACCCCATTCTTTTTCCTAATTCAGGTGCTCAGCGTGCTTCACATCCTCTACTATTTTTGCT
TTCTCTACCAACTCTGAGAAAACTCACTCCCTTTGTGGAGCTATCAATACTCTGAGGCTATCCCT
AAGACCATCCTT
Found at i:51395941 original size:40 final size:40
Alignment explanation
Indices: 51395870--51396074 Score: 281
Period size: 40 Copynumber: 5.2 Consensus size: 40
51395860 AAACCAAGTA
* * *
51395870 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
51395909 CCTTTGGGACTAAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51395949 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51395989 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
51396029 CCTTCGGGACTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51396069 CCTTCG
1 CCTTCG
51396075 TTATCATCCG
Statistics
Matches: 149, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.08
40 137 0.92
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51402019 original size:29 final size:29
Alignment explanation
Indices: 51401958--51402019 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
51401948 GAACAGGCCG
* * **
51401958 TGTGCCTCACATGGCATTAGACAAGTCGG
1 TGTGCCTCACATGGAATTAGACAAGCCCA
*
51401987 TGTGCCTCACATGGAATTAGACACGCCCA
1 TGTGCCTCACATGGAATTAGACAAGCCCA
51402016 TGTG
1 TGTG
51402020 TCTAGCCCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (29 bp):
TGTGCCTCACATGGAATTAGACAAGCCCA
Found at i:51403342 original size:42 final size:42
Alignment explanation
Indices: 51403234--51403344 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 42
51403224 AGCTCGTAAA
* * * *
51403234 ATGCGAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCGAA-GTCCCAGACATGGTCTTAAACGAAATCAAATATCG
* * *
51403277 ATGCCACTA-TCCTAGACAGGGTCTTAAACGAAATCAAATA-CG
1 ATGCGA--AGTCCCAGACATGGTCTTAAACGAAATCAAATATCG
51403319 ATGTCGAAGTCCCAGACATGGTCTTA
1 ATG-CGAAGTCCCAGACATGGTCTTA
51403345 CACATAAATC
Statistics
Matches: 54, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.02
42 20 0.37
43 32 0.59
45 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (42 bp):
ATGCGAAGTCCCAGACATGGTCTTAAACGAAATCAAATATCG
Found at i:51406658 original size:28 final size:28
Alignment explanation
Indices: 51406618--51406728 Score: 127
Period size: 28 Copynumber: 4.0 Consensus size: 28
51406608 ACATACCTAT
*
51406618 ATATAGCCCATTAGGCCCAATCTC-TTC
1 ATATGGCCCATTAGGCCCAATCTCATTC
* *
51406645 AATATGGCCCATTAGGCCTAATCTCATTT
1 -ATATGGCCCATTAGGCCCAATCTCATTC
* *
51406674 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCC-AATCTCATTC
* *
51406703 ATACGG-CCATTAGGCCCAATCACATT
1 ATATGGCCCATTAGGCCCAATCTCATT
51406729 TACAATTATG
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
27 9 0.12
28 49 0.68
29 14 0.19
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCTCATTC
Found at i:51406689 original size:56 final size:56
Alignment explanation
Indices: 51406623--51406730 Score: 148
Period size: 56 Copynumber: 1.9 Consensus size: 56
51406613 CCTATATATA
* * * *
51406623 GCCCATTAGGCCC-AATCTC-TTCAATATGGCCCATTAGGCCTAATCTCATTTATGTG
1 GCCCATTAGGCCCAAATCACATTC-ATACGG-CCATTAGGCCCAATCACATTTATGTG
51406679 GCCCATTAGGCCCAAATCACATTCATACGGCCATTAGGCCCAATCACATTTA
1 GCCCATTAGGCCCAAATCACATTCATACGGCCATTAGGCCCAATCACATTTA
51406731 CAATTATGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
56 33 0.72
57 10 0.22
58 3 0.07
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.28
Consensus pattern (56 bp):
GCCCATTAGGCCCAAATCACATTCATACGGCCATTAGGCCCAATCACATTTATGTG
Found at i:51406965 original size:16 final size:16
Alignment explanation
Indices: 51406944--51406997 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
51406934 GTAGCCAAAC
* *
51406944 TTTCGGCTTTTCAGCA
1 TTTCGGCATTTCAGCT
51406960 TTTCGGCATTTC-GACT
1 TTTCGGCATTTCAG-CT
51406976 TTTCGGCATTTCAGCT
1 TTTCGGCATTTCAGCT
51406992 TTTCGG
1 TTTCGG
51406998 GATCTGTTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 1 0.03
16 32 0.94
17 1 0.03
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.44
Consensus pattern (16 bp):
TTTCGGCATTTCAGCT
Found at i:51406977 original size:24 final size:24
Alignment explanation
Indices: 51406944--51406996 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
51406934 GTAGCCAAAC
* *
51406944 TTTCGGCTTTTCAGCATTTCGGCA
1 TTTCGACTTTTCAGCATTTCAGCA
* *
51406968 TTTCGACTTTTCGGCATTTCAGCT
1 TTTCGACTTTTCAGCATTTCAGCA
51406992 TTTCG
1 TTTCG
51406997 GGATCTGTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.45
Consensus pattern (24 bp):
TTTCGACTTTTCAGCATTTCAGCA
Found at i:51410637 original size:40 final size:40
Alignment explanation
Indices: 51410553--51410776 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
51410543 TTGAATGATG
* * * *
51410553 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51410593 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51410633 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51410672 TCCGGGTTAAGTCCCG-AGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51410711 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51410752 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51410777 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 72 0.44
40 81 0.50
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51410744 original size:79 final size:80
Alignment explanation
Indices: 51410553--51410776 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
51410543 TTGAATGATG
* * * * *
51410553 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
51410616 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
51410633 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCG-AGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
51410696 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
51410711 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
51410775 TG
65 TG
51410777 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 32 0.25
79 66 0.52
80 28 0.22
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:51410798 original size:79 final size:79
Alignment explanation
Indices: 51410553--51410809 Score: 222
Period size: 79 Copynumber: 3.3 Consensus size: 79
51410543 TTGAATGATG
* * * * * * *
51410553 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCG-AGGCAT
** *
51410616 TTGTGCGAGAT-ACTAAT
63 TTGAACGAG-TGACTAAA
* *
51410633 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAGGCATTTG
** *
51410697 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
51410711 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCG-AGGCATT
*
51410775 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
51410791 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51410810 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 31 0.20
79 81 0.53
80 39 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAGGCATTTG
AACGAGTGACTAAA
Found at i:51418602 original size:40 final size:39
Alignment explanation
Indices: 51418518--51418741 Score: 283
Period size: 40 Copynumber: 5.7 Consensus size: 39
51418508 TTGAATGATG
* * *
51418518 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
51418558 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
51418597 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
51418636 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
51418676 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
51418716 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51418742 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 10 0.06
39 50 0.30
40 96 0.59
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:51418763 original size:79 final size:79
Alignment explanation
Indices: 51418518--51418774 Score: 229
Period size: 79 Copynumber: 3.3 Consensus size: 79
51418508 TTGAATGATG
* * * * * * *
51418518 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTA-AACCGGGCTAAG-TCCCGAAGGCAT
** *
51418581 TTGTGCGAGAT-ACTAAT
63 TTGAACGAG-TGACTAAA
* * *
51418598 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCATTTG
** *
51418662 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
51418676 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AACCGGGCTAAGTCCCGAAGGCATTT
*
51418741 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
* *
51418756 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51418775 TACGTGATTT
Statistics
Matches: 153, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
77 2 0.01
78 44 0.29
79 55 0.36
80 52 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:51423528 original size:46 final size:46
Alignment explanation
Indices: 51423475--51423612 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
51423465 TATATATACA
* * * *
51423475 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
** * *
51423521 CATCTCATACAGGTTTCGCATTAGCCATTCGGCTTTACCTCATATT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
51423567 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGG-CTTTACCACATAT
51423613 ATACATGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 68 0.85
47 12 0.15
ACGTcount: A:0.25, C:0.30, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:51423668 original size:47 final size:47
Alignment explanation
Indices: 51423585--51424062 Score: 668
Period size: 47 Copynumber: 10.1 Consensus size: 47
51423575 ACACATTTCG
* * * **
51423585 CATTAGCCATTCGGCCTTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCC-TTATCACACATACGCATGTTCACATTCATCA
* * *
51423633 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
51423680 CATTGACCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
51423727 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
51423774 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
51423821 CATTGGCCATTCGGCCTTATCGCACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
51423868 CATTGGCCATTCGGCCTTATCACACATACGCCTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
51423915 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
51423962 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
** * * ** **
51424013 CATTTTCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
51424060 CAT
1 CAT
51424063 AAAATCCTAA
Statistics
Matches: 402, Mismatches: 24, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
47 347 0.86
48 15 0.04
49 2 0.00
51 38 0.09
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:51428398 original size:27 final size:27
Alignment explanation
Indices: 51428367--51428543 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51428357 TAAATTGTAC
*
51428367 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* ** *
51428394 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
51428420 ATGCACTAAGTGTGCGA-TTGACCATGC
1 A-GCACTAAGTGTGCGAGTTGACTATGT
*
51428447 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
51428474 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
51428502 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
51428529 AGCACTGAGTTTGCG
1 AGCACTAAGTGTGCG
51428544 GACTTAATAT
Statistics
Matches: 130, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
26 21 0.16
27 83 0.64
28 26 0.20
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:51428517 original size:55 final size:54
Alignment explanation
Indices: 51428367--51428543 Score: 214
Period size: 53 Copynumber: 3.3 Consensus size: 54
51428357 TAAATTGTAC
* **
51428367 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
* ** *
51428420 ATGCACTAAGTGTGCGA-TTGACCATGCGGCACTAAGTGTGCGAGTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
* * *
51428474 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
* *
51428529 AGCACTGAGTTTGCG
1 AGCACTAAGTGTGCG
51428544 GACTTAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 46 0.43
54 16 0.15
55 44 0.42
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:51433068 original size:41 final size:43
Alignment explanation
Indices: 51432975--51433099 Score: 150
Period size: 42 Copynumber: 2.9 Consensus size: 43
51432965 CAATGCCAAC
* *
51432975 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCATT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCATT
51433018 GTCCCAGACA-GGTCTTACACGAAATCAAATAT-GATGCCGA-T
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCC-ATT
* * *
51433059 GTCCTAGACATGGTCGTACACGTAAATCTCAA-ATCGATGCC
1 GTCCCAGACATGGTCTTACACG-AAATC-AAATATCGATGCC
51433100 CTATGCCATG
Statistics
Matches: 72, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
41 16 0.22
42 31 0.43
43 17 0.24
44 8 0.11
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCATT
Found at i:51434471 original size:45 final size:45
Alignment explanation
Indices: 51434406--51434496 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
51434396 CCAAAACATG
*
51434406 TGTCACATATATCACAAACTCAAACCACAACTTAATGAGTTCAGA
1 TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGA
** *
51434451 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGA
51434496 T
1 T
51434497 TACATAATTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACAAACTCAAACCACAACTCAATGAGTTCAGA
Found at i:51435984 original size:30 final size:30
Alignment explanation
Indices: 51435948--51436007 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
51435938 AGGGCCTATG
*
51435948 AGTTTTAGGGGTATTTTAAGAATTTTAACT
1 AGTTTTAGGAGTATTTTAAGAATTTTAACT
*
51435978 AGTTTTAGGAGTATTTTAGGAATTTTAACT
1 AGTTTTAGGAGTATTTTAAGAATTTTAACT
51436008 CTAGAGTGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (30 bp):
AGTTTTAGGAGTATTTTAAGAATTTTAACT
Found at i:51436162 original size:30 final size:30
Alignment explanation
Indices: 51436126--51436185 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
51436116 CATTCCCAAG
51436126 TTTGTTTTCACGATAGGTTTTCTCTAAACA
1 TTTGTTTTCACGATAGGTTTTCTCTAAACA
51436156 TTTGTTTTCACGATAGGTTTTCTCTAAACA
1 TTTGTTTTCACGATAGGTTTTCTCTAAACA
51436186 CCAAACTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (30 bp):
TTTGTTTTCACGATAGGTTTTCTCTAAACA
Found at i:51439256 original size:40 final size:40
Alignment explanation
Indices: 51439174--51439469 Score: 384
Period size: 40 Copynumber: 7.5 Consensus size: 40
51439164 AAGCCAAGTA
* * * *
51439174 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
51439212 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51439252 CCTTCGGGACTTAGCCCAGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
51439292 CCTTCGGGACTTAGCTCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51439332 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51439372 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
51439412 CCTTCAGGACTTAGCCCGGA-ACCAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51439452 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
51439470 TTTATCATTC
Statistics
Matches: 231, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
38 12 0.05
39 17 0.07
40 202 0.87
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51440281 original size:21 final size:21
Alignment explanation
Indices: 51440256--51440304 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
51440246 CTTCACCTTA
51440256 CTACCATTTCACATCTACTTT
1 CTACCATTTCACATCTACTTT
51440277 CTACCATTTCACATCTACTTT
1 CTACCATTTCACATCTACTTT
51440298 CTACCAT
1 CTACCAT
51440305 GGCCGAATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (21 bp):
CTACCATTTCACATCTACTTT
Found at i:51443019 original size:48 final size:48
Alignment explanation
Indices: 51442948--51443045 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
51442938 TGTTATGAGC
51442948 ATAACATGAAGTCACATGAATGTATATTAAGCCATTACTCTTGGTCTA
1 ATAACATGAAGTCACATGAATGTATATTAAGCCATTACTCTTGGTCTA
*
51442996 ATAACATGAAGTCACATGAATGTATATTAAGTCATTACTCTTGGTCTA
1 ATAACATGAAGTCACATGAATGTATATTAAGCCATTACTCTTGGTCTA
51443044 AT
1 AT
51443046 CCAGTCAAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (48 bp):
ATAACATGAAGTCACATGAATGTATATTAAGCCATTACTCTTGGTCTA
Found at i:51446868 original size:164 final size:164
Alignment explanation
Indices: 51446597--51446924 Score: 647
Period size: 164 Copynumber: 2.0 Consensus size: 164
51446587 CGAATCGGGA
51446597 AAAGAATTTGTGGTTTACAGTGATGTGTCCTTGAATGGACTGGGTTGCGTGCTTATTTAAGAGGG
1 AAAGAATTTGTGGTTTACAGTGATGTGTCCTTGAATGGACTGGGTTGCGTGCTTATTTAAGAGGG
51446662 CAAAGTAATAGCATATGCTTCGAGGCAACTGAAGCCACACGAGGAAAATTATCCAACACACGAAT
66 CAAAGTAATAGCATATGCTTCGAGGCAACTGAAGCCACACGAGGAAAATTATCCAACACACGAAT
51446727 TGGAGCTAGCTGCCATTGTTTTTGCCTTAAAGAT
131 TGGAGCTAGCTGCCATTGTTTTTGCCTTAAAGAT
51446761 AAAGAATTTGTGGTTTACAGTGATGTGTCCTTGAATGGACTGGGTTGCGTGCTTATTTAAGAGGG
1 AAAGAATTTGTGGTTTACAGTGATGTGTCCTTGAATGGACTGGGTTGCGTGCTTATTTAAGAGGG
51446826 CAAAGTAATAGCATATGCTTCGAGGCAACTGAAGCCACACGAGGAAAATTATCCAACACACGAAT
66 CAAAGTAATAGCATATGCTTCGAGGCAACTGAAGCCACACGAGGAAAATTATCCAACACACGAAT
*
51446891 TGGAGCTAGCTGCCATTGTTTTTGGCTTAAAGAT
131 TGGAGCTAGCTGCCATTGTTTTTGCCTTAAAGAT
51446925 TTGGAAACAC
Statistics
Matches: 163, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
164 163 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (164 bp):
AAAGAATTTGTGGTTTACAGTGATGTGTCCTTGAATGGACTGGGTTGCGTGCTTATTTAAGAGGG
CAAAGTAATAGCATATGCTTCGAGGCAACTGAAGCCACACGAGGAAAATTATCCAACACACGAAT
TGGAGCTAGCTGCCATTGTTTTTGCCTTAAAGAT
Found at i:51449571 original size:49 final size:49
Alignment explanation
Indices: 51449498--51449692 Score: 257
Period size: 49 Copynumber: 3.9 Consensus size: 49
51449488 TAGCCGAAGC
* *
51449498 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
51449547 AATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * *
51449598 TTTC-GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTG-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
51449647 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTAAACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
51449693 TCACAATAGT
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
49 82 0.65
50 4 0.03
51 40 0.32
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:51449617 original size:100 final size:100
Alignment explanation
Indices: 51449504--51449690 Score: 329
Period size: 100 Copynumber: 1.9 Consensus size: 100
51449494 AAGCTATCTG
* *
51449504 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATAATCTGGTACACATAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCT
*
51449569 GCACTTAGTACTACACACGTGATCACAGTTTTCGA
66 GCACTTAGTACTAAACACGTGATCACAGTTTTCGA
* *
51449604 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCT
51449669 GCACTTAGTACTAAACACGTGA
66 GCACTTAGTACTAAACACGTGA
51449691 CCTCACAATA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCCT
GCACTTAGTACTAAACACGTGATCACAGTTTTCGA
Found at i:51451228 original size:39 final size:39
Alignment explanation
Indices: 51451184--51451372 Score: 227
Period size: 39 Copynumber: 5.1 Consensus size: 39
51451174 AATTATGTTA
* *
51451184 CCAGCACAAAGCCTGCGGGACTTTAGCTTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
*
51451223 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
*
51451262 CCAGCACGAAGCCTGCGGG----T---CT---TTCATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
** *
51451291 CCAGCACGAAGCCTATGGGTCTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
* *
51451330 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
51451369 CCAG
1 CCAG
51451373 TGTCTTGCTT
Statistics
Matches: 129, Mismatches: 11, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
29 23 0.18
32 1 0.01
33 1 0.01
35 1 0.01
36 2 0.02
39 101 0.78
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
Found at i:51451299 original size:29 final size:29
Alignment explanation
Indices: 51451257--51451314 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
51451247 AGCCCGGATA
*
51451257 CATTTCCAGCACGAAGCCTGCGGGTCTTT
1 CATTTCCAGCACGAAGCCTACGGGTCTTT
*
51451286 CATTTCCAGCACGAAGCCTATGGGTCTTT
1 CATTTCCAGCACGAAGCCTACGGGTCTTT
51451315 AGCCTGGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.29
Consensus pattern (29 bp):
CATTTCCAGCACGAAGCCTACGGGTCTTT
Found at i:51451327 original size:68 final size:68
Alignment explanation
Indices: 51451218--51451353 Score: 236
Period size: 68 Copynumber: 2.0 Consensus size: 68
51451208 AGCTTGGATA
*
51451218 CATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTC
1 CATTTCCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTC
51451283 TTT
66 TTT
* * *
51451286 CATTTCCAGCACGAAGCCTATGGGTCTTTAGCCTGGATACATTTCCAGCACGAAGCCTGCGGGTC
1 CATTTCCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTC
51451351 TTT
66 TTT
51451354 AGCCCGGATA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (68 bp):
CATTTCCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTC
TTT
Found at i:51456397 original size:39 final size:39
Alignment explanation
Indices: 51456353--51456512 Score: 268
Period size: 39 Copynumber: 4.1 Consensus size: 39
51456343 AATTATATTA
*
51456353 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCTCGGATACATTT
51456392 CCAGCACGAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCTCGGATACATTT
*
51456431 CCAGCACGAAGCCTGCGGGTCTTTAGC-CTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCTC-GGATACATTT
* *
51456470 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCTCGGATACATTT
51456509 CCAG
1 CCAG
51456513 TATCTTGCTT
Statistics
Matches: 117, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
38 1 0.01
39 115 0.98
40 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCTCGGATACATTT
Found at i:51458029 original size:14 final size:16
Alignment explanation
Indices: 51457997--51458035 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
51457987 ATTTACATAA
*
51457997 CATATATCACATATTT
1 CATATATCACATATGT
51458013 CATATATCAC-T-TGT
1 CATATATCACATATGT
51458027 CATATATCA
1 CATATATCA
51458036 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:51462640 original size:49 final size:49
Alignment explanation
Indices: 51462584--51462682 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
51462574 AATTGGGACA
*
51462584 ATACAATTCTGTTTGATCGGTTTTAAATTGAATTGAAATTTTATAGCCC
1 ATACAATTCTATTTGATCGGTTTTAAATTGAATTGAAATTTTATAGCCC
51462633 ATACAATTCTATTTGATCGGTTTTAAATTGAATTGAAATTTTATAGCCC
1 ATACAATTCTATTTGATCGGTTTTAAATTGAATTGAAATTTTATAGCCC
51462682 A
1 A
51462683 AACTTTTTGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.42
Consensus pattern (49 bp):
ATACAATTCTATTTGATCGGTTTTAAATTGAATTGAAATTTTATAGCCC
Found at i:51468589 original size:12 final size:12
Alignment explanation
Indices: 51468559--51468591 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
51468549 TATATATTTT
51468559 AAAATT-ATATA
1 AAAATTAATATA
51468570 AAAA-TAATATA
1 AAAATTAATATA
51468581 AAAATTAATAT
1 AAAATTAATAT
51468592 GGACGGGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:51489701 original size:6 final size:6
Alignment explanation
Indices: 51489686--51489739 Score: 63
Period size: 6 Copynumber: 9.0 Consensus size: 6
51489676 ATTAAGTCTA
* * * * *
51489686 TTTATC TTTATG TTTATT TTTATT TTTATT TTTATC TTTCTC TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
51489734 TTTATT
1 TTTATT
51489740 GTTCTTATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:51489713 original size:18 final size:18
Alignment explanation
Indices: 51489686--51489739 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
51489676 ATTAAGTCTA
*
51489686 TTTATCTTTATGTTTATT
1 TTTATCTTTATTTTTATT
* *
51489704 TTTATTTTTATTTTTATC
1 TTTATCTTTATTTTTATT
*
51489722 TTTCTCTTTATTTTTATT
1 TTTATCTTTATTTTTATT
51489740 GTTCTTATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (18 bp):
TTTATCTTTATTTTTATT
Found at i:51489792 original size:16 final size:16
Alignment explanation
Indices: 51489771--51489802 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51489761 TTTGTAACGC
51489771 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
51489787 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
51489803 TCTCGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
CCCAAAAATCCTGAAA
Found at i:51490922 original size:16 final size:16
Alignment explanation
Indices: 51490879--51490928 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
51490869 TGAATCGGCA
*
51490879 AAAT-CCGAAATGCCG
1 AAATGCCGAAAAGCCG
*
51490894 AAATG-CGAAAAAGTCG
1 AAATGCCG-AAAAGCCG
*
51490910 AAATGCCGAAAAGCTG
1 AAATGCCGAAAAGCCG
51490926 AAA
1 AAA
51490929 GTTTGACTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
15 6 0.21
16 20 0.71
17 2 0.07
ACGTcount: A:0.48, C:0.18, G:0.22, T:0.12
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:51491237 original size:28 final size:29
Alignment explanation
Indices: 51491150--51491241 Score: 134
Period size: 29 Copynumber: 3.2 Consensus size: 29
51491140 TATGAATAAC
51491150 GGGCCATATAAATGTGATTTGGGCCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
*
51491179 GGGTCATATATAA-GTGATTTGGGCCTAAT
1 GGGCCATATA-AATGTGATTTGGGCCTAAT
* *
51491208 GGGCCATATAAATATGA-TTGGGCTTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
51491236 GGGCCA
1 GGGCCA
51491242 GATACAGGTA
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
28 18 0.32
29 37 0.65
30 2 0.04
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGGGCCTAAT
Found at i:51495239 original size:16 final size:16
Alignment explanation
Indices: 51495212--51495254 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
51495202 ATGAATCGGC
*
51495212 AAAAGCCAAAATGCCG
1 AAAAGCCGAAATGCCG
* *
51495228 AAAAGTCGAAATGTCG
1 AAAAGCCGAAATGCCG
51495244 AAAAGCCGAAA
1 AAAAGCCGAAA
51495255 GTTTTGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.51, C:0.19, G:0.21, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:51495518 original size:29 final size:28
Alignment explanation
Indices: 51495463--51495575 Score: 136
Period size: 29 Copynumber: 4.0 Consensus size: 28
51495453 GTGAGCATGA
* * *
51495463 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
51495491 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
51495520 ATATATAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
51495549 ATATGAATATGATTGGGCTTAATGGGC
1 ATATAAATGTGATTGGGCCTAATGGGC
51495576 TAGATATAGG
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 25 0.34
29 49 0.66
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:51495548 original size:58 final size:57
Alignment explanation
Indices: 51495476--51495586 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
51495466 TGAATGTGAC
* *
51495476 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATATAGGTGATT
* * * *
51495534 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCTAGATATAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATATAGGT
51495587 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.30
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATATAGGTGATT
Found at i:51496148 original size:21 final size:20
Alignment explanation
Indices: 51496115--51496153 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51496105 TATCCCCACA
51496115 TGGTGTGACGAGGGATGGAGC
1 TGGTGTGACGA-GGATGGAGC
51496136 TGGTGTGTA-GAGGATGGA
1 TGGTGTG-ACGAGGATGGA
51496154 TAATTTGGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 7 0.41
21 9 0.53
22 1 0.06
ACGTcount: A:0.21, C:0.05, G:0.51, T:0.23
Consensus pattern (20 bp):
TGGTGTGACGAGGATGGAGC
Found at i:51498578 original size:30 final size:30
Alignment explanation
Indices: 51498542--51498599 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
51498532 AGACCATTTT
*
51498542 CCACACGGGCTGAG-CACACGCCCTTGTGAC
1 CCACACGGGCT-AGCCACACGCCCATGTGAC
51498572 CCACACGGGCTAGCCACACGCCCATGTG
1 CCACACGGGCTAGCCACACGCCCATGTG
51498600 GTAGCCCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.21, C:0.41, G:0.26, T:0.12
Consensus pattern (30 bp):
CCACACGGGCTAGCCACACGCCCATGTGAC
Found at i:51501451 original size:84 final size:84
Alignment explanation
Indices: 51501296--51501494 Score: 192
Period size: 84 Copynumber: 2.4 Consensus size: 84
51501286 ATTTGTTTCA
* * * * ** *
51501296 GGATTTATTCCCACCATTTAACAAGATTTTTTTCGATTTTTTTTTGTTTTCAAATTATAATTAAA
1 GGATTTATTCCCACCATTTAACAAGATTTTATTCGATATTGTTTTGTTTCCAAAGAAAAATTAAA
*
51501361 TTAAATAAAATCTATTTTG
66 TCAAATAAAATCTATTTTG
* * * *
51501380 GGATTTATTCTCGCCGTTTTACAAGATTTTATTCGATATTGTTTTGTTTCCAAAGAAAAACTT-A
1 GGATTTATTCCCACCATTTAACAAGATTTTATTCGATATTGTTTTGTTTCCAAAGAAAAA-TTAA
*
51501444 ATCAAAT--AAT-TATGTTTCA
65 ATCAAATAAAATCTAT-TTT-G
* **
51501463 GAATTTATTTTCACCATTTAAC-AGATTTTATT
1 GGATTTATTCCCACCATTTAACAAGATTTTATT
51501495 TTCATTTAAT
Statistics
Matches: 94, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
81 3 0.03
82 16 0.17
83 17 0.18
84 56 0.60
85 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.09, T:0.47
Consensus pattern (84 bp):
GGATTTATTCCCACCATTTAACAAGATTTTATTCGATATTGTTTTGTTTCCAAAGAAAAATTAAA
TCAAATAAAATCTATTTTG
Found at i:51504463 original size:24 final size:25
Alignment explanation
Indices: 51504436--51504495 Score: 113
Period size: 24 Copynumber: 2.4 Consensus size: 25
51504426 AGCCCTCTCG
51504436 AGCATCCTGATGTATAGTTCTTGC-
1 AGCATCCTGATGTATAGTTCTTGCA
51504460 AGCATCCTGATGTATAGTTCTTGCA
1 AGCATCCTGATGTATAGTTCTTGCA
51504485 AGCATCCTGAT
1 AGCATCCTGAT
51504496 CAGGTAGTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 24 0.69
25 11 0.31
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (25 bp):
AGCATCCTGATGTATAGTTCTTGCA
Found at i:51516077 original size:21 final size:21
Alignment explanation
Indices: 51516053--51516104 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
51516043 CATTGTTTCT
*
51516053 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
51516074 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
51516095 AATCTCACCG
1 AATCTCACCG
51516105 TCACCGCTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.38, G:0.10, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:51517708 original size:21 final size:21
Alignment explanation
Indices: 51517682--51517727 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
51517672 GAGTTCTTTT
51517682 TGCAATCAAAAGCTAAAATTA
1 TGCAATCAAAAGCTAAAATTA
51517703 TGCAATCAAAAGCTAAAATTA
1 TGCAATCAAAAGCTAAAATTA
51517724 TGCA
1 TGCA
51517728 TGGAGTAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.50, C:0.15, G:0.11, T:0.24
Consensus pattern (21 bp):
TGCAATCAAAAGCTAAAATTA
Found at i:51533015 original size:27 final size:27
Alignment explanation
Indices: 51532983--51533036 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
51532973 ATATTTGAGA
*
51532983 AAGGGTTATTAAGCTTATTTGGCGTAT
1 AAGGGTTATGAAGCTTATTTGGCGTAT
51533010 AAGGGTTATGAAGCTTATTTGGCGTAT
1 AAGGGTTATGAAGCTTATTTGGCGTAT
51533037 GAGTTGAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.07, G:0.28, T:0.39
Consensus pattern (27 bp):
AAGGGTTATGAAGCTTATTTGGCGTAT
Found at i:51545159 original size:24 final size:24
Alignment explanation
Indices: 51545132--51545201 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 24
51545122 GTGAGAAAAA
51545132 ATTTTAAAGTTTGGCAAAAAGGGC
1 ATTTTAAAGTTTGGCAAAAAGGGC
51545156 ATTTT--A--TTGAG-AAAAA----
1 ATTTTAAAGTTTG-GCAAAAAGGGC
51545172 ATTTTAAAGTTTGGCAAAAAGGGC
1 ATTTTAAAGTTTGGCAAAAAGGGC
51545196 ATTTTA
1 ATTTTA
51545202 GTTATTTGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 20
0.64 0.00 0.36
Matches are distributed among these distances:
16 5 0.14
18 1 0.03
19 1 0.03
20 16 0.44
21 1 0.03
22 1 0.03
24 11 0.31
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (24 bp):
ATTTTAAAGTTTGGCAAAAAGGGC
Found at i:51545167 original size:40 final size:40
Alignment explanation
Indices: 51545123--51545201 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
51545113 ATGGACATGG
51545123 TGAGAAAAAATTTTAAAGTTTGGCAAAAAGGGCATTTTAT
1 TGAGAAAAAATTTTAAAGTTTGGCAAAAAGGGCATTTTAT
51545163 TGAGAAAAAATTTTAAAGTTTGGCAAAAAGGGCATTTTA
1 TGAGAAAAAATTTTAAAGTTTGGCAAAAAGGGCATTTTA
51545202 GTTATTTGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (40 bp):
TGAGAAAAAATTTTAAAGTTTGGCAAAAAGGGCATTTTAT
Found at i:51548336 original size:17 final size:17
Alignment explanation
Indices: 51548311--51548347 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
51548301 TGAAAATTTC
51548311 TTTCAAAAATTTTGACA
1 TTTCAAAAATTTTGACA
*
51548328 TTTCGAAAATTTTGACA
1 TTTCAAAAATTTTGACA
51548345 TTT
1 TTT
51548348 GGGTACTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (17 bp):
TTTCAAAAATTTTGACA
Found at i:51549405 original size:27 final size:27
Alignment explanation
Indices: 51549364--51549418 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
51549354 TGTCATGTGA
* *
51549364 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
51549391 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
51549418 A
1 A
51549419 GTTGTATGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:51549784 original size:51 final size:51
Alignment explanation
Indices: 51549666--51549904 Score: 281
Period size: 51 Copynumber: 4.7 Consensus size: 51
51549656 TATTGTGAGG
* * * *
51549666 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGAATAA-TT-GG
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACTCG-ATAACTTCGA
* *
51549715 TCTCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACTCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACTCGATAACTTCGA
51549766 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACTCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACTCGATAACTTCGA
* * * * ** * *
51549817 TCATGTGTGTAGTACTAAGTGTAAGCTACTACGTGTA-TCAGAT-GGTTAGG
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACTC-GATAACTTCGA
* *
51549867 TCATGTGTGTAGTACTAAGTGTAGGCTACTATACGTAC
1 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTAC
51549905 CAGATAGCCT
Statistics
Matches: 165, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
49 37 0.22
50 42 0.25
51 86 0.52
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACTCGATAACTTCGA
Found at i:51553008 original size:27 final size:27
Alignment explanation
Indices: 51552971--51553175 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
51552961 TAAATTGTAC
51552971 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
51552998 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51553025 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51553051 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51553079 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51553107 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
51553134 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
51553161 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51553176 GACTCAATAT
Statistics
Matches: 155, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51561048 original size:27 final size:27
Alignment explanation
Indices: 51561011--51561217 Score: 238
Period size: 27 Copynumber: 7.6 Consensus size: 27
51561001 TAAATTGTAC
51561011 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
51561038 AGCACTAAGTGTGTGCGATTTGACTATGT
1 AGCACTAA--GTGTGCGATTTGACTATGT
* ** *
51561067 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51561093 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51561121 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51561149 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
51561176 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
51561203 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51561218 GACTCAATAT
Statistics
Matches: 155, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 105 0.68
28 23 0.15
29 26 0.17
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51561182 original size:82 final size:81
Alignment explanation
Indices: 51561011--51561196 Score: 239
Period size: 82 Copynumber: 2.3 Consensus size: 81
51561001 TAAATTGTAC
* * * *
51561011 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGTGCGATTTGACTATGTTGCACTAAG
1 AGCACTAAGTGTGCGAATTGACCATGCAGCACTAAG-GTGTGCGATTTGACTATGTAGCACTAAG
*
51561076 TGTGCGAAATGAATATG
65 TGTGCGAAATGAATACG
*
51561093 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAA-GTGTGCGAGTTTGACTATGTAGCACTAA
1 A-GCACTAAGTGTGCGAATTGACCATGCAGCACTAAGGTGTGCGA-TTTGACTATGTAGCACTAA
** *
51561157 GTGTGCGATTTGATTACG
64 GTGTGCGAAATGAATACG
*
51561175 TAGCACTAAGTGTGCGAGTTGA
1 -AGCACTAAGTGTGCGAATTGA
51561197 TGATATAGCA
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
81 8 0.09
82 52 0.57
83 31 0.34
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
AGCACTAAGTGTGCGAATTGACCATGCAGCACTAAGGTGTGCGATTTGACTATGTAGCACTAAGT
GTGCGAAATGAATACG
Found at i:51561208 original size:82 final size:79
Alignment explanation
Indices: 51561011--51561217 Score: 234
Period size: 82 Copynumber: 2.5 Consensus size: 79
51561001 TAAATTGTAC
* *
51561011 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGTGCGATTTGACTATGTTGCACTAAG
1 AGCACTAAGTGTGCGAATTGA-TATGTAGCACTAA--GTGTGCGATTTGACTATGTAGCACTAAG
*
51561076 TGTGCGAAATGAATATG
63 TGTGCGAAATGAATACG
* **
51561093 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 A-GCACTAAGTGTGCGAATTGA-TATGTAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAG
** *
51561158 TGTGCGATTTGATTACG
63 TGTGCGAAATGAATACG
* * *
51561175 TAGCACTAAGTGTGCGAGTTGATGATATAGCACTGAGTGTGCG
1 -AGCACTAAGTGTGCGAATTGAT-ATGTAGCACTAAGTGTGCG
51561218 GACTCAATAT
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
81 8 0.08
82 67 0.63
83 31 0.29
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (79 bp):
AGCACTAAGTGTGCGAATTGATATGTAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGT
GCGAAATGAATACG
Found at i:51568125 original size:42 final size:42
Alignment explanation
Indices: 51568062--51568179 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
51568052 TAGGGTTAGT
51568062 TGAGATTACGTGTAAGACCATATCTGGGATATGACATCAATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGACATCAATA
* * * * *
51568104 TGAGATTTCGTGTAAGGCCATAGCT-GGACTATTGCCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGA-TA-TGACATCAATA
** *
51568147 TGAGATCCCATGTAAGACCATATCTGGGATATG
1 TGAGATTACGTGTAAGACCATATCTGGGATATG
51568180 GCATTGGTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
41 3 0.05
42 26 0.41
43 31 0.49
44 3 0.05
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGACATCAATA
Found at i:51569884 original size:20 final size:20
Alignment explanation
Indices: 51569859--51569900 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
51569849 GCCGATAAAA
51569859 GAAAGTTTATTGAGAAAAGT
1 GAAAGTTTATTGAGAAAAGT
51569879 GAAAGTTTATTGAGAAAAGT
1 GAAAGTTTATTGAGAAAAGT
51569899 GA
1 GA
51569901 TTTTGTGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.26, T:0.29
Consensus pattern (20 bp):
GAAAGTTTATTGAGAAAAGT
Found at i:51574261 original size:21 final size:20
Alignment explanation
Indices: 51574227--51574265 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
51574217 GAGTATTTTG
*
51574227 ATGTTTAATGATAGATTATGA
1 ATGTTTAATAATAG-TTATGA
*
51574248 ATGTTTGATAATAGTTAT
1 ATGTTTAATAATAGTTAT
51574266 ACAAGTTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (20 bp):
ATGTTTAATAATAGTTATGA
Found at i:51578391 original size:13 final size:13
Alignment explanation
Indices: 51578373--51578397 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51578363 AAGCTATGTG
51578373 AGGGACACGAGCC
1 AGGGACACGAGCC
51578386 AGGGACACGAGC
1 AGGGACACGAGC
51578398 GTGTGCTCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.40, T:0.00
Consensus pattern (13 bp):
AGGGACACGAGCC
Found at i:51579507 original size:20 final size:20
Alignment explanation
Indices: 51579478--51579516 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51579468 TGATTGGTTG
* *
51579478 TGATTGAATTGTATTTGAAT
1 TGATTAAATTGTATGTGAAT
51579498 TGATTAAATTGTATGTGAA
1 TGATTAAATTGTATGTGAA
51579517 ATATATGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
TGATTAAATTGTATGTGAAT
Found at i:51584537 original size:47 final size:47
Alignment explanation
Indices: 51584484--51584577 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
51584474 TGGCCATAAC
*
51584484 AGAGTACGAGCGAGAATTTGTCAGACTGAGCAAATACGTTCAAGAGT
1 AGAGTACGAGCGAGAATTTGTCAGACTAAGCAAATACGTTCAAGAGT
51584531 AGAGTACGAGCGAGAATTTGTCAGACTAAGCAAATACGTTCAAGAGT
1 AGAGTACGAGCGAGAATTTGTCAGACTAAGCAAATACGTTCAAGAGT
51584578 GTGTTTCCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (47 bp):
AGAGTACGAGCGAGAATTTGTCAGACTAAGCAAATACGTTCAAGAGT
Found at i:51589703 original size:46 final size:46
Alignment explanation
Indices: 51589653--51589828 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
51589643 TGATTGAGCA
51589653 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
51589699 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51589744 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51589792 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51589829 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51589809 original size:93 final size:93
Alignment explanation
Indices: 51589650--51589821 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
51589640 GGATGATTGA
*
51589650 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
51589715 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
51589743 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
51589807 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
51589822 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51594130 original size:90 final size:90
Alignment explanation
Indices: 51593977--51594154 Score: 245
Period size: 90 Copynumber: 2.0 Consensus size: 90
51593967 AGTAAGATGC
* * * *
51593977 CAACGCCATATCCCAGATATGGTCTTACATGGGAATACAAGTCGATGCCAATGCCATGTCCCAGA
1 CAACGCCATATCCCAGATATGGTCTTACATGAGAACACAAGCCGATGCCAATGCCATATCCCAGA
*
51594042 CATGGTCTTATATGGGATCTCATAT
66 CATGGTCTTATACGGGATCTCATAT
*
51594067 CAACGCCATATCCTC-GATATGGTCTTACATGATAACACATA-CCGATG-CAGATGCCATATCCC
1 CAACGCCATATCC-CAGATATGGTCTTACATGAGAACACA-AGCCGATGCCA-ATGCCATATCCC
*
51594129 AGATATGGTCTTATACGGGATCTCAT
63 AGACATGGTCTTATACGGGATCTCAT
51594155 CACCCCAAAT
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
89 2 0.03
90 74 0.95
91 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (90 bp):
CAACGCCATATCCCAGATATGGTCTTACATGAGAACACAAGCCGATGCCAATGCCATATCCCAGA
CATGGTCTTATACGGGATCTCATAT
Found at i:51602973 original size:48 final size:48
Alignment explanation
Indices: 51602917--51603015 Score: 189
Period size: 48 Copynumber: 2.1 Consensus size: 48
51602907 GACCATTAGC
*
51602917 CTACCGGTTGGTGTTGCCATCCGAATTGGAAAAGATTCACGATGTATT
1 CTACCGGTTGGCGTTGCCATCCGAATTGGAAAAGATTCACGATGTATT
51602965 CTACCGGTTGGCGTTGCCATCCGAATTGGAAAAGATTCACGATGTATT
1 CTACCGGTTGGCGTTGCCATCCGAATTGGAAAAGATTCACGATGTATT
51603013 CTA
1 CTA
51603016 TGTATCCATG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (48 bp):
CTACCGGTTGGCGTTGCCATCCGAATTGGAAAAGATTCACGATGTATT
Found at i:51612844 original size:27 final size:27
Alignment explanation
Indices: 51612813--51612990 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51612803 TAAATTGTAC
51612813 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51612840 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51612866 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51612894 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51612922 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51612949 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51612976 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51612991 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51612927 original size:82 final size:81
Alignment explanation
Indices: 51612814--51612969 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51612804 AAATTGTACA
* *
51612814 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
51612878 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51612895 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
51612960 TGCGAGTTGA
65 TGCGAATTGA
51612970 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51612981 original size:82 final size:81
Alignment explanation
Indices: 51612810--51612990 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
51612800 GATTAAATTG
* *
51612810 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
51612875 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
51612891 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
51612955 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
51612973 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
51612991 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51620477 original size:26 final size:26
Alignment explanation
Indices: 51620447--51620587 Score: 91
Period size: 25 Copynumber: 5.6 Consensus size: 26
51620437 AATTGTCCAC
*
51620447 AAGTGTGCGATTTGACTATGTGCACT
1 AAGTGTGCGAGTTGACTATGTGCACT
* * *
51620473 AAGTGTGCGA--TGAAT-TGATTCCCT
1 AAGTGTGCGAGTTGACTATG-TGCACT
* * * *
51620497 AAGTGTGCGAATTG-CCATGCGGACT
1 AAGTGTGCGAGTTGACTATGTGCACT
51620522 AAGTGTGCGAGTTGACT-T-TAGCACT
1 AAGTGTGCGAGTTGACTATGT-GCACT
* * *
51620547 -AGTGGTGCGATTTGATTACGTAGCA-T
1 AAGT-GTGCGAGTTGACTATGT-GCACT
51620573 AAGTGTGCGAGTTGA
1 AAGTGTGCGAGTTGA
51620588 TTATTAGCAC
Statistics
Matches: 88, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
23 2 0.02
24 21 0.24
25 31 0.35
26 26 0.30
27 8 0.09
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (26 bp):
AAGTGTGCGAGTTGACTATGTGCACT
Found at i:51620603 original size:25 final size:25
Alignment explanation
Indices: 51620523--51620604 Score: 87
Period size: 25 Copynumber: 3.2 Consensus size: 25
51620513 ATGCGGACTA
*
51620523 AGTGTGCGAGTTGACT-TTAGCACT
1 AGTGTGCGAGTTGATTATTAGCACT
* *
51620547 AGTGGTGCGATTTGATTACGTAGCA-T
1 AGT-GTGCGAGTTGATTA-TTAGCACT
51620573 AAGTGTGCGAGTTGATTATTAGCACT
1 -AGTGTGCGAGTTGATTATTAGCACT
*
51620599 GGTGTG
1 AGTGTG
51620605 TGGACTCATT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
24 3 0.06
25 21 0.45
26 15 0.32
27 8 0.17
ACGTcount: A:0.22, C:0.12, G:0.32, T:0.34
Consensus pattern (25 bp):
AGTGTGCGAGTTGATTATTAGCACT
Found at i:51626628 original size:93 final size:93
Alignment explanation
Indices: 51626513--51626684 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
51626503 TGCCCATAAG
* *
51626513 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAATTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
51626577 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
51626606 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51626671 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51626685 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:51626679 original size:46 final size:46
Alignment explanation
Indices: 51626506--51626681 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
51626496 TGTAACCTGC
* *
51626506 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
** *
51626552 CCATAATTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
51626602 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51626645 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51626682 TGCTCAATCA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51627958 original size:50 final size:50
Alignment explanation
Indices: 51627883--51627981 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
51627873 CCACAACCTT
51627883 ATACTACTACTGAACCACTTTAGAAATTTTATTTTCTTCTTCTCTTCTTA
1 ATACTACTACTGAACCACTTTAGAAATTTTATTTTCTTCTTCTCTTCTTA
*
51627933 ATACTACTACTGAACCACTTTAGAAATTTTCTTTTCTTCTTCTCTTCTT
1 ATACTACTACTGAACCACTTTAGAAATTTTATTTTCTTCTTCTCTTCTT
51627982 CTTTTTCTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.24, C:0.23, G:0.04, T:0.48
Consensus pattern (50 bp):
ATACTACTACTGAACCACTTTAGAAATTTTATTTTCTTCTTCTCTTCTTA
Found at i:51628643 original size:28 final size:30
Alignment explanation
Indices: 51628588--51628652 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 30
51628578 AATTTAGAAT
* *
51628588 TTAG-TTTTTATATTTTTATTTTTAAAAAA
1 TTAGATTTTTATATTTTCATATTTAAAAAA
* *
51628617 TTA-ATTTTT-TATTTTCATATTTCAAAAT
1 TTAGATTTTTATATTTTCATATTTAAAAAA
51628645 TTAGATTT
1 TTAGATTT
51628653 AATTATTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (30 bp):
TTAGATTTTTATATTTTCATATTTAAAAAA
Found at i:51629643 original size:18 final size:18
Alignment explanation
Indices: 51629616--51629666 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 18
51629606 TTGAGTATTC
51629616 ATATATTTTTATAAATTTTA
1 ATATA-TTTT-TAAATTTTA
*
51629636 ATA-ATTTTT-AATTTTT
1 ATATATTTTTAAATTTTA
51629652 ATATATTTTTAAATT
1 ATATATTTTTAAATT
51629667 CAAATTCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
16 9 0.32
17 7 0.25
18 8 0.29
19 1 0.04
20 3 0.11
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATATATTTTTAAATTTTA
Found at i:51636571 original size:30 final size:30
Alignment explanation
Indices: 51636537--51636593 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
51636527 TTTTCAGGCA
* *
51636537 TAGGGGTAAAATGGTTATTTTGCCAAATTC
1 TAGGGGCAAAATGGTCATTTTGCCAAATTC
51636567 TAGGGGCAAAATGGTCATTTTGCCAAA
1 TAGGGGCAAAATGGTCATTTTGCCAAA
51636594 GATGTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTGCCAAATTC
Found at i:51636996 original size:47 final size:45
Alignment explanation
Indices: 51636925--51637193 Score: 231
Period size: 47 Copynumber: 5.8 Consensus size: 45
51636915 TGATTGGTGT
* * * *
51636925 GCCAGCGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGA
* * *
51636971 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAGATGAGA
*
51637019 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAGATGAGA
* * * * *
51637066 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATG-AGA
* * *
51637110 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACGTGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC----AGATGAGA
*
51637158 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
51637194 AATATATCCC
Statistics
Matches: 179, Mismatches: 29, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
43 5 0.03
44 30 0.17
46 18 0.10
47 62 0.35
48 41 0.23
49 17 0.09
50 6 0.03
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGA
Found at i:51637137 original size:91 final size:94
Alignment explanation
Indices: 51636921--51637190 Score: 295
Period size: 94 Copynumber: 2.9 Consensus size: 94
51636911 TGGGTGATTG
* * * *
51636921 GTGTGCCAGCGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCA
1 GTGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCA
*
51636986 TGTCTGGGACATGGCATCAGCACAGAGAT
66 TGTCTGGGACATCGCATCAGCACAGAGAT
* *
51637015 GAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACA-GA-GATAGCCAGTGTAAGA
1 GTGTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACATGATGAGAGCCAGTGTAAGA
* *
51637078 -CGTGTCTGGGACA-CGCATCGGCTA-AGAG-T
63 CCATGTCTGGGACATCGCATCAGC-ACAGAGAT
* * *
51637107 -TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACGTGTATATGAGAGCCAGTGTAAGA
1 GTGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATG---ATGAGAGCCAGTGTAAGA
* *
51637170 CCATGTTTGGGACATGGCATC
63 CCATGTCTGGGACATCGCATC
51637191 GGCAATATAT
Statistics
Matches: 148, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
87 2 0.01
88 2 0.01
91 34 0.23
92 16 0.11
93 22 0.15
94 51 0.34
95 16 0.11
96 2 0.01
97 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (94 bp):
GTGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCA
TGTCTGGGACATCGCATCAGCACAGAGAT
Found at i:51645533 original size:22 final size:22
Alignment explanation
Indices: 51645505--51645547 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
51645495 GACTATACGA
51645505 TCTGAGCTCATGAGT-TATGTGG
1 TCTGAGCTCATGA-TATATGTGG
51645527 TCTGAGCTCATGATATATGTG
1 TCTGAGCTCATGATATATGTG
51645548 ACACATGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.37
Consensus pattern (22 bp):
TCTGAGCTCATGATATATGTGG
Found at i:51653653 original size:49 final size:48
Alignment explanation
Indices: 51653581--51653764 Score: 208
Period size: 49 Copynumber: 3.7 Consensus size: 48
51653571 TGAGGTCACG
51653581 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AATAATTGGTCGCA
* ** * * * *
51653630 TGTGTAGTACTACA-TGCAGGCTACTATGCATACCCAAAAACTGTGATCACG
1 TGTGTAGTACTA-AGTGCAGGCTACTACGTGTA-CCAATAA-T-TGGTCGCA
*
51653681 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-ATAATTGGTCGCA
* * *
51653730 TGTGTAGTACTAGGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
51653765 GATAGCTTCG
Statistics
Matches: 111, Mismatches: 18, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
49 68 0.61
50 9 0.08
51 34 0.31
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAATAATTGGTCGCA
Found at i:51653749 original size:100 final size:100
Alignment explanation
Indices: 51653576--51653763 Score: 324
Period size: 100 Copynumber: 1.9 Consensus size: 100
51653566 TATTGTGAGG
51653576 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
51653641 ACATGCAGGCTACTATGCATACCCAAAAACTGTGA
66 ACATGCAGGCTACTATGCATACCCAAAAACTGTGA
*
51653676 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-ATATTATTGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGA-ATAATTGGTCGCATGTGTAGTAC
** *
51653740 TAGGTGCAGGCTACTATGCGTACC
65 TACATGCAGGCTACTATGCATACC
51653764 AGATAGCTTC
Statistics
Matches: 83, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
99 1 0.01
100 82 0.99
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
ACATGCAGGCTACTATGCATACCCAAAAACTGTGA
Found at i:51682335 original size:40 final size:40
Alignment explanation
Indices: 51682254--51682471 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
51682244 CAACCAAGTA
* * *
51682254 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
51682293 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51682333 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51682373 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51682413 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
51682453 CCTTCGGCACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51682472 TTATCATCCG
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.10
40 152 0.90
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51685636 original size:45 final size:44
Alignment explanation
Indices: 51685566--51685741 Score: 212
Period size: 45 Copynumber: 4.0 Consensus size: 44
51685556 TATCGCACAG
* *
51685566 TACTATTGGGGCCTTTGAGACTAGCAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAG-CTAGCAGGCTATAATGCCGGTGAGA
* *
51685611 TACTATTTGGGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGC-TAGCAGGCTATAATGCCGGTGAGA
* * *
51685656 TACCACTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAG-CTAGCAGGCTATAATGCCGGTGAGA
** *
51685701 TACTATTCGGG-CTTCAAGCCTAGCAGGCGA-AATGCCGGTGA
1 TACTATTCGGGCCTTTGAG-CTAGCAGGCTATAATGCCGGTGA
51685742 ATGAATTCGG
Statistics
Matches: 115, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
43 11 0.10
44 16 0.14
45 87 0.76
46 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (44 bp):
TACTATTCGGGCCTTTGAGCTAGCAGGCTATAATGCCGGTGAGA
Found at i:51697508 original size:13 final size:13
Alignment explanation
Indices: 51697490--51697514 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51697480 CTATTTAGTG
51697490 TCACAAAATCCAT
1 TCACAAAATCCAT
51697503 TCACAAAATCCA
1 TCACAAAATCCA
51697515 CACTCTAGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (13 bp):
TCACAAAATCCAT
Found at i:51699818 original size:40 final size:40
Alignment explanation
Indices: 51699773--51700036 Score: 363
Period size: 40 Copynumber: 6.6 Consensus size: 40
51699763 GCCACTAGCT
* *
51699773 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
51699813 AAAATGCCTTCGGGACTTAGCCCGGTA-TAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
51699852 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
51699892 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
51699932 CAAATGCCTTCGGGACTTAGCTCGGAATTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* ** * *
51699972 CAAATGCCTTTGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
51700012 CAAATG-CTCTCGGGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
51700037 TTATCATCCG
Statistics
Matches: 204, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.18
40 167 0.82
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:51700027 original size:120 final size:119
Alignment explanation
Indices: 51699761--51700036 Score: 387
Period size: 119 Copynumber: 2.3 Consensus size: 119
51699751 TAGCCGGATA
* *
51699761 TAGCCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCAAAAATGCCTTCGG
1 TAGCCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAAAAATGCCTTCGG
*
51699826 GACTTAGCCCGGTATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
66 GACTTAGCCCGGAATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
* * * * *
51699880 TAG-TAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAGCTCGCACAAATGCCTTC
1 TAGCCA-CTAGCTCAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCAAAAATGCCTTC
* * * *
51699943 GGGACTTAGCTCGGAATTAGTAGCTCGCACAAATGCCTTTGGGACTTAGCCCGGAAT
64 GGGACTTAGCCCGGAA-TAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
51700000 TAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCGG
1 TAGCCACTAGCTCAAATGCCT-TCGGGACTTAGCCCGG
51700037 TTATCATCCG
Statistics
Matches: 137, Mismatches: 15, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
118 2 0.01
119 68 0.50
120 66 0.48
121 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (119 bp):
TAGCCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAAAAATGCCTTCGG
GACTTAGCCCGGAATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT
Found at i:51708654 original size:34 final size:34
Alignment explanation
Indices: 51708611--51708677 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
51708601 TCTTTAACTT
*
51708611 GCAACTGGTAGTATCCGAATCTCAAATCTATCTC
1 GCAACTGGTAGTATCCAAATCTCAAATCTATCTC
51708645 GCAACTGGTAGTATCCAAATCTCAAATCTATCT
1 GCAACTGGTAGTATCCAAATCTCAAATCTATCT
51708678 TTAAAAACAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (34 bp):
GCAACTGGTAGTATCCAAATCTCAAATCTATCTC
Found at i:51711681 original size:40 final size:40
Alignment explanation
Indices: 51711635--51711859 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
51711625 CTTGGACAAG
* *
51711635 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
51711675 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
51711715 GCCTTCGGGTCTTAGCTCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
51711755 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * * *
51711795 GCCTTCGGATCGTAGTCCAGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
51711836 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
51711860 CATTCGAATA
Statistics
Matches: 156, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.82
41 27 0.17
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:51720050 original size:79 final size:81
Alignment explanation
Indices: 51719914--51720098 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
51719904 TTGAATGATG
*
51719914 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51719978 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
51719993 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
51720055 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
51720073 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51720099 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:51720112 original size:40 final size:40
Alignment explanation
Indices: 51719915--51720098 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
51719905 TGAATGATGT
* * * *
51719915 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
51719955 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
51719995 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51720033 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51720074 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51720099 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:51720120 original size:79 final size:79
Alignment explanation
Indices: 51719967--51720131 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
51719957 GGACTAAGAT
* **
51719967 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
51720032 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
51720046 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
51720109 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51720125 CCGAAGG
1 CCGAAGG
51720132 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51727989 original size:79 final size:81
Alignment explanation
Indices: 51727853--51728037 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
51727843 TTGAATGATG
*
51727853 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51727917 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
51727932 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
51727994 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
51728012 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51728038 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:51728051 original size:40 final size:40
Alignment explanation
Indices: 51727854--51728037 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
51727844 TGAATGATGT
* * * *
51727854 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
51727894 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
51727934 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51727972 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51728013 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51728038 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:51728059 original size:79 final size:79
Alignment explanation
Indices: 51727906--51728070 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
51727896 GGACTAAGAT
* **
51727906 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
51727971 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
51727985 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
51728048 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51728064 CCGAAGG
1 CCGAAGG
51728071 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51734696 original size:7 final size:7
Alignment explanation
Indices: 51734684--51734708 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51734674 CCTCATTCCT
51734684 TCATTCA
1 TCATTCA
51734691 TCATTCA
1 TCATTCA
51734698 TCATTCA
1 TCATTCA
51734705 TCAT
1 TCAT
51734709 CCCTTATCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (7 bp):
TCATTCA
Found at i:51737372 original size:79 final size:81
Alignment explanation
Indices: 51737263--51737445 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
51737253 TACTCGTTCA
* *
51737263 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
51737326 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
51737343 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
51737406 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
51737422 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
51737446 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:51737445 original size:40 final size:40
Alignment explanation
Indices: 51737242--51737445 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
51737232 CGGAATTTAA
** *
51737242 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51737282 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51737322 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51737361 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51737401 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51737441 CCGGA
1 CCGGA
51737446 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51738725 original size:85 final size:85
Alignment explanation
Indices: 51738596--51738774 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
51738586 TATTTTATTG
51738596 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
51738661 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
51738681 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
51738746 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
51738766 CCCATGCTC
1 CCCATGCTC
51738775 ATGGCCGGCC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:51745286 original size:40 final size:40
Alignment explanation
Indices: 51745249--51745431 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
51745239 GCTACTCGTT
*
51745249 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
51745289 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* **
51745329 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
51745368 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAC-CA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-T-CGCA
51745409 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
51745432 CACATCATTC
Statistics
Matches: 122, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
38 3 0.02
39 29 0.24
40 74 0.61
41 15 0.12
42 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51745417 original size:79 final size:80
Alignment explanation
Indices: 51745249--51745431 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 80
51745239 GCTACTCGTT
* **
51745249 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGAAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
51745313 GATTTAGTAACTCGCAC
64 GATATAGTAACTCGCAC
* **
51745330 CAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
51745393 ATATGGTCACTTAC-CA-
65 ATATAGTAAC-T-CGCAC
51745409 CAAAGCCTTCGGGACTTAGCCCG
1 CAAAGCCTTCGGGACTTAGCCCG
51745432 CACATCATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 3 0.03
79 58 0.67
80 22 0.25
81 4 0.05
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTCGCAC
Found at i:51746714 original size:85 final size:84
Alignment explanation
Indices: 51746601--51746778 Score: 347
Period size: 85 Copynumber: 2.1 Consensus size: 84
51746591 TATTTTATTG
51746601 CCCATGCTCTTTATTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
1 CCCATGCTCTTTATTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
51746666 AGCCATAACATCTTGTCCA
66 AGCCATAACATCTTGTCCA
51746685 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTA-TTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
51746750 TAGCCATAACATCTTGTCCA
65 TAGCCATAACATCTTGTCCA
51746770 CCCATGCTC
1 CCCATGCTC
51746779 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
84 13 0.14
85 80 0.86
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (84 bp):
CCCATGCTCTTTATTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
AGCCATAACATCTTGTCCA
Found at i:51747807 original size:144 final size:149
Alignment explanation
Indices: 51747618--51747912 Score: 451
Period size: 144 Copynumber: 2.0 Consensus size: 149
51747608 CGACACTATA
51747618 AGAAAATGGAAAGGAGAGGGAGTAAGGATAAAGCTTAATAGGTTGCATGC-AAT-AATATAACAA
1 AGAAAATGGAAAGGAGAGGGAGTAAGGATAAAGCTTAATAGGTTGCATGCAAATAAATATAACAA
* * * * *
51747681 -AACTTTACGATTCGTCATCAT-TGTCAT-GTACCAAAGTAGGCATAAAGC-CAAC-TAATTAGG
66 CAACTTTACCATTCATCATCATGT-TCATAATACAAAAGTAGGCAT-AAGCACAACTTAATTAGC
*
51747741 ACTGTCTAATACACTTCATAT
129 ACTGTCTAATACAATTCATAT
51747762 AGAAAATGGAAAGGAGAGGGAGTAAGGATAAAGCTTAATAGGTTGCATGCAAATAAATATAACAA
1 AGAAAATGGAAAGGAGAGGGAGTAAGGATAAAGCTTAATAGGTTGCATGCAAATAAATATAACAA
* *
51747827 CAACTTTACCATTCATCATCATGTTCATAATACAAAAGTAGGCATAAGCACAACTTACTTATCAC
66 CAACTTTACCATTCATCATCATGTTCATAATACAAAAGTAGGCATAAGCACAACTTAATTAGCAC
51747892 TGTCTAATACAATTCATAT
131 TGTCTAATACAATTCATAT
51747911 AG
1 AG
51747913 CATATATTGA
Statistics
Matches: 136, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
144 50 0.37
145 3 0.02
146 10 0.07
147 27 0.20
148 19 0.14
149 27 0.20
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.26
Consensus pattern (149 bp):
AGAAAATGGAAAGGAGAGGGAGTAAGGATAAAGCTTAATAGGTTGCATGCAAATAAATATAACAA
CAACTTTACCATTCATCATCATGTTCATAATACAAAAGTAGGCATAAGCACAACTTAATTAGCAC
TGTCTAATACAATTCATAT
Found at i:51748141 original size:47 final size:48
Alignment explanation
Indices: 51748072--51748388 Score: 266
Period size: 47 Copynumber: 6.7 Consensus size: 48
51748062 ATATAATGCT
* *
51748072 GATGCCATGTCCCGAACATGGTCTTACACTGGCTCATCTATCAAGT-C
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCTATCAAGTCC
51748119 GATGCCATGTCCCAAACATGGTCTTACACT-GACTCATCTATCAAGT-C
1 GATGCCATGTCCCAAACATGGTCTTACACTAG-CTCATCTATCAAGTCC
* * **
51748166 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATACCCGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCATC-TAT-CAAGT-CC
* * * * * *
51748216 GATGCCATGTTCCAGACATGGTCTTACACTAACACCTCTAT-ACGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCTATCAAGT-CC
* * * * *
51748264 GATG-CATATCCCAGACAT-GTCTTACACTGGCTTACATC--TCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGC-T-CATCTATCAAGTCC
*
51748310 GATG-CATGT-CCAAGACAT-GTCTTACACTAGCTC-TCATCTCAA-TCCC
1 GATGCCATGTCCCAA-ACATGGTCTTACACTAGCTCATC-TATCAAGT-CC
* *
51748356 GATTCCATGTACCAAACATGGTCTTACACTAGC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGC
51748389 ACACAAATGA
Statistics
Matches: 227, Mismatches: 25, Indels: 35
0.79 0.09 0.12
Matches are distributed among these distances:
43 2 0.01
44 1 0.00
45 4 0.02
46 49 0.22
47 100 0.44
48 34 0.15
50 35 0.15
51 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCTATCAAGTCC
Found at i:51748348 original size:46 final size:47
Alignment explanation
Indices: 51748165--51748388 Score: 185
Period size: 46 Copynumber: 4.7 Consensus size: 47
51748155 TCTATCAAGT
* *
51748165 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATACCCGTGC
1 CGATG-CATGTCCAAGACATGGTCTTACACTAGCTCT-ACAT-CTCGTGC
* * *
51748215 CGATGCCATGTTCC-AGACATGGTCTTACACTAACACCT-CTAT-ACGTGC
1 CGATG-CATG-TCCAAGACATGGTCTTACACTAGC-TCTAC-ATCTCGTGC
* * * *
51748263 CGATGCATATCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGC
1 CGATGCATGTCCAAGACATGGTCTTACACTAGCTCTACATCTCG-TGC
* *
51748309 CGATGCATGTCCAAGACAT-GTCTTACACTAGCTCT-CATCTCAATCC
1 CGATGCATGTCCAAGACATGGTCTTACACTAGCTCTACATCTC-GTGC
*
51748355 CGATTCCATGTACCAA-ACATGGTCTTACACTAGC
1 CGA-TGCATGT-CCAAGACATGGTCTTACACTAGC
51748389 ACACAAATGA
Statistics
Matches: 146, Mismatches: 16, Indels: 26
0.78 0.09 0.14
Matches are distributed among these distances:
44 3 0.02
45 3 0.02
46 56 0.38
47 20 0.14
48 27 0.18
49 1 0.01
50 31 0.21
51 5 0.03
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (47 bp):
CGATGCATGTCCAAGACATGGTCTTACACTAGCTCTACATCTCGTGC
Done.