Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 176 of 253
Found at i:57208242 original size:14 final size:14
Alignment explanation
Indices: 57208215--57208255 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
57208205 TATTTGATAA
57208215 ACTAAAAAATTAAAT
1 ACTAAAAAA-TAAAT
*
57208230 ATTAAAAAATAAAT
1 ACTAAAAAATAAAT
*
57208244 ACTGAAAAATAA
1 ACTAAAAAATAA
57208256 TTGTTGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 15 0.65
15 8 0.35
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.24
Consensus pattern (14 bp):
ACTAAAAAATAAAT
Found at i:57208359 original size:19 final size:19
Alignment explanation
Indices: 57208337--57208374 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
57208327 GTATATCATG
57208337 AAAAATTAAATATTGAATT
1 AAAAATTAAATATTGAATT
57208356 AAAAATTAAATATTGAATT
1 AAAAATTAAATATTGAATT
57208375 TAATTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
AAAAATTAAATATTGAATT
Found at i:57215170 original size:23 final size:20
Alignment explanation
Indices: 57215122--57215163 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
57215112 GACTTAATGG
57215122 AAGCCTTGATAGGGGTAGAT
1 AAGCCTTGATAGGGGTAGAT
*
57215142 AA-CCTTGCTAGGGGTAGAT
1 AAGCCTTGATAGGGGTAGAT
57215161 AAG
1 AAG
57215164 ATGCCTTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.31, C:0.12, G:0.33, T:0.24
Consensus pattern (20 bp):
AAGCCTTGATAGGGGTAGAT
Found at i:57220129 original size:12 final size:12
Alignment explanation
Indices: 57220083--57220147 Score: 58
Period size: 13 Copynumber: 5.1 Consensus size: 12
57220073 TTTAAATCAA
57220083 ACTTTTTAAAAAT
1 ACTTTTT-AAAAT
* *
57220096 ACCTTTCAAAAT
1 ACTTTTTAAAAT
57220108 CACATTTTTAAAAT
1 -AC-TTTTTAAAAT
*
57220122 ATTTTTTAAAAAT
1 ACTTTTT-AAAAT
*
57220135 ACTTTTAAAAAT
1 ACTTTTTAAAAT
57220147 A
1 A
57220148 ATACTAAACT
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
12 16 0.38
13 18 0.43
14 8 0.19
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (12 bp):
ACTTTTTAAAAT
Found at i:57223078 original size:40 final size:40
Alignment explanation
Indices: 57223013--57223143 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
57223003 AGATAAATCG
* *
57223013 AACACACCAGATAGAAGCTCGTAAGAGCTAATCCAATTGA
1 AACACACCAGAAAGAAGCTCATAAGAGCTAATCCAATTGA
* * *
57223053 AACACACCGGAAAGACGCTCATAAGAGCTAATCCACTTGA
1 AACACACCAGAAAGAAGCTCATAAGAGCTAATCCAATTGA
* * * *
57223093 AACACGCCAGACAGAAGCACATAAGAGCTAATCCAACTGA
1 AACACACCAGAAAGAAGCTCATAAGAGCTAATCCAATTGA
*
57223133 AACACGCCAGA
1 AACACACCAGA
57223144 CAAAGAGTGT
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.43, C:0.27, G:0.18, T:0.13
Consensus pattern (40 bp):
AACACACCAGAAAGAAGCTCATAAGAGCTAATCCAATTGA
Found at i:57226557 original size:96 final size:96
Alignment explanation
Indices: 57226388--57226585 Score: 360
Period size: 96 Copynumber: 2.1 Consensus size: 96
57226378 AGTTCCTATG
57226388 TGATGATGAGCTTAAGAGATCTATATAACTGTGATAAAATTAGGAACTTTTTAGGGGATATTAGG
1 TGAT-ATGAGCTTAAGAGATCTATATAACTGTGATAAAATTAGGAACTTTTTAGGGGATATTAGG
*
57226453 AATAATAATTACTCATAAAGGAAAACCGAAAT
65 AATAATAATTACTCATAAAGGAAAACCAAAAT
*
57226485 TGATATGAGCTTAAGAGCTCTATATAACTGTGATAAAATTAGGAACTTTTTAGGGGATATTAGGA
1 TGATATGAGCTTAAGAGATCTATATAACTGTGATAAAATTAGGAACTTTTTAGGGGATATTAGGA
*
57226550 ATAATAATTACTCATAAAGGAAAATCAAAAT
66 ATAATAATTACTCATAAAGGAAAACCAAAAT
57226581 TGATA
1 TGATA
57226586 ATTAAAAATA
Statistics
Matches: 98, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
96 94 0.96
97 4 0.04
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (96 bp):
TGATATGAGCTTAAGAGATCTATATAACTGTGATAAAATTAGGAACTTTTTAGGGGATATTAGGA
ATAATAATTACTCATAAAGGAAAACCAAAAT
Found at i:57231742 original size:61 final size:61
Alignment explanation
Indices: 57231658--57231779 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
57231648 GCCAAGAGAA
*
57231658 GGAAAAACTAAGTTAATAAATAATAATAAAATTAAATTAAATTTCAAGAAAAATAAATGGC
1 GGAAAAACTAAGTTAATAAATAATAATAAAATTAAATTAAATTGCAAGAAAAATAAATGGC
57231719 GGAAAAACTAAGTTAATAAATAATAATAAAATTAAATTAAATTGCAAGAAAAATAAATGGC
1 GGAAAAACTAAGTTAATAAATAATAATAAAATTAAATTAAATTGCAAGAAAAATAAATGGC
57231780 TAAAGTAATA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.59, C:0.05, G:0.11, T:0.25
Consensus pattern (61 bp):
GGAAAAACTAAGTTAATAAATAATAATAAAATTAAATTAAATTGCAAGAAAAATAAATGGC
Found at i:57253519 original size:43 final size:43
Alignment explanation
Indices: 57253453--57253537 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
57253443 AAATGGTACA
*
57253453 ATGCCAACGTCCCAGACGTGGTCTTACATGTAACCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
*
57253496 ATGCC-ACTGTCCCAGACAG-GGTCTTACTTGTAAACACATATC
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAAACACATATC
57253538 AGAATCACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 2 0.05
43 35 0.92
44 1 0.03
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:57255862 original size:50 final size:49
Alignment explanation
Indices: 57255784--57256071 Score: 319
Period size: 50 Copynumber: 5.8 Consensus size: 49
57255774 TGTGATCATA
* * *
57255784 TGTGTAGTACTAAGTGCAGGCTATTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-GGTCACG
* * *
57255834 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTC-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCACG
* * * * * *
57255882 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAGT-TGGTCACG
** * *
57255933 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGT-TGGTCACG
* *
57255983 TGCGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTTGGTCACG
* * * *
57256032 TGTGTAGTACTAAGTGCAGGCTGCTATGCGTACCAAATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
57256072 CTTCGGCTAC
Statistics
Matches: 200, Mismatches: 33, Indels: 11
0.82 0.14 0.05
Matches are distributed among these distances:
48 35 0.17
49 46 0.23
50 86 0.43
51 33 0.17
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCACG
Found at i:57255955 original size:99 final size:99
Alignment explanation
Indices: 57255733--57256053 Score: 317
Period size: 99 Copynumber: 3.2 Consensus size: 99
57255723 TGAGGTCGCA
* * * * * * * * * *
57255733 TGTGTAGTACTAAGTTCAAGCTACTATGCGTACCCGAAAACTGTGATCATATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TGAGGTCACATGCGTAGTACTAAG
* * * *
57255798 TGCAGGCTATTACGTGTATCAGA-TGGTTAGGTCACG
65 TGCAGGCTACTACGTGTACCAAACT-GTT-GATCACG
* * * *
57255834 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT-TGGTC-CATGTGTAGTACTATGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATGAGGTCACATGCGTAGTACTAAGT
*
57255897 GCAGGCTACTATGTGTACCCGAAAACTG-TGATCACG
66 GCAGGCTACTACGTGTA-CC--AAACTGTTGATCACG
** ** *
57255933 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGTCACGTGCGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATGAGGTCACATGCGTAGTACTAAGT
* * *
57255998 GCAGGCTACTACGTGTACCAGACTGTTGGTCACA
66 GCAGGCTACTACGTGTACCAAACTGTTGATCACG
57256032 TGTGTAGTACTAAGTGCAGGCT
1 TGTGTAGTACTAAGTGCAGGCT
57256054 GCTATGCGTA
Statistics
Matches: 186, Mismatches: 27, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
98 35 0.19
99 75 0.40
100 8 0.04
101 67 0.36
102 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATGAGGTCACATGCGTAGTACTAAGT
GCAGGCTACTACGTGTACCAAACTGTTGATCACG
Found at i:57256001 original size:149 final size:150
Alignment explanation
Indices: 57255726--57256065 Score: 531
Period size: 149 Copynumber: 2.3 Consensus size: 150
57255716 TCTATTGTGA
* * * *
57255726 GGTCGCATGTGTAGTACTAAGTTCAAGCTACTATGCGTACCCGAAAACTGTGATCATATGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACATGTGTAG
* * *
57255791 TACTAAGTGCAGGCTATTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCT
66 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACTAAGTGCAGGCT
*
57255856 ACTACGTGTACCGGA-TAATT
131 ACTACGTGTACCAGACT-ATT
* * *
57255876 GGTC-CATGTGTAGTACTATGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACATGTGTAG
*
57255940 TACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGTCACGTGCGTAGTACTAAGTGCAGGCT
66 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACTAAGTGCAGGCT
*
57256005 ACTACGTGTACCAGACTGTT
131 ACTACGTGTACCAGACTATT
*
57256025 GGTCACATGTGTAGTACTAAGTGCAGGCTGCTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
57256066 AAATAGCTTC
Statistics
Matches: 173, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
149 135 0.78
150 38 0.22
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (150 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACATGTGTAG
TACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGCGTAGTACTAAGTGCAGGCT
ACTACGTGTACCAGACTATT
Found at i:57273832 original size:44 final size:44
Alignment explanation
Indices: 57273696--57273928 Score: 127
Period size: 44 Copynumber: 5.0 Consensus size: 44
57273686 TCAGTGTCCT
* ** *
57273696 CAAATCCTATACCTCTGAAGTTGTAGTGGGTCGGATTGAAGCTA
1 CAAATCCTATACCCCTGAAGTTGTAGTTAGTCAGATTGAAGCTA
* * * *
57273740 CAATAGCAAATCT-TATCTCCCTGAAGTTGTA-ATGGTGCAAGA-TAAAGCTA
1 CAA-ATC----CTATA-C-CCCTGAAGTTGTAGTTAGT-C-AGATTGAAGCTA
* *
57273790 CAAATCCTATACCCTTGAAGTTGCAGTTAGTCAGATTGAAGCTA
1 CAAATCCTATACCCCTGAAGTTGTAGTTAGTCAGATTGAAGCTA
* * *
57273834 CCATGGCGAATCTTAT-CTCCCTAAAGTTGTAG-TAGAGCAAGA-TGAAGCTA
1 -CA-----AATCCTATAC-CCCTGAAGTTGTAGTTAG-TC-AGATTGAAGCTA
**
57273884 CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTA
1 CAAATCCTATACCCCTGAAGTTGTAGTTAGTCAGATTGAAGCTA
57273928 C
1 C
57273929 CATGGCGAAT
Statistics
Matches: 143, Mismatches: 22, Indels: 48
0.67 0.10 0.23
Matches are distributed among these distances:
43 6 0.04
44 52 0.36
45 12 0.08
46 2 0.01
48 2 0.01
49 14 0.10
50 50 0.35
51 5 0.03
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
CAAATCCTATACCCCTGAAGTTGTAGTTAGTCAGATTGAAGCTA
Found at i:57273884 original size:50 final size:49
Alignment explanation
Indices: 57273826--57273975 Score: 154
Period size: 50 Copynumber: 3.1 Consensus size: 49
57273816 TTAGTCAGAT
57273826 TGAAGCTACCATGGCGAATCTTATCTCCCTAAAGTTGTAGTAGAGCAAGA
1 TGAAGCTACCATGGCGAATCTTATCTCCCTAAAGTTGTAGT-GAGCAAGA
* * *
57273876 TGAAGCTA-CA-----AATCCTATAC-CCCTGAAGTTGTAGTGGGTC-AGA
1 TGAAGCTACCATGGCGAATCTTAT-CTCCCTAAAGTTGTAGTGAG-CAAGA
* *
57273919 TTGAAGCTACCATGGCGAATCTTATCTCCCTAAAGATGCAGTGGAGCAAGA
1 -TGAAGCTACCATGGCGAATCTTATCTCCCTAAAGTTGTAGT-GAGCAAGA
57273970 TGAAGC
1 TGAAGC
57273976 CACAAATCCT
Statistics
Matches: 80, Mismatches: 8, Indels: 24
0.71 0.07 0.21
Matches are distributed among these distances:
43 5 0.06
44 30 0.38
45 3 0.04
49 3 0.04
50 34 0.43
51 5 0.06
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (49 bp):
TGAAGCTACCATGGCGAATCTTATCTCCCTAAAGTTGTAGTGAGCAAGA
Found at i:57274006 original size:94 final size:94
Alignment explanation
Indices: 57273696--57273988 Score: 433
Period size: 94 Copynumber: 3.1 Consensus size: 94
57273686 TCAGTGTCCT
* * * * *
57273696 CAAATCCTATACCTCTGAAGTTGTAGTGGGTCGGATTGAAGCTACAATAGCAAATCTTATCTCCC
1 CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTACCATGGCGAATCTTATCTCCC
* * * *
57273761 TGAAGTTGTAATGGTGCAAGATAAAGCTA
66 TAAAGTTGTAGTGGAGCAAGATGAAGCTA
* * **
57273790 CAAATCCTATACCCTTGAAGTTGCAGTTAGTCAGATTGAAGCTACCATGGCGAATCTTATCTCCC
1 CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTACCATGGCGAATCTTATCTCCC
*
57273855 TAAAGTTGTAGTAGAGCAAGATGAAGCTA
66 TAAAGTTGTAGTGGAGCAAGATGAAGCTA
57273884 CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTACCATGGCGAATCTTATCTCCC
1 CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTACCATGGCGAATCTTATCTCCC
* * *
57273949 TAAAGATGCAGTGGAGCAAGATGAAGCCA
66 TAAAGTTGTAGTGGAGCAAGATGAAGCTA
57273978 CAAATCCTATA
1 CAAATCCTATA
57273989 TCTCTAAAAT
Statistics
Matches: 177, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 177 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (94 bp):
CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTACCATGGCGAATCTTATCTCCC
TAAAGTTGTAGTGGAGCAAGATGAAGCTA
Found at i:57274039 original size:94 final size:94
Alignment explanation
Indices: 57273696--57274063 Score: 290
Period size: 94 Copynumber: 3.9 Consensus size: 94
57273686 TCAGTGTCCT
* * * * * * * *
57273696 CAAATCCTATACCTCTGAAGTTGTAGTGGGTCGGATTGAAGCTACAATAGCAAATCTTATCTCCC
1 CAAATCCTATACCCCTAAAATTATAGTGGATCAGATTGAAACTACAATAACAAATCTTATCTCCC
* * * * * *
57273761 TGAAGTTGTAATGGTGCAAGATAAAGCTA
66 TAAAGTTGCAGTGGAGCAAGATGAAGCCA
* * * ** * * * ** *
57273790 CAAATCCTATACCCTTGAAGTTGCAGT-TAGTCAGATTGAAGCTACCATGGCGAATCTTATCTCC
1 CAAATCCTATACCCCTAAAATTATAGTGGA-TCAGATTGAAACTACAATAACAAATCTTATCTCC
* * *
57273854 CTAAAGTTGTAGTAGAGCAAGATGAAGCTA
65 CTAAAGTTGCAGTGGAGCAAGATGAAGCCA
* * * * * * ** *
57273884 CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTACCATGGCGAATCTTATCTCCC
1 CAAATCCTATACCCCTAAAATTATAGTGGATCAGATTGAAACTACAATAACAAATCTTATCTCCC
*
57273949 TAAAGATGCAGTGGAGCAAGATGAAGCCA
66 TAAAGTTGCAGTGGAGCAAGATGAAGCCA
* * * * *
57273978 CAAATCCTATATCTCTAAAATTATAGTGGAAT-GGATTGAAACTATAATAACAAATCCTATCTCC
1 CAAATCCTATACCCCTAAAATTATAGTGG-ATCAGATTGAAACTACAATAACAAATCTTATCTCC
* * *
57274042 TTAAAGTTGCAATGGGGCAAGA
65 CTAAAGTTGCAGTGGAGCAAGA
57274064 CGAATTAGTA
Statistics
Matches: 231, Mismatches: 40, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
94 230 1.00
95 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (94 bp):
CAAATCCTATACCCCTAAAATTATAGTGGATCAGATTGAAACTACAATAACAAATCTTATCTCCC
TAAAGTTGCAGTGGAGCAAGATGAAGCCA
Found at i:57274041 original size:188 final size:188
Alignment explanation
Indices: 57273696--57274050 Score: 426
Period size: 188 Copynumber: 1.9 Consensus size: 188
57273686 TCAGTGTCCT
* *
57273696 CAAATCCTATACCTCTGAAGTTGTAGTGGGTCGGATTGAAGCTACAATAGCAAATCTTATCTCCC
1 CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTACAATAGCAAATCTTATCTCCC
* * * * * * * * * *
57273761 TGAAGTTGTAATGGTGCAAGATAAAGCTACAAATCCTATACCCTTGAAGTTGCAGTTAGTCAGAT
66 TAAAGATGCAATGGAGCAAGATAAAGCCACAAATCCTATACCCTTAAAATTACAGTGAATCAGAT
* * ** * *
57273826 TGAAGCTACCATGGCGAATCTTATCTCCCTAAAGTTGTAGTAGAGCAAGATGAAGCTA
131 TGAAACTACAATAACAAATCCTATCTCCCTAAAGTTGTAGTAGAGCAAGATGAAGCTA
* * *
57273884 CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTACCATGGCGAATCTTATCTCCC
1 CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTACAATAGCAAATCTTATCTCCC
* * * * *
57273949 TAAAGATGCAGTGGAGCAAGATGAAGCCACAAATCCTATA-TCTCTAAAATTATAGTGGAAT-GG
66 TAAAGATGCAATGGAGCAAGATAAAGCCACAAATCCTATACCCT-TAAAATTACAGT-GAATCAG
* *
57274012 ATTGAAACTATAATAACAAATCCTATCTCCTTAAAGTTG
129 ATTGAAACTACAATAACAAATCCTATCTCCCTAAAGTTG
57274051 CAATGGGGCA
Statistics
Matches: 137, Mismatches: 28, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
187 2 0.01
188 133 0.97
189 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (188 bp):
CAAATCCTATACCCCTGAAGTTGTAGTGGGTCAGATTGAAGCTACAATAGCAAATCTTATCTCCC
TAAAGATGCAATGGAGCAAGATAAAGCCACAAATCCTATACCCTTAAAATTACAGTGAATCAGAT
TGAAACTACAATAACAAATCCTATCTCCCTAAAGTTGTAGTAGAGCAAGATGAAGCTA
Found at i:57276846 original size:20 final size:19
Alignment explanation
Indices: 57276821--57276915 Score: 86
Period size: 20 Copynumber: 4.7 Consensus size: 19
57276811 AAAATTATTA
57276821 TTTTATAAAATTTTAAATTT
1 TTTTATAAAATTTTAAA-TT
* * *
57276841 TTTTATATATTTTTAGATT
1 TTTTATAAAATTTTAAATT
57276860 TTTT-TAAAATTTTATAATTT
1 TTTTATAAAATTTTA-AA-TT
57276880 TTTTAAATATAAATTTTGAAA-T
1 TTTT--ATA-AAATTTT-AAATT
57276902 TTTTATAAAATTTT
1 TTTTATAAAATTTT
57276916 TTAATTTTAA
Statistics
Matches: 62, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
18 8 0.13
19 14 0.23
20 23 0.37
22 5 0.08
23 2 0.03
24 9 0.15
25 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTATAAAATTTTAAATT
Found at i:57276886 original size:19 final size:19
Alignment explanation
Indices: 57276821--57276886 Score: 82
Period size: 19 Copynumber: 3.5 Consensus size: 19
57276811 AAAATTATTA
*
57276821 TTTTATAAAATTTTA-AAT
1 TTTTTTAAAATTTTATAAT
*
57276839 TTTTTTATATATTTT-TAGAT
1 TTTTTTA-AAATTTTATA-AT
57276859 TTTTTTAAAATTTTATAAT
1 TTTTTTAAAATTTTATAAT
57276878 TTTTTTAAA
1 TTTTTTAAA
57276887 TATAAATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 6 0.15
19 24 0.59
20 11 0.27
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTTTAAAATTTTATAAT
Found at i:57276921 original size:19 final size:19
Alignment explanation
Indices: 57276821--57276964 Score: 82
Period size: 21 Copynumber: 7.2 Consensus size: 19
57276811 AAAATTATTA
*
57276821 TTTTATAAAA-TTTTAAAT
1 TTTTATAAAATTTTTTAAT
* *
57276839 TTTT-TTATATATTTTTAGAT
1 TTTTATAAAAT-TTTTTA-AT
* *
57276859 TTTTTTAAAATTTTATAATTT
1 TTTTATAAAATTTTTTAA--T
**
57276880 TTTTAAATATAAATTTTGAAAT
1 TTTT--ATA-AAATTTTTTAAT
57276902 TTTTATAAAATTTTTTAA-
1 TTTTATAAAATTTTTTAAT
57276920 TTTTA-AAAATTGTTTTGAAT
1 TTTTATAAAATT-TTTT-AAT
57276940 TTTTGA-AAATTATTTTTTAAT
1 TTTT-ATAAA--ATTTTTTAAT
57276961 TTTT
1 TTTT
57276965 GTTTCGAGAG
Statistics
Matches: 100, Mismatches: 11, Indels: 27
0.72 0.08 0.20
Matches are distributed among these distances:
17 9 0.09
18 13 0.13
19 17 0.17
20 18 0.18
21 20 0.20
22 9 0.09
23 5 0.05
24 9 0.09
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (19 bp):
TTTTATAAAATTTTTTAAT
Found at i:57276935 original size:20 final size:20
Alignment explanation
Indices: 57276911--57276963 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
57276901 TTTTTATAAA
57276911 ATTTTTTAATTTTAAAAATT
1 ATTTTTTAATTTTAAAAATT
* * *
57276931 -GTTTTGAATTTTTGAAAATT
1 ATTTTTTAA-TTTTAAAAATT
57276951 ATTTTTTAATTTT
1 ATTTTTTAATTTT
57276964 TGTTTCGAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
19 6 0.23
20 14 0.54
21 6 0.23
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (20 bp):
ATTTTTTAATTTTAAAAATT
Found at i:57277047 original size:9 final size:9
Alignment explanation
Indices: 57277033--57277062 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
57277023 ACACTAATAT
57277033 ATTATTCGA
1 ATTATTCGA
57277042 ATTATTCGA
1 ATTATTCGA
*
57277051 GTTATTCGA
1 ATTATTCGA
57277060 ATT
1 ATT
57277063 GTAAAATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.47
Consensus pattern (9 bp):
ATTATTCGA
Found at i:57295807 original size:94 final size:94
Alignment explanation
Indices: 57295641--57296295 Score: 592
Period size: 94 Copynumber: 7.0 Consensus size: 94
57295631 CTGTGAAACA
* ** * * *
57295641 ACAAA-TCATATACCCCTAAAGTT-CTAGTAGGTCAGATTGAAGCTACCATAACGAATCTTATCT
1 ACAAATTC-TATACCCCTAAAGTTGC-AGTGGGTTGGAATGAAGCTACCATAGCAAATCTTATCT
*
57295704 CCTTGAAGTTGCAGTGGAGCAAGATGAAGCT
64 CCTTAAAGTTGCAGTGGAGCAAGATGAAGCT
* *
57295735 ACAAATTCTATACCCCTGAAGTTCCAGTGGGTTGGAATGAAGCTACCATAGCAAATCTTATCTCC
1 ACAAATTCTATACCCCTAAAGTTGCAGTGGGTTGGAATGAAGCTACCATAGCAAATCTTATCTCC
* ** *
57295800 CTAAAGTTATAGTAGAGCAAGATGAAGCT
66 TTAAAGTTGCAGTGGAGCAAGATGAAGCT
* * * * * * *
57295829 ACAAA-TCATATACCCCTGAAGTTGTAGTAGGTCT-GATTGAAGCTACCATAACGAATTTTATCT
1 ACAAATTC-TATACCCCTAAAGTTGCAGTGGGT-TGGAATGAAGCTACCATAGCAAATCTTATCT
* *
57295892 CCCTAAAGTTGCAGTGGAGCAAGATGAAACT
64 CCTTAAAGTTGCAGTGGAGCAAGATGAAGCT
* * *
57295923 ACAAATAT-TATGCCCTTCAAA-TTG-AGTGGGTCGGAATGAAGCTACCATAGCAAATCTTATCT
1 ACAAAT-TCTATACCCCT-AAAGTTGCAGTGGGTTGGAATGAAGCTACCATAGCAAATCTTATCT
* * * *
57295985 CCCTGAAGTT-CTAGTGAAGCAAGATGAAGTT
64 CCTTAAAGTTGC-AGTGGAGCAAGATGAAGCT
* * * * * ** * *
57296016 ACAAATCCTATGCCCTTAAAGATGAAGTGGGTCAGAATGAAGCTATCATAGCGAATCTTATCTCC
1 ACAAATTCTATACCCCTAAAGTTGCAGTGGGTTGGAATGAAGCTACCATAGCAAATCTTATCTCC
* *
57296081 TTAAAGTTGTAGTGGAGCAAGATGAAACT
66 TTAAAGTTGCAGTGGAGCAAGATGAAGCT
* * * * * * * *
57296110 ATAAATCCTATACTCATAAAGTTGCAGTGGATTGGAATGAAACTACAATAGCAAATCTTATCTTC
1 ACAAATTCTATACCCCTAAAGTTGCAGTGGGTTGGAATGAAGCTACCATAGCAAATCTTATCTCC
* *
57296175 TTAAAGTTGTAG-GGAAACAAGATGAAGCT
66 TTAAAGTTGCAGTGG-AGCAAGATGAAGCT
* ** * ** * * * * * * *
57296204 ACAAATCCTATACCATTGAAGTTGCAGTAAGTTGAAATGAAACTACAACAACAAATCTTATTTCT
1 ACAAATTCTATACCCCTAAAGTTGCAGTGGGTTGGAATGAAGCTACCATAGCAAATCTTATCTCC
*
57296269 TTAAA-TTGCAATGGAGCAAGATGAAGC
66 TTAAAGTTGCAGTGGAGCAAGATGAAGC
57296296 CATGATACTA
Statistics
Matches: 466, Mismatches: 80, Indels: 31
0.81 0.14 0.05
Matches are distributed among these distances:
92 4 0.01
93 93 0.20
94 362 0.78
95 6 0.01
96 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (94 bp):
ACAAATTCTATACCCCTAAAGTTGCAGTGGGTTGGAATGAAGCTACCATAGCAAATCTTATCTCC
TTAAAGTTGCAGTGGAGCAAGATGAAGCT
Found at i:57296059 original size:187 final size:185
Alignment explanation
Indices: 57295641--57296217 Score: 706
Period size: 188 Copynumber: 3.1 Consensus size: 185
57295631 CTGTGAAACA
* * **
57295641 ACAAATCATATACCCCTAAAGTTCTAGTAGGTCAGATTGAAGCTACCATAACGAATCTTATCTCC
1 ACAAATCCTATACCCCTAAAGATGAAGTAGGTCAGATTGAAGCTACCATAACGAATCTTATCTCC
* * * * *
57295706 TTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATTCTATACCCCTGAAGTTCCAGTGGGTTGGA
66 TTAAAGTTGCAGTGGAGCAAGATGAAACTACAAATT-TATACCCAT-AAATT-GAGTGGGTTGGA
57295771 ATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTTATAGT-AGAGCAAGATGAAGCT
128 ATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTTATAGTGA-AGCAAGATGAAGCT
* * * * * *
57295829 ACAAATCATATACCCCTGAAGTTGTAGTAGGTCTGATTGAAGCTACCATAACGAATTTTATCTCC
1 ACAAATCCTATACCCCTAAAGATGAAGTAGGTCAGATTGAAGCTACCATAACGAATCTTATCTCC
* * * *
57295894 CTAAAGTTGCAGTGGAGCAAGATGAAACTACAAATATTATGCCCTTCAAATTGAGTGGGTCGGAA
66 TTAAAGTTGCAGTGGAGCAAGATGAAACTACAAAT-TTATACCCAT-AAATTGAGTGGGTTGGAA
* * *
57295959 TGAAGCTACCATAGCAAATCTTATCTCCCTGAAGTTCTAGTGAAGCAAGATGAAGTT
129 TGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTTATAGTGAAGCAAGATGAAGCT
* * * * * *
57296016 ACAAATCCTATGCCCTTAAAGATGAAGTGGGTCAGAATGAAGCTATCATAGCGAATCTTATCTCC
1 ACAAATCCTATACCCCTAAAGATGAAGTAGGTCAGATTGAAGCTACCATAACGAATCTTATCTCC
* * * * *
57296081 TTAAAGTTGTAGTGGAGCAAGATGAAACTATAAATCCTATACTCATAAAGTTGCAGTGGATTGGA
66 TTAAAGTTGCAGTGGAGCAAGATGAAACTACAAAT-TTATACCCATAAA-TTG-AGTGGGTTGGA
* * * * * * *
57296146 ATGAAACTACAATAGCAAATCTTATCTTCTTAAAGTTGTAGGGAAACAAGATGAAGCT
128 ATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTTATAGTGAAGCAAGATGAAGCT
57296204 ACAAATCCTATACC
1 ACAAATCCTATACC
57296218 ATTGAAGTTG
Statistics
Matches: 337, Mismatches: 48, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
186 3 0.01
187 157 0.47
188 176 0.52
189 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (185 bp):
ACAAATCCTATACCCCTAAAGATGAAGTAGGTCAGATTGAAGCTACCATAACGAATCTTATCTCC
TTAAAGTTGCAGTGGAGCAAGATGAAACTACAAATTTATACCCATAAATTGAGTGGGTTGGAATG
AAGCTACCATAGCAAATCTTATCTCCCTAAAGTTATAGTGAAGCAAGATGAAGCT
Found at i:57296182 original size:281 final size:281
Alignment explanation
Indices: 57295678--57296209 Score: 667
Period size: 281 Copynumber: 1.9 Consensus size: 281
57295668 TAGGTCAGAT
* * * *
57295678 TGAAGCTACCATAACGAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATTC
1 TGAAGCTACCATAACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAGATGAAGCTACAAATCC
* * * **
57295743 TATACCCCTGAAGTTCCAGTGGGTTGGAATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTT
66 TATACCCCTAAAGATCAAGTGGGTCAGAATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTT
* * * * * *
57295808 ATAGTAGAGCAAGATGAAGCTACAAATCATATACCCCTGAAGTTGTAGTAGGTCTGATTGAAGCT
131 ATAGTAGAGCAAGATGAAACTACAAATCATATACCCATAAAGTTGCAGTAGGTCTGAATGAAACT
* * * *
57295873 ACCATAACGAATTTTATCTCCCTAAAGTTGCAGTGG-AGCAAGATGAAACTACAAATATTATGCC
196 ACAATAACAAATCTTATCTCCCTAAAGTTGCAG-GGAAACAAGATGAAACTACAAATATTATGCC
57295937 CTTCAAATTGAGTGGGTCGGAA
260 CTTCAAATTGAGTGGGTCGGAA
* *
57295959 TGAAGCTACCATAGCAAATCTTATCTCCCTGAAGTT-CTAGTGAAGCAAGATGAAGTTACAAATC
1 TGAAGCTACCATAACAAATCTTATCTCCCTGAAGTTGC-AGTGAAGCAAGATGAAGCTACAAATC
* * * * * *
57296023 CTATGCCCTTAAAGATGAAGTGGGTCAGAATGAAGCTATCATAGCGAATCTTATCTCCTTAAAGT
65 CTATACCCCTAAAGATCAAGTGGGTCAGAATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGT
* * * * *
57296088 TGTAGTGGAGCAAGATGAAACTATAAATCCTATACTCATAAAGTTGCAGT-GGAT-TGGAATGAA
130 TATAGTAGAGCAAGATGAAACTACAAATCATATACCCATAAAGTTGCAGTAGG-TCT-GAATGAA
* * * * *
57296151 ACTACAATAGCAAATCTTATCTTCTTAAAGTTGTAGGGAAACAAGATGAAGCTACAAAT
193 ACTACAATAACAAATCTTATCTCCCTAAAGTTGCAGGGAAACAAGATGAAACTACAAAT
57296210 CCTATACCAT
Statistics
Matches: 210, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
280 6 0.03
281 204 0.97
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (281 bp):
TGAAGCTACCATAACAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAGATGAAGCTACAAATCC
TATACCCCTAAAGATCAAGTGGGTCAGAATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTT
ATAGTAGAGCAAGATGAAACTACAAATCATATACCCATAAAGTTGCAGTAGGTCTGAATGAAACT
ACAATAACAAATCTTATCTCCCTAAAGTTGCAGGGAAACAAGATGAAACTACAAATATTATGCCC
TTCAAATTGAGTGGGTCGGAA
Found at i:57296289 original size:281 final size:281
Alignment explanation
Indices: 57295694--57296295 Score: 647
Period size: 281 Copynumber: 2.1 Consensus size: 281
57295684 TACCATAACG
* * *
57295694 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATTCTATACCCCTGAAGTTC
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTAAAGATC
* **
57295759 CAGTGGGTTGGAATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTTATAGTAGAGCAAGATG
66 AAGTGGGTCAGAATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTTATAGTAGAGCAAGATG
* * * * * * * * *
57295824 AAGCTACAAATCATATACCCCTGAAGTTGTAGTAGGTCTGATTGAAGCTACCATAACGAATTTTA
131 AAACTACAAATCATATACCCATAAAGTTGCAGTAGGTCTGAATGAAACTACAATAACAAATCTTA
* * * * **
57295889 TCTCCCTAAAGTTGCAGTGGAGCAAGATGAAACTACAAATATTATGCCCTTCAAATTGAGTGGGT
196 TCTCCCTAAAGTTGCAGTGGAACAAGATGAAACTACAAATACTATACCATTCAAATTGAGTAAGT
* * * * *
57295954 CGGAATGAAGCTACCATAGCA
261 CGAAATGAAACTACAACAACA
* * * * *
57295975 AATCTTATCTCCCTGAAGTT-CTAGTGAAGCAAGATGAAGTTACAAATCCTATGCCCTTAAAGAT
1 AATCTTATCTCCTTGAAGTTGC-AGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTAAAGAT
* * * * * *
57296039 GAAGTGGGTCAGAATGAAGCTATCATAGCGAATCTTATCTCCTTAAAGTTGTAGTGGAGCAAGAT
65 CAAGTGGGTCAGAATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTTATAGTAGAGCAAGAT
* * * *
57296104 GAAACTATAAATCCTATACTCATAAAGTTGCAGT-GGAT-TGGAATGAAACTACAATAGCAAATC
130 GAAACTACAAATCATATACCCATAAAGTTGCAGTAGG-TCT-GAATGAAACTACAATAACAAATC
* * * * * * *
57296167 TTATCTTCTTAAAGTTGTAG-GGAAACAAGATGAAGCTACAAATCCTATACCATTGAAGTTGCAG
193 TTATCTCCCTAAAGTTGCAGTGG-AACAAGATGAAACTACAAATACTATACCATTCAAATTG-AG
*
57296231 TAAGTTGAAATGAAACTACAACAACA
256 TAAGTCGAAATGAAACTACAACAACA
* * * *
57296257 AATCTTAT-TTCTTTAAATTGCAATGGAGCAAGATGAAGC
1 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAGC
57296296 CATGATACTA
Statistics
Matches: 259, Mismatches: 56, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
280 6 0.02
281 224 0.86
282 29 0.11
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (281 bp):
AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTAAAGATC
AAGTGGGTCAGAATGAAGCTACCATAGCAAATCTTATCTCCCTAAAGTTATAGTAGAGCAAGATG
AAACTACAAATCATATACCCATAAAGTTGCAGTAGGTCTGAATGAAACTACAATAACAAATCTTA
TCTCCCTAAAGTTGCAGTGGAACAAGATGAAACTACAAATACTATACCATTCAAATTGAGTAAGT
CGAAATGAAACTACAACAACA
Found at i:57298138 original size:12 final size:12
Alignment explanation
Indices: 57298123--57298155 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
57298113 AAATATTTTT
57298123 ATTATTATTGTC
1 ATTATTATTGTC
57298135 ATTATTATT-TC
1 ATTATTATTGTC
57298146 -TTATTATTGT
1 ATTATTATTGT
57298156 ATTCACTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 8 0.40
11 3 0.15
12 9 0.45
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (12 bp):
ATTATTATTGTC
Found at i:57302355 original size:14 final size:13
Alignment explanation
Indices: 57302324--57302362 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
57302314 TATCCTGGAA
57302324 AATTAA-AACAAG
1 AATTAAGAACAAG
*
57302336 AATTAAGAACACAT
1 AATTAAGAACA-AG
57302350 AATTAAGAACAAG
1 AATTAAGAACAAG
57302363 TCAAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
14 12 0.52
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.18
Consensus pattern (13 bp):
AATTAAGAACAAG
Found at i:57313455 original size:22 final size:21
Alignment explanation
Indices: 57313422--57313463 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
57313412 TTGATGAATA
57313422 AATTCTTTTATAAATATATAC
1 AATTCTTTTATAAATATATAC
* *
57313443 AATTTTTTGTATATATATATA
1 AATTCTTT-TATAAATATATA
57313464 GTTGGTGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.52
Consensus pattern (21 bp):
AATTCTTTTATAAATATATAC
Found at i:57316790 original size:27 final size:26
Alignment explanation
Indices: 57316751--57316841 Score: 128
Period size: 27 Copynumber: 3.4 Consensus size: 26
57316741 ACAAGGAATG
*
57316751 GCCTTTGTGGCGAACTCTAAAAGAACA
1 GCCTTTGTGGCGAACTCTAAAA-AATA
* *
57316778 GCCTTTGTAGCGAACTATAAAATAATA
1 GCCTTTGTGGCGAACTCTAAAA-AATA
57316805 GCCTTTGTGGCGAACTCTGAAAAAATA
1 GCCTTTGTGGCGAACTCT-AAAAAATA
57316832 GCCTTTGTGG
1 GCCTTTGTGG
57316842 AAAATTCTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 53 0.93
28 4 0.07
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (26 bp):
GCCTTTGTGGCGAACTCTAAAAAATA
Found at i:57316863 original size:54 final size:54
Alignment explanation
Indices: 57316751--57316863 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
57316741 ACAAGGAATG
** *
57316751 GCCTTTGTGGCGAACTCTAAAAGAACAGCCTTTGTAGCGAACTATAAAATAATA
1 GCCTTTGTGGCGAACTCTAAAAGAACAGCCTTTGTAGAAAACTATAAAACAATA
* * * * * *
57316805 GCCTTTGTGGCGAACTCTGAAAA-AATAGCCTTTGTGGAAAATTCTAAAACGATT
1 GCCTTTGTGGCGAACTCT-AAAAGAACAGCCTTTGTAGAAAACTATAAAACAATA
57316859 GCCTT
1 GCCTT
57316864 AGTAGTATGT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 45 0.92
55 4 0.08
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (54 bp):
GCCTTTGTGGCGAACTCTAAAAGAACAGCCTTTGTAGAAAACTATAAAACAATA
Found at i:57325188 original size:50 final size:50
Alignment explanation
Indices: 57325070--57325362 Score: 263
Period size: 50 Copynumber: 5.8 Consensus size: 50
57325060 GTTGTGAGAA
* * * *
57325070 CACATGCGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
*
57325122 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
** * * * * * *
57325172 CACATGTGTAGTACTAAGTGGGGGCTACTATGCGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * * * *
57325223 CACGTGTGTAGTACTAAGTGCAGGGTA-TAACGTGTATCATATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACT-ACGTGTACCAGATTGTTAGGT
** * *
57325273 CATGTGTGCAGTACTAAGTGCAGGCTACTACGTG-A-CTGAATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATTGTTAGGT
* * *
57325322 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
57325363 GAGCTTCGGT
Statistics
Matches: 194, Mismatches: 39, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
48 4 0.02
49 41 0.21
50 80 0.41
51 39 0.20
52 30 0.15
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:57325246 original size:101 final size:99
Alignment explanation
Indices: 57325116--57325362 Score: 266
Period size: 101 Copynumber: 2.5 Consensus size: 99
57325106 TAAGACAGTT
* * *
57325116 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGC
**
57325181 AGTACTAAGTGGGGGCTACTATGCGT-ACCCG-ATAG
66 AGTACTAAGTGCAGGCTACTA--CGTGA-CCGAATAG
* * * * **
57325216 CTTCGATCACGTGTGTAGTACTAAGTGCAGGGTA-TAACGTGTATCATATGGTTAGGTCATGTGT
1 -TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACT-ACGTGTACCAGATGGTTAGGTCACATGT
* *
57325280 GCAGTACTAAGTGCAGGCTACTACGTGACTGAATTG
64 GCAGTACTAAGTGCAGGCTACTACGTGACCGAATAG
* * * * *
57325316 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
57325363 GAGCTTCGGT
Statistics
Matches: 120, Mismatches: 22, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
99 41 0.34
100 6 0.05
101 73 0.61
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (99 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGC
AGTACTAAGTGCAGGCTACTACGTGACCGAATAG
Found at i:57330883 original size:40 final size:40
Alignment explanation
Indices: 57330846--57331029 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
57330836 GCTACTCGTT
*
57330846 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
57330886 CAATTGCCTTCAGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
57330926 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
57330965 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
57331006 CAAA-GTCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
57331030 ACATCATTCA
Statistics
Matches: 119, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 72 0.61
41 14 0.12
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:57330963 original size:79 final size:82
Alignment explanation
Indices: 57330846--57331030 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
57330836 GCTACTCGTT
* * *
57330846 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCAGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
57330909 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
57330926 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
57330989 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
57331006 CAAA-GTCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57331031 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:57345070 original size:37 final size:37
Alignment explanation
Indices: 57345011--57345119 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
57345001 AGCTCAGACG
* *
57345011 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
57345048 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
57345085 TAATCTCCTCATGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
57345120 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:57345391 original size:48 final size:48
Alignment explanation
Indices: 57345265--57345449 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
57345255 GCACATTGCC
*
57345265 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
57345315 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
57345363 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
57345411 TACATTTTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
57345450 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 81 0.65
49 2 0.02
50 41 0.33
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:57345454 original size:98 final size:98
Alignment explanation
Indices: 57345265--57345448 Score: 302
Period size: 98 Copynumber: 1.9 Consensus size: 98
57345255 GCACATTGCC
*
57345265 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
57345330 GACCATTCAGCTTTACCACATATGCATATCTCA
66 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
57345363 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCATACAT-T-TTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
*
57345426 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCAGCTTTACCACATAT
57345449 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 29 0.36
97 1 0.01
98 50 0.62
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
GACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:57345512 original size:47 final size:47
Alignment explanation
Indices: 57345371--57345612 Score: 281
Period size: 47 Copynumber: 5.1 Consensus size: 47
57345361 CATACATATT
* * * * **
57345371 TCACATTAGCCATTCGGCTTTACCACATATA--CATTTCTCATACATTTT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TC--ACATTCA
* * * *
57345419 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * * *
57345466 CCACATTGGCCATTCGGCCTTATCACACATATTCGTGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
57345513 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
57345560 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
57345607 TCACAT
1 TCACAT
57345613 AAAATCCTAA
Statistics
Matches: 171, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
47 134 0.78
48 31 0.18
49 2 0.01
50 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:57345539 original size:22 final size:22
Alignment explanation
Indices: 57345512--57345583 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
57345502 GCTCACATTC
57345512 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
57345534 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
57345558 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
57345581 ATC
1 ATC
57345584 TCATATATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:57345613 original size:25 final size:25
Alignment explanation
Indices: 57345534--57345613 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
57345524 ATTCGGCCTT
**
57345534 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
57345559 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
*
57345581 ATCTCATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
57345606 ATCACATA
1 ATCACATA
57345614 AAATCCTAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
22 9 0.22
23 6 0.15
24 6 0.15
25 19 0.47
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:57353227 original size:57 final size:58
Alignment explanation
Indices: 57353098--57353241 Score: 150
Period size: 57 Copynumber: 2.5 Consensus size: 58
57353088 CATATGTTGC
* * * * * *
57353098 AGATAGAATTTAG-CTCGGACGGGTAATTCTAATGTAAGCCCTCTTGAGCTTAGGTTAT
1 AGATAGGATTTAGCCT-GGACGGGTAATCCAAATGTAAGCCCTCTAGAGCATAGGCTAT
* * *
57353156 AAATTA-GATTTAGCCTGGACGGGTAATCCAAAT-TAAGCTCTCTAGAGCATATGCTAT
1 AGA-TAGGATTTAGCCTGGACGGGTAATCCAAATGTAAGCCCTCTAGAGCATAGGCTAT
* *
57353213 AGATAGGATTTAGCCTAGACTGGTAATCC
1 AGATAGGATTTAGCCTGGACGGGTAATCC
57353242 TGCTGTAAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
56 2 0.03
57 42 0.59
58 23 0.32
59 4 0.06
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (58 bp):
AGATAGGATTTAGCCTGGACGGGTAATCCAAATGTAAGCCCTCTAGAGCATAGGCTAT
Found at i:57356550 original size:40 final size:40
Alignment explanation
Indices: 57356476--57356686 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
57356466 TCTTCGGAAT
** * *
57356476 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
57356514 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
57356554 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
57356594 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
57356634 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
57356674 TTAGCCTGGATAT
1 TTAGCCCGGATAT
57356687 TATTCGAATA
Statistics
Matches: 147, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
38 4 0.03
39 16 0.11
40 126 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:57363277 original size:47 final size:47
Alignment explanation
Indices: 57363207--57363697 Score: 781
Period size: 47 Copynumber: 10.5 Consensus size: 47
57363197 AAACCCATAC
*
57363207 GTGAAAGTGTAT-TGTGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
57363253 GTGAAAGTGTATCTGTGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
57363300 GTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
57363347 GTGAAAGTGTATCTGTGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
57363394 GTG-AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
57363440 GTG-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
57363486 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
57363533 GTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
57363580 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
57363627 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
57363674 GTGAAAGTGCATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
57363698 TCCCGAAGGG
Statistics
Matches: 424, Mismatches: 19, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
46 101 0.24
47 323 0.76
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:57363628 original size:233 final size:235
Alignment explanation
Indices: 57363207--57363697 Score: 781
Period size: 233 Copynumber: 2.1 Consensus size: 235
57363197 AAACCCATAC
* * * *
57363207 GTGAAAGTGTAT-TGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATCTGTGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
* * *
57363271 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCG
66 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
* *
57363336 ATGTGATGAATGTGAAAGTGTATCTGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG
131 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * *
57363400 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAAT
196 TGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAAT
57363440 GTG-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
57363504 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
66 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
57363569 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
131 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * *
57363634 TGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
196 TGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAAT
* *
57363674 GTGAAAGTGCATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
57363698 TCCCGAAGGG
Statistics
Matches: 235, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
232 8 0.03
233 172 0.73
234 37 0.16
235 18 0.08
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (235 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAAT
Found at i:57363871 original size:37 final size:37
Alignment explanation
Indices: 57363815--57363893 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
57363805 CCGAGCTCTA
* *
57363815 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
57363852 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
57363889 AAGAC
1 AAGAC
57363894 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:57369301 original size:40 final size:40
Alignment explanation
Indices: 57369254--57369437 Score: 246
Period size: 40 Copynumber: 4.6 Consensus size: 40
57369244 CTCGCACAAG
*
57369254 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
* * *
57369294 GCCTTCGGGACTTAGCCCGGATACAGTCGCTAGC-TCAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAT-AAAT
* *
57369334 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAAT
* * *
57369374 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
*
57369414 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
57369438 CATTCGAATA
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 120 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
Found at i:57377275 original size:15 final size:15
Alignment explanation
Indices: 57377238--57377266 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
57377228 TTTTTCTATC
57377238 TAATAATAATAATTA
1 TAATAATAATAATTA
57377253 TAATAATAATAATT
1 TAATAATAATAATT
57377267 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:57380010 original size:40 final size:40
Alignment explanation
Indices: 57379957--57380096 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
57379947 AACACACCAG
*
57379957 TTTGGCACCCAATGCCTCATCGGATAATTTGAAGTAATAA
1 TTTGACACCCAATGCCTCATCGGATAATTTGAAGTAATAA
* * * * *
57379997 TTTGACACTCAATGTCTCATCGGCTAAATCGAAGT-A-AA
1 TTTGACACCCAATGCCTCATCGGATAATTTGAAGTAATAA
* * * * *
57380035 -TTGACACCCAGTGCCTCATCGAATTGATCTGAAGTAGTAA
1 TTTGACACCCAATGCCTCATCGGA-TAATTTGAAGTAATAA
* * *
57380075 ATTGACACCCAGTGTCTCATCG
1 TTTGACACCCAATGCCTCATCG
57380097 ACTCGAAGTC
Statistics
Matches: 79, Mismatches: 17, Indels: 7
0.77 0.17 0.07
Matches are distributed among these distances:
37 18 0.23
38 9 0.11
39 1 0.01
40 31 0.39
41 20 0.25
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (40 bp):
TTTGACACCCAATGCCTCATCGGATAATTTGAAGTAATAA
Found at i:57387119 original size:26 final size:26
Alignment explanation
Indices: 57387090--57387171 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
57387080 TATGATCACG
57387090 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
* * * *
57387116 TGTGTATTA-GATGGTG-AGG-TCAC-G
1 TGTGTAGTACTA-AGTGCAGGCT-ACTA
57387140 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
*
57387166 CGTGTA
1 TGTGTA
57387172 CCAGACTGTT
Statistics
Matches: 41, Mismatches: 9, Indels: 12
0.66 0.15 0.19
Matches are distributed among these distances:
24 12 0.29
25 12 0.29
26 17 0.41
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.32
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGCAGGCTACTA
Found at i:57387222 original size:49 final size:50
Alignment explanation
Indices: 57386983--57387225 Score: 258
Period size: 49 Copynumber: 4.9 Consensus size: 50
57386973 ACTATTGTGA
* * * *
57386983 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTAGTT
* * * * ** *
57387032 GGTCTCATGTGTAGTTCTAAGTGCAGGCTACTATGCGTACCCGAAAACTAT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTAGT-T
* * ** * *
57387083 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGA-TGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTAGT-T
* *
57387133 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTAGTT
* *
57387182 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
57387226 TAGCTTCGGC
Statistics
Matches: 162, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 76 0.47
50 48 0.30
51 38 0.23
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTAGTT
Found at i:57388589 original size:27 final size:27
Alignment explanation
Indices: 57388551--57388681 Score: 169
Period size: 27 Copynumber: 4.9 Consensus size: 27
57388541 CACTAGATAT
57388551 AGATAT-TGTGGCAGAGCCACCAGAAC
1 AGATATATGTGGCAGAGCCACCAGAAC
*
57388577 AGATATATGTGGCAGAGCCACCAGATC
1 AGATATATGTGGCAGAGCCACCAGAAC
* * *
57388604 AGATA-ATTGTGGCATAACCACCAGGAC
1 AGATATA-TGTGGCAGAGCCACCAGAAC
*
57388631 AGATATATGTGGCAGAGCCACCAGATC
1 AGATATATGTGGCAGAGCCACCAGAAC
*
57388658 AGATA-ATTGTGGCATAGCCACCAG
1 AGATATA-TGTGGCAGAGCCACCAG
57388682 GACGCTTCCT
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
26 8 0.09
27 82 0.90
28 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.18
Consensus pattern (27 bp):
AGATATATGTGGCAGAGCCACCAGAAC
Found at i:57388682 original size:54 final size:54
Alignment explanation
Indices: 57388551--57388684 Score: 234
Period size: 54 Copynumber: 2.5 Consensus size: 54
57388541 CACTAGATAT
* *
57388551 AGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATC
1 AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATC
*
57388604 AGATAATTGTGGCATAACCACCAGGACAGATATATGTGGCAGAGCCACCAGATC
1 AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATC
57388658 AGATAATTGTGGCATAGCCACCAGGAC
1 AGATAATTGTGGCATAGCCACCAGGAC
57388685 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 4 0.05
54 72 0.95
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.18
Consensus pattern (54 bp):
AGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATC
Found at i:57390337 original size:26 final size:26
Alignment explanation
Indices: 57390302--57390409 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
57390292 TGAAATGCCC
* *
57390302 ATCATAGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
57390328 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
57390354 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
57390380 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
57390406 ATCA
1 ATCA
57390410 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:57395203 original size:12 final size:12
Alignment explanation
Indices: 57395186--57395216 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
57395176 AGTACTACCT
57395186 CGGCCTCGACCA
1 CGGCCTCGACCA
57395198 CGGCCTCGACCA
1 CGGCCTCGACCA
57395210 CGGCCTC
1 CGGCCTC
57395217 TTCCCCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:57396721 original size:27 final size:27
Alignment explanation
Indices: 57396679--57396811 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
57396669 GTCACGAGAT
57396679 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
57396705 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* * *
57396732 TCAGATA-ATTGTGGCATAGCCACCAGG
1 ACAGATATA-TGTGGCAGAGCCACCAGA
57396759 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* *
57396786 TCAGATA-ATTGTGGCATAGCCACCAG
1 ACAGATATA-TGTGGCAGAGCCACCAG
57396812 GACGCTTCCT
Statistics
Matches: 95, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
26 10 0.11
27 84 0.88
28 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.18
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:57396812 original size:54 final size:54
Alignment explanation
Indices: 57396675--57396814 Score: 246
Period size: 54 Copynumber: 2.6 Consensus size: 54
57396665 CGAAGTCACG
* *
57396675 AGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
57396729 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
57396783 AGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATCAGATAATTGTGGCATAGCCACCAGGAC
57396815 GCTTCCTCCA
Statistics
Matches: 83, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACC
Found at i:57398094 original size:26 final size:26
Alignment explanation
Indices: 57398062--57398169 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
57398052 TGAAATGCCC
*
57398062 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
57398088 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
57398114 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
57398140 ATCATGGAACATTTTCCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
57398166 ATCA
1 ATCA
57398170 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:57400985 original size:41 final size:39
Alignment explanation
Indices: 57400856--57400995 Score: 124
Period size: 40 Copynumber: 3.6 Consensus size: 39
57400846 ACACACCAAT
* * * * *
57400856 TTGACACCCAGTGCCTCAACGGATAATTCGAGGTAATAAC
1 TTGACACCCAGTGCCTCATCGAATAATCCGAAGT-ATAAA
* * *
57400896 TTGACACCCAGTGTCTCATC-AGCTAAACCGAAG--TAAA
1 TTGACACCCAGTGCCTCATCGA-ATAATCCGAAGTATAAA
* *
57400933 TTGGCATCCAGTGCCTCATCGAATTAATCCGAAGTATTAAA
1 TTGACACCCAGTGCCTCATCGAA-TAATCCGAAGTA-TAAA
*
57400974 TTGACACCCAGTGTCTCATCGA
1 TTGACACCCAGTGCCTCATCGA
57400996 CTCGAAGTCA
Statistics
Matches: 78, Mismatches: 16, Indels: 11
0.74 0.15 0.10
Matches are distributed among these distances:
37 20 0.26
38 10 0.13
40 25 0.32
41 23 0.29
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (39 bp):
TTGACACCCAGTGCCTCATCGAATAATCCGAAGTATAAA
Found at i:57412806 original size:47 final size:43
Alignment explanation
Indices: 57412699--57413005 Score: 199
Period size: 47 Copynumber: 6.7 Consensus size: 43
57412689 TTTGTGCGCC
* * * *
57412699 AGTGTAAGACATGCCTGGGACATGCTTCGGC-CATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCA-A-CA--AGAGCT
*
57412745 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAACCAAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-T-CAA-CAAGAGCT
* * * * *
57412793 AGTGTAAGACATGTCTGGCACATGCATCAGC-CATAGTATAATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTC--A--ACAAGAGCT
* *
57412839 AGTGTAAGACTATGTCTGGGACATGGCATCGG-TACAGAGATGAGTGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCT-CA-ACA--AGAGCT
* * *
57412887 AGTGTAAGAAATGTCTGGGACATGCATCGGCCTCGACAGAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTCAACA-AG--AGCT
* * *
57412934 AGTGTAAGACATGTCTGGGACATGCATCGGCT-AAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCAACA--AGAGCT
57412978 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
57413006 AGCACGCGTA
Statistics
Matches: 210, Mismatches: 31, Indels: 42
0.74 0.11 0.15
Matches are distributed among these distances:
43 1 0.00
44 30 0.14
45 6 0.03
46 44 0.21
47 85 0.40
48 39 0.19
49 1 0.00
50 2 0.01
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCAACAAGAGCT
Found at i:57412860 original size:94 final size:90
Alignment explanation
Indices: 57412699--57413057 Score: 354
Period size: 94 Copynumber: 3.9 Consensus size: 90
57412689 TTTGTGCGCC
* * * * *
57412699 AGTGTAAGACATGCCTGGGACATGCTTCGGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATAAGAGCCAGTGTAAGACCATGTCTGG
57412764 GACATGGCATCGGCATCCAACCAAGGGCT
66 GACATGGCATCGGC-T-CAA--AAGGGCT
* * *
57412793 AGTGTAAGACATGTCTGGCACATGCATCAGCCATAGTATAATAGCCAGTGTAAGACTATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATAAGAGCCAGTGTAAGACCATGTCTGG
*
57412858 GACATGGCATCGG-TACAGAGATGAGTGCT
66 GACATGGCATCGGCT-CA-A-A--AGGGCT
* * * *
57412887 AGTGTAAGAAATGTCTGGGACATGCATCGGCC-TCG-ACAGAGATAGCCAGTGTAAGA-CATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATA-AG--AGCCAGTGTAAGACCATGTC
*
57412949 TGGGACAT-GCATCGGCT-AAGAGTTGTGCT
63 TGGGACATGGCATCGGCTCAAAAG--G-GCT
* *
57412978 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATAGTATAAGAGCCAGTGTAAGACCATGTC
*
57413042 TGGGGCATGGCATCGG
63 TGGGACATGGCATCGG
57413058 TAATATATCC
Statistics
Matches: 222, Mismatches: 26, Indels: 34
0.79 0.09 0.12
Matches are distributed among these distances:
88 2 0.01
91 32 0.14
92 20 0.09
93 25 0.11
94 128 0.58
95 15 0.07
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (90 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATAAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCTCAAAAGGGCT
Found at i:57413055 original size:141 final size:139
Alignment explanation
Indices: 57412696--57413057 Score: 380
Period size: 141 Copynumber: 2.6 Consensus size: 139
57412686 TGATTTGTGC
* * * *
57412696 GCCAGTGTAAGACATGCCTGGGACATGCTTCGGCCATATTATGAGAGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCGTA-TATGAGAGCCAGTGTAAGACCATGTC
* *
57412761 TGGGACATGGCATCGGCATCCAACCAAGGGCTAGTGTAAGACATGTCTGGCACATGCATCAGCCA
65 TGGGACATGGCATCGGCATCCAACCAAGAGCCAGTGTAAGACATGTCTGGCACATGCATCAGCCA
57412826 TAGTATAATA
130 TAGTATAATA
* * * * *
57412836 GCCAGTGTAAGACTATGTCTGGGACATGGCATCGGTACAG-AGATGAGTGCTAGTGTAAGA-AAT
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATC-G-ACCGTATATGAGAGCCAGTGTAAGACCAT
* * *
57412899 GTCTGGGACAT-GCATCGGCCT-CGA-CAGAGATAGCCAGTGTAAGACATGTCTGGGACATGCAT
62 GTCTGGGACATGGCATCGGCATCCAACCA-AG--AGCCAGTGTAAGACATGTCTGGCACATGCAT
* * **
57412961 CGGCTA-AG-AGTTGT-
124 CAGCCATAGTA-TAATA
*
57412975 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-AC-CGTATATGAGAGCCAGTGTAAGACCATG
*
57413040 TCTGGGGCATGGCATCGG
63 TCTGGGACATGGCATCGG
57413058 TAATATATCC
Statistics
Matches: 183, Mismatches: 27, Indels: 23
0.79 0.12 0.10
Matches are distributed among these distances:
137 8 0.04
138 16 0.09
139 34 0.19
140 38 0.21
141 64 0.35
142 20 0.11
143 2 0.01
144 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (139 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACCGTATATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGGCATCCAACCAAGAGCCAGTGTAAGACATGTCTGGCACATGCATCAGCCAT
AGTATAATA
Found at i:57420328 original size:47 final size:46
Alignment explanation
Indices: 57420255--57420617 Score: 242
Period size: 47 Copynumber: 7.7 Consensus size: 46
57420245 TGATTTGTGT
* *
57420255 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGA
* * *
57420301 GCCAATGTAAGACCATGTCTGGGACATGGCATCGG-CATC-TAGACGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CAT-GATGAGA
* * * * * *
57420349 GCTAGTGTAAGACATGTCTGGCACATGCATCAGCCATACT-ATAATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TGATGAGA
* * * * *
57420395 GCCAGTGTAATACCACGTCTGGGACATGGCATCGGCTTAGA-GATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATGATGAGA
* *
57420443 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACA-GA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACATGATGAGA
* * ** * *
57420490 GCCAGTGTAAGACGTGTTTGGGACATGCATTAGCTA-A-GA-GTTGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATG-AGA
* ** * *
57420534 GCTAGTGTAAGACATGTCTGGGACATGCATTAG-CATGCATATATAAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA--CAT-GATGAGA
57420582 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
57420618 AATATATCCC
Statistics
Matches: 245, Mismatches: 49, Indels: 41
0.73 0.15 0.12
Matches are distributed among these distances:
43 5 0.02
44 32 0.13
46 38 0.16
47 89 0.36
48 60 0.24
49 16 0.07
50 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGA
Found at i:57420419 original size:94 final size:92
Alignment explanation
Indices: 57420253--57420618 Score: 384
Period size: 94 Copynumber: 3.9 Consensus size: 92
57420243 GGTGATTTGT
* * * * * * *
57420253 GTGCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAATGTAAGACCATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATAAGAGCCAGTGTAAGACCATG
*
57420318 TCTGGGACATGGCATCGGCATCTAGACGA
66 TCTGGGACATGGCATCGGCAT-AAGA-GA
* * * *
57420347 GTGCTAGTGTAAGACATGTCTGGCACATGCATCAGCCATACTATAATAGCCAGTGTAATACCACG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATAAGAGCCAGTGTAAGACCATG
*
57420412 TCTGGGACATGGCATCGGCTTAGAGATGA
66 TCTGGGACATGGCATCGGCATA-AGA-GA
* * *
57420441 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAC-AGAGATAGCCAGTGTAAGA-C
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATA-AGAGCCAGTGTAAGACC
* * ** *
57420503 GTGTTTGGGACAT-GCATTAGC-TAAGAGTT
63 ATGTCTGGGACATGGCATCGGCATAAGAG-A
* *
57420532 GAGCTAGTGTAAGACATGTCTGGGACATGCATTAGCATGCATA-TATAAGAGCCAGTGTAAGACC
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGC---CATACTATAAGAGCCAGTGTAAGACC
57420596 ATGTCTGGGACATGGCATCGGCA
63 ATGTCTGGGACATGGCATCGGCA
57420619 ATATATCCCA
Statistics
Matches: 226, Mismatches: 33, Indels: 25
0.80 0.12 0.09
Matches are distributed among these distances:
90 1 0.00
91 36 0.16
92 16 0.07
93 22 0.10
94 134 0.59
95 17 0.08
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (92 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATAAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATAAGAGA
Found at i:57420614 original size:141 final size:139
Alignment explanation
Indices: 57420255--57420618 Score: 370
Period size: 141 Copynumber: 2.6 Consensus size: 139
57420245 TGATTTGTGT
*
57420255 GCCAGTGTAAGACATGTCTGGGACATGC-TTCGGCCA-CAT-TATGAGAGCCAATGTAAGACCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATT-GG-CATCATATATGAGAGCCAGTGTAAGACCAT
*
57420317 GTCTGGGACATGGCATCGGCATCTAGACGAGTGCTAGTGTAAGACATGTCTGGCACATGCATCAG
64 GTCTGGGACATGGCATCGGCA-CTAGACGAGTGCCAGTGTAAGACATGTCTGGCACATGCATCAG
*
57420382 CCATACTATAATA
128 CCATAC-AGAATA
* * * * * * * *
57420395 GCCAGTGTAATACCACGTCTGGGACATGGCATCGGC-TTAGAGATGAGTGCTAGTGTAAGA-CAT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCATCATATATGAGAGCCAGTGTAAGACCAT
* * * * *
57420458 GTCTGGGACAT-GCATCGGC-CTCGACAGAGATAGCCAGTGTAAGACGTGTTTGGGACATGCATT
64 GTCTGGGACATGGCATCGGCACTAGAC-GAG-T-GCCAGTGTAAGACATGTCTGGCACATGCATC
*
57420521 AG-C-TA-AGAGTTGA
126 AGCCATACAGA-AT-A
* * *
57420534 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCATGCATATATAAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCAT-CATATATGAGAGCCAGTGTAAGACCATG
57420599 TCTGGGACATGGCATCGGCA
65 TCTGGGACATGGCATCGGCA
57420619 ATATATCCCA
Statistics
Matches: 181, Mismatches: 28, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
137 8 0.04
138 20 0.11
139 33 0.18
140 35 0.19
141 65 0.36
142 19 0.10
143 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (139 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTGGCATCATATATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCACTAGACGAGTGCCAGTGTAAGACATGTCTGGCACATGCATCAGCCA
TACAGAATA
Found at i:57426354 original size:50 final size:51
Alignment explanation
Indices: 57426276--57426404 Score: 172
Period size: 50 Copynumber: 2.5 Consensus size: 51
57426266 GACCATGGCA
*
57426276 ACAAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
* * *
57426327 A-AAGTGATAAGTGATAGCTTCGGCTACAGTTATTTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
57426377 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
57426405 CTGATCAGTG
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
50 42 0.61
51 27 0.39
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:57426418 original size:31 final size:31
Alignment explanation
Indices: 57426380--57426560 Score: 231
Period size: 31 Copynumber: 5.8 Consensus size: 31
57426370 ACAAATGACA
*
57426380 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
57426411 AGTGAAAAATGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
57426442 AGTGAAAAGTGGTAG-TTCAGGTTACCTGAAT-
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTG-ATC
* *
57426473 AGTGAAAAGTGGTAGCTCCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
57426504 AGTGAAAAAATGATAGCTCCGGCTACCTGATC
1 AGTG-AAAAGTGGTAGCTTCGGCTACCTGATC
*
57426536 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
57426561 AAGTGACAAG
Statistics
Matches: 131, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
30 5 0.04
31 94 0.72
32 32 0.24
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:57426549 original size:94 final size:93
Alignment explanation
Indices: 57426380--57426550 Score: 270
Period size: 94 Copynumber: 1.8 Consensus size: 93
57426370 ACAAATGACA
* * * *
57426380 AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAATGGTAGCTTCTGCTACCTGATCAGT
1 AGTGAAAAGTGGTAGCTCCAGCTACCTGATCAGTGAAAAATGATAGCTCCGGCTACCTGATCAGT
57426445 GAAAAGTGGTAGTTCAGGTTACCTGAAT
66 GAAAAGTGGTAGTTCAGGTTACCTGAAT
* *
57426473 AGTGAAAAGTGGTAGCTCCGGCTACCTGATTAGTGAAAAAATGATAGCTCCGGCTACCTGATCAG
1 AGTGAAAAGTGGTAGCTCCAGCTACCTGATCAGTG-AAAAATGATAGCTCCGGCTACCTGATCAG
*
57426538 TGAATAGTGGTAG
65 TGAAAAGTGGTAG
57426551 CTTCGGCTAC
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
93 32 0.46
94 38 0.54
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (93 bp):
AGTGAAAAGTGGTAGCTCCAGCTACCTGATCAGTGAAAAATGATAGCTCCGGCTACCTGATCAGT
GAAAAGTGGTAGTTCAGGTTACCTGAAT
Found at i:57426571 original size:7 final size:7
Alignment explanation
Indices: 57426559--57426587 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
57426549 AGCTTCGGCT
57426559 ACAAGTG
1 ACAAGTG
57426566 ACAAGTG
1 ACAAGTG
57426573 ACAAGTG
1 ACAAGTG
57426580 ACAAGTG
1 ACAAGTG
57426587 A
1 A
57426588 TTTCCGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:57437999 original size:46 final size:47
Alignment explanation
Indices: 57437893--57438008 Score: 144
Period size: 50 Copynumber: 2.4 Consensus size: 47
57437883 TGTCTTCAAC
* * *
57437893 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGACTCATTCCTATCTCCAAAGCC--A-ATATATCTAAT
* * *
57437943 ATGGGCTTACATGGCTCATTCCTATCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGACTCATTCCTATCTCCAAAGCCAATATATCTAAT
57437989 ATGGACTTACATGACTCATT
1 ATGGACTTACATGACTCATT
57438009 TCTGTCCTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 28 0.48
50 30 0.52
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGACTCATTCCTATCTCCAAAGCCAATATATCTAAT
Found at i:57439152 original size:26 final size:26
Alignment explanation
Indices: 57439123--57439191 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
57439113 ACCTATATAT
57439123 GGCTCTTCGTGAGCTTCCTAATTAAA
1 GGCTCTTCGTGAGCTTCCTAATTAAA
* * *
57439149 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCGTGAGCTTCCTAATTAAA
*
57439175 GGCTCTCCG-GAGCTTCC
1 GGCTCTTCGTGAGCTTCC
57439192 CTATATGGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
25 8 0.21
26 30 0.79
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCTAATTAAA
Found at i:57444537 original size:37 final size:36
Alignment explanation
Indices: 57444475--57444550 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
57444465 GATAATCATT
*
57444475 TTAATATTAAATTAATAAAATACTATTAAGATAAGTA
1 TTAATATTAAATTAATAAAATACTATTAAAATAA-TA
*
57444512 TTAA-ATTAAATTTAATATTAA-ACTATTAAAATAATA
1 TTAATATTAAA-TTAATA-AAATACTATTAAAATAATA
57444548 TTA
1 TTA
57444551 TTTTTTGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 11 0.31
37 22 0.63
38 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (36 bp):
TTAATATTAAATTAATAAAATACTATTAAAATAATA
Found at i:57448666 original size:93 final size:93
Alignment explanation
Indices: 57448554--57448725 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
57448544 CGCCCATAAG
*
57448554 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
57448618 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
57448647 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
57448712 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
57448726 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:57448720 original size:46 final size:46
Alignment explanation
Indices: 57448547--57448722 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
57448537 TGTAACCCGC
* *
57448547 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
57448593 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
57448643 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
57448686 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
57448723 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:57450187 original size:48 final size:48
Alignment explanation
Indices: 57450012--57450205 Score: 157
Period size: 48 Copynumber: 4.1 Consensus size: 48
57450002 GGATATTACA
* * *
57450012 CTTACATGGGACCACTTATCGATGCCAATGCCATGTCCCAGACATGGT
1 CTTACATGGGATCACATAACGATGCCAATGCCATGTCCCAGACATGGT
* * * * * *
57450060 ATTACATGAGATCACA-CA-TAT-CGAA-GCCGATAG-CCTAG-CTATGGT
1 CTTACATGGGATCACATAACGATGCCAATGCC-AT-GTCCCAGAC-ATGGT
* * * *
57450105 CTTACATGATGTTCTCATATCGATGCCAATGCCATGTCCCAGACATGGT
1 CTTACATG-GGATCACATAACGATGCCAATGCCATGTCCCAGACATGGT
** * *
57450154 CTTACATGGGATCACATAACGATGCTGATGCCATATCCCAGATATGGT
1 CTTACATGGGATCACATAACGATGCCAATGCCATGTCCCAGACATGGT
57450202 CTTA
1 CTTA
57450206 TGCGGGATCT
Statistics
Matches: 110, Mismatches: 26, Indels: 20
0.71 0.17 0.13
Matches are distributed among these distances:
44 4 0.04
45 21 0.19
46 8 0.07
48 51 0.46
49 22 0.20
50 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
CTTACATGGGATCACATAACGATGCCAATGCCATGTCCCAGACATGGT
Found at i:57451850 original size:16 final size:16
Alignment explanation
Indices: 57451829--57451859 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57451819 CTATGCATGT
*
57451829 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
57451845 AAAATACAAAAGACA
1 AAAATACAAAAGACA
57451860 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:57456947 original size:20 final size:20
Alignment explanation
Indices: 57456922--57456959 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
57456912 CGGTTAAGTC
57456922 ATTGATTC-ATCAGTCAAGCA
1 ATTGATTCAATC-GTCAAGCA
57456942 ATTGATTCAATCGTCAAG
1 ATTGATTCAATCGTCAAG
57456960 TCAACTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (20 bp):
ATTGATTCAATCGTCAAGCA
Found at i:57458418 original size:24 final size:26
Alignment explanation
Indices: 57458357--57458418 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
57458347 TATCTTTACA
*
57458357 TATTTTTAATAATTTGATTATTACTT
1 TATTTTTAATAATTTAATTATTACTT
*
57458383 TAGTTTTGAATAA-TTAATTA-TA-TT
1 TA-TTTTTAATAATTTAATTATTACTT
57458407 TATTTTATAATA
1 TATTTT-TAATA
57458419 TAAAATAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 4 0.13
24 8 0.26
25 2 0.06
26 8 0.26
27 9 0.29
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (26 bp):
TATTTTTAATAATTTAATTATTACTT
Found at i:57459299 original size:18 final size:18
Alignment explanation
Indices: 57459278--57459317 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
57459268 GGTTTTTTAA
57459278 TTTTG-TCAGGTTTAGGGT
1 TTTTGTTCAGG-TTAGGGT
*
57459296 TTTTGTTGAGGTTAGGGT
1 TTTTGTTCAGGTTAGGGT
57459314 TTTT
1 TTTT
57459318 AAGGGTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.10, C:0.03, G:0.33, T:0.55
Consensus pattern (18 bp):
TTTTGTTCAGGTTAGGGT
Found at i:57464794 original size:21 final size:21
Alignment explanation
Indices: 57464757--57464829 Score: 110
Period size: 21 Copynumber: 3.4 Consensus size: 21
57464747 AGGCACTTTA
*
57464757 TGTGTCGTATTTCAGGCACTTCG
1 TGTGTCGTA-TT-AGGCACCTCG
57464780 TGTGTCGTATTAGGCACCTCG
1 TGTGTCGTATTAGGCACCTCG
*
57464801 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATTAGGCACCTCG
57464822 TGTGTCGT
1 TGTGTCGT
57464830 TTCATACACT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
21 37 0.77
22 2 0.04
23 9 0.19
ACGTcount: A:0.12, C:0.23, G:0.29, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATTAGGCACCTCG
Found at i:57470356 original size:13 final size:13
Alignment explanation
Indices: 57470338--57470371 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
57470328 CGTTCAAAAA
57470338 ACCGTTGGAATTG
1 ACCGTTGGAATTG
57470351 ACCGTTGGAATTG
1 ACCGTTGGAATTG
57470364 ACCGTTGG
1 ACCGTTGG
57470372 CGAAAAGCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (13 bp):
ACCGTTGGAATTG
Found at i:57471145 original size:3 final size:3
Alignment explanation
Indices: 57471139--57471165 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
57471129 ATGATCGTTG
57471139 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
57471166 AAGCATGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:57473759 original size:9 final size:9
Alignment explanation
Indices: 57473745--57473777 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
57473735 ATTCGAGTTG
57473745 ACTCGAATA
1 ACTCGAATA
*
57473754 ACTCGATTA
1 ACTCGAATA
57473763 ACTCGAATA
1 ACTCGAATA
57473772 ACTCGA
1 ACTCGA
57473778 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:57473768 original size:18 final size:18
Alignment explanation
Indices: 57473745--57473779 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
57473735 ATTCGAGTTG
57473745 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
57473763 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
57473780 CGTTTAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:57478765 original size:43 final size:43
Alignment explanation
Indices: 57478717--57478833 Score: 139
Period size: 43 Copynumber: 2.7 Consensus size: 43
57478707 CATAGGATTT
* * *
57478717 TCGATATGTG-TTCTCATATAAGACCACGTCTGGGA-TGTTGGCA
1 TCGATATGTGATT-ACATGTAAGACCACGTCTGGGACAG-TGGCA
* * **
57478760 TCGATAAGTGATTACATGTTAGACCTTGTCTGGGACAGTGGCA
1 TCGATATGTGATTACATGTAAGACCACGTCTGGGACAGTGGCA
57478803 TCGATATGTGATTACATGTAAGACCACGTCT
1 TCGATATGTGATTACATGTAAGACCACGTCT
57478834 AAGACATTAG
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
43 58 0.95
44 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGATATGTGATTACATGTAAGACCACGTCTGGGACAGTGGCA
Found at i:57481488 original size:17 final size:17
Alignment explanation
Indices: 57481466--57481500 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
57481456 TATGTACATG
57481466 TTCCATATTAGTTACTT
1 TTCCATATTAGTTACTT
57481483 TTCCATATTAGTTACTT
1 TTCCATATTAGTTACTT
57481500 T
1 T
57481501 GCTTTTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (17 bp):
TTCCATATTAGTTACTT
Found at i:57485930 original size:18 final size:18
Alignment explanation
Indices: 57485907--57485943 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
57485897 ATCGTGTGGC
57485907 TCACACGGCCAGGTGACA
1 TCACACGGCCAGGTGACA
57485925 TCACACGGCCAGGTGACA
1 TCACACGGCCAGGTGACA
57485943 T
1 T
57485944 GCCCATATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.32, G:0.27, T:0.14
Consensus pattern (18 bp):
TCACACGGCCAGGTGACA
Found at i:57491063 original size:15 final size:17
Alignment explanation
Indices: 57491033--57491064 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
57491023 TTGATACTTG
57491033 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
57491050 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
57491065 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:57492908 original size:17 final size:17
Alignment explanation
Indices: 57492870--57492911 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
57492860 AAATGTGAAG
*
57492870 TAGAGAAAGAGGAAATC
1 TAGAGAAAGAGGAAAGC
*
57492887 GAGAGAAAGA-GAAAGGC
1 TAGAGAAAGAGGAAA-GC
57492904 TAGAGAAA
1 TAGAGAAA
57492912 ATGAGTGTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.55, C:0.05, G:0.33, T:0.07
Consensus pattern (17 bp):
TAGAGAAAGAGGAAAGC
Found at i:57494575 original size:27 final size:27
Alignment explanation
Indices: 57494536--57494730 Score: 187
Period size: 27 Copynumber: 7.2 Consensus size: 27
57494526 GGTTGTTAAG
*
57494536 ACCCCTGGTTTGTAAAATTACTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* ** *
57494563 ACCCCCGGGTTGTAAAATTACCGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* *
57494590 ACCCCTGACTTGTAACATTACTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* *
57494617 ACCCCTAATTTGTAAAATTA-TTAAATT
1 ACCCCTGATTTGTAAAATTACTGAAA-T
* * *
57494644 ACCCCTAATTTTTAAAATTACTAAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
** *
57494671 ATCCCC-GGGTTGTAAAATTATTGAAAT
1 A-CCCCTGATTTGTAAAATTACTGAAAT
* * **
57494698 ACCCTTGATTTGTGAAATTACCAAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
57494725 ACCCCT
1 ACCCCT
57494731 ATAGGGTAGG
Statistics
Matches: 136, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 7 0.05
27 121 0.89
28 8 0.06
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (27 bp):
ACCCCTGATTTGTAAAATTACTGAAAT
Found at i:57494603 original size:54 final size:53
Alignment explanation
Indices: 57494536--57494729 Score: 208
Period size: 54 Copynumber: 3.6 Consensus size: 53
57494526 GGTTGTTAAG
* * *
57494536 ACCCCTGGTTTGTAAAATTACTGAAATACCCCCGGGTTGTAAAATTACCGAAAT
1 ACCCCTGATTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTA-TGAAAT
* * * **** *
57494590 ACCCCTGACTTGTAACATTACTGAAATACCCCTAATTTGTAAAATTATTAAATT
1 ACCCCTGATTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTATGAAA-T
* * *
57494644 ACCCCTAATTTTTAAAATTACTAAAATATCCCCGGGTTGTAAAATTATTGAAAT
1 ACCCCTGATTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTA-TGAAAT
* * *
57494698 ACCCTTGATTTGTGAAATTACCAAAATACCCC
1 ACCCCTGATTTGTAAAATTACTAAAATACCCC
57494730 TATAGGGTAG
Statistics
Matches: 112, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
53 3 0.03
54 105 0.94
55 4 0.04
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (53 bp):
ACCCCTGATTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTATGAAAT
Found at i:57494828 original size:27 final size:27
Alignment explanation
Indices: 57494714--57494819 Score: 158
Period size: 27 Copynumber: 3.9 Consensus size: 27
57494704 GATTTGTGAA
* * *
57494714 ATTACCAAAATACCCCTATAGGGTAGG
1 ATTACCGAAATACCCTTGTAGGGTAGG
*
57494741 ATTATCGAAATACCCTTGTAGGGTAGG
1 ATTACCGAAATACCCTTGTAGGGTAGG
*
57494768 ATTATCGAAATACCCTTGTAGGGTAGG
1 ATTACCGAAATACCCTTGTAGGGTAGG
*
57494795 ATTACCGAAATACCCTCGTAGGGTA
1 ATTACCGAAATACCCTTGTAGGGTA
57494820 AAATGACCGT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (27 bp):
ATTACCGAAATACCCTTGTAGGGTAGG
Found at i:57501224 original size:15 final size:15
Alignment explanation
Indices: 57501204--57501239 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
57501194 CCCATTAAAG
*
57501204 ATTTGAAAGCAAAAT
1 ATTTGAAAGAAAAAT
57501219 ATTTGAAAGAAAAAT
1 ATTTGAAAGAAAAAT
57501234 ATTTGA
1 ATTTGA
57501240 TTGTGAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.53, C:0.03, G:0.14, T:0.31
Consensus pattern (15 bp):
ATTTGAAAGAAAAAT
Found at i:57502913 original size:34 final size:34
Alignment explanation
Indices: 57502870--57502941 Score: 126
Period size: 34 Copynumber: 2.1 Consensus size: 34
57502860 CATTTAATAT
*
57502870 GATCATATAGTAGAGGCGAGGGTTTTCCTGAAGA
1 GATCATATAGTAGAGGCGAGGGTTTGCCTGAAGA
*
57502904 GATCATATAGTAGAGGCGGGGGTTTGCCTGAAGA
1 GATCATATAGTAGAGGCGAGGGTTTGCCTGAAGA
57502938 GATC
1 GATC
57502942 CATGACATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.28, C:0.12, G:0.35, T:0.25
Consensus pattern (34 bp):
GATCATATAGTAGAGGCGAGGGTTTGCCTGAAGA
Found at i:57505982 original size:16 final size:17
Alignment explanation
Indices: 57505954--57505986 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
57505944 AAATAGATTT
57505954 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
57505971 TTAATT-AAAATTTTAA
1 TTAATTAAAAATTTTAA
57505987 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:57506214 original size:17 final size:18
Alignment explanation
Indices: 57506175--57506217 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
57506165 AGGTTTGAAA
57506175 ATTTTAATTAATTAAATTT
1 ATTTTAATTAA-TAAATTT
*
57506194 -TTTTAATTAA-GAATTT
1 ATTTTAATTAATAAATTT
57506210 ATTTTAAT
1 ATTTTAAT
57506218 CCCATTTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 5 0.23
17 7 0.32
18 10 0.45
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
ATTTTAATTAATAAATTT
Found at i:57510177 original size:60 final size:60
Alignment explanation
Indices: 57510102--57510233 Score: 144
Period size: 60 Copynumber: 2.2 Consensus size: 60
57510092 CCAACTGTGT
* * * *
57510102 TGATATGGGCAAGGCCCAATATA-TCTCGA-CTTGTTATA-GGGCTATGGCCTAGATTGATAC
1 TGATATGGGCTAGGCCCAATATACT-TCGATATTG-TA-AGGGGCTATGGCCCAGATTAATAC
* * * *
57510162 TGATATGGGCTAGGCCTAGTATACTTTGATATTGTAAGGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCTAGGCCCAATATACTTCGATATTGTAAGGGGCTATGGCCCAGATTAATAC
57510222 TGATATGGGCTA
1 TGATATGGGCTA
57510234 AGGCTCAGTT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
59 1 0.02
60 56 0.92
61 4 0.07
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (60 bp):
TGATATGGGCTAGGCCCAATATACTTCGATATTGTAAGGGGCTATGGCCCAGATTAATAC
Found at i:57510528 original size:9 final size:10
Alignment explanation
Indices: 57510502--57510534 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
57510492 ATAAGGCTGC
57510502 TTTAATTATT
1 TTTAATTATT
57510512 TTTAATTATT
1 TTTAATTATT
57510522 TTT-ATTATGT
1 TTTAATTAT-T
57510532 TTT
1 TTT
57510535 GTTAGCTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 5 0.23
10 17 0.77
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (10 bp):
TTTAATTATT
Found at i:57513229 original size:17 final size:17
Alignment explanation
Indices: 57513203--57513236 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
57513193 CGAGAGCAAG
*
57513203 AATAATTGACTCTAGGT
1 AATAACTGACTCTAGGT
57513220 AATAACTGACTCTAGGT
1 AATAACTGACTCTAGGT
57513237 TGATTAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (17 bp):
AATAACTGACTCTAGGT
Found at i:57515777 original size:5 final size:5
Alignment explanation
Indices: 57515745--57515796 Score: 68
Period size: 5 Copynumber: 9.6 Consensus size: 5
57515735 GAAGTTTAAA
57515745 AAAAT AACAAT AAACAT AAAAAT AAAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AA-AAT AAA-AT -AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT
57515794 AAA
1 AAA
57515797 CGGACTTAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
5 26 0.59
6 15 0.34
7 3 0.07
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:57525561 original size:43 final size:42
Alignment explanation
Indices: 57525486--57525625 Score: 138
Period size: 42 Copynumber: 3.3 Consensus size: 42
57525476 TCCCAAATAT
* * * *
57525486 ATATGGTCTTACATGTAATATCGTATCT-ATGCCAATAGCCCAG
1 ATATGGTCTTACATGAAATCTCATAT-TGATGCC-ATATCCCAG
* *
57525529 TTATGGTCTTACATGAAATCTCATATTGATGCCATATCCCAA
1 ATATGGTCTTACATGAAATCTCATATTGATGCCATATCCCAG
* * * * * *
57525571 ATATGGTTTTACACGAAGTCTCAGACTGACGCCATATCCCAG
1 ATATGGTCTTACATGAAATCTCATATTGATGCCATATCCCAG
*
57525613 ATATAGTCTTACA
1 ATATGGTCTTACA
57525626 CGTAACCTCA
Statistics
Matches: 80, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 53 0.66
43 27 0.34
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (42 bp):
ATATGGTCTTACATGAAATCTCATATTGATGCCATATCCCAG
Found at i:57525593 original size:42 final size:42
Alignment explanation
Indices: 57525530--57525636 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
57525520 ATAGCCCAGT
* * * *
57525530 TATGGTCTTACATGAAATCTCATATTGATGCCATATCCCAAA
1 TATGGTCTTACACGAAATCTCAGACTGACGCCATATCCCAAA
* * *
57525572 TATGGTTTTACACGAAGTCTCAGACTGACGCCATATCCCAGA
1 TATGGTCTTACACGAAATCTCAGACTGACGCCATATCCCAAA
* * *
57525614 TATAGTCTTACACGTAACCTCAG
1 TATGGTCTTACACGAAATCTCAG
57525637 TAACCCTAAT
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
TATGGTCTTACACGAAATCTCAGACTGACGCCATATCCCAAA
Found at i:57530314 original size:41 final size:41
Alignment explanation
Indices: 57530257--57530356 Score: 146
Period size: 41 Copynumber: 2.4 Consensus size: 41
57530247 TTCAGATATT
* * *
57530257 CCACAGCTCGTGTGAGCAGTATAGTGTATCTATGTTCTGAC
1 CCACAGCTCGTGTGAGCAGCATAGTGCATCTACGTTCTGAC
**
57530298 CCACAGCTCGTGTGAGCAGCATCTTGCATCTACGTTCTGAC
1 CCACAGCTCGTGTGAGCAGCATAGTGCATCTACGTTCTGAC
*
57530339 CCATAGCTCGTGTGAGCA
1 CCACAGCTCGTGTGAGCA
57530357 TTCCGATTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (41 bp):
CCACAGCTCGTGTGAGCAGCATAGTGCATCTACGTTCTGAC
Found at i:57530380 original size:25 final size:25
Alignment explanation
Indices: 57530343--57530410 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
57530333 TCTGACCCAT
* * *
57530343 AGCTCGTGTGAGCATTCCGATTTAC
1 AGCTCGTGAGAGCATACCGATCTAC
57530368 AGCTCGTGAGAGCATACCGATCTAC
1 AGCTCGTGAGAGCATACCGATCTAC
* * *
57530393 AGCTTGAGTGAGCATACC
1 AGCTCGTGAGAGCATACC
57530411 TATTCATAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (25 bp):
AGCTCGTGAGAGCATACCGATCTAC
Found at i:57545383 original size:59 final size:59
Alignment explanation
Indices: 57545316--57545433 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
57545306 TCTGGTTTCG
57545316 ATGAAACACCCATCAACTTAGCCTTATATGACTCTTTAGCCACGGTCTCATCTTACACC
1 ATGAAACACCCATCAACTTAGCCTTATATGACTCTTTAGCCACGGTCTCATCTTACACC
57545375 ATGAAACACCCATCAACTTAGCCTTATATGACTCTTTAGCCACGGTCTCATCTTACACC
1 ATGAAACACCCATCAACTTAGCCTTATATGACTCTTTAGCCACGGTCTCATCTTACACC
57545434 GTGTGCCTGT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.29
Consensus pattern (59 bp):
ATGAAACACCCATCAACTTAGCCTTATATGACTCTTTAGCCACGGTCTCATCTTACACC
Found at i:57553469 original size:38 final size:38
Alignment explanation
Indices: 57553426--57553550 Score: 108
Period size: 38 Copynumber: 3.0 Consensus size: 38
57553416 TTTCAAATTA
57553426 ACATGTATAACTATGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACTATGGCATATCCACTTAGCACCACGTT
57553464 ACATGTATCAA-TATGTGTAATCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTAT-AACTATG-G----C-----ATATCCACTTAGCACCACGTT
** * *
57553512 ACATGTATAACCGTGGTATATCCACTTAGAACCACGTT
1 ACATGTATAACTATGGCATATCCACTTAGCACCACGTT
57553550 A
1 A
57553551 ATGAATCAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 24
0.72 0.04 0.24
Matches are distributed among these distances:
38 33 0.46
39 3 0.04
43 1 0.01
47 3 0.04
48 31 0.44
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACTATGGCATATCCACTTAGCACCACGTT
Found at i:57553498 original size:48 final size:47
Alignment explanation
Indices: 57553443--57553602 Score: 187
Period size: 38 Copynumber: 3.6 Consensus size: 47
57553433 TAACTATGGC
*
57553443 ATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGT
1 ATATCCACTTAGCACCACGTTACATGTATCAATAT-TGTAACCGTGGT
57553491 ATATCCACTTAGCACCACGTTACATG------TA---TAACCGTGGT
1 ATATCCACTTAGCACCACGTTACATGTATCAATATTGTAACCGTGGT
* * *
57553529 ATATCCACTTAGAACCACGTTA-ATGAATCAATATATGTAACCGTGGC
1 ATATCCACTTAGCACCACGTTACATGTATCAATAT-TGTAACCGTGGT
*
57553576 ATATCTACTTAGCACCACGTTACATGT
1 ATATCCACTTAGCACCACGTTACATGT
57553603 TTAATCGAGA
Statistics
Matches: 95, Mismatches: 6, Indels: 22
0.77 0.05 0.18
Matches are distributed among these distances:
37 3 0.03
38 30 0.32
42 2 0.02
43 2 0.02
47 29 0.31
48 29 0.31
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (47 bp):
ATATCCACTTAGCACCACGTTACATGTATCAATATTGTAACCGTGGT
Found at i:57553590 original size:85 final size:86
Alignment explanation
Indices: 57553426--57553602 Score: 266
Period size: 85 Copynumber: 2.1 Consensus size: 86
57553416 TTTCAAATTA
* * * * * *
57553426 ACATGTATAACTATGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGT
1 ACATGTATAACCATGGCATATCCACTTAGAACCACGTTACATGAATCAATATATGTAACCGTGGC
57553491 ATATCCACTTAGCACCACGTT
66 ATATCCACTTAGCACCACGTT
* *
57553512 ACATGTATAACCGTGGTATATCCACTTAGAACCACGTTA-ATGAATCAATATATGTAACCGTGGC
1 ACATGTATAACCATGGCATATCCACTTAGAACCACGTTACATGAATCAATATATGTAACCGTGGC
*
57553576 ATATCTACTTAGCACCACGTT
66 ATATCCACTTAGCACCACGTT
57553597 ACATGT
1 ACATGT
57553603 TTAATCGAGA
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 47 0.57
86 35 0.43
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (86 bp):
ACATGTATAACCATGGCATATCCACTTAGAACCACGTTACATGAATCAATATATGTAACCGTGGC
ATATCCACTTAGCACCACGTT
Found at i:57560252 original size:18 final size:18
Alignment explanation
Indices: 57560229--57560264 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
57560219 CATACATAAA
57560229 CCCTAACTCAAAATATGG
1 CCCTAACTCAAAATATGG
57560247 CCCTAACTCAAAATATGG
1 CCCTAACTCAAAATATGG
57560265 GTAGAAATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.11, T:0.22
Consensus pattern (18 bp):
CCCTAACTCAAAATATGG
Found at i:57582950 original size:8 final size:8
Alignment explanation
Indices: 57582937--57582961 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
57582927 TTTTAAATGA
57582937 TATTTTAT
1 TATTTTAT
57582945 TATTTTAT
1 TATTTTAT
57582953 TATTTTAT
1 TATTTTAT
57582961 T
1 T
57582962 TAGTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:57585124 original size:46 final size:46
Alignment explanation
Indices: 57585052--57585225 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 46
57585042 TTCTGAAATG
* *
57585052 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACAGGACATA
* * * *
57585098 AAAT-ATGTAAGACCATGGTTGAAAGATACCGTGGCAA-TGTAACATG
1 AAATGA-GTAAGACCATGGTTGAAAGATACCATGGCAACAG-GACATA
** ** *
57585144 AAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACAGGACATA
* *
57585190 AAATGAGTAAGACCATAGTTGAAAGATACTATGGCA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
57585226 TCATGTCAAA
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 1 0.01
46 104 0.98
47 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACAGGACATA
Found at i:57585531 original size:16 final size:17
Alignment explanation
Indices: 57585510--57585542 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
57585500 ATGATGGAGC
57585510 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
57585526 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
57585543 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:57586522 original size:24 final size:24
Alignment explanation
Indices: 57586495--57586542 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
57586485 ACCAGCTATA
57586495 GAACCCACGAAACGGGTTCATAGG
1 GAACCCACGAAACGGGTTCATAGG
57586519 GAACCCACGAAACGGGTTCATAGG
1 GAACCCACGAAACGGGTTCATAGG
57586543 TTAAGTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.29, T:0.12
Consensus pattern (24 bp):
GAACCCACGAAACGGGTTCATAGG
Found at i:57589965 original size:48 final size:48
Alignment explanation
Indices: 57589907--57590000 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
57589897 TACAAAAAAG
57589907 TTCAGATAAAAATTTTGAATTGTCTCATTCACAAACTAAGCTTTTAAA
1 TTCAGATAAAAATTTTGAATTGTCTCATTCACAAACTAAGCTTTTAAA
* *
57589955 TTCAGGTAAAACTTTTGAATTGTCTCATTCACAAACTAAGCTTTTA
1 TTCAGATAAAAATTTTGAATTGTCTCATTCACAAACTAAGCTTTTA
57590001 CCATTTATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (48 bp):
TTCAGATAAAAATTTTGAATTGTCTCATTCACAAACTAAGCTTTTAAA
Found at i:57593313 original size:25 final size:25
Alignment explanation
Indices: 57593240--57593314 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 25
57593230 CCTAATACCA
*
57593240 ACCCAACACCCAAACAAACCCCAATT
1 ACCCAAAACCCAAACAAA-CCCAATT
57593266 ACCCAAAACCCAAAACAAACCCAATT
1 ACCCAAAACCC-AAACAAACCCAATT
*
57593292 -CCCTAAAACCCAAACAAGCCCAA
1 ACCC-AAAACCCAAACAAACCCAA
57593315 CGAAACTCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
25 14 0.31
26 24 0.53
27 7 0.16
ACGTcount: A:0.49, C:0.43, G:0.01, T:0.07
Consensus pattern (25 bp):
ACCCAAAACCCAAACAAACCCAATT
Found at i:57597633 original size:40 final size:40
Alignment explanation
Indices: 57597587--57597812 Score: 366
Period size: 40 Copynumber: 5.7 Consensus size: 40
57597577 GCAAACACAT
* * * *
57597587 TTGCCTTCAGGTTTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
57597627 TTGCCTTCGGGTCTTAGCCCGGATATATCATC-CTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTC-GCATAA
*
57597667 TTGCCTTCGGGTCATAGCCC-GATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
57597706 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
57597746 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
57597786 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
57597813 ATCCAATGTT
Statistics
Matches: 173, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 36 0.21
40 137 0.79
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:57597703 original size:79 final size:80
Alignment explanation
Indices: 57597604--57597812 Score: 359
Period size: 79 Copynumber: 2.6 Consensus size: 80
57597594 CAGGTTTTAA
* *
57597604 CCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCATC-CTGCATAAT
1 CCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC-GCATAAT
57597668 TGCCTTCGGGTCATAG
65 TGCCTTCGGGTCATAG
*
57597684 CCC-GATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAATT
1 CCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATT
*
57597748 GCCTTCGGGTCTTAG
66 GCCTTCGGGTCATAG
57597763 CCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATA
1 CCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATA
57597813 ATCCAATGTT
Statistics
Matches: 122, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
79 73 0.60
80 49 0.40
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (80 bp):
CCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATT
GCCTTCGGGTCATAG
Found at i:57597763 original size:119 final size:120
Alignment explanation
Indices: 57597587--57597812 Score: 366
Period size: 119 Copynumber: 1.9 Consensus size: 120
57597577 GCAAACACAT
*
57597587 TTGCCTTCAGGTTTTAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCAGGTCTTAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
*
57597652 TATCATC-CTGCATAATTGCCTTCGGGTCATAGCCC-GATATATCAACTCGCATAA
66 TATCAACTC-GCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
* * * *
57597706 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCAGGTCTTAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
*
57597771 TATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATA
66 TATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATA
57597813 ATCCAATGTT
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
119 91 0.93
120 7 0.07
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (120 bp):
TTGCCTTCAGGTCTTAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
Found at i:57653653 original size:43 final size:43
Alignment explanation
Indices: 57653605--57653707 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
57653595 TTGGTTTTCA
57653605 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
57653648 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
57653691 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
57653708 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:57653724 original size:29 final size:29
Alignment explanation
Indices: 57653689--57653769 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 29
57653679 GTTGTGAGAT
* *
57653689 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
57653718 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
57653747 TGGCACTAAGTGTGCGTAGTTGA
1 TGGCACTAAGTGTGCG-AGTTGA
57653770 TTATTAAGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 5 0.11
29 36 0.78
30 5 0.11
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:57654337 original size:40 final size:40
Alignment explanation
Indices: 57654077--57654318 Score: 344
Period size: 40 Copynumber: 6.0 Consensus size: 40
57654067 TTGAATGATG
* * *
57654077 TCCGGGATAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * *
57654117 TCCGGACTAAGTTCCGAAGAGCATTTGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
57654157 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
57654197 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
57654237 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
57654277 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
57654317 TC
1 TC
57654319 TGTGCTAAAC
Statistics
Matches: 187, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 172 0.92
41 7 0.04
42 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Done.