Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 160 of 253
Found at i:51750334 original size:680 final size:681
Alignment explanation
Indices: 51749033--51750399 Score: 2619
Period size: 680 Copynumber: 2.0 Consensus size: 681
51749023 ACTTTCAACC
51749033 ATTTTACAAGATAGTCATCTCATTTGAAAACTCATGCAACAAGAGTTCTAAAAATACAAAAATCA
1 ATTTTACAAGATAGTCATCTCATTTGAAAACTCATGCAACAAGAGTTCTAAAAATACAAAAATCA
*
51749098 TCAAGAAATACCATCAAAATCACTTACTTGAGAGGGTTACAAGTTGCTGAAATTTTCAAGCTTTC
66 ACAAGAAATACCATCAAAATCACTTACTTGAGAGGGTTACAAGTTGCTGAAATTTTCAAGCTTTC
*
51749163 AAACCCAAACAATGGTTGAATTTTTAGTGGAGAAGAAATGGTGAAAAGGGATGATATCATCTTTC
131 AAACCCAAACAATGGCTGAATTTTTAGTGGAGAAGAAATGGTGAAAAGGGATGATATCATCTTTC
*
51749228 TTTTATTATATCTCTATTTTGGTCAAATAAGCAACCAAAACCCACATAATTTGACTTTTTAATCA
196 TTTTATTATATCTCTATTTTGGTCAAATAAGCAACCAAAACCCACATAATTTGACTTTTTAACCA
51749293 TTCTTGTCCCCATGGCTAGCCAAGCATTCTCTTTAGGGTCTATTTTCCCTTTAAAGACCCCCAAT
261 TTCTTGTCCCCATGGCTAGCCAAGCATTCTCTTTAGGGTCTATTTTCCCTTTAAAGACCCCCAAT
*
51749358 TTTGGTGCTCTAGCTATTTGACACCCTTAACAATCAAAATAGGACTTTTACACTTTATGCGATTT
326 TTTGGTGCTCTAGCTATGTGACACCCTTAACAATCAAAATAGGACTTTTACACTTTATGCGATTT
*
51749423 AGTCCTTTTTCGCGATTAAGCTCTCGAATGCTTGAATTAATTCACCAAATCTTTCATGCACCTTT
391 AGTCCTTTTTCGCGATTAAGCTCTCGAATGCTTAAATTAATTCACCAAATCTTTCATGCACCTTT
51749488 ATAATCATGTCATCACACATAAAATAATATTAAAAACACTTTATCCCCAACTTGAAACTCGATCT
456 ATAATCATGTCATCACACATAAAATAATATTAAAAACACTTTATCCCCAACTTGAAACTCGATCT
**
51749553 CTTTCTATTTTAAATCCATGTAGGATTTTTGTCTATCCGAGTGGCCTTTATACATTCGCGAATCA
521 CTTTCTATTTTAAATCCATGTAGGATTTTTGTCTATCCGAACGGCCTTTATACATTCGCGAATCA
51749618 CTTTAATTTTTTCTTCAGTCTCTCTGTGTAATAGCCCGATTTAGGGCCTAGTCAGAATAGTGGTC
586 CTTTAATTTTTTCTTCAGTCTCTCTGTGTAATAGCCCGATTTAGGGCCTAGTCAGAATAGTGGTC
51749683 CTGGGACCACAAATTTGAAGTTAGAGAGATT
651 CTGGGACCACAAATTTGAAGTTAGAGAGATT
51749714 ATTTTACAAGATAGTCATCTCATTTGAAAACTCATGCAACAAGAGTTCTAAAAATACAAAAATCA
1 ATTTTACAAGATAGTCATCTCATTTGAAAACTCATGCAACAAGAGTTCTAAAAATACAAAAATCA
51749779 ACAAGAAATACCATCAAAATCACTTACTTGAGAGGGTTACAAGTTGCTGAAATTTTCAAGCTTTC
66 ACAAGAAATACCATCAAAATCACTTACTTGAGAGGGTTACAAGTTGCTGAAATTTTCAAGCTTTC
* *
51749844 AAACCCAAATAATGGCTGAATTTTTAGTGGAGAAGAAATGGTGAAAATGGATGATATCATCTTTC
131 AAACCCAAACAATGGCTGAATTTTTAGTGGAGAAGAAATGGTGAAAAGGGATGATATCATCTTTC
51749909 TTTTATTATATCTCTATTTTGGTCAAATAAGCAACCAAAACCCACATAATTTGACTTTTTAACCA
196 TTTTATTATATCTCTATTTTGGTCAAATAAGCAACCAAAACCCACATAATTTGACTTTTTAACCA
51749974 TTCTTG-CCCCATGGCTAGCCAAGCATTCTCTTTAGGGTCTATTTTCCCTTTAAAGACCCCCAAT
261 TTCTTGTCCCCATGGCTAGCCAAGCATTCTCTTTAGGGTCTATTTTCCCTTTAAAGACCCCCAAT
51750038 TTTGGTGCTCTAGCTATGTGACACCCTTAACAATCAAAATAGGACTTTTACACTTTATGCGATTT
326 TTTGGTGCTCTAGCTATGTGACACCCTTAACAATCAAAATAGGACTTTTACACTTTATGCGATTT
*
51750103 AGTCTTTTTTCGCGATTAAGCTCTCGAATGCTTAAATTAATTCACCAAATCTTTCATGCACCTTT
391 AGTCCTTTTTCGCGATTAAGCTCTCGAATGCTTAAATTAATTCACCAAATCTTTCATGCACCTTT
51750168 ATAATCATGTCATCACACATAAAATAATATTAAAAACACTTTATCCCCAACTTGAAACTCGATCT
456 ATAATCATGTCATCACACATAAAATAATATTAAAAACACTTTATCCCCAACTTGAAACTCGATCT
51750233 CTTTCTATTTTAAATCCATGTAGGATTTTTGTCTATCCGAACGGCCTTTATACATTCGCGAATCA
521 CTTTCTATTTTAAATCCATGTAGGATTTTTGTCTATCCGAACGGCCTTTATACATTCGCGAATCA
51750298 CTTTAATTTTTTCTTCAGTCTCTCTGTGTAATAGCCCGATTTAGGGCCTAGTCAGAATAGTGGTC
586 CTTTAATTTTTTCTTCAGTCTCTCTGTGTAATAGCCCGATTTAGGGCCTAGTCAGAATAGTGGTC
* *
51750363 CTGGGACCACAAATTTGAAGTTAGATATATT
651 CTGGGACCACAAATTTGAAGTTAGAGAGATT
51750394 ATTTTA
1 ATTTTA
51750400 TTATTATTTT
Statistics
Matches: 674, Mismatches: 12, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
680 413 0.61
681 261 0.39
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.35
Consensus pattern (681 bp):
ATTTTACAAGATAGTCATCTCATTTGAAAACTCATGCAACAAGAGTTCTAAAAATACAAAAATCA
ACAAGAAATACCATCAAAATCACTTACTTGAGAGGGTTACAAGTTGCTGAAATTTTCAAGCTTTC
AAACCCAAACAATGGCTGAATTTTTAGTGGAGAAGAAATGGTGAAAAGGGATGATATCATCTTTC
TTTTATTATATCTCTATTTTGGTCAAATAAGCAACCAAAACCCACATAATTTGACTTTTTAACCA
TTCTTGTCCCCATGGCTAGCCAAGCATTCTCTTTAGGGTCTATTTTCCCTTTAAAGACCCCCAAT
TTTGGTGCTCTAGCTATGTGACACCCTTAACAATCAAAATAGGACTTTTACACTTTATGCGATTT
AGTCCTTTTTCGCGATTAAGCTCTCGAATGCTTAAATTAATTCACCAAATCTTTCATGCACCTTT
ATAATCATGTCATCACACATAAAATAATATTAAAAACACTTTATCCCCAACTTGAAACTCGATCT
CTTTCTATTTTAAATCCATGTAGGATTTTTGTCTATCCGAACGGCCTTTATACATTCGCGAATCA
CTTTAATTTTTTCTTCAGTCTCTCTGTGTAATAGCCCGATTTAGGGCCTAGTCAGAATAGTGGTC
CTGGGACCACAAATTTGAAGTTAGAGAGATT
Found at i:51751177 original size:30 final size:30
Alignment explanation
Indices: 51751143--51751200 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
51751133 TTTTCGAGCA
* *
51751143 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
51751173 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
51751201 ATGTGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:51751736 original size:46 final size:46
Alignment explanation
Indices: 51751544--51751806 Score: 151
Period size: 47 Copynumber: 5.6 Consensus size: 46
51751534 TGCGTAAGCA
* * ** * *
51751544 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGCC
* ** ** *
51751590 AGTGTAAGACCACGTCCAGGACATGGCATCGGC-ATTGAGATGAGT-GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAAGATGA-TAGCC
* * * *
51751638 AGTGGAAGACATGTTTGGGACATGCATCGGCCT-CGAGA-CATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATGAT-AGCC
* * **
51751684 AATGTAAGACATGTCTGGGACATGCATTGGCTACAAGATGATAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGCC
* * **
51751730 AGTGTAAGGCCATGTCTGGGACATGGCATCGACT-TGAGATG-TAAGCC
1 AGTGTAA-GACATGTCTGGGACAT-GCATCGGCTACAAGATGAT-AGCC
* *
51751777 AGTGTAGGACCGTGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
51751807 AGCACCTTAC
Statistics
Matches: 165, Mismatches: 38, Indels: 27
0.72 0.17 0.12
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 62 0.38
47 71 0.43
48 28 0.17
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGCC
Found at i:51751797 original size:140 final size:141
Alignment explanation
Indices: 51751538--51751806 Score: 321
Period size: 140 Copynumber: 1.9 Consensus size: 141
51751528 GTTACTTGCG
* **
51751538 TAAGCAAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGAGTCAGTGTAAGACCAC
1 TAAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCAC
* * * *
51751603 GTCCAGGACATGGCATCGGCATTGAGATGAGTGCTAGTGGAAGACATGTTTGGGACAT-GCATCG
66 GTCCAGGACATGGCATCGACATTGAGATGAGAGCCAGTGGAAGACATGTCTGGGACATGGCATCG
51751667 GCCTCGAGACA
131 GCCTCGAGACA
* * * * *
51751678 TAAGCCAA-TGTAAGACATGTCTGGGACATGCATTGGCTACAAGATGATAGTTAGTGTAAGGCCA
1 TAAG-CAAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCA
* ** * * *
51751742 TGTCTGGGACATGGCATCGAC-TTGAGATGTA-AGCCAGTGTAGGACCGTGTCTGGGACATGGCA
65 CGTCCAGGACATGGCATCGACATTGAGATG-AGAGCCAGTGGAAGA-CATGTCTGGGACATGGCA
51751805 TC
128 TC
51751807 AGCACCTTAC
Statistics
Matches: 107, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
139 17 0.16
140 82 0.77
141 8 0.07
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (141 bp):
TAAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCAC
GTCCAGGACATGGCATCGACATTGAGATGAGAGCCAGTGGAAGACATGTCTGGGACATGGCATCG
GCCTCGAGACA
Found at i:51756270 original size:96 final size:94
Alignment explanation
Indices: 51756140--51756605 Score: 738
Period size: 96 Copynumber: 4.9 Consensus size: 94
51756130 TTAGGATTCT
* *
51756140 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
51756204 GTGTATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
51756234 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51756299 AGTGTATATATATGTGATAAGGCCTAATGGCCG
64 AGTG--TATATATGTGATAAGGCCTAATGGCCG
51756332 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
51756397 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
51756428 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51756493 AGTGTATATATGTGATAAGGCCTAATGGCCG
64 AGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
51756524 ATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCAACGTGATGGATGTGAAA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAA
* *
51756588 GTGTATAAATATGATAAG
65 GTGTATATATGTGATAAG
51756606 TCCCGAAGGG
Statistics
Matches: 354, Mismatches: 10, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
93 6 0.02
94 65 0.18
96 189 0.53
98 94 0.27
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:51756279 original size:49 final size:49
Alignment explanation
Indices: 51756161--51756600 Score: 745
Period size: 49 Copynumber: 9.1 Consensus size: 49
51756151 GTGAACATGC
51756161 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
51756208 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
51756257 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
51756306 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
51756353 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
51756402 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
51756451 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
51756498 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * *
51756545 ATATATGTGA-CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTAT
*
51756594 AAATATG
1 ATATATG
51756601 ATAAGTCCCG
Statistics
Matches: 379, Mismatches: 7, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
46 5 0.01
47 175 0.46
49 199 0.53
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:51756331 original size:145 final size:145
Alignment explanation
Indices: 51756161--51756600 Score: 787
Period size: 145 Copynumber: 3.0 Consensus size: 145
51756151 GTGAACATGC
51756161 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
51756226 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
51756291 AATGTGAAAGTGTAT
131 AATGTGAAAGTGTAT
51756306 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
51756371 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
51756436 AATGTGAAAGTGTAT
131 AATGTGAAAGTGTAT
51756451 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * * *
51756516 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA-CAGGGCTGAGTGGCCAACGTGAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT-AATGGCCGATGTGAT
*
51756578 GGATGTGAAAGTGTAT
130 GAATGTGAAAGTGTAT
*
51756594 AAATATG
1 ATATATG
51756601 ATAAGTCCCG
Statistics
Matches: 287, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
142 5 0.02
143 44 0.15
145 238 0.83
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (145 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTAT
Found at i:51756587 original size:47 final size:47
Alignment explanation
Indices: 51756140--51756605 Score: 738
Period size: 47 Copynumber: 9.7 Consensus size: 47
51756130 TTAGGATTCT
* *
51756140 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
51756187 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51756234 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
51756283 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
51756332 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51756379 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
51756428 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
51756477 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
51756524 ATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCG
* * * *
51756571 ACGTGATGGATGTGAAAGTGTATAAATATGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51756606 TCCCGAAGGG
Statistics
Matches: 401, Mismatches: 11, Indels: 13
0.94 0.03 0.03
Matches are distributed among these distances:
46 6 0.01
47 201 0.50
48 2 0.00
49 192 0.48
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:51756780 original size:37 final size:37
Alignment explanation
Indices: 51756724--51756802 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51756714 CCGAGCTCTA
* * *
51756724 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51756761 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51756798 AAGAC
1 AAGAC
51756803 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51759032 original size:24 final size:24
Alignment explanation
Indices: 51759005--51759055 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
51758995 TACTAACTAA
51759005 GAATGCATAGAAAGAAAAACTTGG
1 GAATGCATAGAAAGAAAAACTTGG
51759029 GAATGCATAGAAAGAAAAACTTGG
1 GAATGCATAGAAAGAAAAACTTGG
51759053 GAA
1 GAA
51759056 AATACTTTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.51, C:0.08, G:0.25, T:0.16
Consensus pattern (24 bp):
GAATGCATAGAAAGAAAAACTTGG
Found at i:51767265 original size:40 final size:40
Alignment explanation
Indices: 51767027--51767268 Score: 364
Period size: 40 Copynumber: 6.0 Consensus size: 40
51767017 CGGATGATAA
* *
51767027 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
51767067 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
51767107 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51767147 TCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
51767187 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51767227 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
51767267 CC
1 CC
51767269 TGTTAAATTC
Statistics
Matches: 188, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 185 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51770360 original size:23 final size:23
Alignment explanation
Indices: 51770334--51770380 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
51770324 AATTCTATTG
*
51770334 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
51770357 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
51770380 T
1 T
51770381 AATGTCACGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:51771707 original size:6 final size:6
Alignment explanation
Indices: 51771698--51771743 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
51771688 GATGATGATG
* *
51771698 TTTAAT TTTAAT TTTAAT TTTAAT TTTTAT TTTTAT TCTT-AT TTTA
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT T-TTAAT TTTA
51771744 TGTTTTTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
5 2 0.05
6 33 0.89
7 2 0.05
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (6 bp):
TTTAAT
Found at i:51777950 original size:43 final size:43
Alignment explanation
Indices: 51777884--51777967 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
51777874 AAATCGTACA
*
51777884 ATGCCAACGTCCCAAACGTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTAC-TCGTAAACACATATCG
51777927 ATGCC-ACTGTCCCAAACAG-GGTCTTACTCGTAAACACATAT
1 ATGCCAAC-GTCCCAAAC-GTGGTCTTACTCGTAAACACATAT
51777968 TGGAATCACA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
42 3 0.08
43 33 0.89
44 1 0.03
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACGTGGTCTTACTCGTAAACACATATCG
Found at i:51786391 original size:46 final size:46
Alignment explanation
Indices: 51786256--51786469 Score: 154
Period size: 46 Copynumber: 4.6 Consensus size: 46
51786246 ACTTGCGTGA
* * **
51786256 GCTAGTGTAAGATATGTCTGGGACATGCATCGGCCATATTATGA-GA-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCC-TACGA-GACGAT
* *** * *
51786302 G-TCAGTGTAGGACCATGTCCAAGACATGGCATCAGCAT-TGAGACGAGT
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTACGAGACGA-T
*
51786350 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGACGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTACGAGACG-AT
* * * *
51786396 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCTACAAGATGAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTACGAGACGAT
51786441 AG-TCAGTGTAAGACCATGTCTGGGACATG
1 -GCT-AGTGTAAGA-CATGTCTGGGACATG
51786470 GCATTGACAG
Statistics
Matches: 135, Mismatches: 21, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
45 7 0.05
46 73 0.54
47 38 0.28
48 16 0.12
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTACGAGACGAT
Found at i:51786485 original size:47 final size:47
Alignment explanation
Indices: 51786353--51786517 Score: 160
Period size: 47 Copynumber: 3.5 Consensus size: 47
51786343 GACGAGTGCT
* * * *
51786353 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCT-CGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GACTACAAGATGTGAGCC
* *
51786399 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTACAAGATGAT-AGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACTACAAGATG-TGAGCC
* **
51786445 AGTGTAAGACCATGTCTGGGACATGGCATTGAC-AGGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGACTACAAGATGTGAGCC
* *
51786492 AGTGTAAGATCGTGTTTGGGACATGG
1 AGTGTAAGA-CATGTCTGGGACATGG
51786518 TGTCGGCACC
Statistics
Matches: 102, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
45 3 0.03
46 46 0.45
47 47 0.46
48 6 0.06
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACTACAAGATGTGAGCC
Found at i:51786512 original size:140 final size:140
Alignment explanation
Indices: 51786259--51786516 Score: 322
Period size: 140 Copynumber: 1.8 Consensus size: 140
51786249 TGCGTGAGCT
* * ** *
51786259 AGTGTAAGATATGTCTGGGACATGCATCGGCCATATTATGAGAGTCAGTGTAGGACCATGTCCAA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCATGTCCAA
* * *
51786324 GACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA
66 GACATGGCATCAGCATGGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA
51786389 GACGTAAGCC
131 GACGTAAGCC
* * ***
51786399 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGTCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCATGTCCAA
* * * * *
51786464 GACATGGCAT-TGACA-GGAGATGTGAGCCAGTGTAAGATCGTGTTTGGGACATG
66 GACATGGCATCAG-CATGGAGACGAGAGCCAGTGTAAGA-CATGTCTGGGACATG
51786517 GTGTCGGCAC
Statistics
Matches: 98, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
139 18 0.18
140 80 0.82
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGTCAGTGTAAGACCATGTCCAA
GACATGGCATCAGCATGGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA
GACGTAAGCC
Found at i:51794821 original size:40 final size:40
Alignment explanation
Indices: 51794758--51795065 Score: 368
Period size: 40 Copynumber: 7.5 Consensus size: 40
51794748 ACCCAAGTAT
* *
51794758 CTTCGGGATTTAGCCGGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
51794798 CTTCGGGACTTTGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
51794841 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * **
51794881 CTTCGGGTCTTAGCCCGAATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
51794921 CTTCGGTACTTAGCTCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
51794961 CTCCGGGACTTAGCCTGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
51795004 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
51795044 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
51795066 CATCCGAATA
Statistics
Matches: 227, Mismatches: 31, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.01
40 156 0.69
43 69 0.30
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:51794897 original size:83 final size:83
Alignment explanation
Indices: 51794758--51795059 Score: 423
Period size: 83 Copynumber: 3.7 Consensus size: 83
51794748 ACCCAAGTAT
* * * *
51794758 CTTCGGGATTTAGCCGGGATATAGTCACTAGCACAAATGCCTTCGGGACTTTGCCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGC
51794823 AACTACTCGCACAAATGC
66 AACTACTCGCACAAATGC
* * **
51794841 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGAATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
**
51794906 C-ACTA---GCATGAATGC
65 CAACTACTCGCACAAATGC
* * * * *
51794921 CTTCGGTACTTAGCTCGGATATAGTCACTAGCACAAATGCCTCCGGGACTTAGCCTGGGTATAGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGC
51794986 AACTACTCGCACAAATGC
66 AACTACTCGCACAAATGC
*
51795004 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
51795060 AGATATCATC
Statistics
Matches: 187, Mismatches: 27, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 67 0.36
83 118 0.63
84 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (83 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGC
AACTACTCGCACAAATGC
Found at i:51795065 original size:123 final size:121
Alignment explanation
Indices: 51794758--51795065 Score: 395
Period size: 123 Copynumber: 2.5 Consensus size: 121
51794748 ACCCAAGTAT
* * * *
51794758 CTTCGGGATTTAGCCGGGATATAGTCACTAGCACAAATGCCTTCGGGACTTTGCCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGC
* *
51794823 AACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
66 AACTA--CGCACAAATGCCTCCGGGACTTAGCCCGGATATAGCAACTTGCACAAATGC
* * ** * *
51794881 CTTCGGGTCTTAGCCCGAATATAGTCACTAGCATGAATGCCTTCGGTACTTAGCTCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG-
* *
51794946 C-ACTA-GCACAAATGCCTCCGGGACTTAGCCTGGGTATAGCAACTACTCGCACAAATGC
65 CAACTACGCACAAATGCCTCCGGGACTTAGCCCGGATATAGCAACT--T-GCACAAATGC
* * *
51795004 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
51795066 CATCCGAATA
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
120 35 0.22
122 1 0.01
123 121 0.77
124 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (121 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGC
AACTACGCACAAATGCCTCCGGGACTTAGCCCGGATATAGCAACTTGCACAAATGC
Found at i:51796885 original size:12 final size:12
Alignment explanation
Indices: 51796868--51796893 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51796858 AACTTAAACG
51796868 ATTTGGAATACT
1 ATTTGGAATACT
51796880 ATTTGGAATACT
1 ATTTGGAATACT
51796892 AT
1 AT
51796894 CGGATATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
ATTTGGAATACT
Found at i:51797120 original size:46 final size:47
Alignment explanation
Indices: 51796929--51797193 Score: 244
Period size: 47 Copynumber: 5.7 Consensus size: 47
51796919 AAGGTATAAT
* * *
51796929 GCCGATGGCATGTCTCGGACATGGTCTTACACTGGC-T-CATCTATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATC--TCAA
* * * *
51796976 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCA-ACTATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACA-TCTCAA
* * * *
51797023 GTCAATGCCATGTCCCAGACATGGTCTTACATTGAC--ACATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCA-A
*
51797069 GCCGATG-CATGTCCCAGACAT-TTCTTACACTGGCTTACATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAA
* *
51797114 GGCCGATG-CATGTCCCAGACAT-ATCTTACACTAGCTCT-CATCTCAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCAA
* * *
51797160 TCCCGATGCCATGTCCCAAACATGGTGTTACACT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT
51797194 AGCACACAAA
Statistics
Matches: 185, Mismatches: 22, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
44 10 0.05
45 20 0.11
46 62 0.34
47 83 0.45
48 9 0.05
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAA
Found at i:51798581 original size:56 final size:56
Alignment explanation
Indices: 51798495--51798614 Score: 224
Period size: 56 Copynumber: 2.1 Consensus size: 56
51798485 ACAAGGGATG
51798495 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGGAA-AATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAAT-GGAAGAATAAAATAAGAAGC
51798551 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51798607 ATGGGCAA
1 ATGGGCAA
51798615 TAAACTAATA
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
55 4 0.06
56 59 0.94
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:51800527 original size:47 final size:47
Alignment explanation
Indices: 51800471--51802134 Score: 2771
Period size: 47 Copynumber: 34.8 Consensus size: 47
51800461 GATTTAGGAT
51800471 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
51800518 ACGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51800565 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51800612 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51800661 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51800708 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATA--TG-T-----GATAAGGCCTAATGG
51800765 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51800814 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51800863 CCGATGTGATGAA--T----GTG-ATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51800903 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51800950 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51800999 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801046 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51801095 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801142 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801189 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801236 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51801285 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801332 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATA--TG-T-----GATAAGGCCTAATGG
51801387 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51801436 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51801485 CCGATGTGATGAA--T----GTG-ATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801525 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801572 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51801621 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801668 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51801717 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801764 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51801813 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801860 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801907 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
51801954 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
51802003 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * *
51802050 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * *
51802097 CCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51802135 TCCCGAAGGG
Statistics
Matches: 1555, Mismatches: 12, Indels: 100
0.93 0.01 0.06
Matches are distributed among these distances:
40 72 0.05
42 2 0.00
43 6 0.00
46 6 0.00
47 831 0.53
49 538 0.35
50 1 0.00
51 2 0.00
52 1 0.00
54 2 0.00
55 42 0.03
57 52 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
Found at i:51800534 original size:96 final size:89
Alignment explanation
Indices: 51800471--51802079 Score: 1662
Period size: 96 Copynumber: 16.9 Consensus size: 89
51800461 GATTTAGGAT
*
51800471 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
51800536 AAGTG-TATATATGTGATAAGGCCTAATGG
66 AAGTGATATATATATG-T---G-ATAA-GG
51800565 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51800630 AAGTG-TATATATATGTGATAAGGCCTAATGG
66 AAGTGATATATATATGTG---A----TAA-GG
51800661 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
51800726 AAGTGTATATATATGTGATAAGGCGATAAGG
66 AAGTG-ATATATA--T-AT---GTGATAAGG
* * *
51800757 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 CC-GAT-G-TGATG-AA----TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
51800822 ATGAATGTGAAAGTG-TATATATATGTGATAAGG
56 ATGAATGTGAAAGTGATATATATATGTGATAAGG
* **
51800855 CCTAATG-GCCG-ATGTGATGAA-TGTGATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 CC-GATGTGATGAATGTGA--AAGTGT-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
51800917 GTGAAAGTG-TATATATGTGATAAGGCCTAATGG
62 GTGAAAGTGATATATATATG-T---G-ATAA-GG
51800950 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
51801015 GAAAGTG-TATATATGTGATAAGGCCTAATGG
64 GAAAGTGATATATATATG-T---G-ATAA-GG
51801046 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
51801111 GAAAGTG-TATATATGTGATAAGGCCTAATGG
64 GAAAGTGATATATATATG-T---G-ATAA-GG
51801142 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
51801207 AAGTG-TATATATGTGATAAGGCCTAATGG
66 AAGTGATATATATATG-T---G-ATAA-GG
51801236 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
51801301 GAAAGTG-TATATATGTGATAAGGCCTAATGG
64 GAAAGTGATATATATATG-T---G-ATAA-GG
51801332 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCGATAAGGCCTAATGGCCGATGTGAT
1 CCGATGTGATGAATGTGAAAGTGTATATA--TG-T-----GATAAGGCCTAATGGCCGATGTGAT
51801397 GAATGTGAAAGTG-TATATATATGTGATAAGGCCTAATGG
58 GAATGTGAAAGTGATATATATATGTG---A----TAA-GG
51801436 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * *
51801501 G--A-T-ATATGTGATAAG-GCCTAATGG
64 GAAAGTGATATAT-ATATGTG-ATAA-GG
51801525 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51801590 AAGTG-TATATATATGTGATAAGGCCTAATGG
66 AAGTGATATATATATGTG---A----TAA-GG
51801621 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51801686 AAGTG-TATATATATGTGATAAGGCCTAATGG
66 AAGTGATATATATATGTG---A----TAA-GG
51801717 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51801782 AAGTG-TATATATATGTGATAAGGCCTAATGG
66 AAGTGATATATATATGTG---A----TAA-GG
51801813 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
51801878 AAGTG-TATATATGTGATAAGGCCTAATGG
66 AAGTGATATATATATG-T---G-ATAA-GG
51801907 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51801972 AAGTG-TATATATATGTGATAAGGCCTAATGG
66 AAGTGATATATATATGTG---A----TAA-GG
51802003 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51802068 AAGTG-TATATAT
66 AAGTGATATATAT
51802080 GTGACAGGGC
Statistics
Matches: 1403, Mismatches: 33, Indels: 156
0.88 0.02 0.10
Matches are distributed among these distances:
87 41 0.03
88 1 0.00
89 94 0.07
90 11 0.01
91 2 0.00
93 4 0.00
94 271 0.19
95 16 0.01
96 736 0.52
97 9 0.01
98 54 0.04
99 4 0.00
100 3 0.00
101 6 0.00
102 48 0.03
103 1 0.00
104 49 0.03
106 53 0.04
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (89 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGATATATATATGTGATAAGG
Found at i:51800666 original size:143 final size:142
Alignment explanation
Indices: 51800471--51802134 Score: 2783
Period size: 143 Copynumber: 11.6 Consensus size: 142
51800461 GATTTAGGAT
*
51800471 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51800536 AAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
66 AAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
51800600 AAGGCCTAATGG
131 AAGGCCTAATGG
51800612 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
51800677 GAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
64 GAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA--
51800741 TGATAAGGCGATAAGGCCTAATGG
125 TG-T-----GATAAGGCCTAATGG
51800765 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
51800830 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA--T----GTG-ATATATGT
64 GAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
51800888 GATAAGGCCTAATGG
128 GATAAGGCCTAATGG
51800903 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51800968 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51801033 TAAGGCCTAATGG
130 TAAGGCCTAATGG
51801046 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
51801111 GAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
64 GAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
51801175 ATAAGGCCTAATGG
129 ATAAGGCCTAATGG
51801189 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51801254 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51801319 TAAGGCCTAATGG
130 TAAGGCCTAATGG
51801332 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCGATAAGGCCTAATGGCCGATGTGAT
1 CCGATGTGATGAATGTGAAAGTGTATATA--TG-T-----GATAAGGCCTAATGGCCGATGTGAT
51801397 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
58 GAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
51801462 ATATATGTGATAAGGCCTAATGG
120 ATATATGTGATAAGGCCTAATGG
51801485 CCGATGTGATGAA--T----GTG-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51801543 AAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
66 AAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
51801607 ATAAGGCCTAATGG
129 ATAAGGCCTAATGG
51801621 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51801686 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51801751 TAAGGCCTAATGG
130 TAAGGCCTAATGG
51801764 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
51801829 GAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
64 GAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
51801893 ATAAGGCCTAATGG
129 ATAAGGCCTAATGG
51801907 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
51801972 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51802037 TAAGGCCTAATGG
130 TAAGGCCTAATGG
* * * * * * *
51802050 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
51802115 AAGTG-TATAAATGTGATAAG
66 AAGTGATATATATGTGATAAG
51802135 TCCCGAAGGG
Statistics
Matches: 1466, Mismatches: 9, Indels: 96
0.93 0.01 0.06
Matches are distributed among these distances:
136 172 0.12
138 78 0.05
141 131 0.09
142 6 0.00
143 656 0.45
144 4 0.00
145 149 0.10
146 11 0.01
147 5 0.00
148 1 0.00
149 3 0.00
151 88 0.06
153 125 0.09
155 37 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (142 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATGG
Found at i:51800801 original size:27 final size:27
Alignment explanation
Indices: 51800711--51800801 Score: 71
Period size: 27 Copynumber: 3.3 Consensus size: 27
51800701 CTAATGGCCG
51800711 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
* * **
51800738 ATGTGAT-AAGGCGATAAG-GCCTA-ATGGCCG
1 ATGTGATGAATGTGA-AAGTG--TATAT---AT
51800768 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
51800795 ATGTGAT
1 ATGTGAT
51800802 AAGGCCTAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 18
0.64 0.11 0.25
Matches are distributed among these distances:
26 6 0.13
27 19 0.40
28 2 0.04
29 2 0.04
30 12 0.26
31 6 0.13
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATATAT
Found at i:51802309 original size:36 final size:37
Alignment explanation
Indices: 51802254--51802331 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
51802244 CCGAGCTCTA
* * *
51802254 AAGACCCGATGACTACGTGTGGGGATT-TGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51802290 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51802327 AAGAC
1 AAGAC
51802332 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 24 0.65
37 13 0.35
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51810717 original size:28 final size:29
Alignment explanation
Indices: 51810681--51810736 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
51810671 TTGATGAAAA
* *
51810681 TGCATAATATG-GATTAAATTGTGAAATG
1 TGCAAAATATGTGATTAAAATGTGAAATG
*
51810709 TGCAAAATATGTGGTTAAAATGTGAAAT
1 TGCAAAATATGTGATTAAAATGTGAAAT
51810737 AAATGAAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.41, C:0.04, G:0.21, T:0.34
Consensus pattern (29 bp):
TGCAAAATATGTGATTAAAATGTGAAATG
Found at i:51824782 original size:16 final size:17
Alignment explanation
Indices: 51824750--51824787 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
51824740 CTTTCATTAA
51824750 GTTTTTAAGACTTATTT
1 GTTTTTAAGACTTATTT
51824767 -TTTTTAAGA-TTCATTT
1 GTTTTTAAGACTT-ATTT
51824783 GTTTT
1 GTTTT
51824788 CCTTTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 2 0.11
16 13 0.68
17 4 0.21
ACGTcount: A:0.21, C:0.05, G:0.11, T:0.63
Consensus pattern (17 bp):
GTTTTTAAGACTTATTT
Found at i:51841396 original size:27 final size:27
Alignment explanation
Indices: 51841333--51841419 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 27
51841323 CAGAAAGAGT
*
51841333 ATCAGGTGGGCCTTAGCCCAATAACAGA
1 ATCAGGTGGGCCTAAGCCCAAT-ACAGA
*
51841361 ATCAGGTGGGCCTAAGCCTAATACAGA
1 ATCAGGTGGGCCTAAGCCCAATACAGA
* *
51841388 ATCAAGTGGGCCTAAGCCCAATACAAA
1 ATCAGGTGGGCCTAAGCCCAATACAGA
51841415 ATCAG
1 ATCAG
51841420 TATCAGATGC
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 33 0.62
28 20 0.38
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (27 bp):
ATCAGGTGGGCCTAAGCCCAATACAGA
Found at i:51842150 original size:19 final size:19
Alignment explanation
Indices: 51842115--51842152 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
51842105 GTGTGGGGCC
*
51842115 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTAGGCCCA
51842134 CACG-GCCCATCTAGGCCCA
1 CACGAGCCCAT-TAGGCCCA
51842153 ACGTGGCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.21, C:0.45, G:0.24, T:0.11
Consensus pattern (19 bp):
CACGAGCCCATTAGGCCCA
Found at i:51856322 original size:45 final size:44
Alignment explanation
Indices: 51856227--51856351 Score: 134
Period size: 45 Copynumber: 2.9 Consensus size: 44
51856217 TTTTCTCAAA
*
51856227 TCACCGGCATT-TCA-CCTGTTAGGCTCG-AGGCCC-AATATCAAT
1 TCACCGGCATTAT-AGCCTGCTAGGCTCGAAGGCCCGAATAT-AAT
51856269 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-AT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TAAT
** * *
51856313 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAA
51856352 CAATCAAGTC
Statistics
Matches: 72, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
42 12 0.17
43 13 0.18
44 8 0.11
45 38 0.53
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATAAT
Found at i:51857821 original size:40 final size:40
Alignment explanation
Indices: 51857784--51857968 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
51857774 GCTACTCGTT
*
51857784 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
51857824 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
51857864 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-ACTCGCA
* * * * *
51857903 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
51857944 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51857969 CATCATTCAA
Statistics
Matches: 127, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 79 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51857895 original size:79 final size:82
Alignment explanation
Indices: 51857784--51857968 Score: 231
Period size: 79 Copynumber: 2.3 Consensus size: 82
51857774 GCTACTCGTT
* *
51857784 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTA-ACTCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTATA-TCGCACAAATGCCTTC-GGATCTTAACC
* *
51857846 CGGATTTAGTAAC-TCGCA
64 CGGATATAGTAACTTAGCA
**
51857864 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATATCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTATATCGCACAAATGCCTTCGGATCTTAACCCG
* *
51857927 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
51857944 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51857969 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 35 0.38
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTATATCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:51859901 original size:43 final size:43
Alignment explanation
Indices: 51859835--51860001 Score: 255
Period size: 43 Copynumber: 3.9 Consensus size: 43
51859825 ACATATCATT
* * * *
51859835 TCACCGGCATTACGCTTGTTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
51859878 TCACCGGTACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
51859921 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
51859964 TTACCGGCACTAAGCCTGCTA-GCACGAAGGCCTGAATA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
51860002 TAATACTAGC
Statistics
Matches: 114, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 16 0.14
43 98 0.86
ACGTcount: A:0.29, C:0.32, G:0.24, T:0.15
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:51875562 original size:49 final size:49
Alignment explanation
Indices: 51875442--51875614 Score: 231
Period size: 49 Copynumber: 3.5 Consensus size: 49
51875432 TGAGGTCGCA
** **
51875442 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT-GGTCACG
* *
51875492 TGTGTAGTACTAAGCG-TGGCTACTACGTGTATCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCACG
* * * *
51875540 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCACG
*
51875589 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
51875615 TGCGTACTAG
Statistics
Matches: 109, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
48 22 0.20
49 72 0.66
50 15 0.14
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCACG
Found at i:51880573 original size:14 final size:14
Alignment explanation
Indices: 51880554--51880581 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51880544 TTTTGTGTTC
51880554 TTATCAAAAATTTA
1 TTATCAAAAATTTA
51880568 TTATCAAAAATTTA
1 TTATCAAAAATTTA
51880582 GAATGTCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TTATCAAAAATTTA
Found at i:51881623 original size:17 final size:18
Alignment explanation
Indices: 51881601--51881634 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51881591 TTTACCTGTA
*
51881601 TGGGGCCGACA-GGCCCG
1 TGGGGCCCACACGGCCCG
51881618 TGGGGCCCACACGGCCC
1 TGGGGCCCACACGGCCC
51881635 ATGTTGGCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.12, C:0.41, G:0.41, T:0.06
Consensus pattern (18 bp):
TGGGGCCCACACGGCCCG
Found at i:51885749 original size:40 final size:41
Alignment explanation
Indices: 51885673--51885751 Score: 99
Period size: 40 Copynumber: 1.9 Consensus size: 41
51885663 ACAGGGGTTT
*
51885673 TCACACAGCCAGACACATGCCCATGTCATTGGCCCGTGTCCC
1 TCACACAGCCAGACACA-GCCCATGTCATTAGCCCGTGTCCC
* *
51885715 TCACACGGCCACGACAC-GCCCGTGTC-TTAGCCCGTGT
1 TCACACAGCCA-GACACAGCCCATGTCATTAGCCCGTGT
51885752 GCAAAAACAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 10 0.30
41 8 0.24
42 10 0.30
43 5 0.15
ACGTcount: A:0.19, C:0.41, G:0.22, T:0.19
Consensus pattern (41 bp):
TCACACAGCCAGACACAGCCCATGTCATTAGCCCGTGTCCC
Found at i:51886762 original size:46 final size:46
Alignment explanation
Indices: 51886692--51886856 Score: 194
Period size: 46 Copynumber: 3.5 Consensus size: 46
51886682 GTGCTGATGC
* *
51886692 CATGTCCCAGTCATGGTCTTACACT-GACTATCATCTCGTA-GCCGATA
1 CATGTCCCAGACATGGTCTTACACTAG-CT-TCGTCTCG-AGGCCGATA
*
51886739 CATGTCCCAGACAT-GTCTTACACTAGCTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTT-CGTCTCGAGGCCGATA
* * *
51886785 CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCT-TCGTCTCGAGGCCGAT-A
51886832 CATGTCCCAGACATGGTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
51886857 GGCTCTCATA
Statistics
Matches: 106, Mismatches: 6, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
45 2 0.02
46 65 0.61
47 29 0.27
48 10 0.09
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTAGCTTCGTCTCGAGGCCGATA
Found at i:51897187 original size:27 final size:28
Alignment explanation
Indices: 51897103--51897200 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
51897093 CATGAGATTG
* * * *
51897103 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
51897132 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51897160 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51897187 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
51897201 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51897211 original size:27 final size:27
Alignment explanation
Indices: 51897131--51897213 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
51897121 TAAATTGTAC
* *
51897131 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
51897159 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
51897186 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
51897213 A
1 A
51897214 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:51897214 original size:29 final size:27
Alignment explanation
Indices: 51897103--51897214 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
51897093 CATGAGATTG
** * *
51897103 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
51897132 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
51897160 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
51897187 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
51897215 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:51905364 original size:27 final size:28
Alignment explanation
Indices: 51905280--51905377 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
51905270 CATGAGATTG
* * * *
51905280 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
51905309 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51905337 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51905364 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
51905378 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51905388 original size:27 final size:27
Alignment explanation
Indices: 51905308--51905390 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
51905298 TAAATTGTAC
* *
51905308 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
51905336 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
51905363 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
51905390 A
1 A
51905391 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:51905391 original size:29 final size:27
Alignment explanation
Indices: 51905280--51905391 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
51905270 CATGAGATTG
** * *
51905280 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
51905309 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
51905337 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
51905364 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
51905392 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:51913343 original size:24 final size:23
Alignment explanation
Indices: 51913290--51913351 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
51913280 CAACCGTATT
* * *
51913290 TGCACACATAGTGCTAATTACAC
1 TGCACACATAGTGCCAAGTAAAC
*
51913313 TCACACACATAGTGCCATAGTAAAC
1 T-GCACACATAGTGCCA-AGTAAAC
51913338 TGCACACATAGTGC
1 TGCACACATAGTGC
51913352 GTTGGATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
23 1 0.03
24 25 0.78
25 6 0.19
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (23 bp):
TGCACACATAGTGCCAAGTAAAC
Found at i:51919361 original size:40 final size:40
Alignment explanation
Indices: 51919317--51919585 Score: 391
Period size: 40 Copynumber: 6.7 Consensus size: 40
51919307 GCTACTTGCT
*
51919317 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
51919357 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
51919397 GAAATGCCTTCGAGG-CTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCG-GGACTTAGCCCGGTTATAGTAACTCGCA
* *
51919437 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
51919477 CAAATGCCTTCGGGACTTAGCCCTGTTATAATAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
51919517 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
51919557 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
51919586 CATCCGAATA
Statistics
Matches: 206, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
39 6 0.03
40 195 0.95
41 5 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51919512 original size:120 final size:119
Alignment explanation
Indices: 51919284--51919585 Score: 412
Period size: 120 Copynumber: 2.5 Consensus size: 119
51919274 ATACCAAGTA
* * * * *
51919284 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTTGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
* * * *
51919348 TAACTCGCACAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCAGAAATG
65 TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
*
51919403 CCTTCGAGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-T
1 CCTTCG-GGACTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TTAT
* * *
51919466 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCCTGTTATAATAACTCGTACAAATG
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
*
51919523 CCTTCGGGACTTAGCCCGGATTTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
51919586 CATCCGAATA
Statistics
Matches: 162, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
119 15 0.09
120 145 0.90
121 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
Found at i:51927623 original size:40 final size:40
Alignment explanation
Indices: 51927546--51927811 Score: 425
Period size: 40 Copynumber: 6.7 Consensus size: 40
51927536 GCTACTTGCT
51927546 CAAATGCCTTC-GGACTTAGCCCGG-TATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
51927584 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
51927624 CAAATGCCTTCGGGACTTAGCCC-GATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
51927663 CAAATGCCATCGGGACTTAGCCCGGATT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
51927703 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
51927743 CAAATGCCTTCGGGACTTAGCCCGGATTA-AGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
51927783 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
51927812 CATCTGAATA
Statistics
Matches: 211, Mismatches: 10, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
38 11 0.05
39 55 0.26
40 141 0.67
41 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51927654 original size:79 final size:80
Alignment explanation
Indices: 51927546--51927806 Score: 440
Period size: 79 Copynumber: 3.3 Consensus size: 80
51927536 GCTACTTGCT
*
51927546 CAAATGCCTTC-GGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
* *
51927609 TTATAGTAACTCGCA
66 TTATAGTCACTAGCA
*
51927624 CAAATGCCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGCCATCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
51927689 TT-TAGTCACTAGCA
66 TTATAGTCACTAGCA
*
51927703 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
51927768 ATTA-AGTCACTAGCA
65 ATTATAGTCACTAGCA
51927783 CAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
51927807 GTTATCATCT
Statistics
Matches: 173, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
78 11 0.06
79 84 0.49
80 78 0.45
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTATAGTCACTAGCA
Found at i:51930380 original size:47 final size:48
Alignment explanation
Indices: 51930309--51930522 Score: 210
Period size: 46 Copynumber: 4.6 Consensus size: 48
51930299 GTAAGGTGCC
** * **
51930309 GCCATGTCCCAGACATGGAATTACACTTACTCACATCTCAA-GTTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCACATCTCAAGGCCGAT
51930356 GCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCATA-GCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCA-CATCTCA-AGGCCGAT
* * * *
51930404 G-CATGTCCCAGACAT-ATCTTACACTGGCTTACGTCTCAAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCACATCTCAAGGCCGAT
* * * * *
51930450 G-CATGTCCCAGACA-AGTCTTACACT-AGCTCTCGTCTCAATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCACATCTCAAGGCCGAT
*
51930496 GCCATGTGCCAGACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
51930523 AGCTCTCATA
Statistics
Matches: 143, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.01
46 64 0.45
47 62 0.43
48 16 0.11
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCACATCTCAAGGCCGAT
Found at i:51930443 original size:93 final size:94
Alignment explanation
Indices: 51930309--51930522 Score: 224
Period size: 93 Copynumber: 2.3 Consensus size: 94
51930299 GTAAGGTGCC
* ** * * **
51930309 GCCATGTCCCAGACATGGA-ATTACACTTACTCACATCTCAA-GTTGATGCCATGTCCCAGACAT
1 GCCATGTCCCAGACAT-GATCTTACACTGGCTTACGTCTCAAGGCCGATG-CATGTCCCAGACA-
* *
51930372 GGTCTTACACT-GACTATCATCTC-ATAGCCGAT
63 AGTCTTACACTAG-CTATCATCTCAAT-GCCAAT
51930404 G-CATGTCCCAGACAT-ATCTTACACTGGCTTACGTCTCAAGGCCGATGCATGTCCCAGACAAGT
1 GCCATGTCCCAGACATGATCTTACACTGGCTTACGTCTCAAGGCCGATGCATGTCCCAGACAAGT
* *
51930467 CTTACACTAGCTCTCGTCTCAATGCCAAT
66 CTTACACTAGCTATCATCTCAATGCCAAT
* *
51930496 GCCATGTGCCAGACATGGTCTTACACT
1 GCCATGTCCCAGACATGATCTTACACT
51930523 AGCTCTCATA
Statistics
Matches: 100, Mismatches: 13, Indels: 13
0.79 0.10 0.10
Matches are distributed among these distances:
92 25 0.25
93 46 0.46
94 28 0.28
95 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (94 bp):
GCCATGTCCCAGACATGATCTTACACTGGCTTACGTCTCAAGGCCGATGCATGTCCCAGACAAGT
CTTACACTAGCTATCATCTCAATGCCAAT
Found at i:51936078 original size:28 final size:28
Alignment explanation
Indices: 51936046--51936120 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
51936036 ATATTCGACG
* *
51936046 TCTCGCCCACTAAGTTCCATACTCAACA
1 TCTCGCACACTAAGTGCCATACTCAACA
* **
51936074 TCTCGCACACTAAGTGCCATTCTCAATG
1 TCTCGCACACTAAGTGCCATACTCAACA
*
51936102 TTTCGCACACTAAGTGCCA
1 TCTCGCACACTAAGTGCCA
51936121 CATTTAGTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.27, C:0.35, G:0.12, T:0.27
Consensus pattern (28 bp):
TCTCGCACACTAAGTGCCATACTCAACA
Found at i:51939738 original size:96 final size:95
Alignment explanation
Indices: 51939570--51939744 Score: 226
Period size: 96 Copynumber: 1.8 Consensus size: 95
51939560 GGTAAAATGT
* * * * *
51939570 CGATGCCATGTCCCGGACATGGTCTTACACTAGCTCACAAGTTGAAGCTGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCACAAATTG-AGCCGATGCCATGTCCCAAA
* *
51939635 TATGGTCTTACACTAGCTCTCGTCTCATTGC
65 CAAGGTCTTACACTAGCTCTCGTCTCATTGC
* * *
51939666 CGATGCCATGTGCCAGACACGGTCTTACACTGGCTCTCATAATGTG-GCCGATGCCATGTCCCAA
1 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCACA-AAT-TGAGCCGATGCCATGTCCCAA
51939730 ACAAGGTCTTACACT
64 ACAAGGTCTTACACT
51939745 GGCACACATA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
96 63 0.94
97 2 0.03
98 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCACAAATTGAGCCGATGCCATGTCCCAAAC
AAGGTCTTACACTAGCTCTCGTCTCATTGC
Found at i:51939745 original size:48 final size:47
Alignment explanation
Indices: 51939570--51939791 Score: 180
Period size: 48 Copynumber: 4.6 Consensus size: 47
51939560 GGTAAAATGT
* *
51939570 CGATGCCATGTCCCGGACATGGTCTTACACTAGCTCACA-AGTTGAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATTG--GC
* * * * *
51939618 TGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCGTCTCATT-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAC--ATAATTGGC
* * * *
51939666 CGATGCCATGTGCCAGACACGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAAT-TGGC
* * * * **
51939714 CGATGCCATGTCCCAAACAAGGTCTTACACTGGCACACAT-ATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAAT--TGGC
* * *
51939762 CCACGCCATGTCCCAAACATGGTCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
51939792 GTGTCACAAT
Statistics
Matches: 143, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
46 3 0.02
47 3 0.02
48 135 0.94
51 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATTGGC
Found at i:51939825 original size:36 final size:37
Alignment explanation
Indices: 51939780--51939865 Score: 120
Period size: 37 Copynumber: 2.4 Consensus size: 37
51939770 TGTCCCAAAC
*
51939780 ATGGTCTTACACGT-GTCACAATGCCATAGCCCAGCT
1 ATGGTCTTACACGTCATCACAATGCCATAGCCCAGCT
* * *
51939816 ATGGCCTTACATGTCATCACGATGCCATAGCCCAGCT
1 ATGGTCTTACACGTCATCACAATGCCATAGCCCAGCT
*
51939853 ATGGTCTAACACG
1 ATGGTCTTACACG
51939866 CACTAACATG
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
36 12 0.29
37 30 0.71
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
ATGGTCTTACACGTCATCACAATGCCATAGCCCAGCT
Found at i:51942582 original size:40 final size:40
Alignment explanation
Indices: 51942529--51942693 Score: 138
Period size: 40 Copynumber: 4.4 Consensus size: 40
51942519 TCTCAATGTT
* *
51942529 TCGCACAGTAAGTGCCGTACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* *
51942569 TTGGACACTAAGTGCCATAC-T---C-AA--TA--T---A
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
*
51942597 TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* *** * * *
51942637 TCCCACACTAAGTGTTGTACATAGTCGAAACTATCTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
51942677 TCGCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
51942694 CATTTAGTCG
Statistics
Matches: 95, Mismatches: 18, Indels: 24
0.69 0.13 0.18
Matches are distributed among these distances:
28 18 0.19
29 1 0.01
31 1 0.01
32 1 0.01
33 4 0.04
35 4 0.04
36 1 0.01
37 1 0.01
39 1 0.01
40 63 0.66
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
Found at i:51942645 original size:68 final size:68
Alignment explanation
Indices: 51942504--51942650 Score: 213
Period size: 68 Copynumber: 2.2 Consensus size: 68
51942494 CAACATCTCG
* * * * * *
51942504 CACACTAAGTGCCATTCTCAATGTTTCGCACAGTAAGTGCCGTACATAGCCGAAGCTATCTCAAA
1 CACACTAAGTGCCATACTCAATATATCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
**
51942569 TTG
66 TCC
*
51942572 GACACTAAGTGCCATACTCAATATATCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
1 CACACTAAGTGCCATACTCAATATATCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
51942637 TCC
66 TCC
51942640 CACACTAAGTG
1 CACACTAAGTG
51942651 TTGTACATAG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (68 bp):
CACACTAAGTGCCATACTCAATATATCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
TCC
Found at i:51958819 original size:47 final size:47
Alignment explanation
Indices: 51958753--51959272 Score: 853
Period size: 47 Copynumber: 11.1 Consensus size: 47
51958743 GAAATGATAG
* *
51958753 TAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
51958800 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51958847 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51958894 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51958941 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51958988 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51959035 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51959082 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51959129 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51959176 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
51959222 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51959269 TAAG
1 TAAG
51959273 TCCCGAAGGG
Statistics
Matches: 454, Mismatches: 18, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
46 40 0.09
47 414 0.91
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51959449 original size:37 final size:37
Alignment explanation
Indices: 51959391--51959469 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
51959381 TCGAGCTCTA
* * *
51959391 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAG-ATTATGTCCGGGT
*
51959428 AAGACCCGATAACTTCATGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
51959465 AAGAC
1 AAGAC
51959470 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:51965308 original size:49 final size:49
Alignment explanation
Indices: 51965251--51965432 Score: 220
Period size: 49 Copynumber: 3.7 Consensus size: 49
51965241 CACGTATGTG
* *
51965251 GTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTA
* * * * * ***
51965300 GTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCATGTGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCATGTGTA
* *
51965351 GTACTAAGTGCAGGCTACTACATGTACCAGATTATTGGTCGCATGTGTA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTA
* *
51965400 GTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GTACTAAGTGCAGGCTACTACGTGTACCAGATA
51965433 GCTTCGGCTA
Statistics
Matches: 108, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 68 0.63
50 2 0.02
51 38 0.35
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
GTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTA
Found at i:51996633 original size:26 final size:26
Alignment explanation
Indices: 51996597--51996648 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
51996587 GGCCGAATGG
51996597 CCGATGTGATGAATGTGAAAGTGTAT
1 CCGATGTGATGAATGTGAAAGTGTAT
51996623 CCGATGTGATGAATGTGAAAGTGTAT
1 CCGATGTGATGAATGTGAAAGTGTAT
51996649 ATATATGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (26 bp):
CCGATGTGATGAATGTGAAAGTGTAT
Found at i:51996722 original size:47 final size:47
Alignment explanation
Indices: 51996623--51996850 Score: 348
Period size: 47 Copynumber: 4.8 Consensus size: 47
51996613 GAAAGTGTAT
*
51996623 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGG
* *
51996672 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
51996719 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
* * *
51996766 CCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
* * * *
51996813 CCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51996851 TCCCGAAGGG
Statistics
Matches: 169, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 146 0.86
49 23 0.14
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
Found at i:51997025 original size:37 final size:37
Alignment explanation
Indices: 51996969--51997047 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
51996959 CCAAGCTCTA
* *
51996969 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
51997006 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51997043 AAGAC
1 AAGAC
51997048 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:52007621 original size:26 final size:27
Alignment explanation
Indices: 52007592--52007713 Score: 117
Period size: 26 Copynumber: 4.6 Consensus size: 27
52007582 TTAGTTTACC
*
52007592 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACTCAAATACCCCCAGTTTGTA
* *
52007618 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTCAAA-TACCCCCAGTTTGTA
* * * *
52007645 AAATTACCCAAATTCCTCGA-TTTGTA
1 AAATTACTCAAATACCCCCAGTTTGTA
* *
52007671 AAATTACTAAAATACCCTCAGTTTGTA
1 AAATTACTCAAATACCCCCAGTTTGTA
*
52007698 AAATTACT-GAATACCC
1 AAATTACTCAAATACCC
52007714 TCGACATGTA
Statistics
Matches: 77, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
25 3 0.04
26 41 0.53
27 29 0.38
28 4 0.05
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTCAAATACCCCCAGTTTGTA
Found at i:52007636 original size:27 final size:25
Alignment explanation
Indices: 52007592--52007740 Score: 91
Period size: 26 Copynumber: 5.6 Consensus size: 25
52007582 TTAGTTTACC
*
52007592 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTAC-CAAATACCCCCAGTTGTA
* *
52007618 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAA-TACCCCCAG-TTGTA
* * * *
52007645 AAATTACCCAAATTCCTCGATTTGTA
1 AAATTA-CCAAATACCCCCAGTTGTA
* *
52007671 AAATTACTAAAATACCCTCAGTTTGTA
1 AAATTAC-CAAATACCCCCAG-TTGTA
** * **
52007698 AAATTACTGAATACCCTCGACATGTA
1 AAATTACCAAATACCC-CCAGTTGTA
*
52007724 AAATTATCAAAGTACCC
1 AAATTACCAAA-TACCC
52007741 TCGAATTACA
Statistics
Matches: 92, Mismatches: 24, Indels: 13
0.71 0.19 0.10
Matches are distributed among these distances:
25 4 0.04
26 51 0.55
27 32 0.35
28 5 0.05
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (25 bp):
AAATTACCAAATACCCCCAGTTGTA
Found at i:52007723 original size:26 final size:27
Alignment explanation
Indices: 52007667--52007742 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
52007657 TTCCTCGATT
**
52007667 TGTAAAATTACTAAAATACCCTCAGTT
1 TGTAAAATTACTAAAATACCCTCAGCA
*
52007694 TGTAAAATTACT-GAATACCCTC-GACA
1 TGTAAAATTACTAAAATACCCTCAG-CA
*
52007720 TGTAAAATTA-TCAAAGTACCCTC
1 TGTAAAATTACT-AAAATACCCTC
52007743 GAATTACAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
25 2 0.05
26 19 0.46
27 20 0.49
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACTAAAATACCCTCAGCA
Found at i:52007741 original size:53 final size:52
Alignment explanation
Indices: 52007592--52007742 Score: 144
Period size: 53 Copynumber: 2.8 Consensus size: 52
52007582 TTAGTTTACC
* * * *
52007592 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACTG-AATACCCTCGACTTGTAAAATTA-CAAAGTACCCTCAGTTTATA
** * * * *
52007645 AAATTACCCAA-ATTCCTCGATTTGTAAAATTACTAAAATACCCTCAGTTTGTA
1 AAATTACTGAATA-CCCTCGACTTGTAAAATTAC-AAAGTACCCTCAGTTTATA
*
52007698 AAATTACTGAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AAATTACTGAATACCCTCGACTTGTAAAATTA-CAAAGTACCCTC
52007743 GAATTACAAA
Statistics
Matches: 78, Mismatches: 15, Indels: 10
0.76 0.15 0.10
Matches are distributed among these distances:
51 1 0.01
52 5 0.06
53 70 0.90
54 2 0.03
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.29
Consensus pattern (52 bp):
AAATTACTGAATACCCTCGACTTGTAAAATTACAAAGTACCCTCAGTTTATA
Found at i:52007781 original size:81 final size:80
Alignment explanation
Indices: 52007683--52007865 Score: 181
Period size: 81 Copynumber: 2.3 Consensus size: 80
52007673 ATTACTAAAA
* * * *
52007683 TACCCTC-AGTTTGTAAAATTACTGA-ATACCCTCGACATGTAAAATTATCAAAGTACCCTCGAA
1 TACCCTCGA-TTTATAAAATTACT-ATATACCATCGACATATAAAATTACCAAAGTACCCTCGAA
*
52007746 TTACAAAAATTATTATTT
64 TTAC-AAAATTATCATTT
* ** **** *
52007764 TACCCTCGATTTATAAAATTACTATTTTACCATCGATTTATAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTA-TATACCATCGACATATAAAATTACCAAAGTACCCTCGAAT
*
52007829 TACAAAATTATCGTTT
65 TACAAAATTATCATTT
*
52007845 TACCCTCGATTTATAGAATTA
1 TACCCTCGATTTATAAAATTA
52007866 TTGTTTTACC
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 1 0.01
81 51 0.61
82 32 0.38
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.38
Consensus pattern (80 bp):
TACCCTCGATTTATAAAATTACTATATACCATCGACATATAAAATTACCAAAGTACCCTCGAATT
ACAAAATTATCATTT
Found at i:52007789 original size:27 final size:27
Alignment explanation
Indices: 52007736--52007984 Score: 275
Period size: 27 Copynumber: 9.2 Consensus size: 27
52007726 ATTATCAAAG
* * *
52007736 TACCCTCGAATTACAAAAATTATTATTT
1 TACCCTCGATTTAC-AAAATTACTGTTT
* *
52007764 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
52007791 TACCATCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
52007818 TACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* * *
52007845 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
52007872 TACCCTCGATTTATAGAATTGCTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
52007899 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* **
52007926 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * **
52007953 TACCATCGAATTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
52007980 TACCC
1 TACCC
52007985 CTAGGGTGTT
Statistics
Matches: 194, Mismatches: 25, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
27 181 0.93
28 13 0.07
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:52007873 original size:81 final size:81
Alignment explanation
Indices: 52007736--52007984 Score: 329
Period size: 81 Copynumber: 3.1 Consensus size: 81
52007726 ATTATCAAAG
* ** *
52007736 TACCCTCGAATTACAAAAATTATTATTTTACCCTCGATTTATAAAATTACTATTTTACCATCGAT
1 TACCCTCGATTTAC-AAAATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCATCGAT
52007801 TTATAAAATTACCGTTT
65 TTATAAAATTACCGTTT
* * *
52007818 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTATTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCATCGATT
* * *
52007883 TATAGAATTGCTGTTT
66 TATAAAATTACCGTTT
* * * *
52007899 TACCCTTGATTTACAAAATTA-CTGTTTTACCCTCGATTTACAGAATTACCATTTTACCATCGAA
1 TACCCTCGATTTACAAAATTATC-GTTTTACCCTCGATTTATAGAATTACTATTTTACCATCGAT
* *
52007963 TTACAAAATTACCATTT
65 TTATAAAATTACCGTTT
52007980 TACCC
1 TACCC
52007985 CTAGGGTGTT
Statistics
Matches: 144, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 130 0.90
82 13 0.09
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCATCGATT
TATAAAATTACCGTTT
Found at i:52008461 original size:31 final size:32
Alignment explanation
Indices: 52008423--52008501 Score: 110
Period size: 31 Copynumber: 2.5 Consensus size: 32
52008413 TGCATTCACA
*
52008423 TTCTGATTTTGATTCTGTTACCTGATACTG-T
1 TTCTGATTTTGATTCTGTCACCTGATACTGAT
*
52008454 TTCTGATTCTT-ATTCTGTCACCTGATTCTGAT
1 TTCTGATT-TTGATTCTGTCACCTGATACTGAT
52008486 TT-TGATTTTGATTCTG
1 TTCTGATTTTGATTCTG
52008502 ATTCTGATTC
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
30 2 0.05
31 36 0.84
32 5 0.12
ACGTcount: A:0.15, C:0.16, G:0.15, T:0.53
Consensus pattern (32 bp):
TTCTGATTTTGATTCTGTCACCTGATACTGAT
Found at i:52008468 original size:6 final size:6
Alignment explanation
Indices: 52008422--52008512 Score: 69
Period size: 6 Copynumber: 14.8 Consensus size: 6
52008412 TTGCATTCAC
* * * *
52008422 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG TTTCTG ATTCTT ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
52008471 -TCACCTG ATTCTG ATTTTG ATTTTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
52008513 AGTTTTGATA
Statistics
Matches: 67, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
5 3 0.04
6 56 0.84
7 6 0.09
8 2 0.03
ACGTcount: A:0.16, C:0.16, G:0.14, T:0.53
Consensus pattern (6 bp):
ATTCTG
Found at i:52010497 original size:26 final size:27
Alignment explanation
Indices: 52010468--52010590 Score: 119
Period size: 27 Copynumber: 4.6 Consensus size: 27
52010458 TTAGTTTACC
*
52010468 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACCGAAATACCCCCAGTTTGTA
*
52010494 AAATTACC-AAAGTACCCCCAGTTTATA
1 AAATTACCGAAA-TACCCCCAGTTTGTA
* * *
52010521 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACCGAAATACCCCCAG-TTTGTA
* * *
52010548 AAATTGCCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCCCCAGTTTGTA
*
52010575 AAATTACTG-AATACCC
1 AAATTACCGAAATACCC
52010591 TCGACATGTA
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
25 3 0.04
26 24 0.30
27 50 0.62
28 4 0.05
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATTACCGAAATACCCCCAGTTTGTA
Found at i:52010617 original size:53 final size:53
Alignment explanation
Indices: 52010460--52010619 Score: 162
Period size: 53 Copynumber: 3.0 Consensus size: 53
52010450 AGAATACTTT
* * * *
52010460 AGTTTACCAAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCC
1 AGTTTACAAAATTACTG-AATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
* ** * * *
52010513 AGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTGCCGAAA-TACCCTC
1 AGTTTACAAAATTA-CTGAATACCCTCGACTTGTAAAATTACC-AAAGTACCCTC
* * *
52010567 AGTTTGCAAAATTACTGAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTGAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
52010620 GAATTACAAA
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
52 3 0.04
53 46 0.54
54 33 0.39
55 3 0.04
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (53 bp):
AGTTTACAAAATTACTGAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
Found at i:52010668 original size:27 final size:27
Alignment explanation
Indices: 52010613--52010807 Score: 221
Period size: 27 Copynumber: 7.2 Consensus size: 27
52010603 ATTATCAAAG
* *
52010613 TACCCTCGAATTACAAAAATTATTATTT
1 TACCCTCGATTTAC-AAAATTACTATTT
*
52010641 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
52010668 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
52010695 TACACTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
* * * *
52010722 TACCCTCGATTTATAAATTTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
52010749 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
52010776 TACCATCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
52010803 TACCC
1 TACCC
52010808 CTAGGGTGTT
Statistics
Matches: 143, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
27 129 0.90
28 14 0.10
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:52010725 original size:81 final size:80
Alignment explanation
Indices: 52010616--52010807 Score: 251
Period size: 81 Copynumber: 2.4 Consensus size: 80
52010606 ATCAAAGTAC
* *
52010616 CCTCGAATTACAAAAATTATTATTTTACCCTCGATTTACAGAA-TTACTATTTTACCCTCGATTT
1 CCTCGATTTAC-AAAATTATCATTTTACCCTCGATTTACA-AATTTACTATTTTACCCTCGATTT
* *
52010680 ATAAAATTACCGTTTTA
64 ACAAAATTACCATTTTA
* * * *
52010697 CACTCGATTTACAAAATTATCGTTTTACCCTCGATTTATAAATTTATTGTTTTACCCTCGATTTA
1 C-CTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAATTTACTATTTTACCCTCGATTTA
*
52010762 CAGAATTACCATTTTA
65 CAAAATTACCATTTTA
*
52010778 CCATCGATTTACAAAATTACCATTTTACCC
1 CC-TCGATTTACAAAATTATCATTTTACCC
52010808 CTAGGGTGTT
Statistics
Matches: 97, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
80 3 0.03
81 85 0.88
82 9 0.09
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (80 bp):
CCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAATTTACTATTTTACCCTCGATTTAC
AAAATTACCATTTTA
Found at i:52011351 original size:31 final size:31
Alignment explanation
Indices: 52011312--52011384 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
52011302 TTGCATTCAC
* *
52011312 ATTCTGATTTTGATTCTGTTACCTGATAT-TG
1 ATTCTGATTCTGATTCTGTCACCTGAT-TCTG
*
52011343 TTTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
52011374 ATTCTGATTCT
1 ATTCTGATTCT
52011385 AGTTCTAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 1 0.03
31 36 0.97
ACGTcount: A:0.16, C:0.18, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATTCTG
Found at i:52011355 original size:6 final size:6
Alignment explanation
Indices: 52011312--52011384 Score: 53
Period size: 6 Copynumber: 11.8 Consensus size: 6
52011302 TTGCATTCAC
* *
52011312 ATTCTG ATTTTG ATTCTG -TTACCTG ATAT-TG TTTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
*
52011361 -TCACCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCT
52011385 AGTTCTAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
5 4 0.08
6 40 0.75
7 6 0.11
8 2 0.04
9 1 0.02
ACGTcount: A:0.16, C:0.18, G:0.15, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:52013775 original size:26 final size:26
Alignment explanation
Indices: 52013746--52013869 Score: 101
Period size: 27 Copynumber: 4.7 Consensus size: 26
52013736 TTAGTTTACC
*
52013746 AAATTACTGAAATACCGCTAG-TTGTA
1 AAATTACCGAAATACC-CTAGTTTGTA
** *
52013772 AAATTACC-AAAGTACCCCCGGTTTATA
1 AAATTACCGAAA-TA-CCCTAGTTTGTA
* * *
52013799 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCGAAATACCCTAG-TTTGTA
*
52013826 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCCT-AGTTTGTA
*
52013853 AAATTACTG-AATACCCT
1 AAATTACCGAAATACCCT
52013870 CGACATGTAA
Statistics
Matches: 79, Mismatches: 13, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
25 3 0.04
26 22 0.28
27 50 0.63
28 4 0.05
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (26 bp):
AAATTACCGAAATACCCTAGTTTGTA
Found at i:52013844 original size:27 final size:27
Alignment explanation
Indices: 52013770--52014023 Score: 142
Period size: 27 Copynumber: 9.4 Consensus size: 27
52013760 CCGCTAGTTG
* *
52013770 TAAAATTACC-AAAGTACCCCCGGTTTA
1 TAAAATTACCGAAA-TACCCTCGATTTA
* * *
52013797 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTA
*
52013824 TAAAATTACCGAAATACCCTC-AGTTTG
1 TAAAATTACCGAAATACCCTCGA-TTTA
* * ** *
52013851 CAAAATTACTG-AATACCCTCGACATG
1 TAAAATTACCGAAATACCCTCGATTTA
* *
52013877 TAAAATTATC-AAAGTACCCTCGAATTA
1 TAAAATTACCGAAA-TACCCTCGATTTA
* ** **
52013904 CAAAAATTA-TTATTTTACCCTCGATTTA
1 -TAAAATTACCGA-AATACCCTCGATTTA
* * * **
52013932 CAGAATTA-CTATTTTACCCTCGATTTA
1 TAAAATTACCGA-AATACCCTCGATTTA
***
52013959 TAAAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCGAAATACCCTCGATTTA
***
52013986 TAAAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCGAAATACCCTCGATTTA
*
52014013 CAAAATTACCG
1 TAAAATTACCG
52014024 GATAGGGTAC
Statistics
Matches: 189, Mismatches: 29, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
26 21 0.11
27 144 0.76
28 24 0.13
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.33
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATTTA
Found at i:52013895 original size:53 final size:54
Alignment explanation
Indices: 52013768--52013897 Score: 147
Period size: 53 Copynumber: 2.4 Consensus size: 54
52013758 TACCGCTAGT
* * * * **
52013768 TGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAAATATCCTCGATT
1 TGTAAAATTACCAAAGTACCCTCAGTTTACAAAATTACCCAAATACCCTCGACA
* **
52013822 TGTAAAATTACCGAAA-TACCCTCAGTTTGCAAAATTA-CTGAATACCCTCGACA
1 TGTAAAATTACC-AAAGTACCCTCAGTTTACAAAATTACCCAAATACCCTCGACA
*
52013875 TGTAAAATTATCAAAGTACCCTC
1 TGTAAAATTACCAAAGTACCCTC
52013898 GAATTACAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
52 3 0.05
53 29 0.45
54 29 0.45
55 3 0.05
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (54 bp):
TGTAAAATTACCAAAGTACCCTCAGTTTACAAAATTACCCAAATACCCTCGACA
Found at i:52013982 original size:54 final size:54
Alignment explanation
Indices: 52013891--52014023 Score: 176
Period size: 54 Copynumber: 2.4 Consensus size: 54
52013881 ATTATCAAAG
* *** * *
52013891 TACCCTCGAATTACAAAAATTATTATTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTAC-AAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
* * *
52013946 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
52014000 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTACAAAATTACCG
52014024 GATAGGGTAC
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
54 56 0.82
55 12 0.18
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTT
Found at i:52014607 original size:19 final size:20
Alignment explanation
Indices: 52014583--52014621 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
52014573 TAGGTAAGGG
52014583 CATTACCAGA-CAA-ACAGAA
1 CATTA-CAGATCAATACAGAA
52014602 CATTACAGATCAATACAGAA
1 CATTACAGATCAATACAGAA
52014622 TCACAGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 8 0.44
20 6 0.33
ACGTcount: A:0.51, C:0.23, G:0.10, T:0.15
Consensus pattern (20 bp):
CATTACAGATCAATACAGAA
Found at i:52016138 original size:40 final size:41
Alignment explanation
Indices: 52016076--52016334 Score: 331
Period size: 40 Copynumber: 6.5 Consensus size: 41
52016066 AAACCAAGTA
* * * *
52016076 CCTTCGGGATTTA-ACCGGATA-TAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATTAG-TAACTCGCACAAATG
**
52016115 CCTTCGGGACTTAGCCCGGATA-TAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
52016155 CCTTCGGGACTTAGCCCGGAT-TATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATAT-TAGTAACTCGCACAAATG
52016196 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACA-AATG
*
52016236 CCTTCGGGACTTAGCCC-GAAATTAGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACA-AATG
* *
52016276 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
52016316 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
52016335 TTATCATCCG
Statistics
Matches: 201, Mismatches: 10, Indels: 17
0.88 0.04 0.07
Matches are distributed among these distances:
39 16 0.08
40 145 0.72
41 40 0.20
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
Found at i:52024259 original size:40 final size:40
Alignment explanation
Indices: 52024223--52024454 Score: 337
Period size: 40 Copynumber: 5.8 Consensus size: 40
52024213 GGATATAGCT
* *
52024223 ACTCGCTCGAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
52024263 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
52024303 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
52024343 ACTCGCA-ACAATGCCTTTGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACA-AATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
52024383 ACTCGCA-ACAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACA-AATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
52024423 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
52024455 TTATCATCCG
Statistics
Matches: 179, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 1 0.01
40 175 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:52024349 original size:80 final size:80
Alignment explanation
Indices: 52024197--52024454 Score: 348
Period size: 80 Copynumber: 3.2 Consensus size: 80
52024187 AAACCAAGTA
* * * *
52024197 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACTTAGCCCGG-ATAT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-T
**
52024259 AGTAGTTCGCACAAATG
64 AGTAACTCGCACAAATG
52024276 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
52024341 TAACTCGCA-ACAATG
66 TAACTCGCACA-AATG
*
52024356 CCTTTGGGACTTAGCCCGGA-ATTAGTAACTCGCA-ACAATGCCTTCGGGACTTAGCCCGGAATT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATGCCTTCGGGACTTAGCCCGGAATT
* *
52024419 AGTCACTAGCACAAATG
64 AGTAACTCGCACAAATG
52024436 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
52024455 TTATCATCCG
Statistics
Matches: 162, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
79 16 0.10
80 143 0.88
81 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAACTCGCACAAATG
Found at i:52027405 original size:42 final size:43
Alignment explanation
Indices: 52027326--52027419 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
52027316 TCCTGGACGT
* * ** *
52027326 GGTCTTACATGTAATTCAGTTTCGATGCCTTTATCCCAGATAG
1 GGTCTTACATGTAATTCAGATACGATGCCGATATCCCAGACAG
* * *
52027369 GGTCTTACATG-AATTCAGATACGATGTCGATGTCCCAGACAT
1 GGTCTTACATGTAATTCAGATACGATGCCGATATCCCAGACAG
52027411 GGTCTTACA
1 GGTCTTACA
52027420 CATAAATCTC
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 32 0.74
43 11 0.26
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (43 bp):
GGTCTTACATGTAATTCAGATACGATGCCGATATCCCAGACAG
Found at i:52029610 original size:14 final size:14
Alignment explanation
Indices: 52029591--52029618 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
52029581 AAAGGTTGTT
52029591 TTGCATATGTTTGA
1 TTGCATATGTTTGA
52029605 TTGCATATGTTTGA
1 TTGCATATGTTTGA
52029619 ATGACTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (14 bp):
TTGCATATGTTTGA
Found at i:52029793 original size:42 final size:42
Alignment explanation
Indices: 52029734--52029875 Score: 221
Period size: 42 Copynumber: 3.4 Consensus size: 42
52029724 GGGTGTTACA
*
52029734 CTCTAAATGTAATGAAAAGTAAATGGACCTCCACACCTAGGC
1 CTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTAGGC
* * *
52029776 CTCTAAATGCGATGAAAAGTAAATGGACCTCCACCCCTGGGC
1 CTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTAGGC
* *
52029818 CTCTAACTGCAATCAAAAGTAAATGGACCTCCACACCTAGGC
1 CTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTAGGC
*
52029860 CTTTAAATGCAATGAA
1 CTCTAAATGCAATGAA
52029876 TGCTTTCCTT
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (42 bp):
CTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTAGGC
Found at i:52031412 original size:53 final size:53
Alignment explanation
Indices: 52031348--52031454 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 53
52031338 CTTTCCTTTT
* * * * *
52031348 TAAACTTACCATTTCCATGTCTTAACATGGCCTTACATGGTATCCTTGCCTTA
1 TAAACTCACCATTGCCATGCCTTAACATGGCCTTACAAGGGATCCTTGCCTTA
* * *
52031401 TAAACTCACCATTGCCATGCCTTAGCATGGTCTTACAAGGGATCTTTGCCTTA
1 TAAACTCACCATTGCCATGCCTTAACATGGCCTTACAAGGGATCCTTGCCTTA
52031454 T
1 T
52031455 CGTAGTTTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (53 bp):
TAAACTCACCATTGCCATGCCTTAACATGGCCTTACAAGGGATCCTTGCCTTA
Found at i:52039126 original size:39 final size:38
Alignment explanation
Indices: 52039083--52039181 Score: 99
Period size: 38 Copynumber: 2.6 Consensus size: 38
52039073 TAGGTTTCAA
* *
52039083 AACCCAAATCCAGTCACCAGCACAAAACCTACGGGATTT
1 AACCCAAATACAAT-ACCAGCACAAAACCTACGGGATTT
** * * *
52039122 AACCCGGATATAATACCAGCACGAAGCCTACGGGATTT
1 AACCCAAATACAATACCAGCACAAAACCTACGGGATTT
** *
52039160 AACCCGGATATAATACCAGCAC
1 AACCCAAATACAATACCAGCAC
52039182 GAAGCCTGCG
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
38 44 0.83
39 9 0.17
ACGTcount: A:0.37, C:0.30, G:0.16, T:0.16
Consensus pattern (38 bp):
AACCCAAATACAATACCAGCACAAAACCTACGGGATTT
Found at i:52039182 original size:38 final size:38
Alignment explanation
Indices: 52039098--52039188 Score: 164
Period size: 38 Copynumber: 2.4 Consensus size: 38
52039088 AAATCCAGTC
* *
52039098 ACCAGCACAAAACCTACGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTACGGGATTTAACCCGGATATAAT
52039136 ACCAGCACGAAGCCTACGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTACGGGATTTAACCCGGATATAAT
52039174 ACCAGCACGAAGCCT
1 ACCAGCACGAAGCCT
52039189 GCGGACCTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.36, C:0.29, G:0.19, T:0.16
Consensus pattern (38 bp):
ACCAGCACGAAGCCTACGGGATTTAACCCGGATATAAT
Found at i:52055361 original size:33 final size:34
Alignment explanation
Indices: 52055324--52055388 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
52055314 GTCTCAATTA
* **
52055324 GGGCCTTAGCCC-TTTCAGTAGTAGTATCAGTGT
1 GGGCCTTAGCCCAATTCAGTAACAGTATCAGTGT
52055357 GGGCCTTAGCCCAATTCAGTAACAGTATCAGT
1 GGGCCTTAGCCCAATTCAGTAACAGTATCAGT
52055389 ATAAAAGGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 12 0.43
34 16 0.57
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (34 bp):
GGGCCTTAGCCCAATTCAGTAACAGTATCAGTGT
Found at i:52055969 original size:17 final size:17
Alignment explanation
Indices: 52055947--52055995 Score: 80
Period size: 17 Copynumber: 2.8 Consensus size: 17
52055937 TACCCGTATA
52055947 GGGCCCACAAGCCCGTG
1 GGGCCCACAAGCCCGTG
*
52055964 GGGCCCACAAGCCTGTG
1 GGGCCCACAAGCCCGTG
52055981 GGGCCCACACAGCCC
1 GGGCCCACA-AGCCC
52055996 ATTTTGTCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 25 0.86
18 4 0.14
ACGTcount: A:0.18, C:0.43, G:0.33, T:0.06
Consensus pattern (17 bp):
GGGCCCACAAGCCCGTG
Found at i:52056668 original size:9 final size:9
Alignment explanation
Indices: 52056654--52056679 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
52056644 AGATCGATAG
52056654 AGAAGAAGT
1 AGAAGAAGT
52056663 AGAAGAAGT
1 AGAAGAAGT
52056672 AGAAGAAG
1 AGAAGAAG
52056680 GAGTCAGCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.35, T:0.08
Consensus pattern (9 bp):
AGAAGAAGT
Found at i:52063554 original size:39 final size:41
Alignment explanation
Indices: 52063498--52063588 Score: 100
Period size: 39 Copynumber: 2.3 Consensus size: 41
52063488 TGATATAATG
* * *
52063498 AATA-ATAAATAATATAAT-AGATAACATATAATATACATAA
1 AATATATAAATAATATAATAAG-TAACATAGAATAAAAATAA
*
52063538 AATATATAAA-AA-ATAATAAGTAATATAGAATAAAAATAA
1 AATATATAAATAATATAATAAGTAACATAGAATAAAAATAA
52063577 AATATAATAAAT
1 AATAT-ATAAAT
52063589 TTTATATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
39 25 0.58
40 13 0.30
41 5 0.12
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (41 bp):
AATATATAAATAATATAATAAGTAACATAGAATAAAAATAA
Found at i:52063600 original size:30 final size:31
Alignment explanation
Indices: 52063541--52063607 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 31
52063531 TACATAAAAT
*
52063541 ATATAAAAAATAATAAGTAATATAGAATAAA
1 ATATAAAAAATAATAAATAATATAGAATAAA
* ** *
52063572 A-ATAAAATATAATAAATTTTATATAATAAA
1 ATATAAAAAATAATAAATAATATAGAATAAA
52063602 ATATAA
1 ATATAA
52063608 GTTGAATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (31 bp):
ATATAAAAAATAATAAATAATATAGAATAAA
Found at i:52063735 original size:13 final size:13
Alignment explanation
Indices: 52063688--52063764 Score: 52
Period size: 13 Copynumber: 5.6 Consensus size: 13
52063678 ATATATATAA
52063688 ATAATTAATAAATAT
1 ATAA-TAAT-AATAT
*
52063703 ATAATACAAGTAAAAT
1 ATAAT--AA-TAATAT
52063719 ATAATAATAATAT
1 ATAATAATAATAT
*
52063732 ATAAAAATAATA-
1 ATAATAATAATAT
52063744 ATGGAA-AATAATA-
1 AT--AATAATAATAT
52063757 ATAATAAT
1 ATAATAAT
52063765 TTGTGAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
11 2 0.04
12 5 0.09
13 25 0.47
14 5 0.09
15 4 0.08
16 11 0.21
17 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (13 bp):
ATAATAATAATAT
Found at i:52063758 original size:35 final size:36
Alignment explanation
Indices: 52063714--52063818 Score: 117
Period size: 38 Copynumber: 2.9 Consensus size: 36
52063704 TAATACAAGT
*
52063714 AAAAT-ATAATAATAATATAT-AAAAATAATA-ATGG
1 AAAATAATAATAATAATATATGAAAAATAATATA-CG
* *
52063748 AAAATAATAATAATAATTTGTGAAAAAATAATATACG
1 AAAATAATAATAATAATATATG-AAAAATAATATACG
52063785 ATAAATAATAATAATATATATATGATAAAATAAT
1 A-AAATAATAATAATA-ATATATGA-AAAATAAT
52063819 CTTATAGTGT
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
34 5 0.08
35 13 0.22
37 12 0.20
38 16 0.27
39 13 0.22
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.31
Consensus pattern (36 bp):
AAAATAATAATAATAATATATGAAAAATAATATACG
Found at i:52065186 original size:42 final size:42
Alignment explanation
Indices: 52065127--52065207 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
52065117 GCAGAAACCT
52065127 TAGGGTTTCTTGCCTTGGTGTAATAAATTGGGCCAGTTACCC
1 TAGGGTTTCTTGCCTTGGTGTAATAAATTGGGCCAGTTACCC
52065169 TAGGGTTTCTTGCCTTGGTGTAATAAATTGGGCCAGTTA
1 TAGGGTTTCTTGCCTTGGTGTAATAAATTGGGCCAGTTA
52065208 GGCCACTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.37
Consensus pattern (42 bp):
TAGGGTTTCTTGCCTTGGTGTAATAAATTGGGCCAGTTACCC
Found at i:52065964 original size:206 final size:206
Alignment explanation
Indices: 52065592--52066275 Score: 969
Period size: 206 Copynumber: 3.3 Consensus size: 206
52065582 TCACAAAGAC
* ** * * * *
52065592 GCCAAATCATCTTGGATCTTGCTTCAGTC-TAATTATC-TGAAGGCCAGATCTGCTATTTCTTCG
1 GCCAAATCATCTTAGAT-TTGCTTCA-TCGTAAACA-CGTGAAAGCCAAATCAGCTATGTCTTCG
* *
52065655 ATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCATCTGA
63 ATTTGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCATCTGA
*
52065720 AGGTCAGATCTGCTATGTGTTTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCGATTTGCTCTCT
128 AGGTCAGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCGATTTGCTCTCT
52065785 GCAAATACAGAGAT
193 GCAAATACAGAGAT
* *
52065799 GCCAAATCGTCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCGAATCAGCTATGTCTTCGATT
1 GCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATT
* * *
52065864 TGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATGTTACTTCAGTCTAATCATCTGATGG
66 TGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCATCTGAAGG
* * * *
52065929 CCAAATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCGATTTGCTCTCAGCC
131 TCAGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGCA
52065994 AATACAGAGAT
196 AATACAGAGAT
* * *
52066005 GCCAAATTATCTTAGATTTGCTTCATCGTAAACACGTGAAATCCAAATCAACTATGTCTTCGATT
1 GCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATT
* *
52066070 TGTTCCTTATAAGCACAATGATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCACCTGAAGG
66 TGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCATCTGAAGG
* * * * * * * * *
52066135 TCAGATCTGCTATGTATCTACTCTCCATTGAATTGGAGATGCCAAACTTTGATTTGTTCTCTG-A
131 TCAGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGCA
*
52066199 CAATACAGAGAC
196 -AATACAGAGAT
** *
52066211 AACAAATCATCTTAAATTTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGAT
1 GCCAAATCATCTTAGA-TTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGAT
52066276 CTACTCCCCG
Statistics
Matches: 424, Mismatches: 49, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
205 3 0.01
206 360 0.85
207 61 0.14
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (206 bp):
GCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATT
TGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTCTAATCATCTGAAGG
TCAGATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCGATTTGCTCTCTGCA
AATACAGAGAT
Found at i:52074355 original size:14 final size:14
Alignment explanation
Indices: 52074336--52074362 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
52074326 CTGGTTCAAC
52074336 TTTATTTAGAAAAT
1 TTTATTTAGAAAAT
52074350 TTTATTTAGAAAA
1 TTTATTTAGAAAA
52074363 AGAATATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (14 bp):
TTTATTTAGAAAAT
Found at i:52078025 original size:30 final size:31
Alignment explanation
Indices: 52077966--52078032 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 31
52077956 TTCATAACAT
*
52077966 ATATAAAAAATAATAAGTAATATAGAATAAA
1 ATATAAAAAATAATAAATAATATAGAATAAA
* ** *
52077997 A-ATAAAATATAATAAATGTTATATAATAAA
1 ATATAAAAAATAATAAATAATATAGAATAAA
52078027 ATATAA
1 ATATAA
52078033 GTTGAGTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (31 bp):
ATATAAAAAATAATAAATAATATAGAATAAA
Found at i:52078164 original size:35 final size:35
Alignment explanation
Indices: 52078125--52078240 Score: 92
Period size: 35 Copynumber: 3.1 Consensus size: 35
52078115 TAATAAATAT
52078125 ATAATACAAGTAAAAT-ATAATAATAATATAGAAAA
1 ATAATACAAG-AAAATAATAATAATAATATAGAAAA
** * *
52078160 ATAATGA-TGGAAAATAATAATAATAATTTGTGAAAAA
1 ATAAT-ACAAGAAAATAATAATAATAATAT-AG-AAAA
* *
52078197 ATAATATACGATAAATAATAATAATATATATATGATAAA
1 ATAATACAAGA-AAATAATAATAATA-ATATA-GA-AAA
52078236 ATAAT
1 ATAAT
52078241 CTTATAGTGT
Statistics
Matches: 64, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
34 5 0.08
35 18 0.28
36 3 0.05
37 11 0.17
38 15 0.23
39 12 0.19
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (35 bp):
ATAATACAAGAAAATAATAATAATAATATAGAAAA
Found at i:52078186 original size:22 final size:21
Alignment explanation
Indices: 52078159--52078202 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
52078149 AATATAGAAA
52078159 AATAATGATG-GAAAATAATAAT
1 AATAAT-ATGTGAAAA-AATAAT
*
52078181 AATAATTTGTGAAAAAATAAT
1 AATAATATGTGAAAAAATAAT
52078202 A
1 A
52078203 TACGATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (21 bp):
AATAATATGTGAAAAAATAAT
Found at i:52081702 original size:232 final size:232
Alignment explanation
Indices: 52081289--52081752 Score: 883
Period size: 232 Copynumber: 2.0 Consensus size: 232
52081279 AAATATCATA
* **
52081289 ATGAGAGGAGAAATTAGCTTTGGTAAACCGACTAATTTAGACACGATGTTGAAAGAATGTGGTAA
1 ATGAGAAGAGAAATTAAATTTGGTAAACCGACTAATTTAGACACGATGTTGAAAGAATGTGGTAA
52081354 CCAGAATTCTTTTGAACTTATTTTCTTCAGTGAAAGAAATAATACGAGATTAGTGATGACAAAAA
66 CCAGAATTCTTTTGAACTTATTTTCTTCAGTGAAAGAAATAATACGAGATTAGTGATGACAAAAA
52081419 TAATCGAAGGAATAATATTTGAAATGTATGACATTTGAGTGTAACAGCTTACAGTGAGTGGATTA
131 TAATCGAAGGAATAATATTTGAAATGTATGACATTTGAGTGTAACAGCTTACAGTGAGTGGATTA
52081484 TGACTGTCTCTCTTGAGGTACCCTAAGGATTTATTTG
196 TGACTGTCTCTCTTGAGGTACCCTAAGGATTTATTTG
*
52081521 ATGAGAAGAGAAATTAAATTTGGTAAACCGACTGATTTAGACACGATGTTGAAAGAATGTGGTAA
1 ATGAGAAGAGAAATTAAATTTGGTAAACCGACTAATTTAGACACGATGTTGAAAGAATGTGGTAA
52081586 CCAGAATTCTTTTGAACTTATTTTCTTCAGTGAAAGAAATAATACGAGATTAGTGATGACAAAAA
66 CCAGAATTCTTTTGAACTTATTTTCTTCAGTGAAAGAAATAATACGAGATTAGTGATGACAAAAA
*
52081651 TAATTGAAGGAATAATATTTGAAATGTATGACATTTGAGTGTAACAGCTTACAGTGAGTGGATTA
131 TAATCGAAGGAATAATATTTGAAATGTATGACATTTGAGTGTAACAGCTTACAGTGAGTGGATTA
52081716 TGACTGTCTCTCTTGAGGTACCCTAAGGATTTATTTG
196 TGACTGTCTCTCTTGAGGTACCCTAAGGATTTATTTG
52081753 TTCTAGGAAG
Statistics
Matches: 227, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
232 227 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (232 bp):
ATGAGAAGAGAAATTAAATTTGGTAAACCGACTAATTTAGACACGATGTTGAAAGAATGTGGTAA
CCAGAATTCTTTTGAACTTATTTTCTTCAGTGAAAGAAATAATACGAGATTAGTGATGACAAAAA
TAATCGAAGGAATAATATTTGAAATGTATGACATTTGAGTGTAACAGCTTACAGTGAGTGGATTA
TGACTGTCTCTCTTGAGGTACCCTAAGGATTTATTTG
Found at i:52099914 original size:39 final size:40
Alignment explanation
Indices: 52099846--52099924 Score: 92
Period size: 39 Copynumber: 2.0 Consensus size: 40
52099836 ACCTCGTGAA
* *
52099846 AAAACATTTATTTATTATTTAATATTTCTA-ATTTTTATT
1 AAAACATTTATTTATTATTTAATAATTCTAGAATTTTATT
*
52099885 AAAACTATTT-TTTATT-TTTATTAGATTCTAGAATTTTATT
1 AAAAC-ATTTATTTATTATTTAATA-ATTCTAGAATTTTATT
52099925 TTTAATTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
38 6 0.18
39 16 0.47
40 12 0.35
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (40 bp):
AAAACATTTATTTATTATTTAATAATTCTAGAATTTTATT
Found at i:52103387 original size:18 final size:19
Alignment explanation
Indices: 52103347--52103387 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
52103337 GTGAAAATGG
* *
52103347 GCCCATGTGGGCCCACACA
1 GCCCATGTGGGACCACAAA
52103366 -CCCATG-GGGACCACAAA
1 GCCCATGTGGGACCACAAA
52103383 GCCCA
1 GCCCA
52103388 AAAATGGCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.27, C:0.41, G:0.24, T:0.07
Consensus pattern (19 bp):
GCCCATGTGGGACCACAAA
Found at i:52106623 original size:48 final size:49
Alignment explanation
Indices: 52106565--52106768 Score: 140
Period size: 48 Copynumber: 4.2 Consensus size: 49
52106555 TAAAGTACCA
* * *
52106565 ATGCCATGTCCCCA-ACAT-GATTTTACA-TGAATCCACAAATCATCGGCG
1 ATGCCATGTCCCCAGAAATAG-TTTTACACT-AATACACAAATCATCGCCG
* *
52106613 ATGCCATGT-CCCAGAAATAGTTTTACACTAGTACACATATCATCGCCG
1 ATGCCATGTCCCCAGAAATAGTTTTACACTAATACACAAATCATCGCCG
* * **
52106661 ATGCCATGT-CCCAGACATAGTCTTACAC--AGGCACATATATCATCGCCG
1 ATGCCATGTCCCCAGAAATAGTTTTACACTAATACACA-A-ATCATCGCCG
* * * * ** *
52106709 ATGCTATGT-CCCAGACATGGTCTTACAC--AGGCACATATTTCATCGCCG
1 ATGCCATGTCCCCAGAAATAGTTTTACACTAATACACA-A-ATCATCGCCG
52106757 ATGCCATGTCCC
1 ATGCCATGTCCC
52106769 AGACATGGTC
Statistics
Matches: 135, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
46 4 0.03
47 4 0.03
48 123 0.91
49 4 0.03
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.25
Consensus pattern (49 bp):
ATGCCATGTCCCCAGAAATAGTTTTACACTAATACACAAATCATCGCCG
Found at i:52106769 original size:48 final size:47
Alignment explanation
Indices: 52106604--52106792 Score: 272
Period size: 48 Copynumber: 4.0 Consensus size: 47
52106594 AATCCACAAA
* * * *
52106604 TCATCGGCGATGCCATGTCCCAGAAATAGTTTTACACTAGTACACATA-
1 TCATCGCCGATGCCATGTCCCAGACATAGTCTTACAC-AG-GCACATAT
52106652 TCATCGCCGATGCCATGTCCCAGACATAGTCTTACACAGGCACATAT
1 TCATCGCCGATGCCATGTCCCAGACATAGTCTTACACAGGCACATAT
* *
52106699 ATCATCGCCGATGCTATGTCCCAGACATGGTCTTACACAGGCACATATT
1 -TCATCGCCGATGCCATGTCCCAGACATAGTCTTACACAGGCACATA-T
*
52106748 TCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
1 TCATCGCCGATGCCATGTCCCAGACATAGTCTTACACAGGCACAT
52106793 TTAGCATGGT
Statistics
Matches: 131, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
46 6 0.05
47 2 0.02
48 122 0.93
49 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (47 bp):
TCATCGCCGATGCCATGTCCCAGACATAGTCTTACACAGGCACATAT
Found at i:52108298 original size:21 final size:21
Alignment explanation
Indices: 52108272--52108314 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
52108262 TCAAACCTCG
52108272 TACAGCAATCATAACTTGCCT
1 TACAGCAATCATAACTTGCCT
52108293 TACAGCAATCATAACTTGCCT
1 TACAGCAATCATAACTTGCCT
52108314 T
1 T
52108315 TCACCATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (21 bp):
TACAGCAATCATAACTTGCCT
Found at i:52109567 original size:30 final size:30
Alignment explanation
Indices: 52109512--52109597 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
52109502 TACTTATTAA
52109512 CATATTCATACCCTGT-ATC-ATTCACATTTG
1 CATA-TCATACCCTGTAATCGA-TCACATTTG
**
52109542 CATATCATATTCTGTAATCGATCACATTTG
1 CATATCATACCCTGTAATCGATCACATTTG
* *
52109572 TATTTCATACCCTGTAATCGATCACA
1 CATATCATACCCTGTAATCGATCACA
52109598 GTTCAATCAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.19
30 38 0.79
31 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (30 bp):
CATATCATACCCTGTAATCGATCACATTTG
Found at i:52109693 original size:23 final size:22
Alignment explanation
Indices: 52109640--52109694 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
52109630 TTCATTTCAA
*
52109640 TTCAATCCAATTCATATATAAT
1 TTCAATTCAATTCATATATAAT
* * *
52109662 TTTACATTCAATTCATAATCTTAT
1 TTCA-ATTCAATTCAT-ATATAAT
52109686 TTCAATTCA
1 TTCAATTCA
52109695 TCATCAACCC
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 3 0.12
23 15 0.58
24 8 0.31
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45
Consensus pattern (22 bp):
TTCAATTCAATTCATATATAAT
Found at i:52115356 original size:14 final size:13
Alignment explanation
Indices: 52115337--52115372 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
52115327 TCTTAAAATA
52115337 AAATAAAAGTAAT
1 AAATAAAAGTAAT
52115350 AACATAAAA-TAAT
1 AA-ATAAAAGTAAT
52115363 AAATAAAAGT
1 AAATAAAAGT
52115373 TTTTAAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 6 0.29
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.22
Consensus pattern (13 bp):
AAATAAAAGTAAT
Found at i:52125769 original size:24 final size:24
Alignment explanation
Indices: 52125742--52125793 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
52125732 TTTCTAGAAG
*
52125742 ATTTAGTACTTATTAGGATAATAT
1 ATTTAGCACTTATTAGGATAATAT
* * *
52125766 ATTTAGCATTTATTAGTATAATTT
1 ATTTAGCACTTATTAGGATAATAT
52125790 ATTT
1 ATTT
52125794 GACCTACGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (24 bp):
ATTTAGCACTTATTAGGATAATAT
Found at i:52127891 original size:13 final size:13
Alignment explanation
Indices: 52127873--52127916 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
52127863 AAGATTCAAT
52127873 ATTTATTAGTATA
1 ATTTATTAGTATA
**
52127886 ATTTATT--TAGC
1 ATTTATTAGTATA
52127897 ATTTATTAGTATA
1 ATTTATTAGTATA
52127910 ATTTATT
1 ATTTATT
52127917 TGACCTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 9 0.36
13 16 0.64
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (13 bp):
ATTTATTAGTATA
Found at i:52130873 original size:48 final size:48
Alignment explanation
Indices: 52130790--52130978 Score: 281
Period size: 48 Copynumber: 3.9 Consensus size: 48
52130780 ACTCGGGAGT
* *
52130790 CTCGCACCCTAAGTGCCAATATCATGTCCCGAAGCCAAATCAATG-AA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
* * * *
52130837 GCTCACACCCGAAGTGCCGATATCATAGCCCAAAGCCAAATCAATGTAA
1 -CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
** *
52130886 CTCGCACCTAAAGTGCCAATATCATGGCCTGAAGCCAAATCAATGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
52130934 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATG
52130979 AATTCCCTAA
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
48 122 0.98
49 2 0.02
ACGTcount: A:0.34, C:0.31, G:0.17, T:0.18
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
Done.