Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 179 of 253
Found at i:58372022 original size:43 final size:43
Alignment explanation
Indices: 58371927--58372049 Score: 129
Period size: 43 Copynumber: 2.9 Consensus size: 43
58371917 ATTTTGGTTC
** * * *
58371927 ATCCAATGATGCACTGTATGTGCCAGTATATTTTCTTTGATTT
1 ATCCAATGATAAACTATGTGTGCCAGTATATTTTCTTAGATTT
* ** * *
58371970 CTCCAATGATGTACTATGTGTGCTAGTATATTTTCTTAGGTTT
1 ATCCAATGATAAACTATGTGTGCCAGTATATTTTCTTAGATTT
* * *
58372013 ATTCGATGATAAATTATGTGTGCCAGTATATTTTCTT
1 ATCCAATGATAAACTATGTGTGCCAGTATATTTTCTT
58372050 CGACTTGTCT
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.24, C:0.14, G:0.17, T:0.46
Consensus pattern (43 bp):
ATCCAATGATAAACTATGTGTGCCAGTATATTTTCTTAGATTT
Found at i:58372077 original size:86 final size:87
Alignment explanation
Indices: 58371945--58372120 Score: 194
Period size: 86 Copynumber: 2.0 Consensus size: 87
58371935 ATGCACTGTA
* * * * * * *
58371945 TGTGCCAGTATATTTTCTTTGATTTCTCCAATGATGTACTATGTGTGCTAGTATATTTTC-TTAG
1 TGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTATGTGTGCCAATATAATTACATT-G
*
58372009 GTTTATTCGATGATA-AATTATG
65 GTTTATCCGATGATACAATTATG
* *** * *
58372031 TGTGCCAGTATATTTTCTTCGACTTGTCTGTTGATGCATTGTGTGTGCCAATATAATTACATTGG
1 TGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTATGTGTGCCAATATAATTACATTGG
*
58372096 TTTATCCGATGATACACTTATG
66 TTTATCCGATGATACAATTATG
58372118 TGT
1 TGT
58372121 CAATGTGATT
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
86 62 0.85
87 11 0.15
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.45
Consensus pattern (87 bp):
TGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTATGTGTGCCAATATAATTACATTGG
TTTATCCGATGATACAATTATG
Found at i:58376808 original size:30 final size:30
Alignment explanation
Indices: 58376751--58376808 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
58376741 TTTTTGAACC
**
58376751 TAGGGGAAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGAAAAATGGTCATTTTACCAAAGTT
* * *
58376781 TAGGGGCATAATGGTCGTTTTACCAAAG
1 TAGGGGAAAAATGGTCATTTTACCAAAG
58376809 ATATGAATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAATGGTCATTTTACCAAAGTT
Found at i:58377329 original size:46 final size:46
Alignment explanation
Indices: 58377152--58377360 Score: 191
Period size: 46 Copynumber: 4.5 Consensus size: 46
58377142 TGTGTGAGCT
* * * *
58377152 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGA-GATGTA-AGTC
* * * *
58377198 TGTGTAAGACCATGTCTGGGATATGGCATCAG-TATTGAAATG--AGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTA-CGAGATGTAAGT-C
*
58377245 TAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGACGTAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGATGTAAGTC
*
58377292 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGT--GTT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGTAAGTC
58377336 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
58377361 GTATCGGCAC
Statistics
Matches: 137, Mismatches: 14, Indels: 25
0.78 0.08 0.14
Matches are distributed among these distances:
44 11 0.08
45 17 0.12
46 58 0.42
47 29 0.21
48 21 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGTAAGTC
Found at i:58379489 original size:40 final size:40
Alignment explanation
Indices: 58379445--58379672 Score: 379
Period size: 40 Copynumber: 5.7 Consensus size: 40
58379435 GCTACTTGCT
58379445 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
58379485 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
58379525 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
58379565 CAAATGCCTTCGAGACTTAGCCTGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
58379605 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
58379644 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
58379673 CATCCGAATA
Statistics
Matches: 176, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.19
40 141 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:58383158 original size:436 final size:436
Alignment explanation
Indices: 58382335--58383195 Score: 1479
Period size: 436 Copynumber: 2.0 Consensus size: 436
58382325 CTACGGAGGA
* ** * *
58382335 TGACATAGAGAGTAACATGTTGGCTTTCACTGAAGGGACTGTGCCAATTGAGGGTGAGCCCGTGA
1 TGACATAGAGAGTAACACGCCGGCTCTCACTGAAGGGACTGAGCCAATTGAGGGTGAGCCCGTGA
* * *
58382400 CTATGGGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTTAGTACACAGAG
66 CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAG
*
58382465 TTCATTCGTGCGAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
131 TTCATTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
* *
58382530 AGCTCCACAAGGAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATTCGAAAGCAAG
196 AGCTCCACAAGAAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAG
*
58382595 AGGCCCAGGAATTTCGAGCCAAAATAGATGATGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
261 AGGCCCAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
* *
58382660 ACCATCAGAGTATTTGATGAACTATCATACACGTCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
326 ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
*
58382725 CCTATGAGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGC
391 CCTACGAGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGC
* *
58382771 TGACGTAGAGAGTAACACGCCGGCTCTCACTGAAGGGACTGAGCCAGTTGAGGGTGAGCCCGTGA
1 TGACATAGAGAGTAACACGCCGGCTCTCACTGAAGGGACTGAGCCAATTGAGGGTGAGCCCGTGA
*
58382836 CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACGGAG
66 CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAG
* *
58382901 TTCGTTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCTAATTCCTCAGTATGCTCCCGT
131 TTCATTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
* * *
58382966 AGCTCCATAAGAAGTAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCGGAAGCAAG
196 AGCTCCACAAGAAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAG
* * *
58383031 GGGTCGAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
261 AGGCCCAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
*
58383096 ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGTAGTGTCACT
326 ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
58383161 CCTACGAGACTCGGCCTACCAATGATGGAATACTT
391 CCTACGAGACTCGGCCTACCAATGATGGAATACTT
58383196 TCATGTCCGT
Statistics
Matches: 398, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
436 398 1.00
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (436 bp):
TGACATAGAGAGTAACACGCCGGCTCTCACTGAAGGGACTGAGCCAATTGAGGGTGAGCCCGTGA
CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAG
TTCATTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
AGCTCCACAAGAAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAG
AGGCCCAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
CCTACGAGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGC
Found at i:58384922 original size:17 final size:17
Alignment explanation
Indices: 58384900--58384934 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
58384890 CCTCCTCACA
58384900 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
58384917 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
58384934 C
1 C
58384935 ATGTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.37, G:0.29, T:0.00
Consensus pattern (17 bp):
CGGGCAGACAACACAGC
Found at i:58398800 original size:30 final size:30
Alignment explanation
Indices: 58398742--58398800 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
58398732 ATTTTCGAGC
* **
58398742 CTAGGGGAAAAATGGTTATTTTGTCAAAGT
1 CTAGGGGAAAAATGGTCATTTTACCAAAGT
* *
58398772 CTAGGGGCAAAATGGTCGTTTTACCAAAG
1 CTAGGGGAAAAATGGTCATTTTACCAAAG
58398801 ATATGAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (30 bp):
CTAGGGGAAAAATGGTCATTTTACCAAAGT
Found at i:58399271 original size:46 final size:46
Alignment explanation
Indices: 58399139--58399355 Score: 187
Period size: 46 Copynumber: 4.7 Consensus size: 46
58399129 TGTGTGAGCT
* * *
58399139 AGTGTAAGACATGTCTAGGACATGCATCGGCCAT--ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-GACGTA-AGCC
* * * * *
58399185 AGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGAGACG-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGCC
* *
58399233 AGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
* * *
58399279 AGTGTAAGACATGCCTGGGACATGCATCGG-CTACGAGATGT-A-TC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGCC
58399323 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
58399356 ACAGATATGC
Statistics
Matches: 142, Mismatches: 20, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 66 0.46
47 26 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
Found at i:58404449 original size:27 final size:28
Alignment explanation
Indices: 58404410--58404464 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 28
58404400 TGAAGGATAT
*
58404410 AAAAATACTTAAATTTAT-TT-TAAATA
1 AAAAATACTTAAAATTATGTTGTAAATA
*
58404436 AAAAATATTATAAAATTATGTTGTAAATA
1 AAAAATACT-TAAAATTATGTTGTAAATA
58404465 TTGATTTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.33
27 8 0.33
28 2 0.08
29 6 0.25
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40
Consensus pattern (28 bp):
AAAAATACTTAAAATTATGTTGTAAATA
Found at i:58406079 original size:25 final size:24
Alignment explanation
Indices: 58406035--58406083 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
58406025 AATTTAAATT
*
58406035 TTATATTAATATGAAGTAAATATAA
1 TTATATTAATATGAAATAAA-ATAA
*
58406060 TTATATTAATATTAAATAAAATAA
1 TTATATTAATATGAAATAAAATAA
58406084 AAATCCCCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (24 bp):
TTATATTAATATGAAATAAAATAA
Found at i:58431721 original size:436 final size:436
Alignment explanation
Indices: 58430898--58431758 Score: 1479
Period size: 436 Copynumber: 2.0 Consensus size: 436
58430888 CTACGGAGGA
* ** * *
58430898 TGACATAGAGAGTAACATGTTGGCTTTCACTGAAGGGACTGTGCCAATTGAGGGTGAGCCCGTGA
1 TGACATAGAGAGTAACACGCCGGCTCTCACTGAAGGGACTGAGCCAATTGAGGGTGAGCCCGTGA
* * *
58430963 CTATGGGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTTAGTACACAGAG
66 CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAG
*
58431028 TTCATTCGTGCGAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
131 TTCATTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
* *
58431093 AGCTCCACAAGGAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATTCGAAAGCAAG
196 AGCTCCACAAGAAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAG
*
58431158 AGGCCCAGGAATTTCGAGCCAAAATAGATGATGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
261 AGGCCCAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
* *
58431223 ACCATCAGAGTATTTGATGAACTATCATACACGTCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
326 ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
*
58431288 CCTATGAGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGC
391 CCTACGAGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGC
* *
58431334 TGACGTAGAGAGTAACACGCCGGCTCTCACTGAAGGGACTGAGCCAGTTGAGGGTGAGCCCGTGA
1 TGACATAGAGAGTAACACGCCGGCTCTCACTGAAGGGACTGAGCCAATTGAGGGTGAGCCCGTGA
*
58431399 CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACGGAG
66 CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAG
* *
58431464 TTCGTTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCTAATTCCTCAGTATGCTCCCGT
131 TTCATTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
* * *
58431529 AGCTCCATAAGAAGTAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCGGAAGCAAG
196 AGCTCCACAAGAAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAG
* * *
58431594 GGGTCGAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
261 AGGCCCAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
*
58431659 ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGTAGTGTCACT
326 ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
58431724 CCTACGAGACTCGGCCTACCAATGATGGAATACTT
391 CCTACGAGACTCGGCCTACCAATGATGGAATACTT
58431759 TCATGTCCGT
Statistics
Matches: 398, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
436 398 1.00
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (436 bp):
TGACATAGAGAGTAACACGCCGGCTCTCACTGAAGGGACTGAGCCAATTGAGGGTGAGCCCGTGA
CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAG
TTCATTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
AGCTCCACAAGAAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAG
AGGCCCAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
CCTACGAGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGC
Found at i:58433487 original size:17 final size:17
Alignment explanation
Indices: 58433465--58433499 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
58433455 CCTCCTCACA
58433465 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
58433482 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
58433499 C
1 C
58433500 ATGTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.37, G:0.29, T:0.00
Consensus pattern (17 bp):
CGGGCAGACAACACAGC
Found at i:58447412 original size:30 final size:30
Alignment explanation
Indices: 58447354--58447412 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
58447344 ATTTTCGAGC
* **
58447354 CTAGGGGAAAAATGGTTATTTTGTCAAAGT
1 CTAGGGGAAAAATGGTCATTTTACCAAAGT
* *
58447384 CTAGGGGCAAAATGGTCGTTTTACCAAAG
1 CTAGGGGAAAAATGGTCATTTTACCAAAG
58447413 ATATGAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (30 bp):
CTAGGGGAAAAATGGTCATTTTACCAAAGT
Found at i:58447888 original size:46 final size:46
Alignment explanation
Indices: 58447756--58447972 Score: 187
Period size: 46 Copynumber: 4.7 Consensus size: 46
58447746 TGTGTGAGCT
* * *
58447756 AGTGTAAGACATGTCTAGGACATGCATCGGCCAT--ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-GACGTA-AGCC
* * * * *
58447802 AGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGAGACG-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGCC
* *
58447850 AGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
* * *
58447896 AGTGTAAGACATGCCTGGGACATGCATCGG-CTACGAGATGT-A-TC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGCC
58447940 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
58447973 ACAGATATGC
Statistics
Matches: 142, Mismatches: 20, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 66 0.46
47 26 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
Found at i:58453089 original size:27 final size:28
Alignment explanation
Indices: 58453050--58453104 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 28
58453040 TGAAGGATAT
*
58453050 AAAAATACTTAAATTTAT-TT-TAAATA
1 AAAAATACTTAAAATTATGTTGTAAATA
*
58453076 AAAAATATTATAAAATTATGTTGTAAATA
1 AAAAATACT-TAAAATTATGTTGTAAATA
58453105 TTGATTTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.33
27 8 0.33
28 2 0.08
29 6 0.25
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40
Consensus pattern (28 bp):
AAAAATACTTAAAATTATGTTGTAAATA
Found at i:58454728 original size:25 final size:24
Alignment explanation
Indices: 58454684--58454732 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
58454674 AATTTAAATT
*
58454684 TTATATTAATATGAAGTAAATATAA
1 TTATATTAATATGAAATAAA-ATAA
*
58454709 TTATATTAATATTAAATAAAATAA
1 TTATATTAATATGAAATAAAATAA
58454733 AAATCCCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (24 bp):
TTATATTAATATGAAATAAAATAA
Found at i:58456785 original size:58 final size:58
Alignment explanation
Indices: 58456706--58456835 Score: 228
Period size: 58 Copynumber: 2.3 Consensus size: 58
58456696 TAATAGAAAC
*
58456706 AAAAAC-AATTAA-GTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGAAAAATT
1 AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGAAAAATT
*
58456762 AAAAATAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGAAAAATT
1 AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGAAAAATT
58456820 AAAAACAAATTAATTT
1 AAAAACAAATTAATTT
58456836 GAAGAAATAA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
56 5 0.07
57 6 0.09
58 58 0.84
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (58 bp):
AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGAAAAATT
Found at i:58467407 original size:43 final size:43
Alignment explanation
Indices: 58467336--58467458 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 43
58467326 ACTTCGGTTC
* * * *
58467336 ATCCAATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* * *
58467379 CTCCAATGATGCACTATGTGTGCTAGTATATTTTCTTAGGTTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* *
58467422 ATTCGATGATGCACTATGTGTGCCAGTATATTTTCTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTT
58467459 CGACTTGTCT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (43 bp):
ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
Found at i:58467486 original size:86 final size:86
Alignment explanation
Indices: 58467331--58467529 Score: 191
Period size: 86 Copynumber: 2.3 Consensus size: 86
58467321 GTTATACTTC
* * * * * * *
58467331 GGTTCATCCAATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTTCTCCAATGATGCACTAT
1 GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
* * * * *
58467396 GTGTGCTAGTATATTTTCTTA
66 GTGTGCCAATATAATTACATA
* * *** * * *
58467417 GGTTTATTCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTGTCTGTTGGTGCATTGT
1 GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
*
58467482 GTGTGCCAATATAATTACATC
66 GTGTGCCAATATAATTACATA
*
58467503 GGTTTATCCGATGATACACTTATGTGT
1 GGTTTATCCGATGATGCAC-TATGTGT
58467530 CAATGTGATT
Statistics
Matches: 89, Mismatches: 23, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
86 82 0.92
87 7 0.08
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (86 bp):
GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
GTGTGCCAATATAATTACATA
Found at i:58472211 original size:30 final size:30
Alignment explanation
Indices: 58472154--58472211 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
58472144 TTTTTGAACC
**
58472154 TAGGGGAAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGAAAAATGGTCATTTTACCAAAGTT
* *
58472184 TAGGGGCAAAATGGTCGTTTTACCAAAG
1 TAGGGGAAAAATGGTCATTTTACCAAAG
58472212 ATATGAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (30 bp):
TAGGGGAAAAATGGTCATTTTACCAAAGTT
Found at i:58472606 original size:46 final size:44
Alignment explanation
Indices: 58472548--58472757 Score: 149
Period size: 46 Copynumber: 4.6 Consensus size: 44
58472538 TCACTTGTGT
*
58472548 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GA
* * * *
58472594 GAGCCAGTGTAAGACCATGTTTGGGATATGTCATCGG--TATTGAAACAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCCATT---A-GA
* * * *
58472642 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGTAGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTAG-A
* * *
58472689 -AGTCAGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGA
* *
58472731 TGTGTCAGTGTAAGAGCATGTCTGGGA
1 -GAGCCAGTGTAAGA-CATGTCTGGGA
58472758 TATGGTATCG
Statistics
Matches: 129, Mismatches: 22, Indels: 27
0.72 0.12 0.15
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 12 0.09
45 15 0.12
46 48 0.37
47 28 0.22
48 20 0.16
50 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGA
Found at i:58475227 original size:435 final size:435
Alignment explanation
Indices: 58474411--58475264 Score: 1467
Period size: 435 Copynumber: 2.0 Consensus size: 435
58474401 GAGGATGACA
58474411 TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
1 TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
* * *
58474476 GGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTTAGTACACAGAGTTCAT
66 AGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCAAAATGATGGATGCTAAGTACACAGAGTTCAT
*
58474541 TCATGCGAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
131 TCATGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
*
58474606 CACAAGGAGCAGACATGTTTAGAAGGGAGAAACCTCGATAGACAAGATTCGGAAGCAAGAGGCCG
196 CACAAGGAGCAGACATGTTTAGAAGGGAGAAACCTCGATAGACAAGATTCGAAAGCAAGAGGCCG
*
58474671 AGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAATACCATC
261 AGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCATC
*
58474736 AGAGTATTTGATGAACTATCATACACACCTGAAGAGTGCGTGAAGTGTGCAGTGTCACAACTACG
326 AGAGAATTTGATGAACTATCATACACACCTGAAGAGTGCGTGAAGTGTGCAGTGTCACAACTACG
58474801 AGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGCTAACG
391 AGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGCTAACG
* *
58474846 TAGAGAGTAACATGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGTCCGTGACTATG
1 TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
* * *
58474911 AGCCAAGATGGAGGGGCTAGAGAAGCCTACCTCAAAATGATGGATGCTAAGTACACGGAGTTCGT
66 AGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCAAAATGATGGATGCTAAGTACACAGAGTTCAT
* * * * * *
58474976 TCGTGCAAATCCAGACACTCCGCCTCCCCTATCTCCTCTAATTCCTCAGTATGCTCCCGTAGCTC
131 TCATGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
*
58475041 CACAAGGAGCAGACATGTTTAG-AGGGAGAAACCTCCGATAGACAAGATTCGAAAGCAAGGGGCC
196 CACAAGGAGCAGACATGTTTAGAAGGGAGAAACCT-CGATAGACAAGATTCGAAAGCAAGAGGCC
*
58475105 GAGGAATTTCGAGCCAAAATAGATGATGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCAT
260 GAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCAT
* * **
58475170 CAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGTAGTGTCACTCCTAC
325 CAGAGAATTTGATGAACTATCATACACACCTGAAGAGTGCGTGAAGTGTGCAGTGTCACAACTAC
*
58475235 GAGACTTGGCCTACCAATGATGGAATACTT
390 GAGACTCGGCCTACCAATGATGGAATACTT
58475265 TCGTGTCCAT
Statistics
Matches: 393, Mismatches: 25, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
434 12 0.03
435 381 0.97
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (435 bp):
TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
AGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCAAAATGATGGATGCTAAGTACACAGAGTTCAT
TCATGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
CACAAGGAGCAGACATGTTTAGAAGGGAGAAACCTCGATAGACAAGATTCGAAAGCAAGAGGCCG
AGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCATC
AGAGAATTTGATGAACTATCATACACACCTGAAGAGTGCGTGAAGTGTGCAGTGTCACAACTACG
AGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGCTAACG
Found at i:58476995 original size:17 final size:17
Alignment explanation
Indices: 58476973--58477007 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
58476963 CCTCCTCACA
58476973 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
58476990 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
58477007 C
1 C
58477008 ATGTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.37, G:0.29, T:0.00
Consensus pattern (17 bp):
CGGGCAGACAACACAGC
Found at i:58489889 original size:30 final size:30
Alignment explanation
Indices: 58489831--58489889 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
58489821 ATTTTCGAGC
* **
58489831 CTAGGGGAAAAATGGTTATTTTGTCAAAGT
1 CTAGGGGAAAAATGGTCATTTTACCAAAGT
* *
58489861 CTAGGGGCAAAATGGTCGTTTTACCAAAG
1 CTAGGGGAAAAATGGTCATTTTACCAAAG
58489890 ATATGAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (30 bp):
CTAGGGGAAAAATGGTCATTTTACCAAAGT
Found at i:58490366 original size:46 final size:45
Alignment explanation
Indices: 58490228--58490447 Score: 158
Period size: 46 Copynumber: 4.8 Consensus size: 45
58490218 TCACTTGTGT
* * * ** *
58490228 GAGCTAGTGTAAGACATGTCTAGGACATGCATTGGCCATATTATGA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGTCC-TAAGACGA
* * * *
58490274 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGTCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGTC-CTAAGACGA
* * *
58490322 GTGCTAGTGTAAGACATGTCTAGGACATGCATCATCCTCAAGACGTA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGTCCT-AAGACG-A
* * * *
58490369 -AGCCAGTGTAAGACATGCCTGGGACATGCATCG-GCTACGA-GA
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGTCCTAAGACGA
* * *
58490411 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -GAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCG
58490448 GCACAGATAT
Statistics
Matches: 138, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 14 0.10
45 16 0.12
46 59 0.43
47 25 0.18
48 22 0.16
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTAGGACATGCATCGTCCTAAGACGA
Found at i:58495523 original size:27 final size:28
Alignment explanation
Indices: 58495484--58495538 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 28
58495474 TGAAGGATAT
*
58495484 AAAAATACTTAAATTTAT-TT-TAAATA
1 AAAAATACTTAAAATTATGTTGTAAATA
*
58495510 AAAAATATTATAAAATTATGTTGTAAATA
1 AAAAATACT-TAAAATTATGTTGTAAATA
58495539 TTGATTTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.33
27 8 0.33
28 2 0.08
29 6 0.25
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40
Consensus pattern (28 bp):
AAAAATACTTAAAATTATGTTGTAAATA
Found at i:58497162 original size:25 final size:24
Alignment explanation
Indices: 58497118--58497166 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
58497108 AATTTAAATT
*
58497118 TTATATTAATATGAAGTAAATATAA
1 TTATATTAATATGAAATAAA-ATAA
*
58497143 TTATATTAATATTAAATAAAATAA
1 TTATATTAATATGAAATAAAATAA
58497167 AAATCCCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (24 bp):
TTATATTAATATGAAATAAAATAA
Found at i:58499218 original size:58 final size:58
Alignment explanation
Indices: 58499139--58499268 Score: 203
Period size: 58 Copynumber: 2.3 Consensus size: 58
58499129 TAATAGAAAC
* *
58499139 AAAAAC-AATTAA-GTTTAGCTTATAATTGATGGCAATTTTTTAAATTTT-GAAAAATT
1 AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTAG-AAAATT
*
58499195 AAAAATAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTAGAAAATT
1 AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTAGAAAATT
58499253 AAAAACAAATTAATTT
1 AAAAACAAATTAATTT
58499269 GAAGAAATAA
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
56 5 0.07
57 6 0.09
58 55 0.82
59 1 0.01
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (58 bp):
AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTAGAAAATT
Found at i:58520463 original size:21 final size:20
Alignment explanation
Indices: 58520425--58520464 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
58520415 TTCTTGAAAC
*
58520425 AGGGCACACGCTCATGTGGA
1 AGGGCACACACTCATGTGGA
*
58520445 AGGGCAACACACTCGTGTGG
1 AGGGC-ACACACTCATGTGG
58520465 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.15
Consensus pattern (20 bp):
AGGGCACACACTCATGTGGA
Found at i:58521846 original size:48 final size:47
Alignment explanation
Indices: 58521635--58521905 Score: 203
Period size: 48 Copynumber: 5.7 Consensus size: 47
58521625 GGGTGTAATA
* * * * **
58521635 CCGATGCCATGTCCCAAACATGGTCTTACACT-AGCTCATCCATCAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACCTCTATCGTG
* * * * *** * *
58521682 TCGATGCCATGTCCCAGACATGATCTTACACTGATTATCGAAATTGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACCTCTATCG-TG
* * * * *
58521731 CTGACGCCATGTCCCAAACATGGTCTTACACT-AGCTCTCACATATCCGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-CTC-TAT-CGTG
*
58521781 CCGATGCCATGTCCCAGACATGGCCTTACACTGACACCTCTATACGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTAT-CGTG
*
58521829 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC--TCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATCGT-G
* *
58521875 TCGATG-CATGTCCCAGACAT-GTCTTATACTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTG
58521906 GCTTACATCT
Statistics
Matches: 178, Mismatches: 39, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
44 10 0.06
45 17 0.10
46 7 0.04
47 29 0.16
48 49 0.28
49 31 0.17
50 33 0.19
51 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATCGTG
Found at i:58521926 original size:46 final size:44
Alignment explanation
Indices: 58521780--58521953 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 44
58521770 ACATATCCGT
* * *
58521780 GCCGATGCCATGTCCCAGACATGGCCTTACACTGACACCTCTATACGT-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACATC--T-CGTA
*
58521828 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACATCTCGTA
* * *
58521874 GTCGATGCATGTCCCAGACATGTCTTATACTGGCTTACATCTTG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC--ACATCTCGTA
* *
58521919 GGCCGATGCATATTCCAGACATGTCTTACACTGGC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGC
58521954 GCACAAATGA
Statistics
Matches: 112, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
44 11 0.10
45 18 0.16
46 44 0.39
48 39 0.35
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACATCTCGTA
Found at i:58522678 original size:13 final size:13
Alignment explanation
Indices: 58522660--58522686 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
58522650 CTAAAAGTAC
58522660 AAAAATCATCAAG
1 AAAAATCATCAAG
58522673 AAAAATCATCAAG
1 AAAAATCATCAAG
58522686 A
1 A
58522687 TCACTACTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.15, G:0.07, T:0.15
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:58535468 original size:50 final size:50
Alignment explanation
Indices: 58535387--58535489 Score: 161
Period size: 50 Copynumber: 2.1 Consensus size: 50
58535377 CAAAGTATTA
* * * * *
58535387 TTTATTATTTATATCAATTTTTTTATTAATGTATTTGTTATATAATTTGT
1 TTTATTATTTATATCAAATTTTTAATAAATGTATTTGTTACATAATTTAT
58535437 TTTATTATTTATATCAAATTTTTAATAAATGTATTTGTTACATAATTTAT
1 TTTATTATTTATATCAAATTTTTAATAAATGTATTTGTTACATAATTTAT
58535487 TTT
1 TTT
58535490 TCGCGTATGT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (50 bp):
TTTATTATTTATATCAAATTTTTAATAAATGTATTTGTTACATAATTTAT
Found at i:58536495 original size:20 final size:20
Alignment explanation
Indices: 58536470--58536509 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
58536460 CTTAAACTCC
58536470 TCTCACTTACATCCATATTA
1 TCTCACTTACATCCATATTA
*
58536490 TCTCACTTACATTCATATTA
1 TCTCACTTACATCCATATTA
58536510 ATCATTCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.42
Consensus pattern (20 bp):
TCTCACTTACATCCATATTA
Found at i:58540353 original size:17 final size:17
Alignment explanation
Indices: 58540331--58540365 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
58540321 GATTAAATGA
58540331 TAACTTAGTCATGACAT
1 TAACTTAGTCATGACAT
58540348 TAACTTAGTCATGACAT
1 TAACTTAGTCATGACAT
58540365 T
1 T
58540366 TATGTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (17 bp):
TAACTTAGTCATGACAT
Found at i:58560337 original size:29 final size:28
Alignment explanation
Indices: 58560303--58560491 Score: 144
Period size: 29 Copynumber: 6.5 Consensus size: 28
58560293 TTGATTGTCA
*
58560303 ATTATGAAAAGGGATGGTGACGACCATCG
1 ATTATGAAAAGGGATGGT-TCGACCATCG
* * * * *
58560332 AATATGAAAAGGGATAGCTTTGGCTATCG
1 ATTATGAAAAGGGAT-GGTTCGACCATCG
* * * *
58560361 ATTATGAAAAGGGATAGCTTCGGCTATTG
1 ATTATGAAAAGGGAT-GGTTCGACCATCG
** * * * *
58560390 ATTATGAAAAATGATAGTTTTGGCTATCG
1 ATTATGAAAAGGGAT-GGTTCGACCATCG
**
58560419 ATTATGAAAAGGGATGGCGACGACCATCG
1 ATTATGAAAAGGGATGG-TTCGACCATCG
58560448 ATTAATGAAAAGGGATGGTTTCGACCATCG
1 ATT-ATGAAAAGGGATGG-TTCGACCATCG
*
58560478 AATATGAAAAGGGA
1 ATTATGAAAAGGGA
58560492 CAGTTACGAA
Statistics
Matches: 131, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
28 1 0.01
29 103 0.79
30 27 0.21
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (28 bp):
ATTATGAAAAGGGATGGTTCGACCATCG
Found at i:58560365 original size:58 final size:58
Alignment explanation
Indices: 58560277--58560491 Score: 218
Period size: 58 Copynumber: 3.7 Consensus size: 58
58560267 TCATCGACCA
* * * * *
58560277 ATGAAAAGGAATAGCTTTGATTGTCAATTATGAAAAGGGATGGTGACGACCATCGAAT
1 ATGAAAAGGGATAGCTTTGACTATCGATTATGAAAAGGGATGGTGACGACCATCGATT
* * * * * *
58560335 ATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATAGCT-TCGGCTATTGATT
1 ATGAAAAGGGATAGCTTTGACTATCGATTATGAAAAGGGAT-GGTGACGACCATCGATT
** * * *
58560393 ATGAAAAATGATAGTTTTGGCTATCGATTATGAAAAGGGATGGCGACGACCATCGATT
1 ATGAAAAGGGATAGCTTTGACTATCGATTATGAAAAGGGATGGTGACGACCATCGATT
* * *
58560451 AATGAAAAGGGAT-GGTTTCGACCATCGAATATGAAAAGGGA
1 -ATGAAAAGGGATAGCTTT-GACTATCGATTATGAAAAGGGA
58560492 CAGTTACGAA
Statistics
Matches: 127, Mismatches: 26, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
57 1 0.01
58 95 0.75
59 31 0.24
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.27
Consensus pattern (58 bp):
ATGAAAAGGGATAGCTTTGACTATCGATTATGAAAAGGGATGGTGACGACCATCGATT
Found at i:58578528 original size:26 final size:26
Alignment explanation
Indices: 58578497--58578604 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
58578487 TGAAATGCCC
*
58578497 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
58578523 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
58578549 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
58578575 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
58578601 ATCA
1 ATCA
58578605 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:58580976 original size:28 final size:28
Alignment explanation
Indices: 58580913--58581010 Score: 128
Period size: 28 Copynumber: 3.5 Consensus size: 28
58580903 ATATTAAGTC
58580913 CGCACA-TTCAGTGCTATATAATC-AACT
1 CGCACACTT-AGTGCTATATAATCAAACT
58580940 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
58580968 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
58580997 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58581011 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 20 0.31
28 25 0.39
29 19 0.30
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:58584971 original size:36 final size:36
Alignment explanation
Indices: 58584899--58584972 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
58584889 AATTTTATTT
**
58584899 TAGTAAAAACCTTAGTTTTTAGATAACAGTTGCAAA
1 TAGTAAAAACCTTAGTTTTTAGATAACAGTCACAAA
58584935 TAGTAAAAACCTTAGTTTTTAGATAACAGTCACAAA
1 TAGTAAAAACCTTAGTTTTTAGATAACAGTCACAAA
58584971 TA
1 TA
58584973 AAGTACTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.32
Consensus pattern (36 bp):
TAGTAAAAACCTTAGTTTTTAGATAACAGTCACAAA
Found at i:58590508 original size:103 final size:104
Alignment explanation
Indices: 58590329--58590581 Score: 402
Period size: 103 Copynumber: 2.4 Consensus size: 104
58590319 AACCGTTATT
* * * *
58590329 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
58590394 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
58590432 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
58590496 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* *
58590536 GGTGGATATCACACATAGCACCACCAATGAATCGGGGAATCAGCAC
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCAC
58590582 ACAACAACCC
Statistics
Matches: 138, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.59
104 54 0.39
105 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:58590955 original size:30 final size:29
Alignment explanation
Indices: 58590921--58590985 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
58590911 TAATCCACCA
58590921 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
58590951 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
58590981 CCCAA
1 CCCAA
58590986 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:58590959 original size:31 final size:30
Alignment explanation
Indices: 58590928--58590985 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
58590918 CCACCCAACT
58590928 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
58590958 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
58590986 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:58597886 original size:103 final size:104
Alignment explanation
Indices: 58597707--58597971 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
58597697 AACCGTTATT
* * * *
58597707 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
58597772 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
58597810 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
58597874 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
58597914 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
58597972 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:58598333 original size:30 final size:29
Alignment explanation
Indices: 58598299--58598363 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
58598289 TAATCCACCA
58598299 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
58598329 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
58598359 CCCAA
1 CCCAA
58598364 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:58598337 original size:31 final size:30
Alignment explanation
Indices: 58598306--58598363 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
58598296 CCACCCAACT
58598306 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
58598336 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
58598364 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:58601503 original size:17 final size:18
Alignment explanation
Indices: 58601481--58601519 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
58601471 AGGCTAATTT
58601481 GGGCGTGTAGG-CCACAC
1 GGGCGTGTAGGCCCACAC
* *
58601498 GGGCGTTTGGGCCCACAC
1 GGGCGTGTAGGCCCACAC
58601516 GGGC
1 GGGC
58601520 AGGCCACATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.13, C:0.31, G:0.44, T:0.13
Consensus pattern (18 bp):
GGGCGTGTAGGCCCACAC
Found at i:58615944 original size:15 final size:15
Alignment explanation
Indices: 58615924--58615961 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
58615914 TTACATTTCG
58615924 GGTAATTCGGTTAAT
1 GGTAATTCGGTTAAT
58615939 GGTAATTCGGTTAAT
1 GGTAATTCGGTTAAT
*
58615954 GATAATTC
1 GGTAATTC
58615962 TGTTCAGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (15 bp):
GGTAATTCGGTTAAT
Found at i:58616329 original size:19 final size:19
Alignment explanation
Indices: 58616307--58616347 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
58616297 ATTATTAAAA
*
58616307 TTATTAAAAAATATAAATT
1 TTATTAAAAAATAAAAATT
* *
58616326 TTATTTAAGAATAAAAATT
1 TTATTAAAAAATAAAAATT
58616345 TTA
1 TTA
58616348 ATAATATTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
TTATTAAAAAATAAAAATT
Found at i:58619079 original size:7 final size:8
Alignment explanation
Indices: 58619061--58619087 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
58619051 CCTAGAGACT
58619061 AAAATGTA
1 AAAATGTA
58619069 AAAATGTA
1 AAAATGTA
58619077 AAAATGTA
1 AAAATGTA
58619085 AAA
1 AAA
58619088 CTTTAGGGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (8 bp):
AAAATGTA
Found at i:58619566 original size:42 final size:42
Alignment explanation
Indices: 58619467--58619631 Score: 163
Period size: 42 Copynumber: 3.9 Consensus size: 42
58619457 TTAGGGTTAC
* * *
58619467 TGAGATTACGTGTAAGACCATATCTGGAAT-TGAAATTTATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGACATTGATA
* ** * * *
58619508 TGGGATTTTGTATAAGACCATATTTGGGATATGACATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGACATTGATA
* * * *
58619550 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATTGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGACATTGATA
* *
58619593 CT-AGATTACATGTAAGACCATATCTGGGATATGGCATTG
1 -TGAGATTACGTGTAAGACCATATCTGGGATATGACATTG
58619632 GTACAGTACC
Statistics
Matches: 100, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
41 24 0.24
42 41 0.41
43 34 0.34
44 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGACATTGATA
Found at i:58629362 original size:483 final size:484
Alignment explanation
Indices: 58628455--58629423 Score: 1823
Period size: 483 Copynumber: 2.0 Consensus size: 484
58628445 TTAACGATAT
58628455 TTTTTTTTCCTTCCCATTTTTTAAAAATTTTGTTCTTCTTTTCGTTTATATTTTTGCTGTTAACC
1 TTTTTTTTCCTTCCCATTTTTTAAAAATTTTGTTCTTCTTTTCGTTTATATTTTTGCTGTTAACC
*
58628520 AGAAATGGTGAGGGGATACGAGATTAACGAAAGTTCTTTTGTTAGTCACCGGTTAGAAGACTGTC
66 AGAAATGGTGAGGGGATACGAGATTAACGAAAGTTCTTTTGTTAGTCACCGGTCAGAAGACTGTC
*
58628585 GGTAAGTAACTGTCAATGCGAGCATCTCCGTGAATTTTCTTTCATTTTGTAAATTATTTGGAACG
131 GGTAAGTAACTGTCAATGCAAGCATCTCCGTGAATTTTCTTTCATTTTGTAAATTATTTGGAACG
58628650 GAGGATTTTTGTGAGTTTCGAGAATGTTTTCTAAACGAGTGTGTATTTACTTAGCAGGCATAGCT
196 GAGGATTTTTGTGAGTTTCGAGAATGTTTTCTAAACGAGTGTGTATTTACTTAGCAGGCATAGCT
58628715 ATTAACAGCAAGGAATAGCAAGAAGACAATCTTTGTGATTGTTGCTGAAGTTTCGGTAAGTTTGT
261 ATTAACAGCAAGGAATAGCAAGAAGACAATCTTTGTGATTGTTGCTGAAGTTTCGGTAAGTTTGT
* *
58628780 GATATCTGAAGGTTTTGTGTCGAAACTTTCGACGTGGGTATTAAGTGAGTAATCGAGAAGTTTTG
326 GACATCTGAAGGTTTCGTGTCGAAACTTTCGACGTGGGTATTAAGTGAGTAATCGAGAAGTTTTG
*
58628845 CTGATTAATTGGCTAAATTGTGTTACTGAATGCTTGTTTTAGGCTTCGAGGATCTTTAGGGTTGT
391 CTGATTAATTGGCTAAATTGTGTTACTGAATGCTTATTTTAGGCTTCGAGGATCTTTAGGGTTGT
58628910 TGTCACTTCGAAATCTTTCCAGGTGCATA
456 TGTCACTTCGAAATCTTTCCAGGTGCATA
* * *
58628939 TTTTTTTTCCTTCCTATTTTTTTAAATTTTTGTTCTTCTTTTCGTTTATATTTTTGCTGTTAACC
1 TTTTTTTTCCTTCCCATTTTTTAAAAATTTTGTTCTTCTTTTCGTTTATATTTTTGCTGTTAACC
* *
58629004 AGAAATGGTGAGGGGATACGGGATTAACGAAAGTTCTTTTGTTAGTCATCGGTCAGAAGACTGTC
66 AGAAATGGTGAGGGGATACGAGATTAACGAAAGTTCTTTTGTTAGTCACCGGTCAGAAGACTGTC
* *
58629069 -GTAAGTAACTGTCAATGCAAGCATCTCCGTGAATTTTCTTTCGTTTTGTAAATTATTTGGAATG
131 GGTAAGTAACTGTCAATGCAAGCATCTCCGTGAATTTTCTTTCATTTTGTAAATTATTTGGAACG
58629133 GAGGATTTTTGTGAGTTTCGAGAATGTTTTCTAAACGAGTGTGTATTTACTTAGCAGGCATAGCT
196 GAGGATTTTTGTGAGTTTCGAGAATGTTTTCTAAACGAGTGTGTATTTACTTAGCAGGCATAGCT
58629198 ATTAACAGCAAGGAATAGCAAGAAGACAATCTTTGTGATTGTTGCTGAAGTTTCGGTAAGTTTGT
261 ATTAACAGCAAGGAATAGCAAGAAGACAATCTTTGTGATTGTTGCTGAAGTTTCGGTAAGTTTGT
58629263 GACATCTGAAGGTTTCGTGTCGAAACTTTCGACGTGGGTATTAAGTGAGTAATCGAGAAGTTTTG
326 GACATCTGAAGGTTTCGTGTCGAAACTTTCGACGTGGGTATTAAGTGAGTAATCGAGAAGTTTTG
58629328 CTGATTAATTGGCTAAATTGTGTTACTGAATGCTTATTTTAGGCTTCGAGGATCTTTAGGGTTGT
391 CTGATTAATTGGCTAAATTGTGTTACTGAATGCTTATTTTAGGCTTCGAGGATCTTTAGGGTTGT
58629393 TGTCACTTCGAAATCTTTCCAGGTGCATA
456 TGTCACTTCGAAATCTTTCCAGGTGCATA
58629422 TT
1 TT
58629424 GGAAACCCTA
Statistics
Matches: 473, Mismatches: 12, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
483 349 0.74
484 124 0.26
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (484 bp):
TTTTTTTTCCTTCCCATTTTTTAAAAATTTTGTTCTTCTTTTCGTTTATATTTTTGCTGTTAACC
AGAAATGGTGAGGGGATACGAGATTAACGAAAGTTCTTTTGTTAGTCACCGGTCAGAAGACTGTC
GGTAAGTAACTGTCAATGCAAGCATCTCCGTGAATTTTCTTTCATTTTGTAAATTATTTGGAACG
GAGGATTTTTGTGAGTTTCGAGAATGTTTTCTAAACGAGTGTGTATTTACTTAGCAGGCATAGCT
ATTAACAGCAAGGAATAGCAAGAAGACAATCTTTGTGATTGTTGCTGAAGTTTCGGTAAGTTTGT
GACATCTGAAGGTTTCGTGTCGAAACTTTCGACGTGGGTATTAAGTGAGTAATCGAGAAGTTTTG
CTGATTAATTGGCTAAATTGTGTTACTGAATGCTTATTTTAGGCTTCGAGGATCTTTAGGGTTGT
TGTCACTTCGAAATCTTTCCAGGTGCATA
Found at i:58629894 original size:29 final size:29
Alignment explanation
Indices: 58629852--58629908 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
58629842 GTGTGCCCCA
58629852 GGCTGTGTGAGTCACACGGGCAAAGACAT
1 GGCTGTGTGAGTCACACGGGCAAAGACAT
*
58629881 GGCTGTGTGAGTCACACGGGCAAGGACA
1 GGCTGTGTGAGTCACACGGGCAAAGACA
58629909 CGACCGTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.37, T:0.16
Consensus pattern (29 bp):
GGCTGTGTGAGTCACACGGGCAAAGACAT
Found at i:58629917 original size:29 final size:29
Alignment explanation
Indices: 58629856--58629918 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
58629846 GCCCCAGGCT
* * *
58629856 GTGTGAGTCACACGGGCAAAGACATGGCT
1 GTGTGAGTCACACGGGCAAAGACACGACC
*
58629885 GTGTGAGTCACACGGGCAAGGACACGACC
1 GTGTGAGTCACACGGGCAAAGACACGACC
58629914 GTGTG
1 GTGTG
58629919 GCATCATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.22, G:0.37, T:0.16
Consensus pattern (29 bp):
GTGTGAGTCACACGGGCAAAGACACGACC
Found at i:58630401 original size:22 final size:24
Alignment explanation
Indices: 58630360--58630404 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
58630350 TAATCTGCAA
*
58630360 TATATATATATATGAGTTTGTATT
1 TATATATATAAATGAGTTTGTATT
58630384 TATATATATAAAT-A-TTTGTAT
1 TATATATATAAATGAGTTTGTAT
58630405 ACAACTAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 7 0.35
23 1 0.05
24 12 0.60
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (24 bp):
TATATATATAAATGAGTTTGTATT
Found at i:58631263 original size:75 final size:72
Alignment explanation
Indices: 58631140--58631282 Score: 164
Period size: 75 Copynumber: 1.9 Consensus size: 72
58631130 TGCAAAAGTA
* ** *
58631140 CATATATTATTTATAATAAACCCACGCATGCATACATATAATATAAAACCATTTTTTGATGCAAA
1 CATATATTATTTATAATAAACCCACACATGCATACATATAATATAAAACC-CCTTTTAATGCAAA
58631205 GATATGTT
65 GATATGTT
** *
58631213 CATATATTATTTATAATATAAACCTGCACATGCACT-CATTTAAT-TCAAAACCCCTTTTAATGC
1 CATATATTATTTAT-A-ATAAACCCACACATGCA-TACATATAATAT-AAAACCCCTTTTAATGC
58631276 AAAGATA
62 AAAGATA
58631283 CATGTATTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
73 14 0.24
74 17 0.29
75 27 0.46
76 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.35
Consensus pattern (72 bp):
CATATATTATTTATAATAAACCCACACATGCATACATATAATATAAAACCCCTTTTAATGCAAAG
ATATGTT
Found at i:58631628 original size:20 final size:20
Alignment explanation
Indices: 58631599--58631642 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
58631589 TTAAAATATA
58631599 AAATTATTTTTT--AAATTTT
1 AAATT-TTTTTTAAAAATTTT
*
58631618 TAATTTTTTTTAAAAATTTT
1 AAATTTTTTTTAAAAATTTT
58631638 AAATT
1 AAATT
58631643 AGTAAAGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 6 0.29
19 4 0.19
20 11 0.52
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
AAATTTTTTTTAAAAATTTT
Found at i:58631637 original size:19 final size:19
Alignment explanation
Indices: 58631600--58631639 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
58631590 TAAAATATAA
*
58631600 AATTATTTTTTAAATTTTT
1 AATTATTTTTTAAAATTTT
58631619 AATT-TTTTTTAAAAATTTT
1 AATTATTTTTT-AAAATTTT
58631638 AA
1 AA
58631640 ATTAGTAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
AATTATTTTTTAAAATTTT
Found at i:58632031 original size:15 final size:15
Alignment explanation
Indices: 58632011--58632040 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58632001 TTTAATCCTT
*
58632011 TATAAATTATAAAAA
1 TATAAACTATAAAAA
58632026 TATAAACTATAAAAA
1 TATAAACTATAAAAA
58632041 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:58633771 original size:24 final size:24
Alignment explanation
Indices: 58633725--58633774 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
58633715 CAAATGGCCT
58633725 GTTTTTTTTTTAATTAATGTTTTAG
1 GTTTTTTTTTT-ATTAATGTTTTAG
*
58633750 GTTTTTTTTTT-TTACATTTTTTAG
1 GTTTTTTTTTTATTA-ATGTTTTAG
58633774 G
1 G
58633775 GAAATAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 3 0.13
24 9 0.39
25 11 0.48
ACGTcount: A:0.16, C:0.02, G:0.12, T:0.70
Consensus pattern (24 bp):
GTTTTTTTTTTATTAATGTTTTAG
Found at i:58634530 original size:200 final size:206
Alignment explanation
Indices: 58634130--58634512 Score: 473
Period size: 200 Copynumber: 1.9 Consensus size: 206
58634120 TTTATATTAT
* *
58634130 TCATTATGTTAAATATATTTTATTTTTTTAAAAAAACATCAATTAATTTTTTTAGATTTTTATTT
1 TCATTATGTTAAATATATTTTATATTTTT-AAAAAACATCAATCAATTTTTTTAGATTTTTATTT
*
58634195 ATATATAATTTTTTATGTTAAATGTTTATTGTTTTCACCTACATTGTGAGTATCATAAATTCTAA
65 ATATATAATTTTTTATGTTAAATGCTTATTGTTTTCACCTACATTGTGAGTATCATAAATTCTAA
* * ** * * **
58634260 TATTATAAAAGTAACAATTTCAAATATCATTTTTTTTCACTTATATCATGGATATAATAAAAATA
130 TATAAAAAAAGTAACAATTTCAAATATCATTGATTTTCACGTAAATCATAAATATAATAAAAATA
58634325 TATTTACATATA
195 TATTTACATATA
* *
58634337 TCATTATGTTAAATATATTTTA-ATTTTT-AAAAACATCAA-CCATTTTTTTATA-TTTT-TTTA
1 TCATTATGTTAAATATATTTTATATTTTTAAAAAACATCAATCAATTTTTTTAGATTTTTATTTA
** **
58634397 TATATAA-TTTTTATGTTAAATGCTTATT-TTTTCCATGTACATTGTGAGTATTGTAAATTCTAA
66 TATATAATTTTTTATGTTAAATGCTTATTGTTTT-CACCTACATTGTGAGTATCATAAATTCTAA
*
58634460 TATAAAAAATCAATTAATC-ATTTCAAATATCATTGATTTT-A-GTAAAT-ATAAAT
130 TAT-AAAAA--AAGTAA-CAATTTCAAATATCATTGATTTTCACGTAAATCATAAAT
58634513 TTTATATGTA
Statistics
Matches: 153, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
199 4 0.03
200 53 0.35
201 18 0.12
202 5 0.03
203 34 0.22
204 12 0.08
206 5 0.03
207 22 0.14
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (206 bp):
TCATTATGTTAAATATATTTTATATTTTTAAAAAACATCAATCAATTTTTTTAGATTTTTATTTA
TATATAATTTTTTATGTTAAATGCTTATTGTTTTCACCTACATTGTGAGTATCATAAATTCTAAT
ATAAAAAAAGTAACAATTTCAAATATCATTGATTTTCACGTAAATCATAAATATAATAAAAATAT
ATTTACATATA
Found at i:58634539 original size:109 final size:111
Alignment explanation
Indices: 58634396--58634620 Score: 268
Period size: 109 Copynumber: 2.1 Consensus size: 111
58634386 ATATTTTTTT
* ** *
58634396 ATATATAATTTTTATGTTAAATGCTTATTTTTTCCATGTACATTGT-GAGTATTGTAAATTCTAA
1 ATATATAATTTTTATGTTAAATACTTATTTTTTCCACCTACATTGTAG-GTATGGTAAATTCTAA
*
58634460 TA-T-AAAAAATCAATTAATCATTTCAAATATCATTGATTTTAGTAA
65 TATTAAAAAAATCAAATAATCATTTCAAATATCATTGATTTTAGTAA
* *
58634505 ATATA-AATTTTATATG-TAAATATTTATATTTTTCCACCTACATTGTAGGTATGGTAGATTCTA
1 ATATATAATTTT-TATGTTAAATACTTAT-TTTTTCCACCTACATTGTAGGTATGGTAAATTCTA
* *
58634568 ATATTAAAAAAAATCAAATGATTATTTCAAATATCATT--TTTTATGTAA
64 ATATT-AAAAAAATCAAATAATCATTTCAAATATCATTGATTTTA-GTAA
58634616 A-ATAT
1 ATATAT
58634621 TTCAAATAAT
Statistics
Matches: 99, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
108 15 0.15
109 41 0.41
110 10 0.10
111 5 0.05
112 28 0.28
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (111 bp):
ATATATAATTTTTATGTTAAATACTTATTTTTTCCACCTACATTGTAGGTATGGTAAATTCTAAT
ATTAAAAAAATCAAATAATCATTTCAAATATCATTGATTTTAGTAA
Found at i:58635059 original size:12 final size:11
Alignment explanation
Indices: 58635032--58635063 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
58635022 TAACATGTTT
58635032 ATTAATTAAAA
1 ATTAATTAAAA
58635043 ATTAATTAAAA
1 ATTAATTAAAA
58635054 ATTTAATTAA
1 A-TTAATTAA
58635064 GAAAAAGAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.60
12 8 0.40
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
ATTAATTAAAA
Found at i:58656117 original size:40 final size:40
Alignment explanation
Indices: 58656023--58656167 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
58656013 TACTCGAATG
*
58656023 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
58656064 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
58656104 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
58656144 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
58656168 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:58664138 original size:40 final size:40
Alignment explanation
Indices: 58664044--58664188 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
58664034 TACTCGAATG
*
58664044 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
58664085 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
58664125 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
58664165 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
58664189 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:58670162 original size:24 final size:27
Alignment explanation
Indices: 58670077--58670162 Score: 72
Period size: 29 Copynumber: 3.2 Consensus size: 27
58670067 TGAAATAGTA
*
58670077 TTAAAGGA-AAATAAAATAAAAAGTACT
1 TTAAAAGATAAAT-AAATAAAAAGTACT
* *
58670104 TTAAGAAGATAAATAAAGATAAAAGTGACA
1 TTAA-AAGATAAATAAATA-AAAAGT-ACT
*
58670134 ATAAAA-AT-AATAAATAAAAAGTA-T
1 TTAAAAGATAAATAAATAAAAAGTACT
58670158 TTAAA
1 TTAAA
58670163 CATCCTCATC
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
24 4 0.08
25 1 0.02
26 6 0.12
27 11 0.23
28 9 0.19
29 12 0.25
30 5 0.10
ACGTcount: A:0.64, C:0.02, G:0.10, T:0.23
Consensus pattern (27 bp):
TTAAAAGATAAATAAATAAAAAGTACT
Found at i:58689417 original size:43 final size:43
Alignment explanation
Indices: 58689358--58689487 Score: 129
Period size: 43 Copynumber: 3.0 Consensus size: 43
58689348 GAGATATGTG
* * **
58689358 GCATCCAAGCTCGTTGAGAGG-TCTGAGTTTGTTATGGATGCGA
1 GCATCCAAGCTAGTTGAGAGGTTC-GAGCTCATTATGGATGCGA
*
58689401 GCATCCGAGCTAGTTGAGAGGTTCGAGCTCATTATGGATGCGA
1 GCATCCAAGCTAGTTGAGAGGTTCGAGCTCATTATGGATGCGA
** * * *
58689444 GCATTTGAA-CTCGTTAGAGAGGTTCGAGTTCATAATGGATGCGA
1 GCA-TCCAAGCTAGTT-GAGAGGTTCGAGCTCATTATGGATGCGA
58689488 TTCATGTAAC
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
43 43 0.59
44 30 0.41
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (43 bp):
GCATCCAAGCTAGTTGAGAGGTTCGAGCTCATTATGGATGCGA
Found at i:58689482 original size:44 final size:43
Alignment explanation
Indices: 58689391--58689487 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 43
58689381 TGAGTTTGTT
* *
58689391 ATGGATGCGAGCATCCGAGCTAGTTGAGAGGTTCGAGCTCATT
1 ATGGATGCGAGCATCCGAACTAGTTGAGAGGTTCGAGCTCATA
** * *
58689434 ATGGATGCGAGCATTTGAACTCGTTAGAGAGGTTCGAGTTCATA
1 ATGGATGCGAGCATCCGAACTAGTT-GAGAGGTTCGAGCTCATA
58689478 ATGGATGCGA
1 ATGGATGCGA
58689488 TTCATGTAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 21 0.45
44 26 0.55
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (43 bp):
ATGGATGCGAGCATCCGAACTAGTTGAGAGGTTCGAGCTCATA
Found at i:58690510 original size:21 final size:22
Alignment explanation
Indices: 58690484--58690524 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
58690474 CACTTGATAC
58690484 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
*
58690505 AGGGGCAACACGCCCTTGTG
1 AGGGGCAACACGCCCGTGTG
58690525 ACCAAATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.29, G:0.41, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:58691812 original size:46 final size:46
Alignment explanation
Indices: 58691679--58691896 Score: 191
Period size: 46 Copynumber: 4.7 Consensus size: 46
58691669 GTAAGGTGCT
* ***
58691679 GATGCCATGTCCCAGACATGGTCTTACAC-AAGCTCTAGCATATTTGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAA---CTA-CAT-CTCAAGCC
*
58691729 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAACTACATCTCA-AGCC
* **
58691775 GATG-CATGTCCCA-AGCAT-GTCTTACACTAACTTACATCTCGAGGTT
1 GATGCCATGTCCCAGA-CATGGTCTTACACTAAC-TACATCTC-AAGCC
*
58691821 GATG-CATGCCCCAGACAT-GTCTTACACTAGCACT-CATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTA--ACTACATCTCAA-GCC
58691867 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
58691897 GGCTCTCATA
Statistics
Matches: 142, Mismatches: 14, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
44 13 0.09
45 14 0.10
46 55 0.39
47 17 0.12
48 13 0.09
50 29 0.20
51 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAACTACATCTCAAGCC
Found at i:58691919 original size:94 final size:94
Alignment explanation
Indices: 58691679--58691950 Score: 292
Period size: 94 Copynumber: 2.9 Consensus size: 94
58691669 GTAAGGTGCT
* * *
58691679 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATTTGTGCCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTA-CATATATG-GTCGATG-CATGTCCCAG
58691744 ACATGGTCTTACACT-G-ACACATCTCATAGCC
63 ACAT-GTCTTACACTAGCACACATCTCATAGCC
* * * *
58691775 GATG-CATGTCCCA-AGCAT-GTCTTACACTAACT-TACATCTCGA-GGTTGATGCATGCCCCAG
1 GATGCCATGTCCCAGA-CATGGTCTTACACTAGCTCTACATAT--ATGGTCGATGCATGTCCCAG
*
58691835 ACATGTCTTACACTAGCACTCATCTCA-ATGCC
63 ACATGTCTTACACTAGCACACATCTCATA-GCC
* *
58691867 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATATGGTCGATGCACGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACAT-ATATGGTCGATGCATGTCCCAGAC
* *
58691931 ATGTCTCACACTAGCTCACA
65 ATGTCTTACACTAGCACACA
58691951 ATAACCCATA
Statistics
Matches: 147, Mismatches: 17, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
90 10 0.07
91 15 0.10
92 25 0.17
93 16 0.11
94 63 0.43
95 14 0.10
96 4 0.03
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATATGGTCGATGCATGTCCCAGACA
TGTCTTACACTAGCACACATCTCATAGCC
Found at i:58698184 original size:16 final size:17
Alignment explanation
Indices: 58698154--58698188 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
58698144 CGTCAAAATT
58698154 AACTCACCAAAATTTTC
1 AACTCACCAAAATTTTC
*
58698171 AACTCACCAAATTTTTC
1 AACTCACCAAAATTTTC
58698188 A
1 A
58698189 CACACTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.29, G:0.00, T:0.31
Consensus pattern (17 bp):
AACTCACCAAAATTTTC
Found at i:58708625 original size:43 final size:43
Alignment explanation
Indices: 58708511--58708747 Score: 236
Period size: 43 Copynumber: 5.6 Consensus size: 43
58708501 ATCGAGATGA
* * *
58708511 GATTCCATGTAAGACCATGTCTGGGACATTGGCATC-GTATTGT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCATTA-TAT
* * *
58708554 GA-TT-ACGT--GACCATTTCTGGGACATTGGCATCATTATGT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCATTATAT
* **
58708593 GATTTCATGTAAGACCACGTCTGGGATGTTGGCATCGA-TATAT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATC-ATTATAT
** *
58708636 GATAACATGTAAGACCATTTCTGGGACATTGGCATCATTATAT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATCATTATAT
* *
58708679 GATTTCATGTAAGACCACGTCTGGAACATTGGCATCGA-TATAT
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCATC-ATTATAT
** * *
58708722 GATAACTTGTAAGACCATATCTGGGA
1 GATTTCATGTAAGACCATGTCTGGGA
58708748 TATGACATTC
Statistics
Matches: 159, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
39 28 0.18
40 4 0.03
41 6 0.04
42 2 0.01
43 117 0.74
44 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
GATTTCATGTAAGACCATGTCTGGGACATTGGCATCATTATAT
Found at i:58708676 original size:86 final size:85
Alignment explanation
Indices: 58708511--58708747 Score: 338
Period size: 86 Copynumber: 2.8 Consensus size: 85
58708501 ATCGAGATGA
* * * *
58708511 GATTCCATGTAAGACCATGTCTGGGACATTGGCATCG-TATTGTGATTAC-GT--GACCATTTCT
1 GATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATA-TATGATAACTGTAAGACCATTTCT
*
58708572 GGGACATTGGCATCATTATGT
65 GGGACATTGGCATCATTATAT
**
58708593 GATTTCATGTAAGACCACGTCTGGGATGTTGGCATCGATATATGATAACATGTAAGACCATTTCT
1 GATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATATATGATAAC-TGTAAGACCATTTCT
58708658 GGGACATTGGCATCATTATAT
65 GGGACATTGGCATCATTATAT
* *
58708679 GATTTCATGTAAGACCACGTCTGGAACATTGGCATCGATATATGATAACTTGTAAGACCATATCT
1 GATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATATATGATAAC-TGTAAGACCATTTCT
58708744 GGGA
65 GGGA
58708748 TATGACATTC
Statistics
Matches: 138, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
82 40 0.29
83 2 0.01
84 2 0.01
86 94 0.68
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (85 bp):
GATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATATATGATAACTGTAAGACCATTTCTG
GGACATTGGCATCATTATAT
Found at i:58715276 original size:43 final size:43
Alignment explanation
Indices: 58715229--58715368 Score: 176
Period size: 43 Copynumber: 3.3 Consensus size: 43
58715219 TTGGATTACA
* * *
58715229 TGTAAGACCAGGTCTGGGACATTGGCATTG-TATTTTGATTAT-G
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTA-TATGATT-TCG
58715272 TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTCG
* * ** *
58715315 TGTAAGACCATGTCTGGGACGTTGGCATCGATATATGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTCG
58715358 TGTAAGACCAT
1 TGTAAGACCAT
58715369 ATTTGGGATA
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.01
43 84 0.97
44 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTCG
Found at i:58722905 original size:28 final size:28
Alignment explanation
Indices: 58722865--58722919 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
58722855 TTTTAAAAAT
58722865 AAACAAAGCATTCATTCGCTTCGCTCTC
1 AAACAAAGCATTCATTCGCTTCGCTCTC
58722893 AAACAAAGCATTCATTCGCTTCGCTCT
1 AAACAAAGCATTCATTCGCTTCGCTCT
58722920 TTCCTTTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.31, G:0.11, T:0.29
Consensus pattern (28 bp):
AAACAAAGCATTCATTCGCTTCGCTCTC
Found at i:58727821 original size:26 final size:28
Alignment explanation
Indices: 58727792--58727846 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
58727782 TATTCATGTG
58727792 GTTTAAAGC-TTTT-TTATTTTAATTTT
1 GTTTAAAGCTTTTTCTTATTTTAATTTT
*
58727818 GTTTCAAGCTTTTTTCTTATTTTAATTTT
1 GTTTAAAGC-TTTTTCTTATTTTAATTTT
58727847 TACTTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 8 0.32
28 4 0.16
29 13 0.52
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.65
Consensus pattern (28 bp):
GTTTAAAGCTTTTTCTTATTTTAATTTT
Found at i:58728677 original size:13 final size:13
Alignment explanation
Indices: 58728670--58728706 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
58728660 CTAAAAACAT
*
58728670 AAATTAAAGATAA
1 AAATTAAAAATAA
*
58728683 AAATTAAAATTAA
1 AAATTAAAAATAA
58728696 AAATTAAAAAT
1 AAATTAAAAAT
58728707 CTTGAAACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (13 bp):
AAATTAAAAATAA
Found at i:58728698 original size:7 final size:7
Alignment explanation
Indices: 58728670--58728706 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
58728660 CTAAAAACAT
58728670 AAATTAA
1 AAATTAA
*
58728677 AGA-TAA
1 AAATTAA
58728683 AAATT-A
1 AAATTAA
58728689 AAATTAA
1 AAATTAA
58728696 AAATTAA
1 AAATTAA
58728703 AAAT
1 AAAT
58728707 CTTGAAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
6 11 0.42
7 15 0.58
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (7 bp):
AAATTAA
Found at i:58734241 original size:9 final size:9
Alignment explanation
Indices: 58734227--58734251 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
58734217 TAGCATACAA
58734227 CCTCCTTAT
1 CCTCCTTAT
58734236 CCTCCTTAT
1 CCTCCTTAT
58734245 CCTCCTT
1 CCTCCTT
58734252 CTCAACCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.48, G:0.00, T:0.44
Consensus pattern (9 bp):
CCTCCTTAT
Found at i:58735018 original size:7 final size:7
Alignment explanation
Indices: 58734996--58735031 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
58734986 CACTATTCAA
58734996 AAAATAAT
1 AAAAT-AT
*
58735004 ACAATAT
1 AAAATAT
58735011 AAAATAT
1 AAAATAT
58735018 AAAATAT
1 AAAATAT
58735025 AAAATAT
1 AAAATAT
58735032 TAATATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 22 0.85
8 4 0.15
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAATAT
Found at i:58735513 original size:22 final size:22
Alignment explanation
Indices: 58735488--58735531 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
58735478 TAGTCATATA
58735488 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
58735510 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
58735532 TACTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:58735569 original size:13 final size:14
Alignment explanation
Indices: 58735551--58735592 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
58735541 TTTCAATTTT
58735551 ATTTTAATAAT-TA
1 ATTTTAATAATATA
*
58735564 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
58735579 ATTTTAAATAATAT
1 ATTTT-AATAATAT
58735593 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
15 9 0.38
16 5 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:58735582 original size:15 final size:17
Alignment explanation
Indices: 58735555--58735591 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
58735545 AATTTTATTT
58735555 TAATAATTAATTTTAAA
1 TAATAATTAATTTTAAA
58735572 -AATAA-TAATTTTAAA
1 TAATAATTAATTTTAAA
58735587 TAATA
1 TAATA
58735592 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAATTAATTTTAAA
Found at i:58735644 original size:15 final size:15
Alignment explanation
Indices: 58735624--58735680 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
58735614 ATTCAATATT
58735624 AATATTTTAATAATA
1 AATATTTTAATAATA
*
58735639 AATATTTATTGCAATTATA
1 AATA-TT-TT--AATAATA
*
58735658 AATATATTAATAATA
1 AATATTTTAATAATA
*
58735673 AATGTTTT
1 AATATTTT
58735681 GTAGTGTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:58736064 original size:33 final size:32
Alignment explanation
Indices: 58735976--58736067 Score: 103
Period size: 32 Copynumber: 2.8 Consensus size: 32
58735966 AGATAAAAAT
*
58735976 AAATTCAACTAAACACCAGAAAATATTTTTAA
1 AAATTCAACTAAACACCAGAAAATATTTTCAA
* * * * *
58736008 AAAATCTACCAAACAACAGAAAATATTTTGCAC
1 AAATTCAACTAAACACCAGAAAATATTTT-CAA
* *
58736041 AGATTCAACTAAACACCAAAAAATATT
1 AAATTCAACTAAACACCAGAAAATATT
58736068 AACTTTTCTA
Statistics
Matches: 47, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
32 25 0.53
33 22 0.47
ACGTcount: A:0.53, C:0.18, G:0.04, T:0.24
Consensus pattern (32 bp):
AAATTCAACTAAACACCAGAAAATATTTTCAA
Found at i:58738973 original size:2 final size:2
Alignment explanation
Indices: 58738968--58739001 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
58738958 TATATATATA
58738968 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
58739002 GGGCAGAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:58739694 original size:14 final size:15
Alignment explanation
Indices: 58739675--58739721 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 15
58739665 TTTGTGTTAG
58739675 AAATTAAAATA-TAA
1 AAATTAAAATATTAA
58739689 AAATT-AAATATTAA
1 AAATTAAAATATTAA
* *
58739703 ATATTAAATTTATTAA
1 AAATTAAA-ATATTAA
58739719 AAA
1 AAA
58739722 ATCAAAGCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 5 0.19
14 12 0.44
15 2 0.07
16 8 0.30
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
AAATTAAAATATTAA
Found at i:58741539 original size:42 final size:42
Alignment explanation
Indices: 58741469--58741598 Score: 154
Period size: 42 Copynumber: 3.1 Consensus size: 42
58741459 ATTTAGATGC
* *
58741469 CACACGGCCTAGACACACGGCCATGTCCTTGCTCGTGTGGCT
1 CACACAGCCTGGACACACGGCCATGTCCTTGCTCGTGTGGCT
** *
58741511 CACTTAGCCTGGACACACGGCCATGTCCTTGCTCGTATGGCT
1 CACACAGCCTGGACACACGGCCATGTCCTTGCTCGTGTGGCT
* * * * *
58741553 CACACGGCCTGGA-ACACGCCCATGTCGTATGCCCGTGTGGTT
1 CACACAGCCTGGACACACGGCCATGTCCT-TGCTCGTGTGGCT
58741595 CACA
1 CACA
58741599 TGGGCACACG
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
41 13 0.18
42 61 0.82
ACGTcount: A:0.18, C:0.35, G:0.25, T:0.22
Consensus pattern (42 bp):
CACACAGCCTGGACACACGGCCATGTCCTTGCTCGTGTGGCT
Found at i:58743515 original size:18 final size:17
Alignment explanation
Indices: 58743500--58743541 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
58743490 ATGAATTTTG
58743500 ATATATGTTTATATTTAT
1 ATATAT-TTTATATTTAT
58743518 ATATATTTTACT-TTTAT
1 ATATATTTTA-TATTTAT
58743535 ATTATAT
1 A-TATAT
58743542 AATATTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
ATATATTTTATATTTAT
Found at i:58743535 original size:23 final size:23
Alignment explanation
Indices: 58743507--58743550 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
58743497 TTGATATATG
58743507 TTTATATT-TATATATATTTTACT
1 TTTATATTATATA-ATATTTTACT
58743530 TTTATATTATATAATATTTTA
1 TTTATATTATATAATATTTTA
58743551 ATTAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTATATTATATAATATTTTACT
Found at i:58746867 original size:25 final size:25
Alignment explanation
Indices: 58746833--58746882 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
58746823 GATACTTGGG
58746833 ATAGCTCACACATAGTGTGCTAACT
1 ATAGCTCACACATAGTGTGCTAACT
58746858 ATAGCTCACACATAGTGTGCTAACT
1 ATAGCTCACACATAGTGTGCTAACT
58746883 CATATAACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (25 bp):
ATAGCTCACACATAGTGTGCTAACT
Found at i:58749875 original size:13 final size:14
Alignment explanation
Indices: 58749859--58749891 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
58749849 TTTTTCCATC
58749859 TTAATTATT-TATT
1 TTAATTATTGTATT
*
58749872 TTAATTATTGTTTT
1 TTAATTATTGTATT
58749886 TTAATT
1 TTAATT
58749892 TACAGATCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (14 bp):
TTAATTATTGTATT
Found at i:58757435 original size:11 final size:11
Alignment explanation
Indices: 58757419--58757443 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
58757409 TTATGGTGGT
58757419 TCTATTAACAA
1 TCTATTAACAA
58757430 TCTATTAACAA
1 TCTATTAACAA
58757441 TCT
1 TCT
58757444 TTTAGAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (11 bp):
TCTATTAACAA
Found at i:58757833 original size:45 final size:45
Alignment explanation
Indices: 58757777--58757867 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
58757767 AAACAAGAAG
* *
58757777 TAGTTTTAAACTAAACTAGAAGTAGTTTTAAACTAAATTTTCTTT
1 TAGTTTTAAACTAAACTAGAAGTAGTTTTAAACTAAACTTTATTT
58757822 TAGTTTTAAACTAAACTAGAAGTAGTTTTAAACTAAACTTTATTT
1 TAGTTTTAAACTAAACTAGAAGTAGTTTTAAACTAAACTTTATTT
58757867 T
1 T
58757868 TGAAATAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (45 bp):
TAGTTTTAAACTAAACTAGAAGTAGTTTTAAACTAAACTTTATTT
Found at i:58757860 original size:22 final size:22
Alignment explanation
Indices: 58757760--58757860 Score: 121
Period size: 22 Copynumber: 4.5 Consensus size: 22
58757750 AGAATTCTAA
* *
58757760 TTAATCTAAACAAGAAGTAGTT
1 TTAAACTAAACTAGAAGTAGTT
58757782 TTAAACTAAACTAGAAGTAGTT
1 TTAAACTAAACTAGAAGTAGTT
* *****
58757804 TTAAACTAAATTTTCTTTTAGTT
1 TTAAACTAAA-CTAGAAGTAGTT
58757827 TTAAACTAAACTAGAAGTAGTT
1 TTAAACTAAACTAGAAGTAGTT
58757849 TTAAACTAAACT
1 TTAAACTAAACT
58757861 TTATTTTTGA
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
22 48 0.75
23 16 0.25
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (22 bp):
TTAAACTAAACTAGAAGTAGTT
Found at i:58759669 original size:13 final size:13
Alignment explanation
Indices: 58759651--58759675 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58759641 AATCTCACAC
58759651 ACCCGTGTGGACA
1 ACCCGTGTGGACA
58759664 ACCCGTGTGGAC
1 ACCCGTGTGGAC
58759676 TCACACGTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.16
Consensus pattern (13 bp):
ACCCGTGTGGACA
Found at i:58768768 original size:43 final size:43
Alignment explanation
Indices: 58768721--58768836 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
58768711 TGAGATTACA
*
58768721 TGTAAGACCATGTCTAGGACATT-GCTATTGTACTATGATTAT-G
1 TGTAAGACCATGTCTAGGACATTGGC-ATCGTACTATGATT-TCG
**
58768764 TGTAAGACCATGTCTAGGACATTGGCATCGTTTTATGATTTCG
1 TGTAAGACCATGTCTAGGACATTGGCATCGTACTATGATTTCG
* * *
58768807 TGTAAGACCGTGTCTGGGACATTAGCATCG
1 TGTAAGACCATGTCTAGGACATTGGCATCG
58768837 ATATGAGATA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
42 1 0.02
43 62 0.95
44 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACATTGGCATCGTACTATGATTTCG
Found at i:58769349 original size:33 final size:33
Alignment explanation
Indices: 58769310--58769387 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
58769300 TAAGTTGCCA
* *
58769310 AATAAGATCATAGCTTGG-CTATGGCAATCGAAT
1 AATAAGACCATAGC-TGGACTATGACAATCGAAT
*
58769343 AATAAGACCATAGCTGGACTATGACAATCGACT
1 AATAAGACCATAGCTGGACTATGACAATCGAAT
*
58769376 AAAAAGACCATA
1 AATAAGACCATA
58769388 ATCGGGTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 3 0.08
33 37 0.93
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (33 bp):
AATAAGACCATAGCTGGACTATGACAATCGAAT
Found at i:58772561 original size:19 final size:20
Alignment explanation
Indices: 58772516--58772562 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
58772506 ATTACAAAAT
*
58772516 AATTCAAAATAATTTTTAAA
1 AATTCAAAATAATTTATAAA
*
58772536 AAATCAAAAT-ATTTATAAA
1 AATTCAAAATAATTTATAAA
*
58772555 ATTTCAAA
1 AATTCAAA
58772563 TTTTATACTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (20 bp):
AATTCAAAATAATTTATAAA
Found at i:58778394 original size:47 final size:47
Alignment explanation
Indices: 58778198--58778509 Score: 391
Period size: 46 Copynumber: 6.7 Consensus size: 47
58778188 ATGAAATGTG
* * * * **
58778198 TAAGACAATGGTTGAAAGATACCATGGCAACATGA-TACAAGATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAAATGAA
*
58778244 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACAAG-AAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAAATGAA
* *
58778290 TAAGACCATGGTTAAAAGATACCATGGCAACGTGACAAG-AAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAAATGAA
* **
58778336 TAAGACCATGGTTGAAAGATACCATGGCTACATGACGGGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAAATGAA
** ** *
58778383 TAAGACCATGGTTGAAAGATACCACAGCAACATGACGGGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAAATGAA
58778430 TAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGAAAAT-AA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAAATGAA
* * * *
58778475 GTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 -TAAGACCATGGTTGAAAGATACCATGGCAACATG
58778510 TCGAAGATAA
Statistics
Matches: 238, Mismatches: 25, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
45 2 0.01
46 151 0.63
47 85 0.36
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (47 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAAATGAA
Found at i:58778466 original size:140 final size:138
Alignment explanation
Indices: 58778197--58778509 Score: 405
Period size: 140 Copynumber: 2.3 Consensus size: 138
58778187 AATGAAATGT
* * * **
58778197 GTAAGACAATGGTTGAAAGATACCATGGCAACATGATACAAGATGTGTAAGACCATGGTTGAAAG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGAGACAAAATGAATAAGACCATGGTTGAAAG
** * *
58778262 ATACCATGGCAACGTGACAAGAAATGAATAAGACCATGGTTAAAAGATACCATGGCAACGTGACA
66 ATACCACAGCAACATGACAAGAAATGAATAAGACCATGGTTAAAAGATACCATGGCAACATGACA
58778327 -AGAAATGAA
131 GA-AAAT-AA
* **
58778336 -TAAGACCATGGTTGAAAGATACCATGGCTACATGACGGGAAAATGAATAAGACCATGGTTGAAA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGA-GACAAAATGAATAAGACCATGGTTGAAA
** *
58778400 GATACCACAGCAACATGACGGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGA
65 GATACCACAGCAACATGAC-AAGAAATGAATAAGACCATGGTTAAAAGATACCATGGCAACATGA
58778465 CAGAAAATAA
129 CAGAAAATAA
* * * *
58778475 GTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATG
58778510 TCGAAGATAA
Statistics
Matches: 150, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
138 33 0.22
139 40 0.27
140 76 0.51
141 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.19
Consensus pattern (138 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACATGAGACAAAATGAATAAGACCATGGTTGAAAG
ATACCACAGCAACATGACAAGAAATGAATAAGACCATGGTTAAAAGATACCATGGCAACATGACA
GAAAATAA
Found at i:58778615 original size:13 final size:13
Alignment explanation
Indices: 58778594--58778637 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
58778584 CAGATGAAAA
58778594 AAATGGTTATATG
1 AAATGGTTATATG
* **
58778607 AATTGGTTATACA
1 AAATGGTTATATG
*
58778620 AAATGGTTATGTG
1 AAATGGTTATATG
58778633 AAATG
1 AAATG
58778638 TTTACAGGAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.39, C:0.02, G:0.23, T:0.36
Consensus pattern (13 bp):
AAATGGTTATATG
Found at i:58779551 original size:19 final size:19
Alignment explanation
Indices: 58779492--58779558 Score: 75
Period size: 18 Copynumber: 3.6 Consensus size: 19
58779482 TCGGTTATCT
*
58779492 AGTAACAGTC-AATTATTC
1 AGTAACAATCAAATTATTC
* *
58779510 AGTAAAAATCAAA-TATAC
1 AGTAACAATCAAATTATTC
*
58779528 AGTAACAATTAAATTATTC
1 AGTAACAATCAAATTATTC
*
58779547 AGTAACAGTCAA
1 AGTAACAATCAA
58779559 TCTTTCCAGT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
18 23 0.59
19 16 0.41
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.28
Consensus pattern (19 bp):
AGTAACAATCAAATTATTC
Found at i:58779685 original size:6 final size:6
Alignment explanation
Indices: 58779669--58779699 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
58779659 CTGAAGCCGG
*
58779669 AACAGT GACAGT AACAGT AACAGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT AACAGT A
58779700 CGGTACACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:58779763 original size:47 final size:47
Alignment explanation
Indices: 58779687--58779799 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
58779677 CAGTAACAGT
* * * **
58779687 AACAGTAACAGTACGGTACACAGAGTACCTCACCGGAACAAATCCGG
1 AACAGTAACAGTATGGTACACACAATACCTCACCGGAACAAATCCAA
*
58779734 AACAGTAACAGTATGGTACACACAATACCTCATCGGAACAAATCCAA
1 AACAGTAACAGTATGGTACACACAATACCTCACCGGAACAAATCCAA
*
58779781 AACAATAACAGTAATGGTA
1 AACAGTAACAGT-ATGGTA
58779800 ACAGTAACAA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
47 52 0.90
48 6 0.10
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.16
Consensus pattern (47 bp):
AACAGTAACAGTATGGTACACACAATACCTCACCGGAACAAATCCAA
Found at i:58779851 original size:12 final size:12
Alignment explanation
Indices: 58779834--58779858 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
58779824 AGTGCCGAAT
58779834 CGGTAACAGTAA
1 CGGTAACAGTAA
58779846 CGGTAACAGTAA
1 CGGTAACAGTAA
58779858 C
1 C
58779859 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:58783443 original size:77 final size:78
Alignment explanation
Indices: 58783335--58783645 Score: 444
Period size: 80 Copynumber: 4.0 Consensus size: 78
58783325 GGAAATTAAA
* * * *
58783335 AGTAAAATAAAAATCATTTCGAGATTGATTCCCGCCATTCAACGATTTTATTCCAAAATTGTTTT
1 AGTAAAATAAAAATCGTTTCGGGATTGATTCCCGCCATTCAATGATTTTATTCCAAATTTGTTTT
58783400 ATTTCTAAAAATG
66 ATTTCTAAAAATG
* * *
58783413 AGTAAAAT-AAAATCGTTTCAGGATCGATTCCCACCATTCAATGATTTTATTCCAAATTTGTTTT
1 AGTAAAATAAAAATCGTTTCGGGATTGATTCCCGCCATTCAATGATTTTATTCCAAATTTGTTTT
*
58783477 ATTTCTAAAAACG
66 ATTTCTAAAAATG
* * * *
58783490 AGTAATATAAAAATCGTTTCGGGATTGATTCTCGCCGTTCAATGATTTTATTCCACATTTGTTTT
1 AGTAAAATAAAAATCGTTTCGGGATTGATTCCCGCCATTCAATGATTTTATTCCAAATTTGTTTT
*
58783555 ATTTCCAAAAAAATG
66 ATTT-C-TAAAAATG
* * *
58783570 AGTAAAATAAAAATCGTTTCGGGATTGATTCCCGCCCTTCAATGATTTCATTCCAAATTTGGTTT
1 AGTAAAATAAAAATCGTTTCGGGATTGATTCCCGCCATTCAATGATTTTATTCCAAATTTGTTTT
*
58783635 ATTTCCAAAAA
66 ATTTCTAAAAA
58783646 CAAGAAATTA
Statistics
Matches: 206, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
77 68 0.33
78 67 0.33
79 2 0.01
80 69 0.33
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (78 bp):
AGTAAAATAAAAATCGTTTCGGGATTGATTCCCGCCATTCAATGATTTTATTCCAAATTTGTTTT
ATTTCTAAAAATG
Found at i:58783797 original size:84 final size:84
Alignment explanation
Indices: 58783654--58783897 Score: 307
Period size: 84 Copynumber: 2.9 Consensus size: 84
58783644 AACAAGAAAT
* * * *
58783654 TAAATAAAATAAAATTTGTTTCG-GAATTTATT-TCCCCGTTTAACAAGATTTTATTTGATTTTA
1 TAAATTAAATAAAATATGTTTCGAG-ATTTATTCTCACCATTTAACAAGATTTTATTTGATTTTA
58783717 TTTTGTTTCCAAATT-AGAA-
65 TTTTGTTTCCAAATTCA-AAC
* * *
58783736 TAGAATTAAATAAAATCTATTTCGAGATTTATTCTCACCATTTAACAAGATTTAATTTGATTTTA
1 TA-AATTAAATAAAATATGTTTCGAGATTTATTCTCACCATTTAACAAGATTTTATTTGATTTTA
58783801 TTTTGTTTCCAAATTCAAAC
65 TTTTGTTTCCAAATTCAAAC
* * * * * * *
58783821 TAAATTAAATAAAATATGTTTCAATATTTATTCCCTCTATTTAACAAGATTTTATTTGATATTGT
1 TAAATTAAATAAAATATGTTTCGAGATTTATTCTCACCATTTAACAAGATTTTATTTGATTTTAT
58783886 TTTGTTTCCAAA
66 TTTGTTTCCAAA
58783898 CAAAGACGTA
Statistics
Matches: 141, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
82 2 0.01
83 25 0.18
84 111 0.79
85 3 0.02
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (84 bp):
TAAATTAAATAAAATATGTTTCGAGATTTATTCTCACCATTTAACAAGATTTTATTTGATTTTAT
TTTGTTTCCAAATTCAAAC
Found at i:58785299 original size:31 final size:32
Alignment explanation
Indices: 58785233--58785305 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
58785223 GTTGGTAAGT
* *
58785233 AGATATTTATTATTTATTATTATTAAGTTAAA
1 AGATATTTATTAATTATAATTATTAAGTTAAA
*
58785265 AGATATTTATTAATTA-AATTATTATA-TTATA
1 AGATATTTATTAATTATAATTATTA-AGTTAAA
*
58785296 AGATTTTTAT
1 AGATATTTAT
58785306 ATGATAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 20 0.56
32 16 0.44
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.53
Consensus pattern (32 bp):
AGATATTTATTAATTATAATTATTAAGTTAAA
Found at i:58785613 original size:11 final size:11
Alignment explanation
Indices: 58785597--58785630 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
58785587 ATACGGAAAT
58785597 AAGAAGAAAGA
1 AAGAAGAAAGA
58785608 AAGAAGAAAGAA
1 AAGAAGAAAG-A
*
58785620 AAGAAAAAAGA
1 AAGAAGAAAGA
58785631 GAAATAAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
AAGAAGAAAGA
Found at i:58785982 original size:22 final size:24
Alignment explanation
Indices: 58785954--58785997 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
58785944 TATGGCAAGA
58785954 AATTAAG-TAGAAAAG-AAGTACG
1 AATTAAGTTAGAAAAGTAAGTACG
*
58785976 AATTAAGTTAGAATAGTAAGTA
1 AATTAAGTTAGAAAAGTAAGTA
58785998 AACTTAGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 7 0.37
24 5 0.26
ACGTcount: A:0.52, C:0.02, G:0.20, T:0.25
Consensus pattern (24 bp):
AATTAAGTTAGAAAAGTAAGTACG
Found at i:58786775 original size:38 final size:39
Alignment explanation
Indices: 58786675--58786781 Score: 92
Period size: 38 Copynumber: 2.7 Consensus size: 39
58786665 CCTTGAGTCT
* ** *
58786675 ATGAGACACTGGGTGTCACTATTTTACTTCGGATAGATTCG
1 ATGAGACACTGGGTGTCA--ACTTTACTTCGGATAGAGCCA
** * * *
58786716 ATGAGGTACTGGGT-ACCACTTTACTTCGGCTA-AGCCA
1 ATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGCCA
*
58786753 ATGAGACACTGGGTGTCAACTTTGCTTCG
1 ATGAGACACTGGGTGTCAACTTTACTTCG
58786782 AACTATCCGA
Statistics
Matches: 51, Mismatches: 14, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
37 14 0.27
38 24 0.47
40 1 0.02
41 12 0.24
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (39 bp):
ATGAGACACTGGGTGTCAACTTTACTTCGGATAGAGCCA
Found at i:58790826 original size:23 final size:23
Alignment explanation
Indices: 58790796--58790853 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
58790786 GTGGATTCCT
58790796 CCCAAACACACCAAAATATCCAA
1 CCCAAACACACCAAAATATCCAA
*
58790819 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAAAATATCCAA
58790842 CCCAAACACACC
1 CCCAAACACACC
58790854 CGGAATATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.48, C:0.43, G:0.02, T:0.07
Consensus pattern (23 bp):
CCCAAACACACCAAAATATCCAA
Found at i:58791375 original size:15 final size:15
Alignment explanation
Indices: 58791355--58791401 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
58791345 TAATATATAT
58791355 TTCAATCAATAAAAA
1 TTCAATCAATAAAAA
* *
58791370 TTCAATCAA-AATGAT
1 TTCAATCAATAA-AAA
*
58791385 TTCAATCAATATAAA
1 TTCAATCAATAAAAA
58791400 TT
1 TT
58791402 TGATAAATTC
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
14 2 0.08
15 22 0.88
16 1 0.04
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.34
Consensus pattern (15 bp):
TTCAATCAATAAAAA
Found at i:58792608 original size:467 final size:467
Alignment explanation
Indices: 58791735--58794056 Score: 4292
Period size: 467 Copynumber: 5.0 Consensus size: 467
58791725 ATTCACCCCT
* *
58791735 ATTCTGCTGTCTAACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCATAGTACAGAACTC
1 ATTCTGCTGTCTGACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCACAGTACAGAACTC
* *
58791800 AGATAATATTCCTGTTGATTTCACCTAAAAATAGACTCATTAGGGATTCTAAACATATAACTTTA
66 GGATAATATTCCTGTTGATTTCTCCTAAAAATAGACTCATTAGGGATTCTAAACATATAACTTTA
*
58791865 ACCCTCTAATTATTTTTCTCCAATTTTTGGTGATTTTCCAAAGTCAGAACAGGGGAACCCAAATT
131 ACCCTCTAATTATTTTTCTCCAATTTTTGGTGATTTTCCAAAGTCAGAACAGGGGAACCCGAATT
*
58791930 CATTCTGACCTTGTCTCACAAAATTCATTATATCTCATAATTTACAATTCAATTTCTTAAACCGT
196 CATTCTGACCTTGTCTCACAAAATTCATTATATCTCATAATTTACAATTCAATTGCTTAAACCGT
* *
58791995 TTCTTTTATAAGAAACTAGACTCAATAAGATTTAATTCCATATTTTATTCATCCTCTAATTCAAT
261 TTCTTTTATAAGAAACTAGACTCAATAAGCTTTAATTCCATATTTTATTCATTCTCTAATTCAAT
* * *
58792060 TTCTAAAATTTTTGATGATTTTTTAAAGTTAGACTACTGCTGCTATCCAAAATAGTCTTAGTGCA
326 TTCTACAATTTTTGATGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAATAGTCTTAGTGCA
58792125 AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
391 AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
58792190 AATCCTAACTAA
456 AATCCTAACTAA
* * *
58792202 ATTCTGCTATCTAACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCACAATACAGAACTC
1 ATTCTGCTGTCTGACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCACAGTACAGAACTC
58792267 GGATAATATTCCTGTTGATTTCTCCTAAAAATAGACTCATTAGGGATTCTAAACATATAACTTTA
66 GGATAATATTCCTGTTGATTTCTCCTAAAAATAGACTCATTAGGGATTCTAAACATATAACTTTA
*
58792332 ACCCTCTAATTATTTTTCTCCAATTTTTGGTGATTTTTCAAAGTCAGAACAGGGGAACCCGAATT
131 ACCCTCTAATTATTTTTCTCCAATTTTTGGTGATTTTCCAAAGTCAGAACAGGGGAACCCGAATT
*
58792397 CATTCTGACCTTGTCTTACAAAATTCATTATATCTCATAATTTACAATTCAATTGCTTAAACCGT
196 CATTCTGACCTTGTCTCACAAAATTCATTATATCTCATAATTTACAATTCAATTGCTTAAACCGT
58792462 TTCTTTTATAAGAAACTAGACTCAATAAGCTTTAATTCCATATTTTATTCATTCTCTAATTCAAT
261 TTCTTTTATAAGAAACTAGACTCAATAAGCTTTAATTCCATATTTTATTCATTCTCTAATTCAAT
* *
58792527 TTCTACAATTTTTGATGATTTTTCAAAGTTAGACTACTACAGCTGTCCAAAATAGTCTTAGTGCA
326 TTCTACAATTTTTGATGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAATAGTCTTAGTGCA
58792592 AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
391 AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
58792657 AATCCTAACTAA
456 AATCCTAACTAA
58792669 ATTCTGCTGTCTGACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCACAGTACAGAACTC
1 ATTCTGCTGTCTGACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCACAGTACAGAACTC
*
58792734 GGATAATATTCCTGTTGATTTCTCCTAAAAATAGACTCATTATGGATTCTAAACATATAACTTTA
66 GGATAATATTCCTGTTGATTTCTCCTAAAAATAGACTCATTAGGGATTCTAAACATATAACTTTA
58792799 ACCCTCTAATTATTTTTCTCCAATTTTTGGTGATTTTCCAAAGTCAGAACAGGGGAACCCGAATT
131 ACCCTCTAATTATTTTTCTCCAATTTTTGGTGATTTTCCAAAGTCAGAACAGGGGAACCCGAATT
*
58792864 CATTCTGACCTTATCTCACAAAATTCATTATATCTCATAATTTACAATTCAATTGCTTAAACCGT
196 CATTCTGACCTTGTCTCACAAAATTCATTATATCTCATAATTTACAATTCAATTGCTTAAACCGT
*
58792929 TTCTTTTATAAGAAACTAGACTCAATAAGCTTTAATTCCATATTTTATTCATCCTCTAATTCAAT
261 TTCTTTTATAAGAAACTAGACTCAATAAGCTTTAATTCCATATTTTATTCATTCTCTAATTCAAT
58792994 TTCTACAATTTTTGATGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAATAGTCTTAGTGCA
326 TTCTACAATTTTTGATGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAATAGTCTTAGTGCA
58793059 AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
391 AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
58793124 AATCCTAACTAA
456 AATCCTAACTAA
*
58793136 ATTCTGTTGTCTGACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCACAGTACAGAACTC
1 ATTCTGCTGTCTGACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCACAGTACAGAACTC
*
58793201 GGATAATATTCCTGTTGATTTCACCTAAAAATAGACTCATTAGGGATTCTAAACATATAACTTTA
66 GGATAATATTCCTGTTGATTTCTCCTAAAAATAGACTCATTAGGGATTCTAAACATATAACTTTA
* *
58793266 ACCCTCTAATTATTTTTCTCTAATTTTTGGTGATTTTTCAAAGTCAGAACAGGGGAACCCGAATT
131 ACCCTCTAATTATTTTTCTCCAATTTTTGGTGATTTTCCAAAGTCAGAACAGGGGAACCCGAATT
* *
58793331 CATTCTGCCCTTGTCTCACAAAATTCATTATATCTCATAATTTACAATTCAATTTCTTAAACCGT
196 CATTCTGACCTTGTCTCACAAAATTCATTATATCTCATAATTTACAATTCAATTGCTTAAACCGT
58793396 TTCTTTTATAAGAAACTAGACTCAATAAGCTTTAATTCCATATTTTATTCATTCTCTAATTCAAT
261 TTCTTTTATAAGAAACTAGACTCAATAAGCTTTAATTCCATATTTTATTCATTCTCTAATTCAAT
* **
58793461 TTCTACAATTTTTGATGATTTTTCAAAGTTAGACTACTACAACTGTCCAAAATAGTCTTAGTGCA
326 TTCTACAATTTTTGATGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAATAGTCTTAGTGCA
58793526 AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
391 AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
58793591 AATCCTAACTAA
456 AATCCTAACTAA
* *
58793603 ATCCTGCTGTCTGACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCATAGTACAGAACTC
1 ATTCTGCTGTCTGACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCACAGTACAGAACTC
*
58793668 GGATAATATTCCTGTTGATTTATCCTAAAAATAGACTCATTAGGGATTCTAAACATATAACTTTA
66 GGATAATATTCCTGTTGATTTCTCCTAAAAATAGACTCATTAGGGATTCTAAACATATAACTTTA
58793733 ACCCTCTAATTATTTTTCTCCAATTTTTGGTGATTTTCCAAAGTCAGAACAGGGGAACCCGAATT
131 ACCCTCTAATTATTTTTCTCCAATTTTTGGTGATTTTCCAAAGTCAGAACAGGGGAACCCGAATT
* *
58793798 CATTCTGACCTTGTCTCACAAAATTCATTATATCTTATAATTTACAATTCAATTGCTTAAACTGT
196 CATTCTGACCTTGTCTCACAAAATTCATTATATCTCATAATTTACAATTCAATTGCTTAAACCGT
*
58793863 TTCTTTTATAAGAAACTAGAATCAATAAGCTTTAATTCCATATTTTATTCA-T-TCT--TTCAAT
261 TTCTTTTATAAGAAACTAGACTCAATAAGCTTTAATTCCATATTTTATTCATTCTCTAATTCAAT
58793924 TTCTACAATTTTTGATGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAATAGTCTTAGTGCA
326 TTCTACAATTTTTGATGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAATAGTCTTAGTGCA
58793989 AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
391 AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
58794054 AAT
456 AAT
58794057 TCATACTTTA
Statistics
Matches: 1802, Mismatches: 53, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
463 136 0.08
465 3 0.00
466 1 0.00
467 1662 0.92
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (467 bp):
ATTCTGCTGTCTGACAGTTTCGACCCTTCTTCACTAAAAATTAATTATCTCACAGTACAGAACTC
GGATAATATTCCTGTTGATTTCTCCTAAAAATAGACTCATTAGGGATTCTAAACATATAACTTTA
ACCCTCTAATTATTTTTCTCCAATTTTTGGTGATTTTCCAAAGTCAGAACAGGGGAACCCGAATT
CATTCTGACCTTGTCTCACAAAATTCATTATATCTCATAATTTACAATTCAATTGCTTAAACCGT
TTCTTTTATAAGAAACTAGACTCAATAAGCTTTAATTCCATATTTTATTCATTCTCTAATTCAAT
TTCTACAATTTTTGATGATTTTTCAAAGTTAGACTACTGCTGCTGTCCAAAATAGTCTTAGTGCA
AAATGTTGATTTTCTACTTTTAATTTCAATTTAATCCTAACTAAATTCACTTACTTTTCTATCTT
AATCCTAACTAA
Found at i:58794424 original size:4 final size:4
Alignment explanation
Indices: 58794409--58794442 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
58794399 GATTTTCCCT
*
58794409 TTTC TCTC TTTC TTTC TTTC TTTCC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTT-C TTTC TTTC T
58794443 CCCATGTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTC
Found at i:58794506 original size:13 final size:13
Alignment explanation
Indices: 58794488--58794519 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
58794478 TTTTATTTCA
58794488 TTTATTTCTTTAT
1 TTTATTTCTTTAT
58794501 TTTATTTCTTTAT
1 TTTATTTCTTTAT
58794514 TTTATT
1 TTTATT
58794520 ATTAAACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTTCTTTAT
Found at i:58804836 original size:21 final size:21
Alignment explanation
Indices: 58804795--58804837 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
58804785 AAAATAAGTT
**
58804795 AAATTATATTATAATTTAAAA
1 AAATTATATTATAATGGAAAA
58804816 AAATTATATTATGAA-GGAAAA
1 AAATTATATTAT-AATGGAAAA
58804837 A
1 A
58804838 TGATTTGACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (21 bp):
AAATTATATTATAATGGAAAA
Done.