Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 182 of 253
Found at i:59382090 original size:2 final size:2
Alignment explanation
Indices: 59382083--59382113 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
59382073 GAATGTTGCC
59382083 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
59382114 ACATTATCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:59383852 original size:37 final size:37
Alignment explanation
Indices: 59383810--59383882 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
59383800 ATTTGGCAAG
59383810 ATCTTAGCGAGCGATTCAACAAGATTGATAGTTCAAT
1 ATCTTAGCGAGCGATTCAACAAGATTGATAGTTCAAT
*
59383847 ATCTTAGCGAGCGATTCAACAAGATTGATGGTTCAA
1 ATCTTAGCGAGCGATTCAACAAGATTGATAGTTCAA
59383883 GATTCTATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (37 bp):
ATCTTAGCGAGCGATTCAACAAGATTGATAGTTCAAT
Found at i:59385071 original size:2 final size:2
Alignment explanation
Indices: 59385064--59385095 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
59385054 AGTATGTACG
59385064 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
59385096 GTAATAGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:59385215 original size:17 final size:19
Alignment explanation
Indices: 59385174--59385215 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
59385164 CTAGTAATGT
59385174 TAAA-ATATATATAATATA
1 TAAATATATATATAATATA
*
59385192 TACATATATATATAA-A-A
1 TAAATATATATATAATATA
59385209 TAAATAT
1 TAAATAT
59385216 TGAAAAATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 7 0.33
18 4 0.19
19 10 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAATATATATATAATATA
Found at i:59385363 original size:22 final size:21
Alignment explanation
Indices: 59385337--59385400 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 21
59385327 TATGAAAATA
*
59385337 ATACTATGTATAAAGAATATAT
1 ATACTA-GTATAAAAAATATAT
* *
59385359 ATACTCGTATAATAAAATGTAT
1 ATACTAGTATAA-AAAATATAT
* *
59385381 ATACTAGTATTAACAATATA
1 ATACTAGTATAAAAAATATA
59385401 ATAGGGATAA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
21 12 0.35
22 22 0.65
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (21 bp):
ATACTAGTATAAAAAATATAT
Found at i:59385573 original size:3 final size:3
Alignment explanation
Indices: 59385503--59385564 Score: 83
Period size: 3 Copynumber: 20.7 Consensus size: 3
59385493 AAGTACCTAT
59385503 TAA TAA T-A TATA TAA -ATA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
59385548 TAA TAA TAA CAA TAA TA
1 TAA TAA TAA TAA TAA TA
59385565 GCAATAATAG
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
2 3 0.06
3 46 0.87
4 4 0.08
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:59385758 original size:3 final size:3
Alignment explanation
Indices: 59385752--59386001 Score: 92
Period size: 3 Copynumber: 80.7 Consensus size: 3
59385742 ATAGTAAATG
* * *
59385752 TAA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG TACA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A TAA
* * *
59385799 CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA TAA T-A TAGA -AA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* *
59385844 TTCAA -AA -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A
1 -T-AA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
59385886 TACA CTAA TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAA TAA TAA TAA
1 TA-A -TAA TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* * * *
59385934 TAA GTATA TTA TAAA TAA TATG TACA TAA CAG TAA TAA TAA TAA GTAA
1 TAA -TA-A TAA T-AA TAA TA-A TA-A TAA TAA TAA TAA TAA TAA -TAA
*
59385982 CAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
59386002 TAGAAATTCA
Statistics
Matches: 184, Mismatches: 34, Indels: 58
0.67 0.12 0.21
Matches are distributed among these distances:
2 19 0.10
3 129 0.70
4 31 0.17
5 5 0.03
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:59385786 original size:24 final size:24
Alignment explanation
Indices: 59385731--59385789 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
59385721 CACTAATATT
*
59385731 TATAAATAATAATAGTAAATGTAA
1 TATAAATAATAATAGTAAATATAA
* * *
59385755 TA-ATAATAATAATATTAAGTATAG
1 TATA-AATAATAATAGTAAATATAA
59385779 TATAAATAATA
1 TATAAATAATA
59385790 TGTACATAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.03
24 27 0.93
25 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.36
Consensus pattern (24 bp):
TATAAATAATAATAGTAAATATAA
Found at i:59385824 original size:19 final size:19
Alignment explanation
Indices: 59385796--59385832 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
59385786 AATATGTACA
*
59385796 TAACAGTAATAATAATAAG
1 TAACAATAATAATAATAAG
59385815 TAACAATAATAATAATAA
1 TAACAATAATAATAATAA
59385833 TAATATAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (19 bp):
TAACAATAATAATAATAAG
Found at i:59385967 original size:164 final size:167
Alignment explanation
Indices: 59385713--59386050 Score: 610
Period size: 164 Copynumber: 2.0 Consensus size: 167
59385703 ATATATAATA
*
59385713 AAAATATACACTAATATTTATAAATAATAATAGTAAATGTAATAATAATAATAATATTAAGTATA
1 AAAATATACACTAATATTTATAAATAATAATAGTAAA-GTAATAATAATAATAATAATAAGTATA
59385778 GTATAAATAATATGTACATAACAGTAATAATAATAAGTAACAATAATAATAATAATAATATAGAA
65 GTATAAATAATATGTACATAACAGTAATAATAATAAGTAACAATAATAATAATAATAATATAGAA
* *
59385843 ATTC-AAAAAAGTAAACATAATATAATGATATTAAAAT
130 ATTCAAAAAAACTAAACATAATATAATAATATTAAAAT
*
59385880 AAAATATACACTAATATTTATAAATAATAATAGTAAA-T-ATAATAATAATAATAATAAGTATAT
1 AAAATATACACTAATATTTATAAATAATAATAGTAAAGTAATAATAATAATAATAATAAGTATAG
59385943 TATAAATAATATGTACATAACAGTAATAATAATAAGTAACAATAATAATAATAATAATATAGAAA
66 TATAAATAATATGTACATAACAGTAATAATAATAAGTAACAATAATAATAATAATAATATAGAAA
59386008 TTCAAAAAAACTAAACATAATATAATAATATTAAAAT
131 TTCAAAAAAACTAAACATAATATAATAATATTAAAAT
59386045 AAAATA
1 AAAATA
59386051 ATTTAAAAAA
Statistics
Matches: 166, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
164 91 0.55
165 38 0.23
167 37 0.22
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.31
Consensus pattern (167 bp):
AAAATATACACTAATATTTATAAATAATAATAGTAAAGTAATAATAATAATAATAATAAGTATAG
TATAAATAATATGTACATAACAGTAATAATAATAAGTAACAATAATAATAATAATAATATAGAAA
TTCAAAAAAACTAAACATAATATAATAATATTAAAAT
Found at i:59386059 original size:16 final size:16
Alignment explanation
Indices: 59386026--59386058 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
59386016 AACTAAACAT
*
59386026 AATATAATAATATTAA
1 AATAAAATAATATTAA
59386042 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
59386057 AA
1 AA
59386059 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:59388117 original size:73 final size:73
Alignment explanation
Indices: 59388028--59389093 Score: 900
Period size: 72 Copynumber: 14.1 Consensus size: 73
59388018 ATTGGAAAGC
* * * **
59388028 AGAAATTGAAAATACCTCAGCGTGCCCTGACGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
59388093 TGAAAAAT
66 TGAAAAAT
* ** ** *
59388101 AGAAATTGAAATTACCTCAGCACGTCTTGAGGCTCAACTCACCTCTCG-TA-ATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TT
* *
59388164 TTTGAAAGAC
64 TTTGAAAAAT
* * *
59388174 AAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TT
** *
59388239 TTTTTAAAAC
64 TTTGAAAAAT
* * * *
59388249 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTT
1 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
59388314 TGAAACATAAATT
66 TG--A-A-AAA-T
** * ** **
59388327 AAGAAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGC-A-ATGAGT
1 -AG------AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
* *
59388390 TGATTTTTTTGAAAGAC
59 TGA--TTTTTGAAAAAT
* *
59388407 AAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TT
*
59388472 TTTG-AAAAC
64 TTTGAAAAAT
* * *
59388481 AGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
1 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
59388546 TGAAACATAAATT
66 TG--A-A-AAA-T
** * ** ** * *
59388559 AAGAAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTACGAGT
1 -AG------AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
*
59388624 TGATTTTTTTTTGAAAGAT
59 TGA----TTTTTGAAAAAT
* * * **
59388643 AGAAATTGAAAATTCCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGAAATTGAAAATACCTCAGC--GTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
59388707 TTTTGAAAACAT
63 TTTTGAAAA-AT
* * * *
59388719 --AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGAATTT
1 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
*
59388782 TG-AAAAC
66 TGAAAAAT
* * **
59388789 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----
59388854 TTTTTTTGAAAAAT
62 --TTTTTGAAAAAT
* * *
59388868 AGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATTT
1 AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
*
59388933 TG-AAAAC
66 TGAAAAAT
* * *
59388940 AGAAATTGAAATTACCTCAACGTGTCTTGAAAAAAGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AGAAATTGAAAATACCTCAGCGTGTCTTG----AGGCTCAACTCATTTCTCGCAATATGAGTTGA
*
59389005 ATTTTG-AAAAT
62 TTTTTGAAAAAT
* * * *
59389016 AGAAA-T-AAAAGTTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATAAGTTGAAT
1 AGAAATTGAAAA--TACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATT
59389079 TTTG-AAAAT
64 TTTGAAAAAT
59389088 AGAAAT
1 AGAAAT
59389094 AAAACTATCA
Statistics
Matches: 821, Mismatches: 114, Indels: 116
0.78 0.11 0.11
Matches are distributed among these distances:
70 1 0.00
71 13 0.02
72 170 0.21
73 143 0.17
74 83 0.10
75 102 0.12
76 66 0.08
77 22 0.03
78 5 0.01
79 99 0.12
80 1 0.00
81 2 0.00
82 1 0.00
83 12 0.01
84 2 0.00
85 92 0.11
86 1 0.00
87 1 0.00
89 5 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (73 bp):
AGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
TGAAAAAT
Found at i:59388587 original size:232 final size:232
Alignment explanation
Indices: 59388129--59389013 Score: 1250
Period size: 232 Copynumber: 3.8 Consensus size: 232
59388119 AGCACGTCTT
*
59388129 GAGGCTCAACTCACCTCTCGTA-ATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCATATGAGTTGATTTTTTTTGAAAGACAAAAATTGAAAATACCTC
* *
59388192 AGCATGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTTTTTAAAACAGAAATTG
66 AGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---TTTTTGAAAACAGAAATTG
*
59388257 AAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAACAT
128 AAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACAT
59388322 AAATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCC
193 AAATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCC
59388362 GAGGCTCAACTCACCTCTCGCA-ATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTC
1 GAGGCTCAACTCACCTCTCGCATATGAGTTGATTTTTTTTGAAAGACAAAAATTGAAAATACCTC
59388425 AGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGA
66 AGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGA
59388490 AATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACATA
129 AATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACATA
59388555 AATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCC
194 AATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCC
* * * *
59388594 GAGGCTCAACTCACCTCTCGCATTACGAGTTGATTTTTTTTTGAAAGATAGAAATTGAAAATTCC
1 GAGGCTCAACTCACCTCTCGCA-TATGAGTTGA-TTTTTTTTGAAAGACAAAAATTGAAAATACC
* ** *
59388659 TCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAAT
64 TCAGCATGT---CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAAT
* * *
59388723 TGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGAATTTTGAAAA
126 TGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAA
* * *
59388788 CAGAAATT--G------AAA-T-----TACCTCAGCGTGTCCT
190 CATAAATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCC
* * *
59388817 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAAATAGAAATTGAAAATA
1 GAGGCTCAACTCACCTCTCGC-ATATGAGTTGA---TTTTTTTTGAAAGACAAAAATTGAAAATA
* *
59388882 CCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAGAAATT
62 CCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT
*
59388947 GAAATTACCTCAACGTGTCTTGAAAAAAGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
127 GAAATTACCTCAACGTGTCTTG----AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGA
59389012 AA
188 AA
59389014 ATAGAAATAA
Statistics
Matches: 605, Mismatches: 31, Indels: 39
0.90 0.05 0.06
Matches are distributed among these distances:
222 1 0.00
223 111 0.18
224 1 0.00
225 39 0.06
226 3 0.00
227 35 0.06
228 1 0.00
229 3 0.00
232 146 0.24
233 104 0.17
234 8 0.01
235 1 0.00
236 110 0.18
237 10 0.02
238 31 0.05
239 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (232 bp):
GAGGCTCAACTCACCTCTCGCATATGAGTTGATTTTTTTTGAAAGACAAAAATTGAAAATACCTC
AGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAA
TTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAA
TTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCC
Found at i:59388765 original size:151 final size:144
Alignment explanation
Indices: 59388022--59389093 Score: 842
Period size: 151 Copynumber: 7.1 Consensus size: 144
59388012 GCAGATATTG
* * * *
59388022 GAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGACGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTG-AAATTCCTCAGCGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
* ** ** *
59388087 GATTTTTGAAAA-ATAGAAATTGAAATTACCTCAGCACGTCTTGAGGCTCAACTCACCTCTCG-T
64 GATTTTTGAAAACAT--AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCA
59388150 A-ATGAGTTGATTTTTTT
127 ATATGAGTTGATTTTTTT
* * * * * ** *
59388167 GAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGT
1 GAAA-ACAGAAATTG-AAATTCCTCAGCGTGAC-CGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * *
59388232 TGATTTTTTTTTAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCA
63 TGA---TTTTTGAAAACATAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCG
59388297 CAATATGAGTTGAATTTTGAAACATAAATT
125 CAATATGAGTTG-ATTTT------T---TT
* * * * *
59388327 AAGAAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGC-A-ATGAGT
1 GA-AAACAGAAATTG-AAATTCCTCAGCGTG-ACCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
59388390 TGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCG
63 TGA--TTTTTGAAA-ACATAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCG
59388455 CAATATGAGTTGATTTTTTT
125 CAATATGAGTTGATTTTTTT
* * * **
59388475 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAATT-CCTCAGCGTGAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * **
59388540 GAATTTTG-AAACATAAATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAAC
64 GATTTTTGAAAACATAAATT--G-------AA-----AATACCTCAGCGTGTCTTGAGGCTCAAC
** * *
59388604 TCACCTCTCGCATTACGAGTTGATTTTTTTTT
115 TCATTTCTCGCAATATGAGTTGA--TTTTTTT
*
59388636 GAAAGATAGAAATTGAAAATTCCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGA
1 GAAA-ACAGAAATTG-AAATTCCTCAGC--GTG-ACCGAGGCTCAACTCACCTCTCGCAATATGA
* * *
59388701 GTTGATTTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGC
61 GTTGATTTTTGAAAACATAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGC
*
59388766 AATATGAGTTGA--ATTTT
126 AATATGAGTTGATTTTTTT
*
59388783 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAATT-CCTCAGCGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
*
59388848 GATTTTTTTTTTTGAAAA-ATAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
64 GA------TTTTTGAAAACAT--AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
* *
59388912 CTCGCAATCTGAGTTGA--ATTTT
121 CTCGCAATATGAGTTGATTTTTTT
* * * * **
59388934 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAAAAAAGCTCAACTCATTTCTCGCAATATG
1 GAAAACAGAAATTGAAATT-CCTCAGCGTGAC-CG----AGGCTCAACTCACCTCTCGCAATATG
* * * *
59388999 AGTTGAATTTTGAAAATAGAAA-T-AAAAGTTACCTCAACGTGTCTTGAGGCTCAACTCATTTCT
60 AGTTGATTTTTGAAAACATAAATTGAAAA--TACCTCAGCGTGTCTTGAGGCTCAACTCATTTCT
* * *
59389062 CGTAATATAAGTTGA--ATTTT
123 CGCAATATGAGTTGATTTTTTT
*
59389082 GAAAATAGAAAT
1 GAAAACAGAAAT
59389094 AAAACTATCA
Statistics
Matches: 772, Mismatches: 90, Indels: 127
0.78 0.09 0.13
Matches are distributed among these distances:
143 2 0.00
144 36 0.05
145 17 0.02
146 79 0.10
147 54 0.07
148 107 0.14
149 30 0.04
150 20 0.03
151 138 0.18
154 2 0.00
155 29 0.04
156 2 0.00
157 16 0.02
158 66 0.09
159 44 0.06
160 44 0.06
161 14 0.02
162 15 0.02
163 6 0.01
164 39 0.05
165 12 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (144 bp):
GAAAACAGAAATTGAAATTCCTCAGCGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAACATAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATAT
GAGTTGATTTTTTT
Found at i:59388966 original size:223 final size:223
Alignment explanation
Indices: 59388578--59389081 Score: 683
Period size: 223 Copynumber: 2.2 Consensus size: 223
59388568 AAATTGCCAA
* * * * *
59388578 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTACGAGTTGA-TTTTTTTTTGAAAGA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAA
* *
59388642 TAGAAATTGAAAATTCCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 TAGAAATTGAAAATACCTCAGCATGT--ACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* * *
59388707 TTTTGAAAACATAAATTGAAAATACCTCAACGTGTCTTG-AGGTTCAACTCATTACTCGCAATAT
129 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAAAGCTCAACTCATTACTCGCAATAT
*
59388771 GAGTTGAATTTTGAAAACAGAAATTGAAA-T
194 GAGTTGAATTTTGAAAACAGAAA-TAAAAGT
59388801 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTTGAAAA
* ** *
59388866 ATAGAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAA
65 ATAGAAATTGAAAATACCTCAGCATGTAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* *
59388930 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAAAAAAGCTCAACTCATTTCTCGCAA
129 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTG---AAAGCTCAACTCATTACTCGCAA
*
59388995 TATGAGTTGAATTTTGAAAATAGAAATAAAAGT
191 TATGAGTTGAATTTTGAAAACAGAAATAAAAGT
* * ** * * *
59389028 TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATAAGTTGAATTTT
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
59389082 GAAAATAGAA
Statistics
Matches: 248, Mismatches: 25, Indels: 13
0.87 0.09 0.05
Matches are distributed among these distances:
222 1 0.00
223 112 0.45
225 39 0.16
226 8 0.03
227 88 0.35
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (223 bp):
TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAA
TAGAAATTGAAAATACCTCAGCATGTACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAAAGCTCAACTCATTACTCGCAATATGA
GTTGAATTTTGAAAACAGAAATAAAAGT
Found at i:59397375 original size:96 final size:96
Alignment explanation
Indices: 59397273--59397526 Score: 490
Period size: 96 Copynumber: 2.6 Consensus size: 96
59397263 TACATGATAG
59397273 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
59397338 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 GAATGACCAATGTGATGAATGTGAAAGTGTA
59397369 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
59397434 GAATGACCAATGTGATGAATGTGAAAGTGTA
66 GAATGACCAATGTGATGAATGTGAAAGTGTA
*
59397465 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
59397527 TCCCGAAGGG
Statistics
Matches: 156, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 156 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGACCAATGTGATGAATGTGAAAGTGTA
Found at i:59397392 original size:49 final size:49
Alignment explanation
Indices: 59397273--59397526 Score: 421
Period size: 47 Copynumber: 5.3 Consensus size: 49
59397263 TACATGATAG
59397273 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
59397320 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
59397369 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
59397416 TATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
59397465 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
59397514 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
59397527 TCCCGAAGGG
Statistics
Matches: 193, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
47 99 0.51
48 1 0.01
49 93 0.48
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:59397695 original size:37 final size:37
Alignment explanation
Indices: 59397645--59397752 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
59397635 CCGAGCTCTA
59397645 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
59397682 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* * *
59397719 AAGACCCGATAACTTCGTGTGGAGATTACGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCG
59397753 AGCTAAAGGT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:59399378 original size:40 final size:40
Alignment explanation
Indices: 59399015--59399366 Score: 562
Period size: 40 Copynumber: 8.8 Consensus size: 40
59399005 GAGAATTGAG
*
59399015 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
59399055 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
59399095 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
59399135 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
59399175 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
59399215 AGTGATGTATCCGGGCTAAGTCTCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
59399255 AGTGATGTATCCGGACTAAGT-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
* * * ** *
59399295 AGTGATATATCTGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * * * *
59399335 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCA
59399367 ATCATGCTGG
Statistics
Matches: 292, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.00
40 291 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:59402710 original size:47 final size:47
Alignment explanation
Indices: 59402614--59402771 Score: 255
Period size: 49 Copynumber: 3.3 Consensus size: 47
59402604 GTACATGATA
59402614 GTATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
59402660 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
59402707 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATTAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
59402756 GTATAAATGTGATAAG
1 GTATATATGTGATAAG
59402772 TCCCGAAGGG
Statistics
Matches: 103, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
46 24 0.23
47 35 0.34
49 44 0.43
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
Found at i:59402982 original size:37 final size:37
Alignment explanation
Indices: 59402890--59402996 Score: 171
Period size: 36 Copynumber: 2.9 Consensus size: 37
59402880 CCGAGCTCTA
59402890 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
59402927 AAGA-CCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* * *
59402963 AAGACCCGATAACTTCGTGTGGAGATTACGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCG
59402997 AGCTAAAGGT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 35 0.55
37 29 0.45
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:59404627 original size:40 final size:40
Alignment explanation
Indices: 59404226--59404615 Score: 624
Period size: 40 Copynumber: 9.8 Consensus size: 40
59404216 GAGAATTGAG
*
59404226 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
59404266 A--GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
59404304 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
59404344 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
59404384 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
59404424 AGTGATGTATCTGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
59404464 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
59404504 AGTGATGTATCCGGACTAAGT-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
* * ** *
59404544 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * * * * *
59404584 GGTGTTATATCCGGGCTAGGTCCCAAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCA
59404616 ATCATGCTGG
Statistics
Matches: 329, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
38 37 0.11
39 1 0.00
40 291 0.88
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:59408226 original size:96 final size:96
Alignment explanation
Indices: 59408124--59408671 Score: 979
Period size: 96 Copynumber: 5.6 Consensus size: 96
59408114 TACATGATAG
59408124 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
59408189 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
*
59408220 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
59408285 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
*
59408316 TATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
* *
59408381 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
64 CCGAATGGCCAATGTGATGAATGTGAAAGTG----TA
59408418 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
59408483 TAATGGCCGATGTGATGAATGTGAAAGTGTA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
59408514 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
59408579 GAATGGCCAATGTGATGAATGTGAAAGTGTA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTA
*
59408610 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
59408672 TCCCGAAGGG
Statistics
Matches: 437, Mismatches: 9, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
96 297 0.68
98 45 0.10
100 47 0.11
102 48 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:59408243 original size:49 final size:49
Alignment explanation
Indices: 59408124--59408671 Score: 918
Period size: 49 Copynumber: 11.3 Consensus size: 49
59408114 TACATGATAG
59408124 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
59408171 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
59408220 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGATAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
59408267 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
59408316 TATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
59408365 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TA
59408418 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
59408465 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
59408514 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
59408561 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
59408610 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
59408659 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
59408672 TCCCGAAGGG
Statistics
Matches: 473, Mismatches: 16, Indels: 24
0.92 0.03 0.05
Matches are distributed among these distances:
47 191 0.40
48 1 0.00
49 232 0.49
53 49 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:59408653 original size:294 final size:292
Alignment explanation
Indices: 59408124--59408671 Score: 1042
Period size: 294 Copynumber: 1.9 Consensus size: 292
59408114 TACATGATAG
59408124 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
59408189 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
59408254 GAATGTGATAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
131 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
59408319 ATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
196 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-A-ATGTGATAAGGCCT
59408384 AATGGCCGATGTGATGAATGTGAAAGTGTATATA
259 AATGGCCGATGTGATGAATGTGAAAGTGTATATA
59408418 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
59408483 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
59408548 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
131 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
59408613 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
196 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
59408672 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
292 10 0.04
293 1 0.00
294 239 0.96
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (292 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:59408840 original size:37 final size:37
Alignment explanation
Indices: 59408790--59408891 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
59408780 CCGAGCTCTA
59408790 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
59408827 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
59408864 AAGACCCGATAACTTCGTGTGGAGATTA
1 AAGACCCGATGACTACGTGTGGAGATTA
59408892 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:59416438 original size:3 final size:3
Alignment explanation
Indices: 59416379--59416429 Score: 59
Period size: 3 Copynumber: 16.7 Consensus size: 3
59416369 AAGTACCTAT
* *
59416379 TAA TAA TAT TATA TAA -ATA TAA TAA TAA TAA TAA TAA TAA TAA CAA
1 TAA TAA TAA TA-A TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
59416425 TAA TA
1 TAA TA
59416430 GCAATAATAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 1 0.02
3 37 0.90
4 3 0.07
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:59416622 original size:3 final size:3
Alignment explanation
Indices: 59416616--59416868 Score: 84
Period size: 3 Copynumber: 82.7 Consensus size: 3
59416606 AATAGAAATG
* * *
59416616 TAA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA TATG TACA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A TAA
* * *
59416663 CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA TAA T-A TAGA -AA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* *
59416708 TTCAA -AA -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A
1 -T-AA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
59416750 TACA CTAA TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAA TAA TAT TAA
1 TA-A -TAA TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* * * *
59416798 GT-A TAG T-A TAAA TAA TATG TACA TAA CAG TAA TAA TAA TAA GTAA
1 -TAA TAA TAA T-AA TAA TA-A TA-A TAA TAA TAA TAA TAA TAA -TAA
*
59416843 CAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
59416869 TAGAAATTCA
Statistics
Matches: 184, Mismatches: 36, Indels: 60
0.66 0.13 0.21
Matches are distributed among these distances:
2 21 0.11
3 130 0.71
4 29 0.16
5 4 0.02
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:59416688 original size:19 final size:19
Alignment explanation
Indices: 59416660--59416696 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
59416650 AATATGTACA
*
59416660 TAACAGTAATAATAATAAG
1 TAACAATAATAATAATAAG
59416679 TAACAATAATAATAATAA
1 TAACAATAATAATAATAA
59416697 TAATATAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (19 bp):
TAACAATAATAATAATAAG
Found at i:59416814 original size:161 final size:166
Alignment explanation
Indices: 59416578--59416917 Score: 555
Period size: 161 Copynumber: 2.0 Consensus size: 166
59416568 ATATATAATA
*
59416578 AAAATATACACTAATATTTATAAATAATAATAGAAATGTAATAATAATAATAATATTAAGTATAG
1 AAAATATACACTAATATTTATAAATAATAATAG--ATGAAATAATAATAATAATATTAAGTATAG
59416643 TATAAATAATATGTACATAACAGTAATAATAATAAGTAAC-AATAATAATAATAATAATATAGAA
64 TATAAATAATATGTACATAACAGTAATAATAATAAGTAACAAATAATAATAATAATAATATAGAA
* *
59416707 ATTC-AAAAAAGTAAACATAATATAATGATATTAAAAT
129 ATTCAAAAAAACTAAACATAATATAATAATATTAAAAT
59416744 AAAATATACACTAATATTTATAAATAATAATAG-T-AAAT-ATAATAATAATATTAAGTATAGTA
1 AAAATATACACTAATATTTATAAATAATAATAGATGAAATAATAATAATAATATTAAGTATAGTA
59416806 TAAATAATATGTACATAACAGTAATAATAATAAGTAACAATAATAATAATAATAATAATAATATA
66 TAAATAATATGTACATAACAGTAATAATAATAAGTAAC----A-AATAATAATAATAATAATATA
59416871 GAAATTCAAAAAAACTAAACATAATATAATAATATTAAAAT
126 GAAATTCAAAAAAACTAAACATAATATAATAATATTAAAAT
59416912 AAAATA
1 AAAATA
59416918 ATTTAAAAAA
Statistics
Matches: 164, Mismatches: 3, Indels: 12
0.92 0.02 0.07
Matches are distributed among these distances:
161 62 0.38
162 3 0.02
163 1 0.01
166 33 0.20
167 28 0.17
168 37 0.23
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.31
Consensus pattern (166 bp):
AAAATATACACTAATATTTATAAATAATAATAGATGAAATAATAATAATAATATTAAGTATAGTA
TAAATAATATGTACATAACAGTAATAATAATAAGTAACAAATAATAATAATAATAATATAGAAAT
TCAAAAAAACTAAACATAATATAATAATATTAAAAT
Found at i:59416926 original size:16 final size:16
Alignment explanation
Indices: 59416893--59416925 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
59416883 AACTAAACAT
*
59416893 AATATAATAATATTAA
1 AATAAAATAATATTAA
59416909 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
59416924 AA
1 AA
59416926 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:59425324 original size:19 final size:18
Alignment explanation
Indices: 59425300--59425335 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
59425290 TTATATATTC
*
59425300 TTTATATATTTTTTAAAAT
1 TTTATA-ATTTTTCAAAAT
59425319 TTTATAATTTTTCAAAA
1 TTTATAATTTTTCAAAA
59425336 ATATATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTATAATTTTTCAAAAT
Found at i:59425336 original size:19 final size:19
Alignment explanation
Indices: 59425300--59425348 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
59425290 TTATATATTC
*
59425300 TTTATATATTTTTTAAAAT-
1 TTTATA-ATTTTTAAAAATA
59425319 TTTATAATTTTTCAAAAATA
1 TTTATAATTTTT-AAAAATA
*
59425339 TATATAATTT
1 TTTATAATTT
59425349 GGAATTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 11 0.42
20 9 0.35
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTATAATTTTTAAAAATA
Found at i:59425580 original size:20 final size:20
Alignment explanation
Indices: 59425555--59425593 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
59425545 GTTTTTACAT
59425555 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
59425575 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
59425594 TTTTAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:59429494 original size:16 final size:16
Alignment explanation
Indices: 59429466--59429511 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
59429456 TGCATATTTT
*
59429466 CACAGCTCACACATTA
1 CACAGCTCGCACATTA
*
59429482 CATAGCTCGCACATTA
1 CACAGCTCGCACATTA
*
59429498 CACAACTCGCACAT
1 CACAGCTCGCACAT
59429512 CATTGTAGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.35, C:0.37, G:0.09, T:0.20
Consensus pattern (16 bp):
CACAGCTCGCACATTA
Found at i:59429541 original size:49 final size:49
Alignment explanation
Indices: 59429469--59429564 Score: 133
Period size: 49 Copynumber: 2.0 Consensus size: 49
59429459 ATATTTTCAC
* *
59429469 AGCTCACACATTACATAGCTCGCACATTACACAACTCGCACATCATTGT
1 AGCTCACACATTACATAGCTCGCAAATTACACAACTCACACATCATTGT
*
59429518 AGCTCACACA-TAC-TATGACTCGCAAATTACACAGCTCACACATCATT
1 AGCTCACACATTACATA-G-CTCGCAAATTACACAACTCACACATCATT
59429565 ACGACTCGCA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
47 2 0.05
48 4 0.10
49 36 0.86
ACGTcount: A:0.34, C:0.32, G:0.09, T:0.24
Consensus pattern (49 bp):
AGCTCACACATTACATAGCTCGCAAATTACACAACTCACACATCATTGT
Found at i:59430936 original size:24 final size:24
Alignment explanation
Indices: 59430909--59430955 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
59430899 AAGAGGAAAA
* *
59430909 TGCCTGCGAAAGAGAGAGAGAGAT
1 TGCCTGAGAAAGAGAGAAAGAGAT
59430933 TGCCTGAGAAAGAGAGAAAGAGA
1 TGCCTGAGAAAGAGAGAAAGAGA
59430956 AGGAGAAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.11, G:0.36, T:0.11
Consensus pattern (24 bp):
TGCCTGAGAAAGAGAGAAAGAGAT
Found at i:59433835 original size:11 final size:12
Alignment explanation
Indices: 59433819--59433864 Score: 60
Period size: 11 Copynumber: 3.9 Consensus size: 12
59433809 TAGAGAACAT
59433819 ATATAT-AATTA
1 ATATATGAATTA
*
59433830 ATATATGAATTTG
1 ATATATGAA-TTA
59433843 ATATAT-AATTA
1 ATATATGAATTA
59433854 ATATATGAATT
1 ATATATGAATT
59433865 TGATTCATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 14 0.47
12 8 0.27
13 8 0.27
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.46
Consensus pattern (12 bp):
ATATATGAATTA
Found at i:59433851 original size:24 final size:24
Alignment explanation
Indices: 59433819--59433868 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
59433809 TAGAGAACAT
59433819 ATATATAATTAATATATGAATTTG
1 ATATATAATTAATATATGAATTTG
59433843 ATATATAATTAATATATGAATTTG
1 ATATATAATTAATATATGAATTTG
59433867 AT
1 AT
59433869 TCATACAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (24 bp):
ATATATAATTAATATATGAATTTG
Found at i:59433995 original size:136 final size:138
Alignment explanation
Indices: 59433845--59434127 Score: 482
Period size: 138 Copynumber: 2.1 Consensus size: 138
59433835 TGAATTTGAT
59433845 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-C-AATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* *
59433908 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGTCATGGAAATT-AATATTATT
66 AATATAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAAATATTATT
59433972 TTGGAAAGA
131 TTGGAAA-A
59433981 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
59434046 AATATAAACAGTTATATTAATTAATTTTGATCAGAATATAAAAGACATGGAAATTAAATATTCTT
66 AATATAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAAATATTATT
59434111 TTGGAAAA
131 TTGGAAAA
59434119 AGTATAATT
1 A-TATAATT
59434128 CTTTTTTCTA
Statistics
Matches: 138, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
136 54 0.39
137 1 0.01
138 61 0.44
139 22 0.16
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
AATATAAACAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAAATATTATT
TTGGAAAA
Found at i:59437453 original size:13 final size:13
Alignment explanation
Indices: 59437435--59437460 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59437425 GGAATTGTTC
59437435 AATTAAAGAATTT
1 AATTAAAGAATTT
59437448 AATTAAAGAATTT
1 AATTAAAGAATTT
59437461 TCTTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (13 bp):
AATTAAAGAATTT
Found at i:59438040 original size:68 final size:72
Alignment explanation
Indices: 59437961--59438097 Score: 201
Period size: 72 Copynumber: 2.0 Consensus size: 72
59437951 TTTTAGTAAT
* *
59437961 TTAATATTAAATTCAATTTAATACTTATC-T-TA-AT-AGTATTTTATTAATTTAATATTAAAGT
1 TTAATATTAAATTCAATTTAATACTTATCTTGTAGATAAATATTATATTAATTTAATATTAAAGT
59438022 GATTATC
66 GATTATC
* **
59438029 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAATATTATATTAATTTAATATTAAAGT
1 TTAATATTAAATTCAATTTAATACTTATCTTGTAGATAAATATTATATTAATTTAATATTAAAGT
59438094 GATT
66 GATT
59438098 TAGTTTAATC
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
68 26 0.43
69 1 0.02
70 2 0.03
71 2 0.03
72 29 0.48
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (72 bp):
TTAATATTAAATTCAATTTAATACTTATCTTGTAGATAAATATTATATTAATTTAATATTAAAGT
GATTATC
Found at i:59457507 original size:88 final size:87
Alignment explanation
Indices: 59457359--59457523 Score: 233
Period size: 88 Copynumber: 1.9 Consensus size: 87
59457349 GTGAATTCAC
* * * ** *
59457359 AGATCTTACCCCATAAGCAGTAGGGGAATAGATCGAAGGCAACGAGCTTTAACCTCCTAAGCAGT
1 AGATCTTACCCCATAAGCAGTAGGGAAACAGATCCAAAACAACGAGCTTTAACCCCCTAAGCAGT
59457424 AGGGTAACAAGCTAAAGTTCGT
66 AGGGTAACAAGCTAAAGTTCGT
* *
59457446 AGATCTTATCACCC-TAAGCAGTAGGGAAACAGATCCAAAATAATGAGCTTTAACCCCCTAAGCA
1 AGATCTTA-C-CCCATAAGCAGTAGGGAAACAGATCCAAAACAACGAGCTTTAACCCCCTAAGCA
59457510 GTAGGGTAACAAGC
64 GTAGGGTAACAAGC
59457524 CAAATTTACA
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
87 8 0.12
88 57 0.84
89 3 0.04
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (87 bp):
AGATCTTACCCCATAAGCAGTAGGGAAACAGATCCAAAACAACGAGCTTTAACCCCCTAAGCAGT
AGGGTAACAAGCTAAAGTTCGT
Found at i:59457543 original size:43 final size:42
Alignment explanation
Indices: 59457407--59457561 Score: 143
Period size: 44 Copynumber: 3.6 Consensus size: 42
59457397 GCAACGAGCT
* * *
59457407 TTAACCTCCTAAGCAGTAGGGTAACAAGCTAAAGTT-CGTAGATC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAA-TTAC--AGACC
* * * * * *
59457451 TTATCACCCTAAGCAGTAGGGAAACAGATCCAAAATA-ATGAGCT
1 TTAACCCCCTAAGCAGTAGGGTAACA-AGCCAAATTACA-GA-CC
59457495 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGACC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAA-TTACAGACC
*
59457538 TTAACCCCCTAAGTAGTAGGGTAA
1 TTAACCCCCTAAGCAGTAGGGTAA
59457562 TAGGCTGAAA
Statistics
Matches: 89, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 1 0.01
43 32 0.36
44 50 0.56
45 6 0.07
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.22
Consensus pattern (42 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTACAGACC
Found at i:59457810 original size:43 final size:43
Alignment explanation
Indices: 59457720--59457873 Score: 157
Period size: 43 Copynumber: 3.6 Consensus size: 43
59457710 ATGAGTCTTA
* * * * *
59457720 AACCCCTAAGTAGTAGGATAACAGGTTAAATTTACAGACCTTA
1 AACCCCTAAGCAGTAGGGTAACAGGTTGAATTTAAAGACCTTT
* **
59457763 AACCCCTAAGCAGTAGGGTAACAGGTTGAATTCAAAGGGCTTT
1 AACCCCTAAGCAGTAGGGTAACAGGTTGAATTTAAAGACCTTT
* * * *
59457806 AACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTGAAGATC-TT
1 AA-CCCCTAAGCAGTAGGGTAACAGGTTGAATTTAAAGACCTTT
* *
59457849 ATCACCCTAAGCAGTAGGGAAACAG
1 AAC-CCCTAAGCAGTAGGGTAACAG
59457874 ATCAAAGAAG
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 1 0.01
43 59 0.64
44 32 0.35
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (43 bp):
AACCCCTAAGCAGTAGGGTAACAGGTTGAATTTAAAGACCTTT
Found at i:59457823 original size:44 final size:44
Alignment explanation
Indices: 59457675--59457914 Score: 164
Period size: 44 Copynumber: 5.5 Consensus size: 44
59457665 TATAGATCTC
* * * ** * * * *
59457675 AACCCCCTAAACAGTAGGGAAACAGATTGAAGATGATGAGTCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTAAAGGGCCTT
* * * * * *
59457719 AAACCCCTAAGTAGTAGGATAACAGGTTAAATTTACA-GACCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTAAAGGGCCTT
* * *
59457762 AAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCAAAGGGCTTT
1 AACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTAAAGGGCCTT
* * * **
59457806 AACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTGAA-GATCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTAAAGGGCCTT
* * * * * **
59457849 ATCACCCTAAGCAGTAGGGAAACA-GATCAA-AGAAGATGGGCCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTAA-A-GGGCCTT
59457893 AACCCCCTAAGCAGTAGGGTAA
1 AACCCCCTAAGCAGTAGGGTAA
59457915 TAGGCTAAAA
Statistics
Matches: 149, Mismatches: 43, Indels: 8
0.75 0.22 0.04
Matches are distributed among these distances:
41 1 0.01
42 5 0.03
43 59 0.40
44 84 0.56
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (44 bp):
AACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTAAAGGGCCTT
Found at i:59457895 original size:87 final size:87
Alignment explanation
Indices: 59457678--59457932 Score: 230
Period size: 87 Copynumber: 2.9 Consensus size: 87
59457668 AGATCTCAAC
* ** * * * * * *
59457678 CCCCTAAACAGTAGGGAAACAGATTGAAGATGATGAGTCTTAAACCCCTAAGTAGTAGGATAACA
1 CCCCTAAGCAGTAGGGAAACAGATCAAAGAAGATGGGCCTTAACCCCCTAAGCAGTAGGGTAACA
* *
59457743 GGTTAAATTTACAGACCTTAAA
66 AGCTAAATTTACAGACCTTAAA
* * * ** *
59457765 CCCCTAAGCAGTAGGGTAACAGGTTGAATTCAA-A-GGGCTTTAACCCCCTAAGCAGTAGGGTAA
1 CCCCTAAGCAGTAGGGAAACA-GATCAA-AGAAGATGGGCCTTAACCCCCTAAGCAGTAGGGTAA
* * *
59457828 CAAGCTGAATTTGA-AGATCTT-AT
64 CAAGCTAAATTT-ACAGACCTTAAA
*
59457851 CACCCTAAGCAGTAGGGAAACAGATCAAAGAAGATGGGCCTTAACCCCCTAAGCAGTAGGGTAAT
1 C-CCCTAAGCAGTAGGGAAACAGATCAAAGAAGATGGGCCTTAACCCCCTAAGCAGTAGGGTAAC
* *
59457916 AGGCTAAAAATTACAGA
65 AAGCT-AAATTTACAGA
59457933 TTTCGTCTCC
Statistics
Matches: 131, Mismatches: 29, Indels: 15
0.75 0.17 0.09
Matches are distributed among these distances:
85 2 0.02
86 7 0.05
87 109 0.83
88 12 0.09
89 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (87 bp):
CCCCTAAGCAGTAGGGAAACAGATCAAAGAAGATGGGCCTTAACCCCCTAAGCAGTAGGGTAACA
AGCTAAATTTACAGACCTTAAA
Found at i:59459012 original size:24 final size:23
Alignment explanation
Indices: 59458968--59459013 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
59458958 TCATTTATAC
* *
59458968 ATATAAATAAAGAACATAAAAAA
1 ATATAAAAAAAGAACAAAAAAAA
*
59458991 ATATAAAAAAAAGAAGAAAAAAA
1 ATAT-AAAAAAAGAACAAAAAAA
59459014 TTACCCCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (23 bp):
ATATAAAAAAAGAACAAAAAAAA
Found at i:59460131 original size:3 final size:3
Alignment explanation
Indices: 59460123--59460159 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
59460113 ATCTATATAG
59460123 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
59460160 CCTAATATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:59471394 original size:16 final size:16
Alignment explanation
Indices: 59471375--59471405 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
59471365 CTTCTTCACT
59471375 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
59471391 TACTTACTTACTTAA
1 TACTCACTTACTTAA
59471406 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:59471411 original size:20 final size:20
Alignment explanation
Indices: 59471372--59471411 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
59471362 AAACTTCTTC
* *
59471372 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
59471392 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
59471412 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:59471455 original size:24 final size:24
Alignment explanation
Indices: 59471425--59471472 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
59471415 TTAATACATT
59471425 TTACTTACCTTTTTCCTTGTCAAG
1 TTACTTACCTTTTTCCTTGTCAAG
59471449 TTACTTACCTTTTTCCTTGTCAAG
1 TTACTTACCTTTTTCCTTGTCAAG
59471473 CATACATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.25, G:0.08, T:0.50
Consensus pattern (24 bp):
TTACTTACCTTTTTCCTTGTCAAG
Found at i:59471875 original size:55 final size:54
Alignment explanation
Indices: 59471621--59471875 Score: 235
Period size: 55 Copynumber: 4.8 Consensus size: 54
59471611 ACACGGGTAC
* * * *
59471621 CTTACC-ATTGCCATGACTTGTCACGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
59471670 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGT-TGCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTAT-CCTTGCCTTA-GAAA
* * * * *
59471723 CTCACCAA-TGCGATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * *
59471778 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
59471831 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
59471876 AAACCCTAAT
Statistics
Matches: 167, Mismatches: 24, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
48 1 0.01
49 37 0.22
52 4 0.02
53 42 0.25
54 12 0.07
55 69 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:59478944 original size:16 final size:16
Alignment explanation
Indices: 59478925--59478955 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
59478915 CTTCTTCACT
59478925 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
59478941 TACTTACTTACTTAA
1 TACTCACTTACTTAA
59478956 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:59478961 original size:20 final size:20
Alignment explanation
Indices: 59478922--59478961 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
59478912 AAACTTCTTC
* *
59478922 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
59478942 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
59478962 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:59479278 original size:53 final size:54
Alignment explanation
Indices: 59479147--59479401 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
59479137 TCACGGGTAC
* * * *
59479147 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
59479196 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
59479249 CTCACCAATGCCATGCCTTGGCATTGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
59479304 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
59479357 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
59479402 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 48 0.28
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:59479338 original size:108 final size:110
Alignment explanation
Indices: 59479194--59479391 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
59479184 ATCCTTTTGA
* *
59479194 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
*
59479257 -TGCCATGCCTTGGCATTGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
59479302 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
59479367 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
59479392 CGGTATCCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.60
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:59481542 original size:14 final size:14
Alignment explanation
Indices: 59481523--59481565 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
59481513 ACTAACGATG
59481523 AATTAAACCATTAT
1 AATTAAACCATTAT
59481537 AATTAAACCATTAT
1 AATTAAACCATTAT
*
59481551 GATTAAA-CATTAT
1 AATTAAACCATTAT
59481564 AA
1 AA
59481566 ATATTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 7 0.26
14 20 0.74
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:59483409 original size:43 final size:43
Alignment explanation
Indices: 59483361--59483460 Score: 116
Period size: 42 Copynumber: 2.3 Consensus size: 43
59483351 TCGGATGTGG
* *
59483361 TCTTACATGTAATTCAG-TATCAATGCCTCA-GTCCCAGACAAGA
1 TCTTACACGTAAATCAGATA-CAATGCCT-ATGTCCCAGACAAGA
* * *
59483404 TCTTACACG-AAATCAGATACGATGCCTATGTCCCAGACATGG
1 TCTTACACGTAAATCAGATACAATGCCTATGTCCCAGACAAGA
59483446 TCTTACACGTAAATC
1 TCTTACACGTAAATC
59483461 TCAAATCGAG
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.02
42 33 0.67
43 15 0.31
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
TCTTACACGTAAATCAGATACAATGCCTATGTCCCAGACAAGA
Found at i:59483484 original size:44 final size:44
Alignment explanation
Indices: 59483391--59483506 Score: 139
Period size: 44 Copynumber: 2.7 Consensus size: 44
59483381 CAATGCCTCA
* * *
59483391 GTCCCAGACAAGATCTTACACGAAA--TCAGATACGATGCCTAT
1 GTCCCAGACAAGGTCTTACACGAAATCTCAAATACGAGGCCTAT
* *
59483433 GTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGAGGCCTGT
1 GTCCCAGACAAGGTCTTACACG-AAATCTCAAATACGAGGCCTAT
* *
59483477 GTCCCAGACACGGTCTTACACGATATCTCA
1 GTCCCAGACAAGGTCTTACACGAAATCTCA
59483507 GATCAATGTC
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 20 0.31
43 10 0.16
44 29 0.45
45 5 0.08
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (44 bp):
GTCCCAGACAAGGTCTTACACGAAATCTCAAATACGAGGCCTAT
Found at i:59487405 original size:20 final size:20
Alignment explanation
Indices: 59487357--59487407 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
59487347 TTTCGACTTT
* *
59487357 GATTTGGGGAAAAATTTAGG
1 GATTTGGGGAAAAAGTTAAG
*
59487377 GA-TTAGGGAAAAAGTTAAG
1 GATTTGGGGAAAAAGTTAAG
59487396 GATTTGGGGAAA
1 GATTTGGGGAAA
59487408 TTTTGTTGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.39, C:0.00, G:0.35, T:0.25
Consensus pattern (20 bp):
GATTTGGGGAAAAAGTTAAG
Found at i:59488492 original size:15 final size:14
Alignment explanation
Indices: 59488472--59488542 Score: 54
Period size: 15 Copynumber: 4.8 Consensus size: 14
59488462 TTAGGTTTTT
59488472 GGTTTAGAGTTTAAA
1 GGTTTAGAGTTT-AA
*
59488487 GGTTTAAAGATTT-A
1 GGTTTAGAG-TTTAA
*
59488501 GTTTCTAGAGTTTAA
1 GGTT-TAGAGTTTAA
*
59488516 GGTTTTAGGGTTTAAA
1 GG-TTTAGAGTTT-AA
*
59488532 GGTTTATAGTT
1 GGTTTAGAGTT
59488543 CATGGGTTAG
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
14 7 0.16
15 28 0.64
16 9 0.20
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.45
Consensus pattern (14 bp):
GGTTTAGAGTTTAA
Found at i:59488629 original size:21 final size:21
Alignment explanation
Indices: 59488555--59488630 Score: 75
Period size: 21 Copynumber: 3.6 Consensus size: 21
59488545 TGGGTTAGGA
* *
59488555 TTTAGGGGTTATGCTTTAGAT
1 TTTAGGGTTTAGGCTTTAGAT
59488576 TTTAGGGTTTAGG-TGTTA-ATT
1 TTTAGGGTTTAGGCT-TTAGA-T
** *
59488597 TTTAGGAATTAGGCTTTAGAG
1 TTTAGGGTTTAGGCTTTAGAT
59488618 TTTAGGGTTTAGG
1 TTTAGGGTTTAGG
59488631 GGCTAAAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
20 2 0.05
21 40 0.91
22 2 0.05
ACGTcount: A:0.21, C:0.03, G:0.30, T:0.46
Consensus pattern (21 bp):
TTTAGGGTTTAGGCTTTAGAT
Found at i:59489209 original size:41 final size:40
Alignment explanation
Indices: 59489156--59489308 Score: 148
Period size: 41 Copynumber: 3.8 Consensus size: 40
59489146 ACCTTTTGTG
* * *
59489156 GCGTTTGGACAAAAAAGCCACAATTGCTCAGATTTTAGCA
1 GCGTTTGAACAAAAACGCCACTATTGCTCAGATTTTAGCA
* *
59489196 GCGTTTGAAACAAAAACGCCACTATTGAC-CAAATTTTTGCA
1 GCGTTTG-AACAAAAACGCCACTATTG-CTCAGATTTTAGCA
* * * * *
59489237 GCGTTTGGACCAAAGACGCTACTATTGCTCAGTTTTTAGCG
1 GCGTTT-GAACAAAAACGCCACTATTGCTCAGATTTTAGCA
*
59489278 GCGTTT-AGTCTAAAAACGCCACTATTGCTCA
1 GCGTTTGA-AC-AAAAACGCCACTATTGCTCA
59489309 ACTTTTTGCG
Statistics
Matches: 92, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
39 1 0.01
40 9 0.10
41 80 0.87
42 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (40 bp):
GCGTTTGAACAAAAACGCCACTATTGCTCAGATTTTAGCA
Found at i:59489276 original size:82 final size:81
Alignment explanation
Indices: 59489126--59489317 Score: 208
Period size: 82 Copynumber: 2.4 Consensus size: 81
59489116 GTTTGGATAA
* * ** **
59489126 AAAAACACCACTATAGCTCAACCTTTTGTGGCGTTTGGACAAAAAAGCCACAATTGCTCAGATTT
1 AAAAACGCCACTATTGCTCAAATTTTTGCAGCGTTTGGACAAAAAAGCCACAATTGCTCAGATTT
59489191 TAGCAGCGTTTGAAAC-
66 TAGCAGCGTTT-AAACT
* * * * *
59489207 AAAAACGCCACTATTGAC-CAAATTTTTGCAGCGTTTGGACCAAAGACGCTACTATTGCTCAGTT
1 AAAAACGCCACTATTG-CTCAAATTTTTGCAGCGTTTGGA-CAAAAAAGCCACAATTGCTCAGAT
* **
59489271 TTTAGCGGCGTTTAGTCT
64 TTTAGCAGCGTTTAAACT
*
59489289 AAAAACGCCACTATTGCTCAACTTTTTGC
1 AAAAACGCCACTATTGCTCAAATTTTTGC
59489318 GGTGTTTTCT
Statistics
Matches: 92, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
81 34 0.37
82 58 0.63
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (81 bp):
AAAAACGCCACTATTGCTCAAATTTTTGCAGCGTTTGGACAAAAAAGCCACAATTGCTCAGATTT
TAGCAGCGTTTAAACT
Found at i:59491821 original size:96 final size:93
Alignment explanation
Indices: 59491689--59491869 Score: 238
Period size: 96 Copynumber: 1.9 Consensus size: 93
59491679 AATAGATACC
** *
59491689 ATTTGTGTATTATAAAAAAATTCAAACTTTCTAAAGGTCCTTACACTCTTTTGAAAATTTAAATT
1 ATTTGTGTATTATAAAAAAATTCAAACTTTAAAAAGGACCTTACACTCTTTTGAAAATTTAAATT
* *
59491754 TAATCCCTATATTTTAATTTTGAGACAA
66 TAATCCCTACACTTTAATTTTGAGACAA
* * *
59491782 ATTTTTGTATTATAAAAATAATGTTCAAA-TTTGAAAAAGGACCTTATACTCTTTTGAAATTTTA
1 ATTTGTGTATTATAAAAA-AA--TTCAAACTTT-AAAAAGGACCTTACACTCTTTTGAAAATTTA
*
59491846 AATTTAGTCCCTACACTTTAATTT
62 AATTTAATCCCTACACTTTAATTT
59491870 AAAGATATTG
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
93 17 0.23
94 2 0.03
95 3 0.04
96 53 0.71
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (93 bp):
ATTTGTGTATTATAAAAAAATTCAAACTTTAAAAAGGACCTTACACTCTTTTGAAAATTTAAATT
TAATCCCTACACTTTAATTTTGAGACAA
Found at i:59491915 original size:31 final size:31
Alignment explanation
Indices: 59491857--59491916 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
59491847 ATTTAGTCCC
* *
59491857 TACACTTTAATTTAAAGATATTGATTCCTTG
1 TACACTTTAATTTAAAAATATTAATTCCTTG
* * *
59491888 TACATTTTTATTTAAAAATCTTAATTCCT
1 TACACTTTAATTTAAAAATATTAATTCCT
59491917 CTGTCCAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.33, C:0.13, G:0.05, T:0.48
Consensus pattern (31 bp):
TACACTTTAATTTAAAAATATTAATTCCTTG
Found at i:59493759 original size:29 final size:29
Alignment explanation
Indices: 59493719--59493787 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
59493709 ATTTCAAAAA
*
59493719 AAAAATTA-TAAAACTAGTTT-TAAAAATT
1 AAAAATTATTAAAACTA-TTTAAAAAAATT
*
59493747 AAAAATTATTAAAATTATTTAAAAAAATT
1 AAAAATTATTAAAACTATTTAAAAAAATT
* *
59493776 AAATATTTTTAA
1 AAAAATTATTAA
59493788 TATAAAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.31
29 24 0.69
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (29 bp):
AAAAATTATTAAAACTATTTAAAAAAATT
Found at i:59496649 original size:6 final size:7
Alignment explanation
Indices: 59496623--59496652 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
59496613 AGCTTTTGTG
59496623 AAATTTT
1 AAATTTT
59496630 AAATTTT
1 AAATTTT
59496637 AAATTTT
1 AAATTTT
59496644 -AATTTT
1 AAATTTT
59496650 AAA
1 AAA
59496653 ATGTTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
AAATTTT
Found at i:59496654 original size:14 final size:13
Alignment explanation
Indices: 59496623--59496652 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
59496613 AGCTTTTGTG
59496623 AAATTTTAAATTTT
1 AAATTTT-AATTTT
59496637 AAATTTTAATTTT
1 AAATTTTAATTTT
59496650 AAA
1 AAA
59496653 ATGTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
AAATTTTAATTTT
Found at i:59497132 original size:9 final size:10
Alignment explanation
Indices: 59497106--59497135 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
59497096 ATGTTATAAA
59497106 AAAATAAATTC
1 AAAA-AAATTC
59497117 AAAAAAATTC
1 AAAAAAATTC
59497127 AAAAAAATT
1 AAAAAAATT
59497136 ACTTGTTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:59499391 original size:22 final size:22
Alignment explanation
Indices: 59499340--59499382 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
59499330 TGTACAAGCC
59499340 ACCACATAATTGCTAATAAACA
1 ACCACATAATTGCTAATAAACA
59499362 ACCACATAATTG-TAGATAAAC
1 ACCACATAATTGCTA-ATAAAC
59499383 TGTCACATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.49, C:0.21, G:0.07, T:0.23
Consensus pattern (22 bp):
ACCACATAATTGCTAATAAACA
Found at i:59504587 original size:61 final size:61
Alignment explanation
Indices: 59504488--59504603 Score: 182
Period size: 61 Copynumber: 1.9 Consensus size: 61
59504478 TTGTTATTAA
*
59504488 ATTTTAATAAGATTATTATTAAATATAATTTAATAAAAATAAAAATGA-ATAATTTTATCAT
1 ATTTTAATAAGATTATTATTAAATATAATTTAAGAAAAATAAAAAT-ATATAATTTTATCAT
*
59504549 ATTTTAATATA-ATTATTATTAAATATAATTTAAGAAAAATAATAATATATAATTT
1 ATTTTAATA-AGATTATTATTAAATATAATTTAAGAAAAATAAAAATATATAATTT
59504604 AATAACATCC
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
60 1 0.02
61 49 0.96
62 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.44
Consensus pattern (61 bp):
ATTTTAATAAGATTATTATTAAATATAATTTAAGAAAAATAAAAATATATAATTTTATCAT
Found at i:59509353 original size:21 final size:21
Alignment explanation
Indices: 59509332--59509426 Score: 88
Period size: 21 Copynumber: 4.7 Consensus size: 21
59509322 GGCTTCACCA
59509332 CCGCCTTCTTTCTTCT--CC-
1 CCGCCTTCTTTCTTCTCCCCG
* * *
59509350 CCACCTTCCTTCTTCTCTCCG
1 CCGCCTTCTTTCTTCTCCCCG
59509371 CCGCCTTCTTTCTTCTCCCCG
1 CCGCCTTCTTTCTTCTCCCCG
* * * * *
59509392 CCTCCTCCTTCCTTCTTCTCG
1 CCGCCTTCTTTCTTCTCCCCG
*
59509413 CCGCCTTCCTTCTT
1 CCGCCTTCTTTCTT
59509427 TCCACCTCCT
Statistics
Matches: 60, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
18 14 0.23
20 2 0.03
21 44 0.73
ACGTcount: A:0.01, C:0.52, G:0.06, T:0.41
Consensus pattern (21 bp):
CCGCCTTCTTTCTTCTCCCCG
Found at i:59509375 original size:39 final size:41
Alignment explanation
Indices: 59509332--59509453 Score: 148
Period size: 39 Copynumber: 3.0 Consensus size: 41
59509322 GGCTTCACCA
59509332 CCGCCTTCTTTCTTCTCCCCACCT-TCCTT-CTTC-TCTCCG
1 CCGCCTTCTTTCTTCTCCCCACCTCTCCTTCCTTCTTCT-CG
*
59509371 CCGCCTTCTTTCTTCTCCCCGCCTCCTCCTTCCTTCTTCTCG
1 CCGCCTTCTTTCTTCTCCCCACCT-CTCCTTCCTTCTTCTCG
* *
59509413 CCGCCTTCCTTCTT-T--CCACCTCCTCCTTCCTCCTTCTCG
1 CCGCCTTCTTTCTTCTCCCCACCT-CTCCTTCCTTCTTCTCG
59509452 CC
1 CC
59509454 TCCGCCCGCA
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
39 47 0.63
41 6 0.08
42 19 0.25
43 3 0.04
ACGTcount: A:0.02, C:0.53, G:0.06, T:0.39
Consensus pattern (41 bp):
CCGCCTTCTTTCTTCTCCCCACCTCTCCTTCCTTCTTCTCG
Found at i:59509392 original size:18 final size:18
Alignment explanation
Indices: 59509332--59509394 Score: 81
Period size: 18 Copynumber: 3.3 Consensus size: 18
59509322 GGCTTCACCA
59509332 CCGCCTTCTTTCTTCTCC
1 CCGCCTTCTTTCTTCTCC
* *
59509350 CCACCTTCCTTCTTCTCTCC
1 CCGCCTTCTTTC-T-TCTCC
59509370 GCCGCCTTCTTTCTTCTCC
1 -CCGCCTTCTTTCTTCTCC
59509389 CCGCCT
1 CCGCCT
59509395 CCTCCTTCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
18 16 0.42
19 6 0.16
20 6 0.16
21 10 0.26
ACGTcount: A:0.02, C:0.52, G:0.06, T:0.40
Consensus pattern (18 bp):
CCGCCTTCTTTCTTCTCC
Found at i:59509401 original size:24 final size:22
Alignment explanation
Indices: 59509335--59509428 Score: 99
Period size: 24 Copynumber: 4.4 Consensus size: 22
59509325 TTCACCACCG
*
59509335 CCTTCTTTCTTCTCCCCACCTT
1 CCTTCTTTCTTCTCCCCGCCTT
*
59509357 CCTTC-TTC-TCT--CCGCC-G
1 CCTTCTTTCTTCTCCCCGCCTT
59509374 CCTTCTTTCTTCTCCCCGCCTCCT
1 CCTTCTTTCTTCTCCCCGCCT--T
* *
59509398 CCTTCCTTCTTCTCGCCGCCTT
1 CCTTCTTTCTTCTCCCCGCCTT
59509420 CCTTCTTTC
1 CCTTCTTTC
59509429 CACCTCCTCC
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
17 5 0.08
18 7 0.12
19 3 0.05
20 3 0.05
21 8 0.14
22 14 0.24
24 19 0.32
ACGTcount: A:0.01, C:0.51, G:0.05, T:0.43
Consensus pattern (22 bp):
CCTTCTTTCTTCTCCCCGCCTT
Found at i:59509455 original size:21 final size:20
Alignment explanation
Indices: 59509390--59509456 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
59509380 TTCTTCTCCC
59509390 CGCCTCCTCCTTCCTTCTTCT
1 CGCCTCCTCCTTCC-TCTTCT
*
59509411 CGCCGCCTTCCTT-CT-TTC-
1 CGCCTCC-TCCTTCCTCTTCT
*
59509429 CACCTCCTCCTTCCTCCTTCT
1 CGCCTCCTCCTTCCT-CTTCT
59509450 CGCCTCC
1 CGCCTCC
59509457 GCCCGCAGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
17 5 0.14
18 7 0.19
19 3 0.08
20 4 0.11
21 13 0.35
22 5 0.14
ACGTcount: A:0.01, C:0.55, G:0.06, T:0.37
Consensus pattern (20 bp):
CGCCTCCTCCTTCCTCTTCT
Found at i:59512532 original size:13 final size:13
Alignment explanation
Indices: 59512514--59512538 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59512504 AATTATAAAT
59512514 TTTAATATTTTAC
1 TTTAATATTTTAC
59512527 TTTAATATTTTA
1 TTTAATATTTTA
59512539 AAATAATAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTAATATTTTAC
Found at i:59512726 original size:24 final size:25
Alignment explanation
Indices: 59512684--59512731 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
59512674 TTATTTCTTA
*
59512684 ATTTTTAATATTTATAAATGAAATT
1 ATTTTTAATATTTATAAATAAAATT
59512709 ATTTTTAACTA-TTA-AAATAAAAT
1 ATTTTTAA-TATTTATAAATAAAAT
59512732 AGTTGCAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 11 0.52
26 2 0.10
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (25 bp):
ATTTTTAATATTTATAAATAAAATT
Found at i:59513817 original size:30 final size:28
Alignment explanation
Indices: 59513740--59513818 Score: 68
Period size: 30 Copynumber: 2.7 Consensus size: 28
59513730 AATATATTAT
*
59513740 TTCAATTAATGGAATTAAATGAAAAATT
1 TTCAATTAATGGAATTAAATGAAAAATC
* * ***
59513768 TATTAATCATATTTTATTAAATGAAAATAATC
1 T-TCAATTA-ATGGAATTAAATG-AAA-AATC
59513800 TTCAATTAATGGAATTAAA
1 TTCAATTAATGGAATTAAA
59513819 GACATCGATT
Statistics
Matches: 36, Mismatches: 11, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
28 1 0.03
29 5 0.14
30 18 0.50
31 8 0.22
32 4 0.11
ACGTcount: A:0.48, C:0.05, G:0.08, T:0.39
Consensus pattern (28 bp):
TTCAATTAATGGAATTAAATGAAAAATC
Found at i:59514893 original size:32 final size:31
Alignment explanation
Indices: 59514843--59514919 Score: 84
Period size: 32 Copynumber: 2.5 Consensus size: 31
59514833 ATCATAAGCT
* * *
59514843 TATAAACTGATTACTTTAATTT-AGTAACTCA
1 TATAAATTAATTAATTTAATTTGA-TAACTCA
59514874 TGATAAATTAATTAATTTAATTTGATAACTCA
1 T-ATAAATTAATTAATTTAATTTGATAACTCA
**
59514906 TATTGATTAATTAA
1 TATAAATTAATTAA
59514920 ACTTGTTAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
31 12 0.31
32 26 0.67
33 1 0.03
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (31 bp):
TATAAATTAATTAATTTAATTTGATAACTCA
Found at i:59518470 original size:20 final size:20
Alignment explanation
Indices: 59518427--59518471 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
59518417 ATCTAAACAC
59518427 CAGAAAAGTAAATAATTTTT
1 CAGAAAAGTAAATAATTTTT
*
59518447 -AGAAAAGTAAATCATTTTT
1 CAGAAAAGTAAATAATTTTT
59518466 CAGAAA
1 CAGAAA
59518472 TTATTTTCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (20 bp):
CAGAAAAGTAAATAATTTTT
Found at i:59518991 original size:5 final size:6
Alignment explanation
Indices: 59518978--59519019 Score: 57
Period size: 6 Copynumber: 6.5 Consensus size: 6
59518968 ATAATTTAAT
59518978 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAATTAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAA-TAA AAA
59519020 AACATATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 21 0.64
7 6 0.18
8 6 0.18
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:59519000 original size:14 final size:12
Alignment explanation
Indices: 59518978--59519019 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 12
59518968 ATAATTTAAT
59518978 AAATAAAAATAA
1 AAATAAAAATAA
59518990 AAATCTAAAAATAA
1 AAA--TAAAAATAA
59519004 AAATAAAAATTAA
1 AAATAAAAA-TAA
59519017 AAA
1 AAA
59519020 AACATATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 9 0.33
13 6 0.22
14 12 0.44
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (12 bp):
AAATAAAAATAA
Found at i:59519003 original size:20 final size:19
Alignment explanation
Indices: 59518973--59519019 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
59518963 TACAAATAAT
59518973 TTAATAAATAAAAATAAAAA
1 TTAA-AAATAAAAATAAAAA
59518993 TCTAAAAATAAAAATAAAAA
1 T-TAAAAATAAAAATAAAAA
59519013 TTAAAAA
1 TTAAAAA
59519020 AACATATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.23
20 17 0.65
21 3 0.12
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (19 bp):
TTAAAAATAAAAATAAAAA
Found at i:59519054 original size:9 final size:9
Alignment explanation
Indices: 59519040--59519071 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
59519030 TTTATACAAA
59519040 TAATTCGGT
1 TAATTCGGT
59519049 TAATTCGGT
1 TAATTCGGT
59519058 TAATTCGGT
1 TAATTCGGT
59519067 TAATT
1 TAATT
59519072 TTATACTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.25, C:0.09, G:0.19, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:59527434 original size:22 final size:19
Alignment explanation
Indices: 59527396--59527436 Score: 55
Period size: 22 Copynumber: 2.0 Consensus size: 19
59527386 TTTCTAAAAA
59527396 TATTTTTAATTTTTTAGAT
1 TATTTTTAATTTTTTAGAT
59527415 TATTGTTTAATCTATTTTAGAT
1 TATT-TTTAAT-T-TTTTAGAT
59527437 GAAATTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
TATTTTTAATTTTTTAGAT
Found at i:59528926 original size:119 final size:119
Alignment explanation
Indices: 59528765--59528994 Score: 334
Period size: 119 Copynumber: 1.9 Consensus size: 119
59528755 ATAATTGAAG
*
59528765 TGCAGAAATCAACAAAGAGCTTGCTGAATCTACAAGTCAGATTCCCCAAAGAACACGAATGAAAA
1 TGCAGAAATCAACAAAGAGCTTGCTGAATCCACAAGTCAGATTCCCCAAAGAACACGAATGAAAA
** *
59528830 TAAAACTAAAAAAAAATTGTAAGCATAAAACAAACTAAAAACTAAATCCAAAAA
66 TAAAACTAAAAAAAAATCCTAAGCACAAAACAAACTAAAAACTAAATCCAAAAA
* * * * *
59528884 TGCAGAAATCCACAAAGAGTTTGTTGAATCCACAAGTTAGATTCCCCGAAGAACACGAATGAAAA
1 TGCAGAAATCAACAAAGAGCTTGCTGAATCCACAAGTCAGATTCCCCAAAGAACACGAATGAAAA
* * * **
59528949 TAGAACTAAAAAGAAATCCTAAGTACAAAAGGAACTAAAAACTAAA
66 TAAAACTAAAAAAAAATCCTAAGCACAAAACAAACTAAAAACTAAA
59528995 AGAAAAGTTC
Statistics
Matches: 97, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
119 97 1.00
ACGTcount: A:0.52, C:0.17, G:0.13, T:0.17
Consensus pattern (119 bp):
TGCAGAAATCAACAAAGAGCTTGCTGAATCCACAAGTCAGATTCCCCAAAGAACACGAATGAAAA
TAAAACTAAAAAAAAATCCTAAGCACAAAACAAACTAAAAACTAAATCCAAAAA
Found at i:59532574 original size:46 final size:46
Alignment explanation
Indices: 59532519--59532692 Score: 142
Period size: 46 Copynumber: 3.7 Consensus size: 46
59532509 TCACTTATGT
*
59532519 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATG-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-GCCACATTATGAA
* *
59532565 GAGCCAGTGTAATACCATGTCTGGGACATGGCATCG--GCATTGA-GACAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGCCACATT-ATG--AA
* * * *** * *
59532613 GTGCCAATGTAAGACATGTCTGGGACATGCATCGGCCTCGGGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-GCCACATTATGAA
*
59532660 -AGCCAGTGTAAGACATGTGTGGGACATGCATCG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCG
59532693 ACTACGAGAT
Statistics
Matches: 104, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
45 6 0.06
46 47 0.45
47 31 0.30
48 18 0.17
49 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGCCACATTATGAA
Found at i:59534886 original size:27 final size:27
Alignment explanation
Indices: 59534828--59534945 Score: 89
Period size: 27 Copynumber: 4.4 Consensus size: 27
59534818 TCTAAGGAAC
* * *
59534828 CATTCTTTTAGAGTTCACCATACGTA-
1 CATTCTTTTAGAGTTTACCACACATAT
59534854 CTATTCTTTTAGAGTTTACCACACATAT
1 C-ATTCTTTTAGAGTTTACCACACATAT
** * *
59534882 CATTCACTTAGAGTTTACCATATC-TAC
1 CATTCTTTTAGAGTTTACCACA-CATAT
* * * *
59534909 CAGTGTTTCAAAG-TTAGCCACACATAT
1 CATTCTTTTAGAGTTTA-CCACACATAT
59534936 CATTCTTTTA
1 CATTCTTTTA
59534946 TGGTTTTCCA
Statistics
Matches: 69, Mismatches: 18, Indels: 9
0.72 0.19 0.09
Matches are distributed among these distances:
26 5 0.07
27 62 0.90
28 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CATTCTTTTAGAGTTTACCACACATAT
Found at i:59534957 original size:54 final size:53
Alignment explanation
Indices: 59534828--59534996 Score: 139
Period size: 54 Copynumber: 3.2 Consensus size: 53
59534818 TCTAAGGAAC
* * * * * *
59534828 CATTCTTTTAGAGTTCACCATACGTACTATTCTTTTAGAGTTTA-CCACACATAT
1 CATTCTTTTAGAGTTTACCATACTTACCAATC-TTCAAAG-TTAGCCACACATAT
** * *
59534882 CATTCACTTAGAGTTTACCATA-TCTACCAGTGTTTCAAAGTTAGCCACACATAT
1 CATTCTTTTAGAGTTTACCATACT-TACCAAT-CTTCAAAGTTAGCCACACATAT
* * *
59534936 CATTCTTTTATG-GTTTTCCATACTTACCAATCTTCCAAGTTAGCCATACATAT
1 CATTCTTTTA-GAGTTTACCATACTTACCAATCTTCAAAGTTAGCCACACATAT
*
59534989 AATT-TTTT
1 CATTCTTTT
59534997 CAAGGCTTGT
Statistics
Matches: 93, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
52 4 0.04
53 25 0.27
54 62 0.67
55 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (53 bp):
CATTCTTTTAGAGTTTACCATACTTACCAATCTTCAAAGTTAGCCACACATAT
Found at i:59544266 original size:25 final size:25
Alignment explanation
Indices: 59544232--59544283 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
59544222 CATCCATATT
59544232 ACTAGCCATTTAACCTCGAAATCAA
1 ACTAGCCATTTAACCTCGAAATCAA
59544257 ACTAGCCATTTAACCTCGAAATCAA
1 ACTAGCCATTTAACCTCGAAATCAA
59544282 AC
1 AC
59544284 CAACCTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.29, G:0.08, T:0.23
Consensus pattern (25 bp):
ACTAGCCATTTAACCTCGAAATCAA
Found at i:59544551 original size:24 final size:25
Alignment explanation
Indices: 59544498--59544551 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
59544488 AAATTAGAGG
**
59544498 TTAA-TGTTACATCTACTTCTACAT
1 TTAATTGTTACATCTACAACTACAT
*
59544522 CT-ATTGTTACATCTACAACTA-AT
1 TTAATTGTTACATCTACAACTACAT
59544545 TTAATTG
1 TTAATTG
59544552 AATGGGAGAC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44
Consensus pattern (25 bp):
TTAATTGTTACATCTACAACTACAT
Found at i:59547630 original size:474 final size:475
Alignment explanation
Indices: 59546726--59547671 Score: 1425
Period size: 474 Copynumber: 2.0 Consensus size: 475
59546716 AAATATCATG
* * * * *
59546726 AAATTAAGTGAAAAAATATATAAAGTATTATTTATTTACTCGTAATCTACATAAATTGTACATAA
1 AAATTAAGTGAAAAAACATAGAAAGTATTATTTATTTACTCGAAATATACATAAATTGCACATAA
* * *
59546791 AAGAGTGTTGAAATATCTATATATTTTAGAGTTTGCACACCCGTAAACTTAAATCATTGCTCATC
66 AAGAGTGCTAAAATATCTATATATTTTAGAGTTTGCACACCCGTAAACTTAAATCATTACTCATC
* * **
59546856 CCGAGCAATGCTAAAAACATGTTATAATGTAGAATTTTATACATCCGCGCAGTCATGGAAAAACA
131 CCAAGCAATGCTAAAAACATGTTATAATGTAGAACTTTATACATCCAAGCAGTCATGGAAAAACA
* *
59546921 AAAAATTATACTATCAAATTGATTCTACAAATATGTAGTTCATATACAACATATCATTCAATATT
196 AAAAATTATACTATCAAATTGATTCTACAAATATGTAGTTCATATACAACATATCATCCAATATC
* *
59546986 TATTCAAGTGTATAAATGCTAACAAATCATGAATTGAACAGCTAGTTTTAAGAGTAAAGTAAGTT
261 TATTCAAGTGTATAAATGCTAACAAATCATGAATTGAACAACTAATTTTAAGAGTAAAGTAAGTT
* * *
59547051 CAATTCCATAAAAGATTAATTTTCCCTAATTTAACTAAGCATTATTCCTCGAATTTAACACATGT
326 CAATTCCATAAAAGATTAATTTTCCCTAATTTAACTAAGCATCATTCATCGAATTTAACAAATGT
*
59547116 CTTCATATGTTGAATTCAAGACTTCCCTCTCCACTAATGTAGTTAGCTTAGCAGTTTAAATCAAT
391 CTTCATATGTTGAATTCAAGACTTCACTCTCCACTAATGTAGTTAGCTTAGCAGTTTAAATCAAT
59547181 AAGTCTTAAT-AAGGTTTGT
456 AAGTCTTAATAAAGGTTTGT
* * *
59547200 AAATTAAGTGAAAAAACCTAGAAAGTGTTATTTATTTACTCGAAATATGCATAAATTGCACATAA
1 AAATTAAGTGAAAAAACATAGAAAGTATTATTTATTTACTCGAAATATACATAAATTGCACATAA
*
59547265 AAGAGTGCTAAAATATCTATATATTTTAGAGTTTGCACACCTC-TAAACTTAAATCATTACTCGT
66 AAGAGTGCTAAAATATCTATATATTTTAGAGTTTGCACACC-CGTAAACTTAAATCATTACTCAT
* * * * *
59547329 CCTAAGTAATGCTAAAAACATGTTATAATGTAGAACTTTATTCATTCAAGCGGTCATGGAAAAAC
130 CCCAAGCAATGCTAAAAACATGTTATAATGTAGAACTTTATACATCCAAGCAGTCATGGAAAAAC
* * * *
59547394 AAAAAATTATACTCTCAAATT-ATTTTTTTCAAATATGTAGTTCATATACAGCATATCATCCAAT
195 AAAAAATTATACTATCAAATTGA--TTCTACAAATATGTAGTTCATATACAACATATCATCCAAT
* * *
59547458 ATCTATTCAAGTTTCTAAATGCTAACAAATCATGAATTGAACAACTAATTTTAAGAGTAGAGTAA
258 ATCTATTCAAGTGTATAAATGCTAACAAATCATGAATTGAACAACTAATTTTAAGAGTAAAGTAA
**
59547523 GTTCAATTCCATAAAAGATTAA-TTTCTTTAATTTAACTAAGCATCATTCATC-AGATTTAACAA
323 GTTCAATTCCATAAAAGATTAATTTTCCCTAATTTAACTAAGCATCATTCATCGA-ATTTAACAA
* * * **
59547586 ATGTCTTCATATGTTGAATTCAATACTTCACTTTCCATTAATGTAGTTAGCTTAGTGGTTTAAAT
387 ATGTCTTCATATGTTGAATTCAAGACTTCACTCTCCACTAATGTAGTTAGCTTAGCAGTTTAAAT
*
59547651 CAATAGGTCTTAATAAAGGTT
452 CAATAAGTCTTAATAAAGGTT
59547672 ATAACGGGGA
Statistics
Matches: 423, Mismatches: 44, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
473 2 0.00
474 297 0.70
475 124 0.29
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (475 bp):
AAATTAAGTGAAAAAACATAGAAAGTATTATTTATTTACTCGAAATATACATAAATTGCACATAA
AAGAGTGCTAAAATATCTATATATTTTAGAGTTTGCACACCCGTAAACTTAAATCATTACTCATC
CCAAGCAATGCTAAAAACATGTTATAATGTAGAACTTTATACATCCAAGCAGTCATGGAAAAACA
AAAAATTATACTATCAAATTGATTCTACAAATATGTAGTTCATATACAACATATCATCCAATATC
TATTCAAGTGTATAAATGCTAACAAATCATGAATTGAACAACTAATTTTAAGAGTAAAGTAAGTT
CAATTCCATAAAAGATTAATTTTCCCTAATTTAACTAAGCATCATTCATCGAATTTAACAAATGT
CTTCATATGTTGAATTCAAGACTTCACTCTCCACTAATGTAGTTAGCTTAGCAGTTTAAATCAAT
AAGTCTTAATAAAGGTTTGT
Found at i:59549263 original size:105 final size:104
Alignment explanation
Indices: 59549107--59549574 Score: 445
Period size: 105 Copynumber: 4.6 Consensus size: 104
59549097 TTGGTATACA
* *
59549107 AAAATACGAGTTTT----AAAATTTTTTTTGGGTGCTGGCCTGTCAATGGTCGGCACCAAGTAC-
1 AAAATACGAGTTTTAAAAAAAAATTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACA
* *
59549167 AAAAAAAATATAAATATTTAAAATTTTTTTTTTGCTCTCAA
66 AAAAAAAAT-TAAATATTTAAAA-ATTTTTTTTGCTCTCAG
* * *
59549208 AAAATACGAGTTTTAAAAAAAAAGTTTTTTGAGTGATGGCCTGTCAATGGCCGGCACCAAGTACA
1 AAAATACGAGTTTTAAAAAAAAATTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACA
* *
59549273 AAAAAAAATTCAAAATTTTTTTAAAAATTTTTTTTGCTCTCCG
66 AAAAAAAATT--AAA--TATTTAAAAATTTTTTTTGCTCTCAG
*** *
59549316 AAAATACGAGTTTTAAAAAAGTTTTTTTTTTGGGTGCTGGCCTGTCAATAGCCGGCACCAAGTAC
1 AAAATACGAGTTTTAAAAAA-AAATTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTAC
* * **** * *
59549381 AAAAAAGAAATTCAA-ATTAAAAAAAAAATTTTGCTGTCTG
65 AAAAAA-AAATTAAATATTTAAAAATTTTTTTTGCTCTCAG
**
59549421 AAAATACGAGTTTT-AAAAAAAATTTTTTTGGGTGCTGGCCTGTCAATGGCCAACACCAAGTAC-
1 AAAATACGAGTTTTAAAAAAAAATTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACA
*
59549484 AAAAAAAA-TAAA-A---ACAAAA---TTTTTGCTATCCA-
66 AAAAAAAATTAAATATTTA-AAAATTTTTTTTGCTCT-CAG
* * *
59549516 AAAATACGAGTTTTTTAAAAAAAAA---ATTTAGGTCCTGGCCTGTCAATGGCCGGCACCAA
1 AAAATACGAG--TTTTAAAAAAAAATTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAA
59549575 TACGAGTTTT
Statistics
Matches: 311, Mismatches: 40, Indels: 38
0.80 0.10 0.10
Matches are distributed among these distances:
95 47 0.15
96 1 0.00
97 5 0.02
98 12 0.04
100 4 0.01
101 17 0.05
102 5 0.02
103 38 0.12
104 5 0.02
105 73 0.23
106 9 0.03
107 3 0.01
108 36 0.12
109 51 0.16
110 5 0.02
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (104 bp):
AAAATACGAGTTTTAAAAAAAAATTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACA
AAAAAAAATTAAATATTTAAAAATTTTTTTTGCTCTCAG
Found at i:59550134 original size:94 final size:96
Alignment explanation
Indices: 59549954--59550201 Score: 311
Period size: 95 Copynumber: 2.5 Consensus size: 96
59549944 TTTTTTTAAA
* * *
59549954 TTTTGATTTTTTTTGTACTTGGTGTCGGCCATTGACAGGCCAGGACCTAAATTTTTTTTTTTAAA
1 TTTTTATTTTTTTTGTACTTGGTGTCGGCCATTGACAGGCCAGCACC-CAATTTTTTTTTTTAAA
** *
59550019 AACTCGTATTTTTGGATAGCAAAA-A-TTTTG
65 AACTCGTATTTTCAGACAGCAAAATATTTTTG
* *
59550049 TTTTTATTTTTTTTGTACTTGGTGTTGGCCATTGACAGGCCAGCACCCAATTTTTTTTTTTTAAA
1 TTTTTATTTTTTTTGTACTTGGTGTCGGCCATTGACAGGCCAGCACCCAATTTTTTTTTTTAAAA
*
59550114 ACTCGTATTTTCAGACAGCAAAATATTTTTTT
66 ACTCGTATTTTCAGACAGCAAAATA-TTTTTG
* *
59550146 TTAATTTGAATTTCTTTTTTGTACTTGGTGCCGGCTATTGACAGGCCAGCACCCAA
1 TT--TTT--A-TT-TTTTTTGTACTTGGTGTCGGCCATTGACAGGCCAGCACCCAA
59550202 AAAAAAAACT
Statistics
Matches: 132, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
94 36 0.27
95 45 0.34
97 6 0.05
99 3 0.02
101 1 0.01
102 2 0.02
103 39 0.30
ACGTcount: A:0.23, C:0.16, G:0.17, T:0.45
Consensus pattern (96 bp):
TTTTTATTTTTTTTGTACTTGGTGTCGGCCATTGACAGGCCAGCACCCAATTTTTTTTTTTAAAA
ACTCGTATTTTCAGACAGCAAAATATTTTTG
Found at i:59550240 original size:106 final size:103
Alignment explanation
Indices: 59550055--59550438 Score: 391
Period size: 108 Copynumber: 3.7 Consensus size: 103
59550045 TTTGTTTTTA
** ******
59550055 TTTTTTTTGTACTTGGTGTTGGCCATTGACAGGCCAGCACCC-AATTTTTTTTTTTTAAAACTCG
1 TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAAATTTTTTAAAACTCG
* * * *
59550119 TATTTTCAGACAGCAAAATATTTTTTTTTAATTTGAAT
66 TATTTTCGGAGAGCAAAAAATTTTTTTTAAATTTGAAT
*
59550157 TTCTTTTTTGTACTTGGTGCCGGCTATTGACAGGCCAGCACCCAAAAAAAAAACTTTTTTAAAAC
1 TT-TTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCC-AAAAAAAAA-TTTTTTAAAAC
***
59550222 TCGTATTTTCGGAGAGCAAAAAAAATTTTTAAAAAAATTTTGAAT
63 TCGTATTTTCGGAGAGC--AAAAAATTTTT-TTTAAA-TTTGAAT
* * ***
59550267 TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCATCACTCAAAAAACTTTTTTTTTAAAACTC
1 TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAA-AAATTTTTTAAAACTC
* **** *
59550332 GTATTTTTGGAGAGCAAAAAAAAAATTTTAAATATT-TAT
65 GTATTTTCGGAGAGCAAAAAATTTTTTTTAAAT-TTGAAT
* *
59550371 ATTTTTTTGTACTTGGTGCCGACCATTGACAGGCCAGCACCC-AAAAAAAA--TTTTAAAACTCG
1 TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAAATTTTTTAAAACTCG
59550433 TATTTT
66 TATTTT
59550439 TGTATACCAA
Statistics
Matches: 234, Mismatches: 38, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
100 18 0.08
102 2 0.01
103 42 0.18
104 41 0.18
105 7 0.03
106 33 0.14
108 43 0.18
109 39 0.17
110 9 0.04
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (103 bp):
TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAAAATTTTTTAAAACTCG
TATTTTCGGAGAGCAAAAAATTTTTTTTAAATTTGAAT
Found at i:59550344 original size:108 final size:105
Alignment explanation
Indices: 59550055--59550438 Score: 426
Period size: 109 Copynumber: 3.7 Consensus size: 105
59550045 TTTGTTTTTA
** ***
59550055 TTTTTTTTGTACTTGGTGTTGGCCATTGACAGGCCAGCACCC--AATTTTTTTTTTTTAAAACTC
1 TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAATTTTTTTTTAAAACTC
* * * * ***
59550118 GTATTTTCAGACAGC-AAAATATTTTTTTTTAATTTGAAT
66 GTATTTTCGGAGAGCAAAAAAAATTTTTAAAAATTTGAAT
* ***
59550157 TTCTTTTTTGTACTTGGTGCCGGCTATTGACAGGCCAGCACCCAAAAAAAAAACTTTTTTAAAAC
1 TT-TTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCC-AAAAAAATTTTTTTTTAAAAC
59550222 TCGTATTTTCGGAGAGCAAAAAAAATTTTTAAAAAAATTTTGAAT
64 TCGTATTTTCGGAGAGCAAAAAAAATTTTT--AAAAA-TTTGAAT
* * *
59550267 TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCATCACTCAAAAAACTTTTTTTTTAAAACTC
1 TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAATTTTTTTTTAAAACTC
* * *
59550332 GTATTTTTGGAGAGCAAAAAAAAAATTTTAAATATTT--AT
66 GTATTTTCGGAGAGC-AAAAAAAATTTTTAAAAATTTGAAT
* * *
59550371 ATTTTTTTGTACTTGGTGCCGACCATTGACAGGCCAGCACCCAAAAAAA----ATTTTAAAACTC
1 TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAATTTTTTTTTAAAACTC
59550432 GTATTTT
66 GTATTTT
59550439 TGTATACCAA
Statistics
Matches: 241, Mismatches: 32, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
100 18 0.07
102 2 0.01
103 37 0.15
104 46 0.19
106 31 0.13
107 14 0.06
108 33 0.14
109 51 0.21
110 9 0.04
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (105 bp):
TTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAAATTTTTTTTTAAAACTC
GTATTTTCGGAGAGCAAAAAAAATTTTTAAAAATTTGAAT
Found at i:59551425 original size:109 final size:104
Alignment explanation
Indices: 59551221--59551692 Score: 474
Period size: 109 Copynumber: 4.6 Consensus size: 104
59551211 TTTTAAAATT
* * *
59551221 TTTTTTGGGTGCTGGCCTGTCAATGGTCGGCACCAAGTACAAAAAAAATA-T-AAATATTTAAAT
1 TTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATTCAAAT-TTTAAAA
* *
59551284 TTTTTTTTTGCTCTCCAAAAATACGAGTTTTAAAAAAAAA
65 ATTTTTTTTGCTCTCCGAAAATACGAGTTTTAAAAAAAAA
* *
59551324 GTTTTTTGAGTGATGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATTCAAAATTTTTTT
1 -TTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATTC-AAA---TTTT
***
59551389 AAAAATTTTTTTTGCTCTCCGAAAATACGAGTTTTAAAAAAGTTT
61 AAAAATTTTTTTTGCTCTCCGAAAATACGAGTTTTAAAAAA-AAA
* * *
59551434 TTTTTTGGGTGCTGGCCTGTCAATAGCCGGCACCAAGTACAAAAAAGAAATTCAAA-TTAAAAAA
1 TTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATTCAAATTTTAAAAA
**** * *
59551498 AAAATTTTGCTGTCTGAAAATACGAGTTTTAAAAAAAAA
66 TTTTTTTTGCTCTCCGAAAATACGAGTTTTAAAAAAAAA
* * **
59551537 -ATTTTGGGTGCTGGCCTGTCAATTGCCAACACCAAGTAC--AAAAAAAA-T-AAA----AAAAA
1 TTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATTCAAATTTTAAAAA
* * *
59551593 -ATTTTTTGCTATCCAAAAATACGAGTTTTTAAAAAAAAA
66 TTTTTTTTGCTCTCCGAAAATACGAG-TTTTAAAAAAAAA
* * * * *
59551632 --ATTTAGGTCCTGGCCTGTCAATGGCCGACACCAAGTAC-AAAAAAAAA-TCAAAATTTAAAAA
1 TTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATTCAAATTTTAAAAA
59551693 AAAATAATTT
Statistics
Matches: 315, Mismatches: 39, Indels: 32
0.82 0.10 0.08
Matches are distributed among these distances:
94 53 0.17
95 27 0.09
96 3 0.01
98 3 0.01
99 1 0.00
100 12 0.04
102 35 0.11
104 83 0.26
105 1 0.00
107 3 0.01
108 3 0.01
109 90 0.29
110 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (104 bp):
TTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATTCAAATTTTAAAAA
TTTTTTTTGCTCTCCGAAAATACGAGTTTTAAAAAAAAA
Found at i:59552152 original size:86 final size:87
Alignment explanation
Indices: 59552004--59552178 Score: 271
Period size: 86 Copynumber: 2.0 Consensus size: 87
59551994 GGTGAACATT
* * **
59552004 AATTTTTTTTAAAAAAACTCGTATTTTCGGACATTAAATTTTTTTTTAAAAAACTCGTATTGGTG
1 AATTTTTTTTAAAAAAACTCATATTTTCGGACAATAAATTTTTTTAAAAAAAACTCGTATTGGTG
59552069 CCGGCCATTGACAGGCCAGCAC
66 CCGGCCATTGACAGGCCAGCAC
** *
59552091 AATTTTTTTTTTAAAAACTCATATTTTCGGA-AATCAATTTTTTTAAAAAAAACTCGTATTGGTG
1 AATTTTTTTTAAAAAAACTCATATTTTCGGACAATAAATTTTTTTAAAAAAAACTCGTATTGGTG
*
59552155 CCGGCCATTTACAGGCCAGCAC
66 CCGGCCATTGACAGGCCAGCAC
59552177 AA
1 AA
59552179 AAAAAATTGA
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
86 52 0.65
87 28 0.35
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (87 bp):
AATTTTTTTTAAAAAAACTCATATTTTCGGACAATAAATTTTTTTAAAAAAAACTCGTATTGGTG
CCGGCCATTGACAGGCCAGCAC
Found at i:59552196 original size:97 final size:98
Alignment explanation
Indices: 59552091--59552298 Score: 223
Period size: 97 Copynumber: 2.1 Consensus size: 98
59552081 AGGCCAGCAC
* *
59552091 AATTTTTTTTTTAAAAACTCATATTTTCGGAA-ATC-AA-TTTTTTTAAAAAAAACTCGTATTGG
1 AATTTTTTTTTTAAAAACTCATATTTT-AGAACATCAAAGTTTTTTT--AAAAAACTCATATTGG
*
59552153 TGCCGGCCATTTACAGGCCAGCA-CAAAAAAAATTG
63 TGCCGGCCATTGACAGGCCAGCACCAAAAAAAATTG
* **
59552188 AA--TTTTTTTT-AAAACTCGTATTTTAGAACATCAAAAAAGTTTTTTTTTAAAACTCATATTGG
1 AATTTTTTTTTTAAAAACTCATATTTTAGAACATC---AAAGTTTTTTTAAAAAACTCATATTGG
* * * *
59552250 TGCTGGCTATTGACAGGCCAGCACCCAAAAAATTTG
63 TGCCGGCCATTGACAGGCCAGCACCAAAAAAAATTG
59552286 AATTTTTTTTTTA
1 AATTTTTTTTTTA
59552299 GTACTTAGTG
Statistics
Matches: 91, Mismatches: 10, Indels: 16
0.78 0.09 0.14
Matches are distributed among these distances:
93 3 0.03
94 16 0.18
95 8 0.09
97 35 0.38
98 14 0.15
99 7 0.08
100 8 0.09
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (98 bp):
AATTTTTTTTTTAAAAACTCATATTTTAGAACATCAAAGTTTTTTTAAAAAACTCATATTGGTGC
CGGCCATTGACAGGCCAGCACCAAAAAAAATTG
Found at i:59552380 original size:100 final size:101
Alignment explanation
Indices: 59552276--59552761 Score: 525
Period size: 102 Copynumber: 4.8 Consensus size: 101
59552266 GCCAGCACCC
* * **
59552276 AAAAAATTTGAATTTTTTTTTTAGTACTTAGTGCCGGCCATTGATAAG-C-CATTC-AATTTTTT
1 AAAAAATTTGAA-TTTTTTTTT-GTACTTGGTGCCGGCCATTGACAAGCCACACCCAAATTTTTT
* *
59552338 TTTAACAAACTCATATTTTCGGACAGCAA-TTTTTTTTTA
64 TTT-A-AAACTCGTATTTTCGGACAGAAATTTTTTTTTTA
* *
59552377 AAAAATTTTTTG-ATTTTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAGCACCCAAA-TTTT
1 AAAAA--ATTTGAATTTTTTTTTGTACTTGGTGCCGGCCATTGACAAGCCA-CACCCAAATTTTT
*
59552440 TTTTAAAACTCGTATTTTCTGACAGCAAAATTTTTTCTTTTA
63 TTTTAAAACTCGTATTTTCGGACAG--AAATTTTTT-TTTTA
*
59552482 AAAAAATTTGAA--TTTTTTTGTACTTGGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTT
1 AAAAAATTTGAATTTTTTTTTGTACTTGGTGCCGGCCATTGACAAGCC-ACACCCAAATTTTTTT
* *
59552545 TTAAAACTCGTATTTTTGGAGAGAAATTTTTTTTTTAAA
65 TTAAAACTCGTATTTTCGGACAGAAATTTTTTTTTT--A
* * *
59552584 AAAAAATTTG-A-TTTTTTTTGGACTTGGTGTCGGCCATTGACAGAG-AACACCCAAATTTTTTT
1 AAAAAATTTGAATTTTTTTTTGTACTTGGTGCCGGCCATTGACA-AGCCACACCCAAA-TTTTTT
* ****
59552646 TTTAAAACTCGTATTTTCGGAGAGAAA--TTTTAAAAA
64 TTTAAAACTCGTATTTTCGGACAGAAATTTTTTTTTTA
*
59552682 AAAAAATTTGAATTTTTTTTTGTACTTGGTACCGGCCATTGAC-AGACCAGCACCCAAA-TTTTT
1 AAAAAATTTGAATTTTTTTTTGTACTTGGTGCCGGCCATTGACAAG-CCA-CACCCAAATTTTTT
59552745 TTTAAAACTCGTATTTT
64 TTTAAAACTCGTATTTT
59552762 GTATACCAAT
Statistics
Matches: 336, Mismatches: 26, Indels: 48
0.82 0.06 0.12
Matches are distributed among these distances:
98 13 0.04
99 23 0.07
100 58 0.17
101 60 0.18
102 115 0.34
103 49 0.15
104 8 0.02
105 10 0.03
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.42
Consensus pattern (101 bp):
AAAAAATTTGAATTTTTTTTTGTACTTGGTGCCGGCCATTGACAAGCCACACCCAAATTTTTTTT
TAAAACTCGTATTTTCGGACAGAAATTTTTTTTTTA
Found at i:59554590 original size:17 final size:17
Alignment explanation
Indices: 59554568--59554609 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
59554558 ATTGACAACT
59554568 AATTAAAAATAAAATGA
1 AATTAAAAATAAAATGA
* *
59554585 AATTAAAATTAAAATTA
1 AATTAAAAATAAAATGA
59554602 AGATTAAA
1 A-ATTAAA
59554610 TAAATGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (17 bp):
AATTAAAAATAAAATGA
Found at i:59554593 original size:6 final size:6
Alignment explanation
Indices: 59554568--59554609 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
59554558 ATTGACAACT
* * *
59554568 AATTAA AAATAA AA-TGA AATTAA AATTAA AATTAA GATTAA A
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA A
59554610 TAAATGAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (6 bp):
AATTAA
Found at i:59557940 original size:44 final size:42
Alignment explanation
Indices: 59557889--59558039 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 42
59557879 ATATGTGTTA
*
59557889 TCGTGTAAGACCACGTCTAGGACATTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGATT
* * *
59557932 TACGTGTAAGACCACATCTGGGACGTTAGCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
* *
59557975 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATCAATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATC-GTATTTGATT
* * *
59558018 ACATGTAAGATCACGTCTGGGA
1 TCGTGTAAGACCACGTCTGGGA
59558040 TGTCGGCATT
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 33 0.36
44 31 0.34
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
Found at i:59557994 original size:42 final size:43
Alignment explanation
Indices: 59557889--59558039 Score: 139
Period size: 44 Copynumber: 3.5 Consensus size: 43
59557879 ATATGTGTTA
* *
59557889 TCGTGTAAGACCACGTCTAGGACATTGGCATCGACTTATGATT
1 TCGTGTAAGACCACGTCTGGGACATTAGCATCGACTTATGATT
* *
59557932 TACGTGTAAGACCACATCTGGGACGTTAGCATCGTA-TT-TGATT
1 T-CGTGTAAGACCACGTCTGGGACATTAGCATCG-ACTTATGATT
* * * *
59557975 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATC-AATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTAGCATCGACT-TATGATT
* * *
59558018 ACATGTAAGATCACGTCTGGGA
1 TCGTGTAAGACCACGTCTGGGA
59558040 TGTCGGCATT
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 26 0.29
43 29 0.32
44 31 0.34
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACATTAGCATCGACTTATGATT
Found at i:59559258 original size:67 final size:65
Alignment explanation
Indices: 59559095--59559259 Score: 165
Period size: 66 Copynumber: 2.5 Consensus size: 65
59559085 GTAGCCAAGT
* * *
59559095 TAGTTTTGACCACAGGCTAGACACATGGGCGTGTGACTGGCCATGTGACCCAAGTCAGTAGCCTC
1 TAGTTTTGA-CACAGCCTAGACACATGGGCGTGTCACTGGCCATGTGA-CCAAGTCAGTAGCATC
59559160 CC
64 CC
* * * * * * *
59559162 TAATTTTCACACGGCCT-GGCACATGGGCGTGTCATGTGGCCGTGTGGA-CAAGTCAGTATGTAT
1 TAGTTTTGACACAGCCTAGACACATGGGCGTGTCA-CTGGCCATGT-GACCAAGTCAGTA-GCAT
59559225 GCCC
63 -CCC
59559229 T-GTTTTGACACAGCCTAGACACATGGGCGTG
1 TAGTTTTGACACAGCCTAGACACATGGGCGTG
59559260 CCTAAAGCCG
Statistics
Matches: 79, Mismatches: 14, Indels: 10
0.77 0.14 0.10
Matches are distributed among these distances:
65 25 0.32
66 28 0.35
67 26 0.33
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (65 bp):
TAGTTTTGACACAGCCTAGACACATGGGCGTGTCACTGGCCATGTGACCAAGTCAGTAGCATCCC
Found at i:59565632 original size:12 final size:12
Alignment explanation
Indices: 59565615--59565639 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59565605 GATCCATGAT
59565615 TAAATTAATCAG
1 TAAATTAATCAG
59565627 TAAATTAATCAG
1 TAAATTAATCAG
59565639 T
1 T
59565640 CAACAAGGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (12 bp):
TAAATTAATCAG
Found at i:59570260 original size:21 final size:21
Alignment explanation
Indices: 59570234--59570276 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
59570224 CTTTCTGTTT
59570234 ATGAACTTACTAAGCTCCTTG
1 ATGAACTTACTAAGCTCCTTG
59570255 ATGAACTTACTAAGCTCCTTG
1 ATGAACTTACTAAGCTCCTTG
59570276 A
1 A
59570277 AGCTTACTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (21 bp):
ATGAACTTACTAAGCTCCTTG
Found at i:59576263 original size:19 final size:19
Alignment explanation
Indices: 59576235--59576274 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
59576225 AATAATTTTT
*
59576235 ATCAAGTAAAGTT-AAATTA
1 ATCAAATAAA-TTAAAATTA
59576254 ATCAAATAAATTAAAATTA
1 ATCAAATAAATTAAAATTA
59576273 AT
1 AT
59576275 ATGATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (19 bp):
ATCAAATAAATTAAAATTA
Found at i:59581923 original size:42 final size:43
Alignment explanation
Indices: 59581815--59581972 Score: 139
Period size: 43 Copynumber: 3.7 Consensus size: 43
59581805 AACTCTTACA
* * *
59581815 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* * *
59581858 ATGCCACTGTCCCAAACAGGGTCTTACACGAAATCTAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
59581900 ATGTCGA-TGTCCTAGACATGGTCTTACACGTAAATCATAAGT-T-G
1 ATG-CCACTGTCCCAGACATGGTCTTACACG-AAATCA-AA-TATCG
*
59581944 ATGCCAAC-GTCCCAGACGTGGTCTTACAC
1 ATGCC-ACTGTCCCAGACATGGTCTTACAC
59581973 AAAAACACAT
Statistics
Matches: 93, Mismatches: 14, Indels: 15
0.76 0.11 0.12
Matches are distributed among these distances:
42 27 0.29
43 39 0.42
44 26 0.28
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:59592257 original size:42 final size:42
Alignment explanation
Indices: 59592210--59592365 Score: 147
Period size: 42 Copynumber: 3.7 Consensus size: 42
59592200 AGCTCGTACA
59592210 ATGCCAATATCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACATGTAATCAATATCG
* *
59592252 ATGCCACTATCCCAGACAG-GGTCTTACATGAAATCAAATAT-G
1 ATGCCAATATCCCAGAC-GTGGTCTTACATGTAATC-AATATCG
* * * * * **
59592294 GTGTCGATATCCCAAACATGGTCTTACACATAAATC-ATAAGTCG
1 ATGCCAATATCCCAGACGTGGTCTTACATGT-AATCAAT-A-TCG
**
59592338 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAATATCCCAGACGTGGTCTTACA
59592366 CGAAAACACA
Statistics
Matches: 89, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
41 2 0.02
42 54 0.61
43 11 0.12
44 22 0.25
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCAATATCCCAGACGTGGTCTTACATGTAATCAATATCG
Found at i:59593776 original size:17 final size:17
Alignment explanation
Indices: 59593754--59593790 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
59593744 CAAGTCCTTG
59593754 CATTTTTA-TCACTTTAA
1 CATTTTTAGTC-CTTTAA
59593771 CA-TTTTAGTCCTTTAA
1 CATTTTTAGTCCTTTAA
59593787 CATT
1 CATT
59593791 AAAATTAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.27, C:0.19, G:0.03, T:0.51
Consensus pattern (17 bp):
CATTTTTAGTCCTTTAA
Found at i:59607355 original size:47 final size:48
Alignment explanation
Indices: 59607273--59607401 Score: 152
Period size: 48 Copynumber: 2.7 Consensus size: 48
59607263 AATCGATAAG
* ** * * * *
59607273 TACCTATATCATGGCCCGTAGCCAAATCATCGTAACTTATC-CCAGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCACCTCCAAAA
* *
59607320 TGCCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCCCTCCAAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCACCTCCAAAA
**
59607368 TACCTATACCATGGCCTATAGCCAAATCAAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
59607402 TAATTTGCAC
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 34 0.49
48 35 0.51
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.22
Consensus pattern (48 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCACCTCCAAAA
Found at i:59612158 original size:85 final size:85
Alignment explanation
Indices: 59611966--59612159 Score: 307
Period size: 85 Copynumber: 2.3 Consensus size: 85
59611956 CACGACCATG
* * * * *
59611966 ACACGCCCGTGTCCTAGCCCATGTGCAAAGACATGGACATTTTTTTTCTGACGTCAGCATCCTCA
1 ACACGCCCGTGTCCTAGCCCGTGTGCAAAGACATAGACATTCTGTTTCTGACGTCAACATCCTCA
59612031 ATATGTCACACGGCCAAGGC
66 ATATGTCACACGGCCAAGGC
* *
59612051 ACACGCCCATGTCCTAGCCCGTGTGCAAAGACATAGACATTCTGTTTCTGACGTTAACATCCTCA
1 ACACGCCCGTGTCCTAGCCCGTGTGCAAAGACATAGACATTCTGTTTCTGACGTCAACATCCTCA
59612116 ATATGTCACACGGCCAAGGC
66 ATATGTCACACGGCCAAGGC
* *
59612136 ACACGCCTGTGTCCTAGGCCGTGT
1 ACACGCCCGTGTCCTAGCCCGTGT
59612160 CCCTCACACA
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 99 1.00
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (85 bp):
ACACGCCCGTGTCCTAGCCCGTGTGCAAAGACATAGACATTCTGTTTCTGACGTCAACATCCTCA
ATATGTCACACGGCCAAGGC
Found at i:59612200 original size:42 final size:42
Alignment explanation
Indices: 59612121--59612201 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
59612111 CCTCAATATG
* * * *
59612121 TCACACGGCCAAGGCACACGCCTGTGTCCTAGGCCGTGTCCC
1 TCACACAGCCAAGACACACGACTGTGTCCTAGCCCGTGTCCC
*
59612163 TCACACAGCTAAGACACACGACTGTGTCTCTA-CCCGTGT
1 TCACACAGCCAAGACACACGACTGTGTC-CTAGCCCGTGT
59612202 GTTTACTATC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 30 0.91
43 3 0.09
ACGTcount: A:0.21, C:0.37, G:0.22, T:0.20
Consensus pattern (42 bp):
TCACACAGCCAAGACACACGACTGTGTCCTAGCCCGTGTCCC
Found at i:59613116 original size:46 final size:46
Alignment explanation
Indices: 59613034--59613150 Score: 148
Period size: 46 Copynumber: 2.5 Consensus size: 46
59613024 GTGTCGATGC
*
59613034 CATGTCCCAAACATGGTCTTACATTGACTATCATCTCACAG-CCGACG
1 CATGTCCCAAACAT-GTCTTACACTGACTATCATCTC-CAGACCGACG
* * * *
59613081 CATGTCCCAGACATGTCTTACACTGGCT-TGCATCTCGAGACCGATG
1 CATGTCCCAAACATGTCTTACACTGACTAT-CATCTCCAGACCGACG
59613127 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAAACATGTCTTACACT
59613151 AGCACTAGTC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 3 0.05
46 46 0.74
47 13 0.21
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTGACTATCATCTCCAGACCGACG
Found at i:59613265 original size:46 final size:44
Alignment explanation
Indices: 59613074--59613258 Score: 113
Period size: 46 Copynumber: 4.0 Consensus size: 44
59613064 TCATCTCACA
* * * * *
59613074 GCCGACGCATGTCCCAGACATGTCTTACACTGGCTTGCATCTCGAG-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACA-CACAAGT
* * *
59613120 ACCGATGCATGTCCCAAACATGTCTTACACTAGCACTAGTCTCAA-T
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCAC-A--CACAAGT
* * * * * *** *
59613166 GTCGATGCCATGTTCTAGACATGGTATTACACTGGCTTTCATAATGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACACACAA-GT
59613213 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACACACAAGT
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCACACACAAGT
59613258 G
1 G
59613259 ACCCGATCGT
Statistics
Matches: 104, Mismatches: 27, Indels: 18
0.70 0.18 0.12
Matches are distributed among these distances:
44 2 0.02
45 6 0.06
46 55 0.53
47 24 0.23
48 17 0.16
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACACACAAGT
Found at i:59615484 original size:26 final size:26
Alignment explanation
Indices: 59615448--59615557 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
59615438 TGATAGAAAT
59615448 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
59615474 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
59615500 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
59615526 TGATAATGGGTTAGGTAAAAGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
59615552 TGATAA
1 TGATAA
59615558 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Done.