Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 186 of 253
Found at i:60791419 original size:56 final size:56
Alignment explanation
Indices: 60791333--60791446 Score: 201
Period size: 56 Copynumber: 2.0 Consensus size: 56
60791323 AGAACACTAT
* *
60791333 TGCCTTGGATAACATTAGATTTATGTAATTAAATTTTTTTAAACCTAACCAGTCCC
1 TGCCTTGGATAACATTAGATTTATGTAATTAAATTGTTTCAAACCTAACCAGTCCC
*
60791389 TGCCTTGGATAACATTAGATTTATGTAATTAAATTGTTTCAAACCTAACCCGTCCC
1 TGCCTTGGATAACATTAGATTTATGTAATTAAATTGTTTCAAACCTAACCAGTCCC
60791445 TG
1 TG
60791447 TTACTTTGCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (56 bp):
TGCCTTGGATAACATTAGATTTATGTAATTAAATTGTTTCAAACCTAACCAGTCCC
Found at i:60793556 original size:45 final size:41
Alignment explanation
Indices: 60793479--60793575 Score: 106
Period size: 45 Copynumber: 2.3 Consensus size: 41
60793469 ATATGTGTTC
* * *
60793479 TCGTGTAACACCACGTCTGGGACGTTAGCATCGATATATGTGGT
1 TCGTGTAAGACCACGTCTGGGACATTAGCATCG-TAT-T-TGAT
*
60793523 TACGTGTAAGACCATGTCTGGGACATT-GACATCGTATTTGAT
1 T-CGTGTAAGACCACGTCTGGGACATTAG-CATCGTATTTGAT
60793565 TCGTGTAAGAC
1 TCGTGTAAGAC
60793576 TGAAACACCC
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
41 10 0.21
42 4 0.09
43 1 0.02
44 5 0.11
45 27 0.57
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (41 bp):
TCGTGTAAGACCACGTCTGGGACATTAGCATCGTATTTGAT
Found at i:60799707 original size:17 final size:17
Alignment explanation
Indices: 60799673--60799713 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
60799663 TCATTTTTTC
*
60799673 ACATATATATATCAAAA
1 ACATATAAATATCAAAA
60799690 ACATATAAATAT-ATAAA
1 ACATATAAATATCA-AAA
60799707 A-ATATAA
1 ACATATAA
60799714 TAAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.29
Consensus pattern (17 bp):
ACATATAAATATCAAAA
Found at i:60799716 original size:19 final size:18
Alignment explanation
Indices: 60799679--60799726 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
60799669 TTTCACATAT
60799679 ATATATCAAAAACATATAA
1 ATATAT-AAAAACATATAA
*
60799698 ATATATAAAAATATAATAA
1 ATATATAAAAACAT-ATAA
*
60799717 A-AAATAAAAA
1 ATATATAAAAA
60799727 AAATTACCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (18 bp):
ATATATAAAAACATATAA
Found at i:60800801 original size:16 final size:17
Alignment explanation
Indices: 60800782--60800814 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
60800772 ATATTTTTTA
60800782 CATATAGTATTA-ATTT
1 CATATAGTATTATATTT
*
60800798 CATATATTATTATATTT
1 CATATAGTATTATATTT
60800815 ATTATTATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (17 bp):
CATATAGTATTATATTT
Found at i:60801108 original size:26 final size:27
Alignment explanation
Indices: 60801054--60801113 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
60801044 CTACGTATTG
* *
60801054 TGTATATTCTTAATACTATATATTGTA
1 TGTATATTCTTAATAATATATATTATA
*
60801081 TGTATTTTCTTAATAAT-TATATTATA
1 TGTATATTCTTAATAATATATATTATA
60801107 TGTATAT
1 TGTATAT
60801114 ATATACTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 14 0.48
27 15 0.52
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (27 bp):
TGTATATTCTTAATAATATATATTATA
Found at i:60812236 original size:41 final size:41
Alignment explanation
Indices: 60812183--60812413 Score: 268
Period size: 41 Copynumber: 5.7 Consensus size: 41
60812173 CGTTGACTCA
* * * *
60812183 AAAAACCCTTCGAGACCAAGCTCGGATTATGAAATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
60812224 GAATGCCCTTCGAAACTAGGTTC-GATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* *
60812264 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
60812305 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* *
60812345 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTAGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
60812386 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
60812414 TAAACCCCGA
Statistics
Matches: 153, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
40 62 0.41
41 91 0.59
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:60812254 original size:40 final size:40
Alignment explanation
Indices: 60812207--60812398 Score: 168
Period size: 40 Copynumber: 4.8 Consensus size: 40
60812197 ACCAAGCTCG
* *
60812207 GATTATGAAATTGGCCCGAATGCCCTTCGAAACTAGGTTC
1 GATTATGACATTGGCCCGAAAGCCCTTCGAAACTAGGTTC
* * * * * * *
60812247 GATTATGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTC
1 GATTATGACATTGGCCCGAAAGCCCTTCGAAACTAGGTTC
*
60812287 GGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTC
1 -GATTATGACATTGGCCCGAAAGCCCTTCGAAACTAGGTTC
* * * * * * * *
60812328 GGTTATGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTC
1 GATTATGACATTGGCCCGAAAGCCCTTCGAAACTAGGTTC
* * * *
60812368 AGATTATGACACTAGCTCAAAAGCCCTTCGA
1 -GATTATGACATTGGCCCGAAAGCCCTTCGA
60812399 GACCAAGCTC
Statistics
Matches: 122, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
40 62 0.51
41 60 0.49
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
GATTATGACATTGGCCCGAAAGCCCTTCGAAACTAGGTTC
Found at i:60812377 original size:81 final size:81
Alignment explanation
Indices: 60812183--60812378 Score: 347
Period size: 81 Copynumber: 2.4 Consensus size: 81
60812173 CGTTGACTCA
* * *
60812183 AAAAACCCTTCGAGACCAAGCTCGGATTATGAAATTGGCCCGAATGCCCTTCGAAACTAGGTTCG
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTCG
60812248 ATTATGACACTGGCTC
66 ATTATGACACTGGCTC
60812264 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTCG
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTCG
*
60812329 GTTATGACACTGGCTC
66 ATTATGACACTGGCTC
*
60812345 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACA
60812379 CTAGCTCAAA
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 110 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (81 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTCG
ATTATGACACTGGCTC
Found at i:60816697 original size:26 final size:26
Alignment explanation
Indices: 60816668--60816723 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
60816658 TGATACAAAT
*
60816668 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
60816694 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
60816720 TGAT
1 TGAT
60816724 GGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:60819568 original size:14 final size:14
Alignment explanation
Indices: 60819549--60819581 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
60819539 CGCTAAGGAA
60819549 TTCAATTCCTGCTT
1 TTCAATTCCTGCTT
*
60819563 TTCAATTTCTGCTT
1 TTCAATTCCTGCTT
60819577 TTCAA
1 TTCAA
60819582 AAAAATCGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.24, G:0.06, T:0.52
Consensus pattern (14 bp):
TTCAATTCCTGCTT
Found at i:60819679 original size:95 final size:93
Alignment explanation
Indices: 60819561--60819748 Score: 259
Period size: 93 Copynumber: 2.0 Consensus size: 93
60819551 CAATTCCTGC
* * *
60819561 TTTTCAATTTCTGCTTTTCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCA
1 TTTTCAATTTCTACTTTTC--AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCTCA
* * *
60819626 CATGCTGAGGTATTTTCAGTTTCTGTTTTT
64 CATGCTGAGCTATTTTCAATTTCTATTTTT
* * * * *
60819656 TTTTCAATTTTTATTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCTTTGGCTCACG
1 TTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCTCACA
60819721 TGCTGAGCTATTTTCAATTTCTATTTTT
66 TGCTGAGCTATTTTCAATTTCTATTTTT
60819749 ACTGTCTGTT
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
93 66 0.80
95 16 0.20
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (93 bp):
TTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCTCACA
TGCTGAGCTATTTTCAATTTCTATTTTT
Found at i:60819695 original size:93 final size:87
Alignment explanation
Indices: 60819582--60819986 Score: 274
Period size: 88 Copynumber: 4.6 Consensus size: 87
60819572 TGCTTTTCAA
* *
60819582 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAGTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
* * *
60819647 TCTGTTTTTTTTTCAATTTTTATTTTT
66 TC----TATTTTT-AATGTCTATTTTT
* * * * *
60819674 CAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCTTTGGCTCACGTGCTGAGCTATTTTCAAT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAAT
* *
60819739 TTCTATTTTTACTGTCTGTTTTT
65 TTCTATTTTTAATGTCTATTTTT
*
60819762 AAAGGA-CTAACTCATATTGCGAGAGGTGAGTTGAGCCTCTGG-TCACATGAC-GAGGTATTTTC
1 AAA-AATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATG-CTGAGGTATTTTC
* * * * *
60819824 GAA-ATCTACTTTTCAAAT-T-AAGTTTC
62 -AATTTCTA-TTTT-TAATGTCTATTTTT
* * * * * *
60819850 AAAAGGACCAA-TCCATATTGCGAGAGTTGAGTTGAGCCTTGGCTCACGTGCTAAGCTATTTTCA
1 AAAA--ATCAACT-CATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCA
*
60819914 ATTTCT-GTTTTAATGT-T-TGTTTT
63 ATTTCTATTTTTAATGTCTAT-TTTT
* * * * ** *
60819937 AAAGAGTCAATTCAGATTGCAAGAAATGAGTTGAG-CTCAGGATCACATGC
1 AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGC
60819987 CGAGTAAAGA
Statistics
Matches: 247, Mismatches: 46, Indels: 45
0.73 0.14 0.13
Matches are distributed among these distances:
85 2 0.01
86 34 0.14
87 15 0.06
88 71 0.29
89 62 0.25
90 3 0.01
93 60 0.24
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
TCTATTTTTAATGTCTATTTTT
Found at i:60819821 original size:88 final size:91
Alignment explanation
Indices: 60819493--60819919 Score: 300
Period size: 88 Copynumber: 4.8 Consensus size: 91
60819483 ATTCTGTTTG
* * * * * *
60819493 TCAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCTCAGG-GCAC--GCTAAGG-A-ATTCA
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTGGCTCACATGCTGAGGTATTTTCA
* ** * **
60819553 A-TTCCTGCTTTTCAATTTCTGCTTT
66 ATTTCTTATTTTTCAATGTCTATTTT
*
60819578 TCAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTT
1 TC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTGGCTCACATGCTGAGGTATTTT
* * * *
60819642 CAGTTTCTGTTTTTTTTTCAATTTTTATTTT
64 CAATTTC---TTATTTTTCAATGTCTATTTT
* * * *
60819673 TCAAAAATCAACTCATATTGCGAGAGATGAGTTGAG-CTTTGGCTCACGTGCTGAGCTATTTTCA
1 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTGGCTCACATGCTGAGGTATTTTCA
* *
60819737 ATTTC-TATTTTT-ACTGTCTGTTTT
66 ATTTCTTATTTTTCAATGTCTATTTT
*
60819761 T-AAAGGA-CTAACTCATATTGCGAGAGGTGAGTTGAGCCTCTGG-TCACATGAC-GAGGTATTT
1 TCAAA-AATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCTGGCTCACATG-CTGAGGTATTT
* * * **
60819822 TCGAA-ATC-TACTTTTCAA-AT-TAAGTT
63 TC-AATTTCTTATTTTTCAATGTCTATTTT
* * * * *
60819848 TCAAAAGGACCAA-TCCATATTGCGAGAGTTGAGTTGAGCCT-TGGCTCACGTGCTAAGCTATTT
1 TCAAAA--ATCAACT-CATATTGCGAGAGGTGAGTTGAGCCTCTGGCTCACATGCTGAGGTATTT
60819911 TCAATTTCT
63 TCAATTTCT
60819920 GTTTTAATGT
Statistics
Matches: 273, Mismatches: 42, Indels: 49
0.75 0.12 0.13
Matches are distributed among these distances:
85 2 0.01
86 2 0.01
87 46 0.17
88 71 0.26
89 66 0.24
90 2 0.01
91 4 0.01
92 5 0.02
93 58 0.21
95 17 0.06
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (91 bp):
TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCTGGCTCACATGCTGAGGTATTTTCA
ATTTCTTATTTTTCAATGTCTATTTT
Found at i:60821798 original size:27 final size:27
Alignment explanation
Indices: 60821742--60821807 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
60821732 GTATTATCTT
*
60821742 TTATATATTATTACATTTATTATTTCTA
1 TTAT-TATTATTACATTTATTATTTATA
60821770 TTATTATTATTACCA-TT-TTATATTATA
1 TTATTATTATTA-CATTTATTAT-TTATA
*
60821797 TTAGTATTATT
1 TTATTATTATT
60821808 TTAAATATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 4 0.12
27 24 0.71
28 6 0.18
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.61
Consensus pattern (27 bp):
TTATTATTATTACATTTATTATTTATA
Found at i:60822109 original size:16 final size:17
Alignment explanation
Indices: 60822090--60822122 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
60822080 ATATTTTTTA
60822090 CATATAGTATTA-ATTT
1 CATATAGTATTATATTT
*
60822106 CATATATTATTATATTT
1 CATATAGTATTATATTT
60822123 ATTATTATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (17 bp):
CATATAGTATTATATTT
Found at i:60822415 original size:26 final size:27
Alignment explanation
Indices: 60822361--60822420 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
60822351 CTACGTATTG
* *
60822361 TGTATATTCTTAATACTATATATTGTA
1 TGTATATTCTTAATAATATATATTATA
*
60822388 TGTATTTTCTTAATAAT-TATATTATA
1 TGTATATTCTTAATAATATATATTATA
60822414 TGTATAT
1 TGTATAT
60822421 ATATACTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 14 0.48
27 15 0.52
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (27 bp):
TGTATATTCTTAATAATATATATTATA
Found at i:60830581 original size:53 final size:53
Alignment explanation
Indices: 60830501--60830603 Score: 197
Period size: 53 Copynumber: 1.9 Consensus size: 53
60830491 TGATTATGTA
*
60830501 ATGCTACATTCACTTCAGGGAATGAAGCATATCTAATGATAAACTTTTTTTTC
1 ATGCTACATTCACTTCAGGGAATGAAGCATATCTAATGATAAACCTTTTTTTC
60830554 ATGCTACATTCACTTCAGGGAATGAAGCATATCTAATGATAAACCTTTTT
1 ATGCTACATTCACTTCAGGGAATGAAGCATATCTAATGATAAACCTTTTT
60830604 ATTTATTTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (53 bp):
ATGCTACATTCACTTCAGGGAATGAAGCATATCTAATGATAAACCTTTTTTTC
Found at i:60831772 original size:4 final size:4
Alignment explanation
Indices: 60831756--60831787 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
60831746 AAGGTAAAAA
60831756 TAAT TAAT ATAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT -TAAT TAAT TAAT TAAT TAAT TAA
60831788 ATTTTTATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (4 bp):
TAAT
Found at i:60833639 original size:129 final size:134
Alignment explanation
Indices: 60833471--60833716 Score: 297
Period size: 130 Copynumber: 1.9 Consensus size: 134
60833461 GAAACTAAGC
* * * * *
60833471 TTGCCTTTTAGTTTTTATTTTTGAAATCTCACGTGTTTTG-ATTTAAAAGGATATTCGGTTAT-T
1 TTGCCTTTTAGTTTTTA-TTTTAAAATCTCACGTATTTTGAAATTAAAAGGATATTAGGCTATCT
* * * *
60833534 TAGATCCATCGAGAAAAATCAAAATCTCGTAAGTTAGGGTACGATTTTCTCGAGTTTCTAAACAC
65 CAGATCCA-CGAGAAAAATCAAAACCCCGTAAGTTAAGGTACGATTTTCTCGAGTTTCTAAACAC
60833599 AAGATA
129 AAGATA
*
60833605 TTGCC-TTTA-TTTTTA-TTTAAAAT-TCACGTATTTTGAAATTAAATGGATATTAGGCTATCTC
1 TTGCCTTTTAGTTTTTATTTTAAAATCTCACGTATTTTGAAATTAAAAGGATATTAGGCTATCTC
* * ** *
60833666 GGTTTGACGAGAAAAATCGAAACCCCGTAAGTTAAGGTACGATTTTCTCGA
66 AGATCCACGAGAAAAATCAAAACCCCGTAAGTTAAGGTACGATTTTCTCGA
60833717 ATCTCTAAGA
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
129 11 0.12
130 65 0.68
131 4 0.04
132 6 0.06
133 4 0.04
134 5 0.05
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.39
Consensus pattern (134 bp):
TTGCCTTTTAGTTTTTATTTTAAAATCTCACGTATTTTGAAATTAAAAGGATATTAGGCTATCTC
AGATCCACGAGAAAAATCAAAACCCCGTAAGTTAAGGTACGATTTTCTCGAGTTTCTAAACACAA
GATA
Found at i:60833950 original size:19 final size:19
Alignment explanation
Indices: 60833928--60833965 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
60833918 TAATCAAAGA
* *
60833928 AAAATGAAATAAATGATAG
1 AAAATAAAATAAATAATAG
60833947 AAAATAAAATAAATAATAG
1 AAAATAAAATAAATAATAG
60833966 GACAATTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AAAATAAAATAAATAATAG
Found at i:60834133 original size:26 final size:27
Alignment explanation
Indices: 60834061--60834133 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
60834051 TTAAAACGAT
* *
60834061 TAATATACAAAAAAATCTAAAATAAAA
1 TAATATAAAAAAAAATTTAAAATAAAA
* * *
60834088 TAATATATAAAACAACTTAAAAT-AAA
1 TAATATAAAAAAAAATTTAAAATAAAA
60834114 TAATA-AGAAAAAAAATTTAA
1 TAATATA-AAAAAAAATTTAA
60834134 GATGACATAT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.03
26 18 0.47
27 19 0.50
ACGTcount: A:0.68, C:0.05, G:0.01, T:0.25
Consensus pattern (27 bp):
TAATATAAAAAAAAATTTAAAATAAAA
Found at i:60834248 original size:34 final size:36
Alignment explanation
Indices: 60834182--60834308 Score: 84
Period size: 36 Copynumber: 3.6 Consensus size: 36
60834172 AAAAAAGAAA
* *
60834182 TTTAAAATAAATAATATATATAAAAGTATAAAACAG
1 TTTAAAATAAATAATATATAGAAAACTATAAAACAG
* * *
60834218 TTTAATATAAATAATATAT-GAAATCT-TAAAATA-
1 TTTAAAATAAATAATATATAGAAAACTATAAAACAG
** * * * *
60834251 AATAATAAAAAACAGTATATACTAAATACATATAAAAC--
1 TTTAA-AATAAATAATATATA-GAAA-AC-TATAAAACAG
60834289 TTTAAAATAAATAATATATA
1 TTTAAAATAAATAATATATA
60834309 AAACAATTTA
Statistics
Matches: 66, Mismatches: 19, Indels: 11
0.69 0.20 0.11
Matches are distributed among these distances:
33 3 0.05
34 16 0.24
35 4 0.06
36 21 0.32
37 13 0.20
38 4 0.06
39 5 0.08
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (36 bp):
TTTAAAATAAATAATATATAGAAAACTATAAAACAG
Found at i:60834304 original size:26 final size:25
Alignment explanation
Indices: 60834208--60834337 Score: 119
Period size: 24 Copynumber: 5.3 Consensus size: 25
60834198 TATATAAAAG
*
60834208 TATAAAACAGTTTAATATAAATAATA
1 TATAAAACA-TTTAAAATAAATAATA
*
60834234 TAT-GAA-ATCTTAAAATAAATAATA
1 TATAAAACAT-TTAAAATAAATAATA
* * * *
60834258 -A-AAAACAGTATATACTAAAT-ACA
1 TATAAAACA-TTTAAAATAAATAATA
60834281 TATAAAAC-TTTAAAATAAATAATA
1 TATAAAACATTTAAAATAAATAATA
*
60834305 TATAAAACAATTTAAAATAAATAATG
1 TATAAAAC-ATTTAAAATAAATAATA
60834331 TATAAAA
1 TATAAAA
60834338 TAATTTGAAG
Statistics
Matches: 83, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
23 15 0.18
24 35 0.42
25 8 0.10
26 25 0.30
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (25 bp):
TATAAAACATTTAAAATAAATAATA
Found at i:60835711 original size:20 final size:20
Alignment explanation
Indices: 60835686--60835723 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
60835676 TTAATCTTAT
60835686 TTATTATTTTTGGTTTATTA
1 TTATTATTTTTGGTTTATTA
60835706 TTATTATTTTTGGTTTAT
1 TTATTATTTTTGGTTTAT
60835724 AACGGGCCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.11, T:0.71
Consensus pattern (20 bp):
TTATTATTTTTGGTTTATTA
Found at i:60836178 original size:179 final size:179
Alignment explanation
Indices: 60835878--60836210 Score: 488
Period size: 179 Copynumber: 1.9 Consensus size: 179
60835868 AGTCCCACTG
* * * * *
60835878 CAACTTCAGAAAGATGAGACTTGTAGCTTCGATTTGCTCTAGTATAGTTTCAAGGAGAAGAGATT
1 CAACTTCAGAAAGATAAGACTTGTAGCTTCGATCTGCTCCAATATAATTTCAAGGAGAAGAGATT
* * * * *
60835943 TGTAGCTTCGATCTACTCCGCTGGAACTTAAAGGAGATAGGAATTGGTAATTTCAACCTGCTCCA
66 TGTAGCTTCAATCTACTCCACTGGAACTTAAAGGAGATAAGAATTAGTAATTTCAACATGCTCCA
*
60836008 CTACAACTTCAGGGAGATATGGTTTGTGTAGTTTTATCCTACTCTACTA
131 CTACAACTTCAGGGAGATAAGGTTTGTGTAGTTTTATCCTACTCTACTA
* * * *
60836057 CAACTTCAGAGAGATAAGGA-TTGTGGCTTCGATCTGCTCCAATATAATTTTACGGAGAAGAGAT
1 CAACTTCAGAAAGATAA-GACTTGTAGCTTCGATCTGCTCCAATATAATTTCAAGGAGAAGAGAT
*
60836121 TTGTATCTTCAATCTACTCCACTGGAACTTAAAGGAGATAAGAATTAGTAATTTCAACATGCTCC
65 TTGTAGCTTCAATCTACTCCACTGGAACTTAAAGGAGATAAGAATTAGTAATTTCAACATGCTCC
**
60836186 ACTTTAACTTCAGGGAGATAAGGTT
130 ACTACAACTTCAGGGAGATAAGGTT
60836211 GGTGGCTTCA
Statistics
Matches: 135, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
179 133 0.99
180 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (179 bp):
CAACTTCAGAAAGATAAGACTTGTAGCTTCGATCTGCTCCAATATAATTTCAAGGAGAAGAGATT
TGTAGCTTCAATCTACTCCACTGGAACTTAAAGGAGATAAGAATTAGTAATTTCAACATGCTCCA
CTACAACTTCAGGGAGATAAGGTTTGTGTAGTTTTATCCTACTCTACTA
Found at i:60836379 original size:143 final size:143
Alignment explanation
Indices: 60836191--60836636 Score: 678
Period size: 143 Copynumber: 3.1 Consensus size: 143
60836181 GCTCCACTTT
*
60836191 AACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTG-TTTCACTGCAACTTCAGGAAGATAAGATC
1 AACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGCTCT-ACTGCAACTTCAGGAAGATAAGATC
* * * * *
60836255 CACCATAATTTGTAGCTTCAATCTTTTCCACTCCAACTTCAAGGAAATGAGATTTGCTATCTCCA
65 CACCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCA
* *
60836320 GTCAACTCCGTTGC
130 GTCTACTCCGCTGC
* * *
60836334 AACTTCAGGGAGATAAGGTTAGTGGCTTCATTCTGCTCTAATGCAACTTCAGGAAGATAAGATCC
1 AACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGCTCTACTGCAACTTCAGGAAGATAAGATCC
*
60836399 ACCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTTCAGGGGAATGAGATTCGCTATCTTCAG
66 ACCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAG
* * *
60836464 TCTGCTCAGCTGT
131 TCTACTCCGCTGC
* * *
60836477 AACTTCAGAGAGATAAGGCTGGTGGCTTCAATCTGCTCTACTGCAACTTCAGGAAGATAAAATCC
1 AACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGCTCTACTGCAACTTCAGGAAGATAAGATCC
* * * *
60836542 GCCAGAATTTGTAGCTTCAATCTGTTCCACTGCAACTCCAGGGAAATAAGATTCGCTATCTTCAG
66 ACCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAG
60836607 TCTACTCCGCTGC
131 TCTACTCCGCTGC
60836620 AACTTCAGGGAGATAAG
1 AACTTCAGGGAGATAAG
60836637 ATTCACCATC
Statistics
Matches: 272, Mismatches: 30, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
143 270 0.99
144 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (143 bp):
AACTTCAGGGAGATAAGGTTGGTGGCTTCAATCTGCTCTACTGCAACTTCAGGAAGATAAGATCC
ACCATAATTTGTAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAG
TCTACTCCGCTGC
Found at i:60836622 original size:45 final size:45
Alignment explanation
Indices: 60836571--60836728 Score: 124
Period size: 45 Copynumber: 3.5 Consensus size: 45
60836561 ATCTGTTCCA
* *
60836571 CTGCAACTCCAGGGAAATAAGATTCGCTATCTTC-AGTCTACTCCG
1 CTGCAACTCCAGGGAAATAAGATTCACCATCTTCGA-TCTACTCCG
* * * *
60836616 CTGCAACTTCAGGGAGATAAGATTCACCATCTTCGATCTACTTCA
1 CTGCAACTCCAGGGAAATAAGATTCACCATCTTCGATCTACTCCG
* * * * * * * *
60836661 CTGTAACTTCAAGGAGATAAGA-TCTACGA-CTTCAATCTGCTCCA
1 CTGCAACTCCAGGGAAATAAGATTC-ACCATCTTCGATCTACTCCG
* * *
60836705 CTGCTACTTCAGGGAAATGAGATT
1 CTGCAACTCCAGGGAAATAAGATT
60836729 TTTGGATTCA
Statistics
Matches: 93, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
44 31 0.33
45 61 0.66
46 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (45 bp):
CTGCAACTCCAGGGAAATAAGATTCACCATCTTCGATCTACTCCG
Found at i:60837132 original size:46 final size:46
Alignment explanation
Indices: 60837079--60837320 Score: 270
Period size: 46 Copynumber: 5.3 Consensus size: 46
60837069 ATTTGTGGTT
* *
60837079 TCTTCCATCCATCCCACTGCCACTCAAGGGTATAGGATTTGTATCA
1 TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
* * * *
60837125 TCCTCCATCCATCCCACCGCAACTCAAGGGTATGGGATTTGTATCA
1 TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
* * * *
60837171 TCTTCAATCCATCCCACCGTAACT-AAGGGGTATGGGATTTTTATCA
1 TCTTCAATCCATCCCACTGCAACTCAA-GGGTATAGGATTTGTATCA
* * * * *
60837217 ACTTCAATCCATCCCACTACAATTCAGGGGTATAGGATTTGTATCT
1 TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
* * * * * *
60837263 TCTTCAATCCATCCCATTGAAACTCAGGGGTACAAGATTTGTATCC
1 TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
*
60837309 TTTTCAATCCAT
1 TCTTCAATCCAT
60837321 TGATCTGGGT
Statistics
Matches: 168, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
45 2 0.01
46 165 0.98
47 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.31
Consensus pattern (46 bp):
TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
Found at i:60838043 original size:3 final size:3
Alignment explanation
Indices: 60838035--60838105 Score: 106
Period size: 3 Copynumber: 23.7 Consensus size: 3
60838025 ACTCTCTATT
* * * *
60838035 TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTT TTC TTC TTT TTT TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
60838083 TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TT
60838106 TTTAGGAGGT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (3 bp):
TTC
Found at i:60843897 original size:13 final size:13
Alignment explanation
Indices: 60843879--60843903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60843869 GGACGGAAAC
60843879 ACGGCCGTGCGAT
1 ACGGCCGTGCGAT
60843892 ACGGCCGTGCGA
1 ACGGCCGTGCGA
60843904 AAACAGGGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.40, T:0.12
Consensus pattern (13 bp):
ACGGCCGTGCGAT
Found at i:60845301 original size:19 final size:19
Alignment explanation
Indices: 60845277--60845314 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
60845267 TAAATTACAT
60845277 AGTCAAAGAAGGAGTTATG
1 AGTCAAAGAAGGAGTTATG
60845296 AGTCAAAGAAGGAGTTATG
1 AGTCAAAGAAGGAGTTATG
60845315 CTGTACGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.32, T:0.21
Consensus pattern (19 bp):
AGTCAAAGAAGGAGTTATG
Found at i:60851300 original size:19 final size:19
Alignment explanation
Indices: 60851272--60851308 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
60851262 ATAATCAAAG
*
60851272 AAAATGAAATAAATAATAT
1 AAAATAAAATAAATAATAT
60851291 AAAATAAAATAAATAATA
1 AAAATAAAATAAATAATA
60851309 GGACAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (19 bp):
AAAATAAAATAAATAATAT
Found at i:60851347 original size:28 final size:29
Alignment explanation
Indices: 60851311--60851366 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
60851301 AAATAATAGG
*
60851311 ACAA-TTTTAAATAAATGA-TATAAAAAAA
1 ACAAGTTTAAAATAAAT-ACTATAAAAAAA
*
60851339 ACAAGTTTAAAATAGATACTATAAAAAA
1 ACAAGTTTAAAATAAATACTATAAAAAA
60851367 CAATTTGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (29 bp):
ACAAGTTTAAAATAAATACTATAAAAAAA
Found at i:60851435 original size:27 final size:26
Alignment explanation
Indices: 60851405--60851553 Score: 76
Period size: 27 Copynumber: 5.7 Consensus size: 26
60851395 TTAAAACGAT
60851405 TAATATACAAAA-CAATCTAAAATAAAA
1 TAATATACAAAATCAAT-TAAAAT-AAA
* *
60851432 TAATATATAAAATCACTTAAAATAAA
1 TAATATACAAAATCAATTAAAATAAA
* * * *
60851458 TAATA-AGAAAAACAATTTAAGATGACA
1 TAATATACAAAATCAA-TTAAAAT-AAA
* *
60851485 T-ATATA-AAAAT-ATTTAGAATAAA
1 TAATATACAAAATCAATTAAAATAAA
* * **
60851508 TAATGCGTAAAAAAGAAATTTAAAATAAA
1 TAAT--ATACAAAATCAA-TTAAAATAAA
*
60851537 TAATATATAAAAT-AATT
1 TAATATACAAAATCAATT
60851554 TGAAGCTAAA
Statistics
Matches: 93, Mismatches: 19, Indels: 22
0.69 0.14 0.16
Matches are distributed among these distances:
23 3 0.03
24 7 0.08
25 10 0.11
26 25 0.27
27 31 0.33
28 4 0.04
29 13 0.14
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (26 bp):
TAATATACAAAATCAATTAAAATAAA
Found at i:60851462 original size:53 final size:51
Alignment explanation
Indices: 60851405--60851550 Score: 136
Period size: 53 Copynumber: 2.8 Consensus size: 51
60851395 TTAAAACGAT
* *
60851405 TAATATACAAAACAATCTAAAATAAAATAATATATAAAATCACTTAAAATAAA
1 TAATATAAAAAACAATTTAAAAT-AAATAATATATAAAAT-ACTTAAAATAAA
* * * *
60851458 TAATA-AGAAAAACAATTTAAGATGACAT-ATATA-AAAATATTTAGAATAAA
1 TAATATA-AAAAACAATTTAAAAT-AAATAATATATAAAATACTTAAAATAAA
* *
60851508 TAATGCGTAAAAAAGAAATTTAAAATAAATAATATATAAAATA
1 TAAT--ATAAAAAA-CAATTTAAAATAAATAATATATAAAATA
60851551 ATTTGAAGCT
Statistics
Matches: 75, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
50 14 0.19
51 5 0.07
52 14 0.19
53 36 0.48
54 6 0.08
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (51 bp):
TAATATAAAAAACAATTTAAAATAAATAATATATAAAATACTTAAAATAAA
Found at i:60851477 original size:26 final size:26
Alignment explanation
Indices: 60851311--60851554 Score: 124
Period size: 26 Copynumber: 9.3 Consensus size: 26
60851301 AAATAATAGG
* *
60851311 ACAATTTTAAATAAATGATATAAAAAAA
1 ACAATTTAAAATAAAT-A-ATATAAAAA
* *
60851339 ACAAGTTTAAAATAGATACTATAAAAA
1 ACAA-TTTAAAATAAATAATATAAAAA
* * * * * *
60851366 ACAATTTGAAGTGAATAATGT--GAG
1 ACAATTTAAAATAAATAATATAAAAA
** * *
60851390 ACAATTTAAAACGATTAATATACAAA
1 ACAATTTAAAATAAATAATATAAAAA
*
60851416 ACAATCTAAAATAAAATAATATATAAAA
1 ACAATTTAAAAT-AAATAATATA-AAAA
* *
60851444 TC-ACTTAAAATAAATAATA-AGAAAA
1 ACAATTTAAAATAAATAATATA-AAAA
* *
60851469 ACAATTTAAGATGACAT-ATAT-AAAA
1 ACAATTTAAAAT-AAATAATATAAAAA
* * *
60851494 A-TATTTAGAATAAATAATGCGTAAAAA
1 ACAATTTAAAATAAATAAT--ATAAAAA
* *
60851521 AGAAATTTAAAATAAATAATATATAAA
1 A-CAATTTAAAATAAATAATATAAAAA
*
60851548 ATAATTT
1 ACAATTT
60851555 GAAGCTAAAA
Statistics
Matches: 160, Mismatches: 42, Indels: 30
0.69 0.18 0.13
Matches are distributed among these distances:
23 3 0.02
24 26 0.16
25 11 0.07
26 46 0.29
27 40 0.25
28 9 0.06
29 25 0.16
ACGTcount: A:0.59, C:0.06, G:0.07, T:0.28
Consensus pattern (26 bp):
ACAATTTAAAATAAATAATATAAAAA
Found at i:60852950 original size:20 final size:20
Alignment explanation
Indices: 60852921--60852958 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
60852911 TTAATCTTAT
60852921 TTATTATTTTTGGTTTATTA
1 TTATTATTTTTGGTTTATTA
*
60852941 TTATTGTTTTTGGTTTAT
1 TTATTATTTTTGGTTTAT
60852959 AACGGGACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.13, T:0.71
Consensus pattern (20 bp):
TTATTATTTTTGGTTTATTA
Found at i:60853648 original size:143 final size:142
Alignment explanation
Indices: 60853453--60854022 Score: 747
Period size: 143 Copynumber: 4.0 Consensus size: 142
60853443 TTTAGGGAGT
* * *
60853453 TGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTAGTAGCTTCA
1 TGGTGGCTTCAATCTG-TTCACTACAACTTCAGGAAGATAAGATTCGCCATAATTTGTAGCTTCA
* *
60853518 ATCTTTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCATTATGCTCCGCTGTAACTTC
65 ATCTTTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCATTATGCTCCGCTGCAACTTC
60853583 AGGGAGATAAGGC
130 AGGGAGATAAGGC
*
60853596 TGGTGGCTTCAATCTGTTCTACTACAACTTCAGGAAGATAAGATTCGTCATAATTTGTAGCTTCA
1 TGGTGGCTTCAATCTGTTC-ACTACAACTTCAGGAAGATAAGATTCGCCATAATTTGTAGCTTCA
* ** * * * * *
60853661 ATCTATTCCACTATAACTTTAGGGAAATGAGATTCGCTATCTTC-TGTCTACTCCACTGCAACTT
65 ATCTTTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAT-TATGCTCCGCTGCAACTT
* *
60853725 CAAGGAGATAATGC
129 CAGGGAGATAAGGC
* * *
60853739 TGGTAGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGA-TCTGCCATAATTTGTAGCTTC
1 TGGTGGCTTCAATCTG-TTCACTACAACTTCAGGAAGATAAGATTC-GCCATAATTTGTAGCTTC
* * *
60853803 AATCTTTTCCACTGTAACTTCAGGGAAAATATA-CTT-GCTATCCTCA-TATTGCTCCGCTGCAA
64 AATCTTTTCCACTGCAACTTCAGGG-AAATA-AGATTCGCTATCTTCATTA-TGCTCCGCTGCAA
60853865 CTTCAGGGAGATAAGGC
126 CTTCAGGGAGATAAGGC
* * *
60853882 TGGTGGCTTCAATCTGTTCGACTGA-AACTTCAGGAAGATAAGATTCACCATAATTTGTAGATAC
1 TGGTGGCTTCAATCTGTTC-ACT-ACAACTTCAGGAAGATAAGATTCGCCATAATTTGTAGCTTC
* * * *
60853946 AATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAATCTGCTCCGCTGCAACTT
64 AATCTTTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCATTATGCTCCGCTGCAACTT
60854011 CAGGGAGATAAG
129 CAGGGAGATAAG
60854023 ATTCGCCATC
Statistics
Matches: 370, Mismatches: 43, Indels: 28
0.84 0.10 0.06
Matches are distributed among these distances:
141 1 0.00
142 15 0.04
143 342 0.92
144 11 0.03
145 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (142 bp):
TGGTGGCTTCAATCTGTTCACTACAACTTCAGGAAGATAAGATTCGCCATAATTTGTAGCTTCAA
TCTTTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCATTATGCTCCGCTGCAACTTCA
GGGAGATAAGGC
Found at i:60853973 original size:286 final size:286
Alignment explanation
Indices: 60853453--60854021 Score: 883
Period size: 286 Copynumber: 2.0 Consensus size: 286
60853443 TTTAGGGAGT
* *
60853453 TGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTAGTAGCTTCA
1 TGGTAGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTAGTAGCTTCA
* * *
60853518 ATCTTTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCATTATGCTCCGCTGTAACTTC
66 ATCTTTTCCACTGCAACTTCAGGGAAATAAGACTTGCTATCCTCATTATGCTCCGCTGCAACTTC
* **
60853583 AGGGAGATAAGGCTGGTGGCTTCAATCTGTTCTACTACAACTTCAGGAAGATAAGATTCGTCATA
131 AGGGAGATAAGGCTGGTGGCTTCAATCTGTTCGACTACAACTTCAGGAAGATAAGATTCACCATA
* * * * **
60853648 ATTTGTAGCTTCAATCTATTCCACTATAACTTTAGGGAAATGAGATTCGCTATCTTCTGTCTACT
196 ATTTGTAGATACAATCTATTCCACTACAACTTCAGGGAAATGAGATTCGCTATCTTCAATCTACT
60853713 CCACTGCAACTTCAAGGAGATAATGC
261 CCACTGCAACTTCAAGGAGATAATGC
* *
60853739 TGGTAGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTCA
1 TGGTAGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTAGTAGCTTCA
* *
60853804 ATCTTTTCCACTGTAACTTCAGGGAAA-ATATACTTGCTATCCTCA-TATTGCTCCGCTGCAACT
66 ATCTTTTCCACTGCAACTTCAGGGAAATA-AGACTTGCTATCCTCATTA-TGCTCCGCTGCAACT
60853867 TCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTCGACTGA-AACTTCAGGAAGATAAGATTCACC
129 TCAGGGAGATAAGGCTGGTGGCTTCAATCTGTTCGACT-ACAACTTCAGGAAGATAAGATTCACC
* *
60853931 ATAATTTGTAGATACAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTCAATCT
193 ATAATTTGTAGATACAATCTATTCCACTACAACTTCAGGGAAATGAGATTCGCTATCTTCAATCT
* * *
60853996 GCTCCGCTGCAACTTCAGGGAGATAA
258 ACTCCACTGCAACTTCAAGGAGATAA
60854022 GATTCGCCAT
Statistics
Matches: 257, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
285 3 0.01
286 253 0.98
287 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (286 bp):
TGGTAGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTAGTAGCTTCA
ATCTTTTCCACTGCAACTTCAGGGAAATAAGACTTGCTATCCTCATTATGCTCCGCTGCAACTTC
AGGGAGATAAGGCTGGTGGCTTCAATCTGTTCGACTACAACTTCAGGAAGATAAGATTCACCATA
ATTTGTAGATACAATCTATTCCACTACAACTTCAGGGAAATGAGATTCGCTATCTTCAATCTACT
CCACTGCAACTTCAAGGAGATAATGC
Found at i:60854009 original size:45 final size:45
Alignment explanation
Indices: 60853945--60854114 Score: 139
Period size: 45 Copynumber: 3.8 Consensus size: 45
60853935 TTTGTAGATA
* * *
60853945 CAATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTT
1 CAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCCATCTT
* *
60853990 CAATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTCGCCATCTT
1 CAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCCATCTT
** * * * * * *
60854035 TGATCTACTCTACAGCAACTTTAAGGAGATAAGATCTACG--A-CTT
1 CAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT-T-CGCCATCTT
* * * * *
60854079 CAATCTGCTCTACTGCTACTTTAGAGAGATAAGATT
1 CAATCTGCTCCACTGCAACTTCAGGGAAATAAGATT
60854115 TGTGGGTTCA
Statistics
Matches: 103, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
43 1 0.01
44 31 0.30
45 68 0.66
46 1 0.01
47 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (45 bp):
CAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCCATCTT
Found at i:60854538 original size:46 final size:46
Alignment explanation
Indices: 60854465--60854706 Score: 290
Period size: 46 Copynumber: 5.3 Consensus size: 46
60854455 ATTTATGGTT
* * * * *
60854465 TCTTCCATCCACCCCGCTACAAGTCAAGGGTATAGGATTTGTATCA
1 TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
*
60854511 TCTTCCATCCATCCCACTGCAACTCAAGGGTAT-GAGATTTGTATCA
1 TCTTCAATCCATCCCACTGCAACTCAAGGGTATAG-GATTTGTATCA
* ** *
60854557 TCTTCACTCCATCCCACTGCAACT-AAGGGGTACGGGATTTTTATCA
1 TCTTCAATCCATCCCACTGCAACTCAA-GGGTATAGGATTTGTATCA
* * *
60854603 TCTTCAATCCATTCCACTGCAACTCAGGGGTATAGGATTTGTATCT
1 TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
* * * * *
60854649 TCTTCAATCCATCCCACTACAACTTAGGGGTACAGGATTTGTATCT
1 TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
60854695 TCTTCAATCCAT
1 TCTTCAATCCAT
60854707 TGATCTGGGT
Statistics
Matches: 173, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
45 3 0.02
46 168 0.97
47 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (46 bp):
TCTTCAATCCATCCCACTGCAACTCAAGGGTATAGGATTTGTATCA
Found at i:60854707 original size:92 final size:92
Alignment explanation
Indices: 60854464--60854707 Score: 321
Period size: 92 Copynumber: 2.7 Consensus size: 92
60854454 AATTTATGGT
* * * * * * *
60854464 TTCTTCCATCCACCCCGCTACAAGTCAA-GGGTATAGGATTTGTATCATCTTCCATCCATCCCAC
1 TTCTTCAATCCATCCCACTACAACT-AAGGGGTACAGGATTTGTATCATCTTCAATCCATTCCAC
60854528 TGCAACTCAAGGGTATGAGATTTGTATC
65 TGCAACTCAAGGGTATGAGATTTGTATC
* * * * *
60854556 ATCTTCACTCCATCCCACTGCAACTAAGGGGTACGGGATTTTTATCATCTTCAATCCATTCCACT
1 TTCTTCAATCCATCCCACTACAACTAAGGGGTACAGGATTTGTATCATCTTCAATCCATTCCACT
*
60854621 GCAACTCAGGGGTAT-AGGATTTGTATC
66 GCAACTCAAGGGTATGA-GATTTGTATC
* *
60854648 TTCTTCAATCCATCCCACTACAACTTAGGGGTACAGGATTTGTATCTTCTTCAATCCATT
1 TTCTTCAATCCATCCCACTACAACTAAGGGGTACAGGATTTGTATCATCTTCAATCCATT
60854708 GATCTGGGTA
Statistics
Matches: 130, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
91 3 0.02
92 127 0.98
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (92 bp):
TTCTTCAATCCATCCCACTACAACTAAGGGGTACAGGATTTGTATCATCTTCAATCCATTCCACT
GCAACTCAAGGGTATGAGATTTGTATC
Found at i:60855253 original size:3 final size:3
Alignment explanation
Indices: 60855245--60855306 Score: 106
Period size: 3 Copynumber: 20.7 Consensus size: 3
60855235 CCTCTCCATT
*
60855245 TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
60855293 TTT TTC TTC TTC TT
1 TTC TTC TTC TTC TT
60855307 TTTTAGGAGG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:60860125 original size:19 final size:19
Alignment explanation
Indices: 60860103--60860139 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
60860093 TAATCAAAGA
60860103 AAAATGAAATAAATAATAT
1 AAAATGAAATAAATAATAT
60860122 AAAATGAAATAAATAATA
1 AAAATGAAATAAATAATA
60860140 GGACAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.24
Consensus pattern (19 bp):
AAAATGAAATAAATAATAT
Found at i:60860177 original size:24 final size:24
Alignment explanation
Indices: 60860144--60860192 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
60860134 ATAATAGGAC
*
60860144 AATTTTAAATAAATGA-TATAAAAA
1 AATTTAAAATAAAT-ACTATAAAAA
*
60860168 AATTTAAAATAGATACTATAAAAA
1 AATTTAAAATAAATACTATAAAAA
60860192 A
1 A
60860193 CAATTTGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 21 0.95
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (24 bp):
AATTTAAAATAAATACTATAAAAA
Found at i:60860269 original size:26 final size:25
Alignment explanation
Indices: 60860231--60860400 Score: 118
Period size: 24 Copynumber: 6.7 Consensus size: 25
60860221 TTAAAACGAT
* *
60860231 TAATATACAAAAAAATCTAAAATAAAA
1 TAATATA-TAAAAAATATAAAAT-AAA
60860258 TAATATATAAAACAACT-TAAAATAAA
1 TAATATATAAAA-AA-TATAAAATAAA
* * * *
60860284 TAATA-AGAAAAACAGTTTAAGATGACA
1 TAATATATAAAAA-A-TATAAAAT-AAA
*
60860311 T-ATATATAAAAAA-ATAGAATAAA
1 TAATATATAAAAAATATAAAATAAA
*
60860334 TAATATGTAAAAAAT-TAAAATAAA
1 TAATATATAAAAAATATAAAATAAA
* *
60860358 TAATATATATAAAAGTATAAAATAAT
1 TAATATATA-AAAAATATAAAATAAA
* *
60860384 TTA-ATATAAATAATATA
1 TAATATATAAAAAATATA
60860401 TGAAATCTTA
Statistics
Matches: 115, Mismatches: 18, Indels: 23
0.74 0.12 0.15
Matches are distributed among these distances:
23 3 0.03
24 39 0.34
25 17 0.15
26 31 0.27
27 24 0.21
28 1 0.01
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (25 bp):
TAATATATAAAAAATATAAAATAAA
Found at i:60860344 original size:24 final size:24
Alignment explanation
Indices: 60860231--60860391 Score: 101
Period size: 27 Copynumber: 6.3 Consensus size: 24
60860221 TTAAAACGAT
*
60860231 TAATATACAAAAAAATCTAAAATAAAA
1 TAATATATAAAAAAA--TAAAAT-AAA
*
60860258 TAATATATAAAACAACTTAAAATAAA
1 TAATATATAAAA-AA-ATAAAATAAA
* * * *
60860284 TAATA-AGAAAAACAGTTTAAGATGACA
1 TAATATATAAAAA-A--ATAAAAT-AAA
*
60860311 T-ATATATAAAAAAATAGAATAAA
1 TAATATATAAAAAAATAAAATAAA
* *
60860334 TAATATGTAAAAAATTAAAATAAA
1 TAATATATAAAAAAATAAAATAAA
* *
60860358 TAATATATATAAAAGTATAAAATAATT
1 TAATATATA-AAAA-AATAAAATAA-A
60860385 TAATATA
1 TAATATA
60860392 AATAATATAT
Statistics
Matches: 106, Mismatches: 18, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
23 3 0.03
24 32 0.30
25 10 0.09
26 26 0.25
27 33 0.31
28 2 0.02
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (24 bp):
TAATATATAAAAAAATAAAATAAA
Found at i:60860382 original size:50 final size:48
Alignment explanation
Indices: 60860240--60860382 Score: 121
Period size: 50 Copynumber: 2.8 Consensus size: 48
60860230 TTAATATACA
60860240 AAAAAATCTAAAATAAAATAATATATAAAACA-ACTTAAAATAAATAATAAG
1 AAAAAAT-TAAAATAAAATAATATATAAAA-ATA--TAAAATAAATAATAAG
* * * * * *
60860291 AAAAACAGTTTAAGATGACAT-ATATATAAAAAAATAGAATAAATAATATG
1 AAAAA-A--TTAAAATAAAATAATATATAAAAATATAAAATAAATAATAAG
60860341 TAAAAAATTAAAAT-AAATAATATATATAAAAGTATAAAATAA
1 -AAAAAATTAAAATAAAATAATATATA-AAAA-TATAAAATAA
60860383 TTTAATATAA
Statistics
Matches: 75, Mismatches: 9, Indels: 17
0.74 0.09 0.17
Matches are distributed among these distances:
47 3 0.04
48 13 0.17
49 4 0.05
50 23 0.31
51 11 0.15
52 12 0.16
53 8 0.11
54 1 0.01
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (48 bp):
AAAAAATTAAAATAAAATAATATATAAAAATATAAAATAAATAATAAG
Found at i:60860406 original size:26 final size:26
Alignment explanation
Indices: 60860373--60860509 Score: 115
Period size: 26 Copynumber: 5.5 Consensus size: 26
60860363 TATATAAAAG
*
60860373 TATAAAATAATTTAATATAAATAATA
1 TATAAAATAATTTAAAATAAATAATA
* *
60860399 TATGAAAT--CTTAAAATAAATAATA
1 TATAAAATAATTTAAAATAAATAATA
* * * * * *
60860423 -ATAAAACAGTATATACTAAAT-ACA
1 TATAAAATAATTTAAAATAAATAATA
* *
60860447 TAT-AAA-ACTTTAAAATAAATAGTA
1 TATAAAATAATTTAAAATAAATAATA
* *
60860471 TATAAAACAATTTAAAATAAATAATG
1 TATAAAATAATTTAAAATAAATAATA
60860497 TATAAAATAATTT
1 TATAAAATAATTT
60860510 GAAGCTAAAA
Statistics
Matches: 85, Mismatches: 20, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
23 15 0.18
24 23 0.27
25 13 0.15
26 34 0.40
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (26 bp):
TATAAAATAATTTAAAATAAATAATA
Found at i:60860413 original size:34 final size:35
Alignment explanation
Indices: 60860341--60860474 Score: 91
Period size: 34 Copynumber: 3.8 Consensus size: 35
60860331 AAATAATATG
* *
60860341 TAAAA-AATTAAAATAAATAATATATATAAAAGTA
1 TAAAATAATTAAAATAAATAATATATAGAAAACTA
* *
60860375 TAAAATAATTTAATATAAATAATATAT-GAAATCT-
1 TAAAATAA-TTAAAATAAATAATATATAGAAAACTA
* *
60860409 TAAAATAAATAATAATAAA-ACAGTATATACTAAATACATA
1 TAAAATAATTAA-AATAAATA-A-TATATA-GAAA-AC-TA
*
60860449 TAAAACT--TTAAAATAAATAGTATATA
1 TAAAA-TAATTAAAATAAATAATATATA
60860475 AAACAATTTA
Statistics
Matches: 78, Mismatches: 10, Indels: 21
0.72 0.09 0.19
Matches are distributed among these distances:
33 4 0.05
34 19 0.24
35 11 0.14
36 17 0.22
37 9 0.12
38 7 0.09
39 5 0.06
40 5 0.06
41 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (35 bp):
TAAAATAATTAAAATAAATAATATATAGAAAACTA
Found at i:60860492 original size:49 final size:49
Alignment explanation
Indices: 60860373--60860495 Score: 135
Period size: 49 Copynumber: 2.5 Consensus size: 49
60860363 TATATAAAAG
* *
60860373 TATAAAATAATTTAATATAAATAATATATGAAATCTTAAAATAAATAATA
1 TATAAAACAATTTAAAATAAATAATATA-GAAATCTTAAAATAAATAATA
* * * * *
60860423 -ATAAAACAGTATATACTAAATACATATA-AAA-CTTTAAAATAAATAGTA
1 TATAAAACAATTTAAAATAAATA-ATATAGAAATC-TTAAAATAAATAATA
60860471 TATAAAACAATTTAAAATAAATAAT
1 TATAAAACAATTTAAAATAAATAAT
60860496 GTATAAAATA
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
47 1 0.02
48 19 0.32
49 34 0.58
50 5 0.08
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (49 bp):
TATAAAACAATTTAAAATAAATAATATAGAAATCTTAAAATAAATAATA
Found at i:60861874 original size:14 final size:14
Alignment explanation
Indices: 60861855--60861885 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
60861845 CTTAATCCTA
*
60861855 TTTATTATTTTTGG
1 TTTATTATTATTGG
60861869 TTTATTATTATTGG
1 TTTATTATTATTGG
60861883 TTT
1 TTT
60861886 TGGTTTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.13, T:0.71
Consensus pattern (14 bp):
TTTATTATTATTGG
Found at i:60862853 original size:41 final size:41
Alignment explanation
Indices: 60862806--60862888 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
60862796 CAAGGACCCC
*
60862806 AATCAATCCCACACGCTTAGGCGTTGATAGTCACAAAACTA
1 AATCAATCCCACACGCTTAGGCATTGATAGTCACAAAACTA
60862847 AATCAATCCCACACGCTTAGGCATTGATAGTCACAAAACTA
1 AATCAATCCCACACGCTTAGGCATTGATAGTCACAAAACTA
60862888 A
1 A
60862889 CTATAAATAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.27, G:0.13, T:0.22
Consensus pattern (41 bp):
AATCAATCCCACACGCTTAGGCATTGATAGTCACAAAACTA
Found at i:60864818 original size:27 final size:26
Alignment explanation
Indices: 60864762--60864829 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 26
60864752 AGAATCAGCC
* * *
60864762 ATAAAAATAAAAATATAGTTTAAAAG
1 ATAAAAAAAAAAATATAGTCTAAAAA
60864788 ATAAAAAAACAAAATA-AGTCTAAGAAA
1 ATAAAAAAA-AAAATATAGTCTAA-AAA
60864815 ATAACAATAAAAAAA
1 ATAA-AA-AAAAAAA
60864830 CTAAAAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
26 14 0.40
27 12 0.34
28 6 0.17
29 3 0.09
ACGTcount: A:0.71, C:0.04, G:0.06, T:0.19
Consensus pattern (26 bp):
ATAAAAAAAAAAATATAGTCTAAAAA
Found at i:60866608 original size:92 final size:92
Alignment explanation
Indices: 60866455--60866840 Score: 451
Period size: 92 Copynumber: 4.2 Consensus size: 92
60866445 TAGATTGCTT
* * *
60866455 ATAAGTGCTATTCCAACCGATAACACGCCAGATGCACATAGTGAAAAGCCTATAGGTTAAATATT
1 ATAAGAGCTATTCCAACCGATAACACGCCAGATGCACATAGTGCAAAGCCTATAGGCTAAATATT
60866520 C-CCCACCAATAACACACCAGTTTGTTC
66 CTCCC-CCAATAACACACCAGTTTGTTC
* * *
60866547 ATAAGAGCTATTCCAACCGATATCACGCCAGATGCACATAGTGCAGAG-CTCGTAGGCTAAATAT
1 ATAAGAGCTATTCCAACCGATAACACGCCAGATGCACATAGTGCAAAGCCT-ATAGGCTAAATAT
** * *
60866611 TCTCCCCCAATAACATGCCAGATTGCTC
65 TCTCCCCCAATAACACACCAGTTTGTTC
* *
60866639 ATAAGAGCTATTCCAACTC-ATAACTCGCCAGATGCACATAGTGCAAAGCCTATAGACTAAATAT
1 ATAAGAGCTATTCCAAC-CGATAACACGCCAGATGCACATAGTGCAAAGCCTATAGGCTAAATAT
*
60866703 TCTCCCTCAATAACACACCAGTTT-TCTC
65 TCTCCCCCAATAACACACCAGTTTGT-TC
* * * * *
60866731 GTAAGAGCTATTCCAATCGATAACACGCCAAATGCACATAGTACAAAG-CTCGTAGGCTAAATAT
1 ATAAGAGCTATTCCAACCGATAACACGCCAGATGCACATAGTGCAAAGCCT-ATAGGCTAAATAT
* * *** *
60866795 TTTCCCTCAATAACATGTCAATTT-TCTC
65 TCTCCCCCAATAACACACCAGTTTGT-TC
*
60866823 ATAAGAGCTATTTCAACC
1 ATAAGAGCTATTCCAACC
60866841 AATGTGACGC
Statistics
Matches: 252, Mismatches: 35, Indels: 14
0.84 0.12 0.05
Matches are distributed among these distances:
91 5 0.02
92 241 0.96
93 6 0.02
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.25
Consensus pattern (92 bp):
ATAAGAGCTATTCCAACCGATAACACGCCAGATGCACATAGTGCAAAGCCTATAGGCTAAATATT
CTCCCCCAATAACACACCAGTTTGTTC
Found at i:60866745 original size:184 final size:184
Alignment explanation
Indices: 60866436--60866840 Score: 575
Period size: 184 Copynumber: 2.2 Consensus size: 184
60866426 TAATCATCTG
* * *
60866436 ATAACATGTTAGATTGCTTATAAGTGCTATTCCAACCGATAACACGCCAGATGCACATAGTGAAA
1 ATAACATGTCAGATTGCTCATAAGAGCTATTCCAACCGATAACACGCCAGATGCACATAGTGAAA
**
60866501 AGCCTATAGGTTAAATATTCCCCACCAATAACACACCAGTTTGTTCATAAGAGCTATTCCAACCG
66 AGCCTATAGACTAAATATTCCCCACCAATAACACACCAGTTTGTTCATAAGAGCTATTCCAACCG
* * * *
60866566 ATATCACGCCAGATGCACATAGTGCAGAGCTCGTAGGCTAAATATTCTCCCCCA
131 ATAACACGCCAAATGCACATAGTACAAAGCTCGTAGGCTAAATATTCTCCCCCA
* * *
60866620 ATAACATGCCAGATTGCTCATAAGAGCTATTCCAACTC-ATAACTCGCCAGATGCACATAGTGCA
1 ATAACATGTCAGATTGCTCATAAGAGCTATTCCAAC-CGATAACACGCCAGATGCACATAGTGAA
* *
60866684 AAGCCTATAGACTAAATATTCTCCC-TCAATAACACACCAGTTT-TCTCGTAAGAGCTATTCCAA
65 AAGCCTATAGACTAAATATTC-CCCACCAATAACACACCAGTTTGT-TCATAAGAGCTATTCCAA
* * *
60866747 TCGATAACACGCCAAATGCACATAGTACAAAGCTCGTAGGCTAAATATTTTCCCTCA
128 CCGATAACACGCCAAATGCACATAGTACAAAGCTCGTAGGCTAAATATTCTCCCCCA
* *
60866804 ATAACATGTCA-ATTTTCTCATAAGAGCTATTTCAACC
1 ATAACATGTCAGA-TTGCTCATAAGAGCTATTCCAACC
60866841 AATGTGACGC
Statistics
Matches: 197, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
183 3 0.02
184 190 0.96
185 4 0.02
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (184 bp):
ATAACATGTCAGATTGCTCATAAGAGCTATTCCAACCGATAACACGCCAGATGCACATAGTGAAA
AGCCTATAGACTAAATATTCCCCACCAATAACACACCAGTTTGTTCATAAGAGCTATTCCAACCG
ATAACACGCCAAATGCACATAGTACAAAGCTCGTAGGCTAAATATTCTCCCCCA
Found at i:60869086 original size:23 final size:23
Alignment explanation
Indices: 60869036--60869089 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
60869026 TCAGCTCGTA
*
60869036 TGAGCTTACTGATTCAGCTTCTC
1 TGAGCTTACTGATTCAGCTTATC
* *
60869059 AGAGCTTACTGTTTCAGCTTAAT-
1 TGAGCTTACTGATTCAGCTT-ATC
60869082 TGAGCTTA
1 TGAGCTTA
60869090 TTGTCTATCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 25 0.96
24 1 0.04
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (23 bp):
TGAGCTTACTGATTCAGCTTATC
Found at i:60877826 original size:22 final size:22
Alignment explanation
Indices: 60877800--60877843 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
60877790 GAAAATAATC
*
60877800 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
*
60877822 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
60877844 GCTAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:60895522 original size:6 final size:6
Alignment explanation
Indices: 60895492--60895555 Score: 60
Period size: 6 Copynumber: 10.7 Consensus size: 6
60895482 CGTTCCTTCC
* * *
60895492 TCTTTT TATTTT TCTATT TCTTTTT TCTTTTT TCTTTT TCATTT TC--TT
1 TCTTTT TCTTTT TCTTTT TC-TTTT TC-TTTT TCTTTT TCTTTT TCTTTT
*
60895540 TATTTT TCTTTT TCTT
1 TCTTTT TCTTTT TCTT
60895556 GACTTTCGGT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
4 3 0.06
6 33 0.69
7 12 0.25
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (6 bp):
TCTTTT
Found at i:60900962 original size:26 final size:26
Alignment explanation
Indices: 60900932--60900982 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
60900922 ACCAATGAAC
*
60900932 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
60900958 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
60900983 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:60901022 original size:103 final size:104
Alignment explanation
Indices: 60900838--60901060 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
60900828 AATGGATATC
60900838 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
60900903 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
60900942 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
60901006 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
60901045 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
60901061 TTATATACAA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.84
104 18 0.16
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:60901419 original size:29 final size:29
Alignment explanation
Indices: 60901386--60901449 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
60901376 TAATCCACCA
60901386 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
60901415 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
60901445 CCCAA
1 CCCAA
60901450 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:60901423 original size:30 final size:30
Alignment explanation
Indices: 60901393--60901449 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
60901383 CCACCCAACT
60901393 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
60901422 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
60901450 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:60908341 original size:26 final size:26
Alignment explanation
Indices: 60908305--60908356 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
60908295 CACCACTGAA
* *
60908305 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
60908331 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
60908357 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:60908430 original size:70 final size:71
Alignment explanation
Indices: 60908317--60908466 Score: 248
Period size: 70 Copynumber: 2.1 Consensus size: 71
60908307 GGGGAATCAT
* *
60908317 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
60908381 ATATCG
66 ATATCG
***
60908387 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
60908452 ATATCG
66 ATATCG
60908458 CACTTAGCA
1 CACTTAGCA
60908467 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 44 0.59
71 30 0.41
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
ATATCG
Found at i:60908570 original size:104 final size:103
Alignment explanation
Indices: 60908386--60908608 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
60908376 AATGGATATC
60908386 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
60908451 GATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
60908489 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
60908554 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
65 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
60908593 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
60908609 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 17 0.15
104 94 0.84
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:60908970 original size:29 final size:29
Alignment explanation
Indices: 60908937--60909000 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
60908927 TAATCCACCA
60908937 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
60908966 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
60908996 CCCAA
1 CCCAA
60909001 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:60908974 original size:30 final size:30
Alignment explanation
Indices: 60908944--60909000 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
60908934 CCACCCAACT
60908944 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
60908973 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
60909001 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:60911071 original size:6 final size:6
Alignment explanation
Indices: 60911004--60911075 Score: 54
Period size: 6 Copynumber: 11.2 Consensus size: 6
60910994 CTAGTTAACG
* * * *
60911004 TTTCTT CTTCTT TTTATT TTTCTT TTTATT GTTTCTTT TTTCAT TTTCATT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT -TTTC-TT TTTCTT TTTC-TT
*
60911055 TTCTTTGT TTTCTT TTTCTT T
1 TT-TCT-T TTTCTT TTTCTT T
60911076 ACTTTTGATT
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
6 32 0.63
7 13 0.25
8 6 0.12
ACGTcount: A:0.06, C:0.14, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTCTT
Found at i:60911082 original size:21 final size:21
Alignment explanation
Indices: 60911041--60911080 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
60911031 ATTGTTTCTT
*
60911041 TTTTCATTTTCATTTTCTTTG
1 TTTTCATTTTCATTTACTTTG
*
60911062 TTTTCTTTTTC-TTTACTTT
1 TTTTCATTTTCATTTACTTT
60911081 TGATTTGCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.07, C:0.15, G:0.03, T:0.75
Consensus pattern (21 bp):
TTTTCATTTTCATTTACTTTG
Found at i:60911520 original size:50 final size:51
Alignment explanation
Indices: 60911443--60911542 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 51
60911433 GAATAAGTTG
** *
60911443 TTTACTTGGTTACTTGATAGTCATTTTAGGT-CCCAGGATTCTTCTGCGTC
1 TTTACTTGGTTACCGGATAATCATTTTAGGTCCCCAGGATTCTTCTGCGTC
*
60911493 TTTACTTGGTTACCGGATAATCGTTTTAGGTCCCCAGGATTCTTCTGCGT
1 TTTACTTGGTTACCGGATAATCATTTTAGGTCCCCAGGATTCTTCTGCGT
60911543 TGTTTCTACT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
50 27 0.60
51 18 0.40
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.42
Consensus pattern (51 bp):
TTTACTTGGTTACCGGATAATCATTTTAGGTCCCCAGGATTCTTCTGCGTC
Found at i:60915828 original size:92 final size:91
Alignment explanation
Indices: 60915598--60915910 Score: 333
Period size: 92 Copynumber: 3.4 Consensus size: 91
60915588 TGATAATACA
* ** **
60915598 TCAGATTGCTCATAAGAATTATTCCCCCCAATAACACGTTAGATGCACATAGTGCAAAGCCCGTA
1 TCAGTTTGCTCATAAGAGCTATTCCAACCAATAACACGTTAGATGCACATAGTGCAAAGCCCGTA
*
60915663 GGCTAAATATTCTCCCTAATAACACG
66 GGCTAAATATTCTCCCTAGTAACACG
* * * * * * * *** * * * *
60915689 CCAATTTTCCCATAAGAGCTATTCCAGCCGATATCACACCAAATGCACATAATACAAAGCCCATA
1 TCAGTTTGCTCATAAGAGCTATTCCAACCAATAACACGTTAGATGCACATAGTGCAAAGCCCGTA
* *
60915754 GGATAAATATTCTCCTCTTGTAACACG
66 GGCTAAATATTCTCC-CTAGTAACACG
60915781 TCAGTTTGCTCATAAGAGCTATTCCAACCAATAACACGTTAGATGCACATAGTGCAAAGCCCGTA
1 TCAGTTTGCTCATAAGAGCTATTCCAACCAATAACACGTTAGATGCACATAGTGCAAAGCCCGTA
* *
60915846 GGCTAAATATTCTTCCC-CGATAACAAG
66 GGCTAAATATTC-TCCCTAG-TAACACG
* * *
60915873 -CTATTTTGTTCATAAGAGCTATTCCAACCAATATCACG
1 TC-AGTTTGCTCATAAGAGCTATTCCAACCAATAACACG
60915911 CCAGAACCTC
Statistics
Matches: 177, Mismatches: 41, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
91 63 0.36
92 111 0.63
93 3 0.02
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (91 bp):
TCAGTTTGCTCATAAGAGCTATTCCAACCAATAACACGTTAGATGCACATAGTGCAAAGCCCGTA
GGCTAAATATTCTCCCTAGTAACACG
Found at i:60917207 original size:18 final size:18
Alignment explanation
Indices: 60917173--60917206 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
60917163 ACCAGTTTAT
60917173 TCTTCTCTTTTTCTTTTC
1 TCTTCTCTTTTTCTTTTC
60917191 TCTTCTCTTTTT-TTTT
1 TCTTCTCTTTTTCTTTT
60917207 TTTGGTGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TCTTCTCTTTTTCTTTTC
Found at i:60926640 original size:17 final size:18
Alignment explanation
Indices: 60926620--60926653 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
60926610 AATTATGCAA
*
60926620 AAATTTTAAAA-TTTTAT
1 AAATTCTAAAAGTTTTAT
60926637 AAATTCTAAAAGTTTTA
1 AAATTCTAAAAGTTTTA
60926654 ATCAAACTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (18 bp):
AAATTCTAAAAGTTTTAT
Found at i:60929613 original size:12 final size:12
Alignment explanation
Indices: 60929596--60929620 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60929586 TTTAGTTGAA
60929596 TCAAATTCATTT
1 TCAAATTCATTT
60929608 TCAAATTCATTT
1 TCAAATTCATTT
60929620 T
1 T
60929621 TAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (12 bp):
TCAAATTCATTT
Found at i:60934134 original size:26 final size:26
Alignment explanation
Indices: 60934098--60934165 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
60934088 TTACATCATT
*
60934098 GCTCACACGAGCTGTGAAATGGGCCA
1 GCTCACACGAGCTGCGAAATGGGCCA
60934124 GCTCACACGAGCTGCGAAATGGGCCA
1 GCTCACACGAGCTGCGAAATGGGCCA
*
60934150 GCTTACACGAGCTGCG
1 GCTCACACGAGCTGCG
60934166 GGTCGAAACG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.25, C:0.29, G:0.31, T:0.15
Consensus pattern (26 bp):
GCTCACACGAGCTGCGAAATGGGCCA
Found at i:60934766 original size:13 final size:13
Alignment explanation
Indices: 60934748--60934772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60934738 ATCATTTGAT
60934748 AAATTTTACTATG
1 AAATTTTACTATG
60934761 AAATTTTACTAT
1 AAATTTTACTAT
60934773 TTTACAAGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (13 bp):
AAATTTTACTATG
Found at i:60942695 original size:121 final size:119
Alignment explanation
Indices: 60942570--60942804 Score: 398
Period size: 121 Copynumber: 2.0 Consensus size: 119
60942560 ACCAAAATTT
* * *
60942570 TTTACTTATTATCATTTTAAAGTAATAATAAAAATATTCATATTTTTTAAGTATCGTTTATGTTA
1 TTTACATATTATCATTTTAAAATAATAATAAAAATATTCATATTTATTAAGTATCGTTTATGTTA
*
60942635 TATTTTTATTATATTTTTGTTATTGGCATGTTATTTTTAGTATTTTAATATAAAAA
66 TATTTTT-TTATATTTTT-TTATTGGCATATTATTTTTAGTATTTTAATATAAAAA
* *
60942691 TTTACATATTATCATTTTAAAATAATAATAAAAATATTCGTATTTATTATGTATCGTTTATGTTA
1 TTTACATATTATCATTTTAAAATAATAATAAAAATATTCATATTTATTAAGTATCGTTTATGTTA
60942756 TATTTTTTTATATTTTTTTATTGGCATATTATTTTTAGTATTTTAATAT
66 TATTTTTTTATATTTTTTTATTGGCATATTATTTTTAGTATTTTAATAT
60942805 TTTGATGTGG
Statistics
Matches: 108, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
119 31 0.29
120 10 0.09
121 67 0.62
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (119 bp):
TTTACATATTATCATTTTAAAATAATAATAAAAATATTCATATTTATTAAGTATCGTTTATGTTA
TATTTTTTTATATTTTTTTATTGGCATATTATTTTTAGTATTTTAATATAAAAA
Found at i:60944547 original size:24 final size:24
Alignment explanation
Indices: 60944513--60944558 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
60944503 CATACGAGCT
*
60944513 AGTTGCTGATATAGAGGCTGAGTC
1 AGTTGCCGATATAGAGGCTGAGTC
60944537 AGTTGCCGATATAGAGGCTGAG
1 AGTTGCCGATATAGAGGCTGAG
60944559 CCAGAGTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.13, G:0.35, T:0.26
Consensus pattern (24 bp):
AGTTGCCGATATAGAGGCTGAGTC
Found at i:60945319 original size:64 final size:64
Alignment explanation
Indices: 60945251--60945415 Score: 249
Period size: 64 Copynumber: 2.6 Consensus size: 64
60945241 TAAAACTTGT
*
60945251 AACAATCTTTGTAATATAAATTATGTTATATAAATTAAATACAGTACAACCATAATCTAATTGG
1 AACAAACTTTGTAATATAAATTATGTTATATAAATTAAATACAGTACAACCATAATCTAATTGG
* * * * * *
60945315 AACAAACTTTGCAATAGAAATTACGCTATATAAATTAAATACATTACCACCATAATCTAATTGG
1 AACAAACTTTGTAATATAAATTATGTTATATAAATTAAATACAGTACAACCATAATCTAATTGG
* *
60945379 AACAAACTTTGTAATATAAATTTTTTTATATAAATTA
1 AACAAACTTTGTAATATAAATTATGTTATATAAATTA
60945416 TATAAGCTCA
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 88 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (64 bp):
AACAAACTTTGTAATATAAATTATGTTATATAAATTAAATACAGTACAACCATAATCTAATTGG
Found at i:60948643 original size:47 final size:47
Alignment explanation
Indices: 60948562--60948678 Score: 123
Period size: 47 Copynumber: 2.5 Consensus size: 47
60948552 GCCAATACTG
* *** *
60948562 TGTCCCAGACACGGTCTTACACTGGTTAATATCTC-AAGTCGAAGCCA
1 TGTCCCAGACATGGTCTTACACTAACTAATATCTCGAAGCCGAAG-CA
* *
60948609 TGTCCCAGACATGGTCTTACACTAACT-ATCATCTCGTAGCCGACGCA
1 TGTCCCAGACATGGTCTTACACTAACTAAT-ATCTCGAAGCCGAAGCA
*
60948656 TGTCCCGGACAT-GTCTTACACTA
1 TGTCCCAGACATGGTCTTACACTA
60948679 GCCCTCATCT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
46 13 0.22
47 41 0.68
48 6 0.10
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (47 bp):
TGTCCCAGACATGGTCTTACACTAACTAATATCTCGAAGCCGAAGCA
Found at i:60964367 original size:12 final size:13
Alignment explanation
Indices: 60964331--60964368 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
60964321 AAATATTTGA
60964331 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
60964344 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
60964358 CTTG-TCTTAAT
1 CTTGTTCTTAAT
60964369 ATTCCAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:60968967 original size:24 final size:24
Alignment explanation
Indices: 60968935--60968982 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
60968925 CTTCTCATAC
60968935 CACTATTAGAATGAATTTTGATTA
1 CACTATTAGAATGAATTTTGATTA
*
60968959 CACTATTAGAATTAATTTTGATTA
1 CACTATTAGAATGAATTTTGATTA
60968983 AGTTATGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (24 bp):
CACTATTAGAATGAATTTTGATTA
Found at i:60976859 original size:22 final size:22
Alignment explanation
Indices: 60976832--60976876 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
60976822 GAAAAAGTAA
60976832 TAGCGACAAGAAAGGAAATCAT
1 TAGCGACAAGAAAGGAAATCAT
60976854 TAGCGACAAGAAAGGAAATCAT
1 TAGCGACAAGAAAGGAAATCAT
60976876 T
1 T
60976877 CTTCTTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.13, G:0.22, T:0.16
Consensus pattern (22 bp):
TAGCGACAAGAAAGGAAATCAT
Found at i:60977513 original size:21 final size:20
Alignment explanation
Indices: 60977474--60977528 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
60977464 AAATTTAATC
*
60977474 AAATTTTATATATTGTTTTA
1 AAATTTTATATATTCTTTTA
*
60977494 AAATTTTATTTTATTCTTTTTA
1 AAATTTTA-TATATTC-TTTTA
*
60977516 GAA-TTTATATATT
1 AAATTTTATATATT
60977529 TTTACTATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 13 0.45
21 9 0.31
22 7 0.24
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.62
Consensus pattern (20 bp):
AAATTTTATATATTCTTTTA
Found at i:60982872 original size:50 final size:50
Alignment explanation
Indices: 60982748--60982996 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
60982738 GATAATAACA
* * ** * *
60982748 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
60982799 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
60982849 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
60982899 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
60982954 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
60982997 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:60982926 original size:100 final size:104
Alignment explanation
Indices: 60982747--60982996 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
60982737 TGATAATAAC
**
60982747 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
60982812 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
60982849 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
60982912 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
60982954 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
60982997 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:60983112 original size:13 final size:13
Alignment explanation
Indices: 60983091--60983122 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
60983081 GCTTGGAACA
*
60983091 TCATCAAATAAAT
1 TCATAAAATAAAT
60983104 TCATAAAATAAAT
1 TCATAAAATAAAT
60983117 TCATAA
1 TCATAA
60983123 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:60983370 original size:30 final size:30
Alignment explanation
Indices: 60983334--60983391 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
60983324 CCTCGACTCT
*
60983334 AACTTTTTCAAAATTACAATTTTT-CCCCTA
1 AACTTTTACAAAATTAC-ATTTTTGCCCCTA
*
60983364 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACATTTTTGCCCC
60983392 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.31, C:0.24, G:0.02, T:0.43
Consensus pattern (30 bp):
AACTTTTACAAAATTACATTTTTGCCCCTA
Found at i:60983969 original size:5 final size:5
Alignment explanation
Indices: 60983953--60983984 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
60983943 TTCTTTTGTT
60983953 ATATA TATATA ATATA ATATA ATATA ATATA A
1 ATATA -ATATA ATATA ATATA ATATA ATATA A
60983985 AATATTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:60984030 original size:15 final size:15
Alignment explanation
Indices: 60983952--60984030 Score: 64
Period size: 15 Copynumber: 5.6 Consensus size: 15
60983942 TTTCTTTTGT
60983952 TATATATATATAATA
1 TATATATATATAATA
60983967 TA-ATATAATATAATA
1 TATATAT-ATATAATA
*
60983982 TA-AAATAT-TAATA
1 TATATATATATAATA
*
60983995 -ATA-ATCAT-TACT-
1 TATATAT-ATATAATA
*
60984007 TACATATATATAATA
1 TATATATATATAATA
60984022 TATATATAT
1 TATATATAT
60984031 TAACTAGAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
12 3 0.06
13 15 0.29
14 11 0.21
15 23 0.44
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (15 bp):
TATATATATATAATA
Found at i:60991100 original size:27 final size:27
Alignment explanation
Indices: 60991069--60991133 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
60991059 AATATACGAG
* *
60991069 AGGAATGCCTTCATGACAAATTCTGAA
1 AGGAATGCCTTCATGAAAAACTCTGAA
* *
60991096 GGGAATACCTTCATGAAAAACTCTGAA
1 AGGAATGCCTTCATGAAAAACTCTGAA
60991123 AGGAATGCCTT
1 AGGAATGCCTT
60991134 GATAGCATAC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AGGAATGCCTTCATGAAAAACTCTGAA
Found at i:61002797 original size:42 final size:42
Alignment explanation
Indices: 61002751--61002934 Score: 129
Period size: 42 Copynumber: 4.2 Consensus size: 42
61002741 GTCCCAAACG
** *
61002751 TGGTCTTATATGGGATCTCACATCGATGCCATATCCCAGATA
1 TGGTCTTATATGAAATCTCACATCGACGCCATATCCCAGATA
* ** * * *
61002793 TGGTCTTATA-CAAATTCTCATTTTGACGCCATGTCCCAGATG
1 TGGTCTTATATGAAA-TCTCACATCGACGCCATATCCCAGATA
* * * * *
61002835 TGGTATTACATGAAATCTCATATCAACACCATATCCCAGATA
1 TGGTCTTATATGAAATCTCACATCGACGCCATATCCCAGATA
* * *
61002877 TGGTCTTACATGATAA-CTCATACTGATGCTGATGCTATATCCCAGATA
1 TGGTCTTATATGA-AATCTC--AC--AT-C-GACGCCATATCCCAGATA
61002925 TGGTCTTATA
1 TGGTCTTATA
61002935 CGGGATCTTA
Statistics
Matches: 108, Mismatches: 25, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
41 1 0.01
42 75 0.69
43 5 0.05
44 1 0.01
46 2 0.02
47 1 0.01
48 23 0.21
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (42 bp):
TGGTCTTATATGAAATCTCACATCGACGCCATATCCCAGATA
Found at i:61006795 original size:31 final size:30
Alignment explanation
Indices: 61006750--61006833 Score: 114
Period size: 31 Copynumber: 2.7 Consensus size: 30
61006740 TTAGTCTTGA
* *
61006750 CATATACTAGGCCGAAGCTTTTTCATAAAT
1 CATATACTGGGCCGAAGCCTTTTCATAAAT
61006780 CATATAACTGGGCCGAAGCCTTTTCATAAAT
1 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
* *
61006811 CTTATCACTGGGCTGAAGCCTTT
1 CATAT-ACTGGGCCGAAGCCTTT
61006834 ACTATAAACG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (30 bp):
CATATACTGGGCCGAAGCCTTTTCATAAAT
Found at i:61006907 original size:42 final size:42
Alignment explanation
Indices: 61006855--61006990 Score: 227
Period size: 42 Copynumber: 3.2 Consensus size: 42
61006845 TATGGCCCTT
* * * *
61006855 AAGCCTATTTCAATATCATATGTAATGTCAACGGATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
61006897 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
*
61006939 AAGCCCATTTCAATATTACATGTAATGTCAATGAATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
61006981 AAGCCCATTT
1 AAGCCCATTT
61006991 GGGGAGACTA
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (42 bp):
AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
Found at i:61008058 original size:26 final size:28
Alignment explanation
Indices: 61008014--61008065 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
61008004 TACAAGGGTA
61008014 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTACCCTATTAGGGGCT
**
61008041 TTACGGTCTTTTTA-CCTATTAGGGG
1 TTACGGTCACTTTACCCTATTAGGGG
61008066 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (28 bp):
TTACGGTCACTTTACCCTATTAGGGGCT
Found at i:61008202 original size:27 final size:27
Alignment explanation
Indices: 61008146--61008295 Score: 82
Period size: 27 Copynumber: 5.5 Consensus size: 27
61008136 TAAACCAATA
* * *
61008146 GTATTTTTATAATTTTTGAAAGTC-GAGG
1 GTATTTCTGTAATTTTT-AAAATCAG-GG
61008174 GTATTTCTGTAATTTTTAAAATCAGGG
1 GTATTTCTGTAATTTTTAAAATCAGGG
*
61008201 GTATTT-TGGTAA-TTTTACAAAT-TGAGG
1 GTATTTCT-GTAATTTTTA-AAATCAG-GG
* * *
61008228 GTATTTCGGTAA-TTTCACAAA-CTAGTG
1 GTATTTCTGTAATTTTTA-AAATC-AGGG
* *
61008255 GTATTTCGGTAATTTTATAAACT-AGGG
1 GTATTTCTGTAATTTT-TAAAATCAGGG
61008282 GTATTT-TGGTAATT
1 GTATTTCT-GTAATT
61008296 CTATCCTACA
Statistics
Matches: 99, Mismatches: 12, Indels: 23
0.74 0.09 0.17
Matches are distributed among these distances:
26 7 0.07
27 69 0.70
28 22 0.22
29 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.44
Consensus pattern (27 bp):
GTATTTCTGTAATTTTTAAAATCAGGG
Found at i:61008311 original size:81 final size:81
Alignment explanation
Indices: 61008173--61008328 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
61008163 GAAAGTCGAG
* * ** *
61008173 GGTATTTCTGTAATTTTTAAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGT
1 GGTATTTCGGTAATTTTTAAAATCAGGGGTATTTTGGTAATTCTACAAACAGAGGGTATTTCAGT
61008238 AATTTCACAAACTAGT
66 AATTTCACAAACTAGT
* **
61008254 GGTATTTCGGTAATTTTATAAACT-AGGGGTATTTTGGTAATTCTATCCTACAG-GGGTATTTCA
1 GGTATTTCGGTAATTTT-TAAAATCAGGGGTATTTTGGTAATTCTA-CAAACAGAGGGTATTTCA
61008317 GTAATTTCACAA
64 GTAATTTCACAA
61008329 TCGAGGGTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
81 57 0.88
82 8 0.12
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTTAAAATCAGGGGTATTTTGGTAATTCTACAAACAGAGGGTATTTCAGT
AATTTCACAAACTAGT
Found at i:61008312 original size:54 final size:53
Alignment explanation
Indices: 61008170--61008337 Score: 146
Period size: 54 Copynumber: 3.1 Consensus size: 53
61008160 TTTGAAAGTC
* * * *
61008170 GAGGGTATTTCTGTAATTTTTA-AAATCAGGGGTATTTTGGTAATTTTACAAATT
1 GAGGGTATTTCGGTAA-TTTCACAAA-CAGGGGTATTTCGGTAATTTTACAAATA
* *
61008224 GAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTCGGTAATTTTATAAACTA
1 GAGGGTATTTCGGTAATTTCACAAAC-AGGGGTATTTCGGTAATTTTACAAA-TA
* ** * * *
61008279 G-GGGTATTTTGGTAA-TTCTATCCTACAGGGGTATTTCAGTAATTTCAC-AATC
1 GAGGGTATTTCGGTAATTTC-A-CAAACAGGGGTATTTCGGTAATTTTACAAATA
61008331 GAGGGTA
1 GAGGGTA
61008338 AAATAATAAT
Statistics
Matches: 94, Mismatches: 14, Indels: 13
0.78 0.12 0.11
Matches are distributed among these distances:
52 2 0.02
53 15 0.16
54 72 0.77
55 5 0.05
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (53 bp):
GAGGGTATTTCGGTAATTTCACAAACAGGGGTATTTCGGTAATTTTACAAATA
Found at i:61008335 original size:27 final size:27
Alignment explanation
Indices: 61008168--61008335 Score: 105
Period size: 27 Copynumber: 6.3 Consensus size: 27
61008158 TTTTTGAAAG
* * *
61008168 TCGA-GGGTATTTCTGTAATTTTTAAAA
1 TCGAGGGGTATTTCGGTAA-TTTCACAA
* *
61008195 TC-AGGGGTATTTTGGTAATTTTACAAA
1 TCGAGGGGTATTTCGGTAATTTCAC-AA
*
61008222 TTGA-GGGTATTTCGGTAATTTCACAA
1 TCGAGGGGTATTTCGGTAATTTCACAA
* * * * *
61008248 ACTAGTGGTATTTCGGTAATTTTATAA
1 TCGAGGGGTATTTCGGTAATTTCACAA
* * * *
61008275 ACTAGGGGTATTTTGGTAA-TTCTATC-C
1 TCGAGGGGTATTTCGGTAATTTC-A-CAA
*
61008302 TAC-AGGGGTATTTCAGTAATTTCACAA
1 T-CGAGGGGTATTTCGGTAATTTCACAA
61008329 TCGAGGG
1 TCGAGGG
61008336 TAAAATAATA
Statistics
Matches: 110, Mismatches: 21, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
26 13 0.12
27 92 0.84
28 5 0.05
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (27 bp):
TCGAGGGGTATTTCGGTAATTTCACAA
Found at i:61008457 original size:27 final size:27
Alignment explanation
Indices: 61008327--61008472 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
61008317 GTAATTTCAC
** * *
61008327 AATCGAGGGTAAAATAATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
61008354 AA-CTGAGGGTAAGATGGTAATTCTATA
1 AATC-GAGGGTAAAATGGTAATTCTATA
*
61008381 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
61008408 AATCGAGAGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
**
61008435 AATCGAGGGTAAAATGGTAATTCTGCA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
61008462 AATCAAGGGTA
1 AATCGAGGGTA
61008473 TTTCAGTAAT
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 98 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:61010770 original size:31 final size:31
Alignment explanation
Indices: 61010714--61010826 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
61010704 TTAGTCTTGA
61010714 CATAT-ACT-GGCCGAAGCC-TTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
61010742 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
61010773 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
61010804 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
61010827 ACTGTAAATG
Statistics
Matches: 82, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
28 5 0.06
29 3 0.04
30 10 0.12
31 64 0.78
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:61010949 original size:82 final size:84
Alignment explanation
Indices: 61010850--61011023 Score: 325
Period size: 82 Copynumber: 2.1 Consensus size: 84
61010840 TGGCCCTTAG
*
61010850 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAG-CCATTTCAATATCA-ATGTAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCCATTTCAATATCACATGTAA
61010913 TGTCAATGAATGTATGCAA
66 TGTCAATGAATGTATGCAA
61010932 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCCATTTCAATATCACATGTAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCCATTTCAATATCACATGTAA
61010997 TGTCAATGAATGTATGCAA
66 TGTCAATGAATGTATGCAA
61011016 GCCCATTT
1 GCCCATTT
61011024 GGGGAGACTA
Statistics
Matches: 89, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
82 42 0.47
83 14 0.16
84 33 0.37
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (84 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCCATTTCAATATCACATGTAA
TGTCAATGAATGTATGCAA
Found at i:61010962 original size:42 final size:42
Alignment explanation
Indices: 61010850--61011023 Score: 325
Period size: 42 Copynumber: 4.2 Consensus size: 42
61010840 TGGCCCTTAG
*
61010850 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
61010892 G-CCATTTCAATATCA-ATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
61010932 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
61010974 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
61011016 GCCCATTT
1 GCCCATTT
61011024 GGGGAGACTA
Statistics
Matches: 129, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
40 25 0.19
41 28 0.22
42 76 0.59
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:61011199 original size:25 final size:25
Alignment explanation
Indices: 61011171--61011240 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
61011161 CTCTTTTAAT
61011171 AACTGGGGCAAAGCCC-TTTCTGGTA
1 AACTGGGGCAAAGCCCTTTTC-GGTA
61011196 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* * *
61011221 AACTAGGGCAGATCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
61011241 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:61012080 original size:27 final size:26
Alignment explanation
Indices: 61012050--61012127 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 26
61012040 GGGCATATTC
61012050 GTCATTTTACCATATAAGGGTATTACG
1 GTCATTTTACC-TATAAGGGTATTACG
* * *
61012077 GTCACTTTACCGTACAGAGGCT-TTACG
1 GTCATTTTACC-TATA-AGGGTATTACG
* *
61012104 GTCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-TAAGGGTATT
61012128 TTAGTCATTT
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
26 5 0.13
27 30 0.77
28 4 0.10
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTATAAGGGTATTACG
Found at i:61012198 original size:27 final size:27
Alignment explanation
Indices: 61012145--61012380 Score: 181
Period size: 27 Copynumber: 8.7 Consensus size: 27
61012135 TTTCATCCTA
* * *
61012145 CAAGGGTGTTTTGGTAAATATACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
** **
61012172 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
61012199 CAATGGTATTTCT-ATAATATTTAGAAAGT
1 CAAGGGTATTT-TGGTAAT-TTTACAAA-C
* ** ** *
61012228 CGAGGGTATTTTTATAATTTTTTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
61012255 C-AGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** *
61012281 TGAGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
61012308 C-AGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
* *
61012335 TAAGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
61012362 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
61012381 CTATCCTACA
Statistics
Matches: 171, Mismatches: 31, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
26 23 0.13
27 119 0.70
28 15 0.09
29 14 0.08
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:61012329 original size:54 final size:54
Alignment explanation
Indices: 61012174--61012380 Score: 209
Period size: 54 Copynumber: 3.8 Consensus size: 54
61012164 ATACAAACCA
** * * ** * *
61012174 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATATTTAGAAAGTCG
1 AGGGTATTTTGGTAATTTTATAAACCAGTGGTATTTCGGTAAT-TTTACAAA-TTG
** * * *
61012230 AGGGTATTTTTATAATTTTTTAAATCAG-GGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTATAAACCAGTGGTATTTCGGTAATTTTACAAATTG
* * * *
61012283 AGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTCGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTATAAACCAGTGGTATTTCGGTAATTTTACAAATTG
* * *
61012337 AGGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATT
1 AGGGTATTTTGGTAATTTTATAAACCAGTGGTATTTCGGTAATT
61012381 CTATCCTACA
Statistics
Matches: 125, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 24 0.19
54 68 0.54
55 11 0.09
56 22 0.18
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTATAAACCAGTGGTATTTCGGTAATTTTACAAATTG
Found at i:61012397 original size:81 final size:81
Alignment explanation
Indices: 61012256--61012413 Score: 205
Period size: 81 Copynumber: 2.0 Consensus size: 81
61012246 TTTTTAAATC
* * *
61012256 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTCG
1 AGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTCA
*
61012321 GTAATTTTACAAACTA
66 GTAATTTCACAAACTA
* **
61012337 AGGGTATTTTGGTAATTTTATAAACTAG-GGGTATTTTGGTAA-TTCTATCCTA-CAGGGGTATT
1 AGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTTGGTAATTTC-A-CAAACCAGGGGTATT
61012399 TCAGTAATTTCACAA
63 TCAGTAATTTCACAA
61012414 TCGAAGGTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
80 3 0.04
81 60 0.90
82 4 0.06
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTCA
GTAATTTCACAAACTA
Found at i:61012452 original size:27 final size:27
Alignment explanation
Indices: 61012412--61012570 Score: 210
Period size: 27 Copynumber: 5.9 Consensus size: 27
61012402 GTAATTTCAC
* *
61012412 AATCGAAGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
61012439 AATTGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
61012466 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
61012493 AATCGAGGGTAAAACTGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
61012520 AATCGTGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
61012547 AATCGAGGGTAAAATGGTAATTCT
1 AATCGAGGGTAAAACGGTAATTCT
61012571 ACAAATGAGG
Statistics
Matches: 114, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:61012520 original size:81 final size:81
Alignment explanation
Indices: 61012412--61012581 Score: 261
Period size: 81 Copynumber: 2.1 Consensus size: 81
61012402 GTAATTTCAC
* * * *
61012412 AATCGAAGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
*
61012477 AAATGGTAATTCTATA
66 AAATGGTAATTCTACA
* * *
61012493 AATCGAGGGTAAAACTGTAATTTTGTAAATCGTGGGTGAAACGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
61012558 AAATGGTAATTCTACA
66 AAATGGTAATTCTACA
61012574 AAT-GAGGG
1 AATCGAGGG
61012582 CATTTCAGTA
Statistics
Matches: 81, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 5 0.06
81 76 0.94
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
AAATGGTAATTCTACA
Found at i:61017648 original size:84 final size:84
Alignment explanation
Indices: 61017499--61017653 Score: 211
Period size: 84 Copynumber: 1.8 Consensus size: 84
61017489 TAAGATGCCA
* ** * * * *
61017499 ACGCCATGTCCCAGACGTGGTCTTACATGGGATCTCACATTAATGCCATGTCCCATATATAGTCT
1 ACGCCATGTCCCAGACGTGATCTTACATGAAATCTCACATCAACGCCATATCCCAGATATAGTCT
61017564 TATACGAATTCTCATTTCG
66 TATACGAATTCTCATTTCG
* ** *
61017583 ACGCCATGTCTCAGACGTGATCTTACATGAAATCTCATGTCAACGCCATATCCCAGATATGGTCT
1 ACGCCATGTCCCAGACGTGATCTTACATGAAATCTCACATCAACGCCATATCCCAGATATAGTCT
61017648 TATACG
66 TATACG
61017654 GGATCTTATC
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
84 60 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (84 bp):
ACGCCATGTCCCAGACGTGATCTTACATGAAATCTCACATCAACGCCATATCCCAGATATAGTCT
TATACGAATTCTCATTTCG
Found at i:61017649 original size:42 final size:42
Alignment explanation
Indices: 61017497--61017649 Score: 126
Period size: 42 Copynumber: 3.6 Consensus size: 42
61017487 AATAAGATGC
* ** *
61017497 CAACGCCATGTCCCAGACGTGGTCTTACATGGGATCTCACAT
1 CAACGCCATGTCCCAGACATGGTCTTACATGAAATCTCATAT
* * * * * * * * *
61017539 TAATGCCATGTCCCATATATAGTCTTATACGAATTCTCATTT
1 CAACGCCATGTCCCAGACATGGTCTTACATGAAATCTCATAT
* * * * *
61017581 CGACGCCATGTCTCAGACGTGATCTTACATGAAATCTCATGT
1 CAACGCCATGTCCCAGACATGGTCTTACATGAAATCTCATAT
* *
61017623 CAACGCCATATCCCAGATATGGTCTTA
1 CAACGCCATGTCCCAGACATGGTCTTA
61017650 TACGGGATCT
Statistics
Matches: 79, Mismatches: 32, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
42 79 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (42 bp):
CAACGCCATGTCCCAGACATGGTCTTACATGAAATCTCATAT
Found at i:61019834 original size:44 final size:44
Alignment explanation
Indices: 61019786--61019876 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
61019776 TGGCATTCAC
61019786 TTCCAAAGATAACATTTCTGATGTATCTAGTAAGGAGTCTAAAG
1 TTCCAAAGATAACATTTCTGATGTATCTAGTAAGGAGTCTAAAG
61019830 TTCCAAAGATAACATTTCTGATGTATCTAGTAAGGAGTCTAAAG
1 TTCCAAAGATAACATTTCTGATGTATCTAGTAAGGAGTCTAAAG
61019874 TTC
1 TTC
61019877 AATTGGGGGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (44 bp):
TTCCAAAGATAACATTTCTGATGTATCTAGTAAGGAGTCTAAAG
Found at i:61025294 original size:21 final size:22
Alignment explanation
Indices: 61025270--61025315 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
61025260 TTATTCAATA
* *
61025270 AAAATTATAA-AAACTAAAATT
1 AAAATAATAATAAACGAAAATT
*
61025291 AAAATAATAATAAAGGAAAATT
1 AAAATAATAATAAACGAAAATT
61025313 AAA
1 AAA
61025316 TAAAAAGTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (22 bp):
AAAATAATAATAAACGAAAATT
Found at i:61035333 original size:7 final size:6
Alignment explanation
Indices: 61035316--61035387 Score: 54
Period size: 7 Copynumber: 10.7 Consensus size: 6
61035306 CTAAAAATAC
**
61035316 TAAAAA TAAAAA TAAAAA TAAAAAA TAAAAA GTAGTTTTAA TAAAAA TTAAAAA
1 TAAAAA TAAAAA TAAAAA T-AAAAA TAAAAA -TA---AAAA TAAAAA -TAAAAA
61035370 TATAAAA TAATAAA TAAA
1 TA-AAAA TAA-AAA TAAA
61035388 TATTTTTAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
6 24 0.44
7 26 0.48
9 2 0.04
10 2 0.04
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (6 bp):
TAAAAA
Found at i:61035384 original size:14 final size:13
Alignment explanation
Indices: 61035290--61035387 Score: 63
Period size: 13 Copynumber: 7.0 Consensus size: 13
61035280 CGAAATTGAT
61035290 AATTAAAAATAAA
1 AATTAAAAATAAA
*
61035303 ATTCTAAAAATACTAA
1 AAT-TAAAAATA--AA
*
61035319 AAATAAAAATAAA
1 AATTAAAAATAAA
*
61035332 AATAAAAAATAAA
1 AATTAAAAATAAA
***
61035345 AAGTAGTTTTAATAAA
1 AA-T--TAAAAATAAA
61035361 AATTAAAAATATAA
1 AATTAAAAATA-AA
61035375 AA-TAATAAATAAA
1 AATTAA-AAATAAA
61035388 TATTTTTAAA
Statistics
Matches: 65, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
13 27 0.42
14 18 0.28
15 9 0.14
16 11 0.17
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (13 bp):
AATTAAAAATAAA
Found at i:61036146 original size:18 final size:18
Alignment explanation
Indices: 61036120--61036160 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
61036110 GTAGGGTGGT
*
61036120 TGTTGGTAGCCTGGAGGA
1 TGTTGGTAGCCCGGAGGA
*
61036138 TGTTTGTAGCCCGGAGGA
1 TGTTGGTAGCCCGGAGGA
61036156 TGTTG
1 TGTTG
61036161 TGGTCTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.15, C:0.12, G:0.41, T:0.32
Consensus pattern (18 bp):
TGTTGGTAGCCCGGAGGA
Found at i:61049310 original size:29 final size:29
Alignment explanation
Indices: 61049247--61049314 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
61049237 TAATCAACCA
*
61049247 CGCACTCTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
61049276 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
61049305 CGCACACTTA
1 CGCACACTTA
61049315 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Done.