Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 187 of 253
Found at i:61049457 original size:29 final size:30
Alignment explanation
Indices: 61049416--61049494 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
61049406 CTTAATAATC
61049416 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
* *
61049446 AACTCTCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
61049475 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
61049495 ATCTCATGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 31 0.76
30 4 0.10
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:61057453 original size:29 final size:29
Alignment explanation
Indices: 61057390--61057457 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
61057380 TAATCAACCA
61057390 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
61057419 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
61057448 CGCACACTTA
1 CGCACACTTA
61057458 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:61057598 original size:29 final size:30
Alignment explanation
Indices: 61057559--61057637 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
61057549 CTTAATAATC
*
61057559 AACCGCGCACACTTAGTGCCATGT-ACTTTA
1 AACC-CGCACACTTAGTGCCATGTAAATTTA
*
61057589 AACTCGCACACTTAGTG-C-TGTAGAATTTA
1 AACCCGCACACTTAGTGCCATGTA-AATTTA
61057618 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
61057638 ATCTCATGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 3 0.07
28 1 0.02
29 34 0.81
30 4 0.10
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTAAATTTA
Found at i:61074066 original size:40 final size:40
Alignment explanation
Indices: 61073959--61074175 Score: 203
Period size: 40 Copynumber: 5.5 Consensus size: 40
61073949 CGGATGATAA
* * * * *
61073959 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATA-T
* * *
61073999 TCGGGCTAA-GCCCGAAGGCAATT-GTGCGAGTTATTATAC
1 CCGGGCTAATTCCCGAAGGC-ATTCGTGCGAGTTATTATAT
* *
61074038 CCGGGCTAATTCTCGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATAT
* * *
61074078 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATAT
* *
61074118 CCGGGCT-ATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAT-TCCCGAAGGCATTCGTGCGAGTTA-TTATAT
* *
61074158 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAATTCCCGAAGG
61074176 TACTTGGCTT
Statistics
Matches: 149, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 45 0.30
40 104 0.70
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATAT
Found at i:61074125 original size:80 final size:79
Alignment explanation
Indices: 61073959--61074149 Score: 235
Period size: 80 Copynumber: 2.4 Consensus size: 79
61073949 CGGATGATAA
* * * *
61073959 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAAGCCCGAAGGCAATTGT
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGT
*
61074024 GCGAGTTATTATAC
66 GCGAGTTACTATAC
* * *
61074038 CCGGGCTAATTCTCGAAGGCATTCGTGCGAGTTA-TTATGTCCGGGCTAAGTCCCGAAGGC-ATT
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCAATT
*
61074101 GGTGCGAGTTACTATAT
64 -GTGCGAGTTACTATAC
*
61074118 CCGGGCT-ATGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAT-TCCCGAAGGCATTCGTGCGAGT
61074150 AGCTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.03
79 44 0.45
80 50 0.52
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGT
GCGAGTTACTATAC
Found at i:61074161 original size:80 final size:80
Alignment explanation
Indices: 61073959--61074175 Score: 232
Period size: 79 Copynumber: 2.7 Consensus size: 80
61073949 CGGATGATAA
* * * *
61073959 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTTCGGGCTAAG-CCCGAAGGCAAT
1 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGGCAAT
*
61074021 TGTGCGAGTTATTATAC
64 TGTGCGAGTTACTATAC
* * *
61074038 CCGGGCTAAT-TCTCGAAGGCATTCGTGCGAGTTA-TTATGTCCGGGCTAAGTCCCGAAGGC-AT
1 CCGGGCT-ATGTCCCGAAGGCATTCGTGCGAG-TAGCTATATCCGGGCTAAGTCCCGAAGGCAAT
*
61074100 TGGTGCGAGTTACTATAT
64 T-GTGCGAGTTACTATAC
* * *
61074118 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGG
61074176 TACTTGGCTT
Statistics
Matches: 115, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
79 58 0.50
80 57 0.50
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGGCAATTG
TGCGAGTTACTATAC
Found at i:61074174 original size:119 final size:119
Alignment explanation
Indices: 61073959--61074175 Score: 271
Period size: 119 Copynumber: 1.8 Consensus size: 119
61073949 CGGATGATAA
* * * *
61073959 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAAGCCCGAAGGCAATTGT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGA
* * *
61074024 GCGAGTTATTATACCCGGGCTAATTCTCGAAGGCATTCGTGCGAGTTATTATGT
66 GCGAGTTACTATACCCGGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGT
* *
61074078 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATATCCGGGCTATGTCCCGAAGGC-ATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCAATT
* *
61074141 CGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
64 -GAGCGAGTTA-CTATACCCGGGCTAAATCCCGAAGG
61074176 TACTTGGCTT
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
118 2 0.02
119 60 0.72
120 21 0.25
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGA
GCGAGTTACTATACCCGGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGT
Found at i:61075885 original size:13 final size:13
Alignment explanation
Indices: 61075863--61075895 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
61075853 AAGGTTTTGT
61075863 TTAT-TAAACTAA
1 TTATCTAAACTAA
61075875 TTATCTAAACTAA
1 TTATCTAAACTAA
*
61075888 TTAACTAA
1 TTATCTAA
61075896 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:61078801 original size:18 final size:17
Alignment explanation
Indices: 61078768--61078870 Score: 87
Period size: 18 Copynumber: 6.3 Consensus size: 17
61078758 TCAAAATAAG
61078768 AAAATTAAAATGAAAAT
1 AAAATTAAAATGAAAAT
61078785 AAAATTCAAAA-GAAAAAT
1 AAAATT-AAAATG-AAAAT
61078803 AAGAA-TAAAAT--AAAT
1 AA-AATTAAAATGAAAAT
61078818 AAAA-T-AAAT-AAAAT
1 AAAATTAAAATGAAAAT
*
61078832 AAAA-TAAAATAAAAAT
1 AAAATTAAAATGAAAAT
* *
61078848 AAAAATAAAAATAAAAAT
1 -AAAATTAAAATGAAAAT
61078866 AAAAT
1 AAAAT
61078871 AGGAGGATTC
Statistics
Matches: 76, Mismatches: 1, Indels: 18
0.80 0.01 0.19
Matches are distributed among these distances:
13 4 0.05
14 12 0.16
15 10 0.13
16 5 0.07
17 20 0.26
18 23 0.30
19 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.19
Consensus pattern (17 bp):
AAAATTAAAATGAAAAT
Found at i:61078801 original size:24 final size:21
Alignment explanation
Indices: 61078760--61078871 Score: 98
Period size: 23 Copynumber: 4.8 Consensus size: 21
61078750 TATGTCTTTC
61078760 AAAATAAGAAAATTAAAATGAAAAT
1 AAAATAA-AAAA--AAAAT-AAAAT
*
61078785 AAAATTCAAAAGAAAAATAAGAAT
1 AAAA-T-AAAAAAAAAATAA-AAT
61078809 AAAATAAATAAAATAAATAAAAT
1 AAAATAAA-AAAA-AAATAAAAT
*
61078832 AAAATAAAATAAAAATAAAAAT
1 AAAATAAAAAAAAAAT-AAAAT
*
61078854 AAAAATAAAAATAAAATA
1 -AAAATAAAAAAAAAATA
61078872 GGAGGATTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 17
0.77 0.05 0.18
Matches are distributed among these distances:
21 4 0.05
22 12 0.16
23 31 0.41
24 18 0.24
25 4 0.05
26 4 0.05
27 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.19
Consensus pattern (21 bp):
AAAATAAAAAAAAAATAAAAT
Found at i:61078818 original size:9 final size:9
Alignment explanation
Indices: 61078806--61078862 Score: 73
Period size: 9 Copynumber: 6.2 Consensus size: 9
61078796 GAAAAATAAG
61078806 AATAAAATA
1 AATAAAATA
61078815 AATAAAATA
1 AATAAAATA
61078824 AATAAAATAA
1 AATAAAAT-A
61078834 AATAAAATA
1 AATAAAATA
61078843 AA-AATAA-A
1 AATAA-AATA
61078851 AATAAAAATA
1 AAT-AAAATA
61078861 AA
1 AA
61078863 AATAAAATAG
Statistics
Matches: 43, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
8 5 0.12
9 24 0.56
10 14 0.33
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AATAAAATA
Found at i:61078819 original size:4 final size:5
Alignment explanation
Indices: 61078760--61078871 Score: 95
Period size: 5 Copynumber: 21.2 Consensus size: 5
61078750 TATGTCTTTC
* * *
61078760 AAAAT AAGA- AAATT AAAAT GAAAAT AAAATT CAAAAGA AAAAT AAGAAT
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAA-T -AAAA-T AAAAT AA-AAT
61078809 AAAAT -AAAT AAAAT -AAAT AAAAT AAAAT AAAAT AAAAAT AAAAAT AAAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT -AAAAT
61078860 AAAAAT AAAAT A
1 -AAAAT AAAAT A
61078872 GGAGGATTCA
Statistics
Matches: 92, Mismatches: 7, Indels: 16
0.80 0.06 0.14
Matches are distributed among these distances:
4 10 0.11
5 40 0.43
6 38 0.41
7 4 0.04
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:61082927 original size:13 final size:13
Alignment explanation
Indices: 61082905--61082937 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
61082895 AAGGGTTTGT
61082905 TTAT-TAAACTAA
1 TTATCTAAACTAA
61082917 TTATCTAAACTAA
1 TTATCTAAACTAA
*
61082930 TTAACTAA
1 TTATCTAA
61082938 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:61084425 original size:14 final size:13
Alignment explanation
Indices: 61084405--61084436 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
61084395 AATATTTAAC
61084405 TTGTTCTTAATTA
1 TTGTTCTTAATTA
61084418 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
61084432 TTGTT
1 TTGTT
61084437 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:61093608 original size:23 final size:23
Alignment explanation
Indices: 61093574--61093632 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
61093564 CGGGTACGGG
61093574 ACACGGGCGTGTGCTCTATATCC
1 ACACGGGCGTGTGCTCTATATCC
*
61093597 ACATGGGCGTGTGCTCTATATCC
1 ACACGGGCGTGTGCTCTATATCC
61093620 ACACGGGCGTGTG
1 ACACGGGCGTGTG
61093633 GAGCCTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (23 bp):
ACACGGGCGTGTGCTCTATATCC
Found at i:61095813 original size:43 final size:43
Alignment explanation
Indices: 61095688--61095837 Score: 148
Period size: 43 Copynumber: 3.5 Consensus size: 43
61095678 CGAAAAGCTC
* * **
61095688 ATACAATGCCAATGTCCTAGACGTGTTCTTACATGT-AATCAA
1 ATACAATGCCAATGTCCCAGACGTGATCTTACACATAAATCAA
* *
61095730 ATATCAATGCCACTGTCCCAGGCAG-GATCTTACACA-AAATCAA
1 ATA-CAATGCCAATGTCCCAGAC-GTGATCTTACACATAAATCAA
61095773 ATACAATGCCAATGTCCCAGACGTTG-TCTTACACATAAATCATA
1 ATACAATGCCAATGTCCCAGACG-TGATCTTACACATAAATCA-A
* *
61095817 AGT-CGATGCCAACGTCCCAGA
1 A-TACAATGCCAATGTCCCAGA
61095838 TATGGTCTTA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 29 0.32
43 40 0.44
44 19 0.21
45 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACGTGATCTTACACATAAATCAA
Found at i:61101230 original size:79 final size:81
Alignment explanation
Indices: 61101121--61101303 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
61101111 TACTCGTTCA
* *
61101121 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGCA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGG-ATCTTAACCCGG
* *
61101184 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
61101201 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
61101264 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
61101280 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
61101304 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.67
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:61101303 original size:40 final size:40
Alignment explanation
Indices: 61101100--61101303 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
61101090 CGGAATTTAA
** *
61101100 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
61101140 CCGGTTATAGTAACTCGCACAAATGCCTTCGGCACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
61101180 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
61101219 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
61101259 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
61101299 CCGGA
1 CCGGA
61101304 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:61109327 original size:39 final size:40
Alignment explanation
Indices: 61109202--61109382 Score: 190
Period size: 40 Copynumber: 4.5 Consensus size: 40
61109192 GCTACTCATT
*
61109202 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
61109242 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
61109282 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * * *
61109321 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGAA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
61109362 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
61109383 TGGACATCAT
Statistics
Matches: 117, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 72 0.62
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:61112799 original size:43 final size:42
Alignment explanation
Indices: 61112732--61112885 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 42
61112722 TCGTACAATG
* * *
61112732 CCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATTGATA
1 CCAATGTCCCAGAAGTGGTCTTACATGTAATCAAATA-CGATA
* * * *
61112775 CCACTGTCCCAGACAG-GGTTTTACATGAAATCAAATACGATG
1 CCAATGTCCCAGA-AGTGGTCTTACATGTAATCAAATACGATA
* * *
61112817 CCAATGTCCCAGATGTGGTCTTACATGTAAGTCATAAGT-CAATG
1 CCAATGTCCCAGAAGTGGTCTTACATGTAA-TCA-AA-TACGATA
* *
61112861 CCAACGTCCCAGACGTGGTCTTACA
1 CCAATGTCCCAGAAGTGGTCTTACA
61112886 CGATAACACA
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 33 0.36
44 30 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
CCAATGTCCCAGAAGTGGTCTTACATGTAATCAAATACGATA
Found at i:61120259 original size:22 final size:22
Alignment explanation
Indices: 61120229--61120281 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
61120219 TTACACAACT
61120229 CACACGGCCTGGCCATTGAACC
1 CACACGGCCTGGCCATTGAACC
* *
61120251 CACATGGCCTGGCCATTGAGCC
1 CACACGGCCTGGCCATTGAACC
61120273 CACACGGCC
1 CACACGGCC
61120282 GTCGCAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.21, C:0.42, G:0.25, T:0.13
Consensus pattern (22 bp):
CACACGGCCTGGCCATTGAACC
Found at i:61125067 original size:20 final size:21
Alignment explanation
Indices: 61125042--61125089 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
61125032 CCTCTTCGCG
61125042 TCACACGCCCGTGC-TCGCCA
1 TCACACGCCCGTGCATCGCCA
*
61125062 TCACACGCCTGTGCATCGCCA
1 TCACACGCCCGTGCATCGCCA
*
61125083 CCACACG
1 TCACACG
61125090 GCCTGGCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.19, C:0.48, G:0.19, T:0.15
Consensus pattern (21 bp):
TCACACGCCCGTGCATCGCCA
Found at i:61126022 original size:13 final size:13
Alignment explanation
Indices: 61126001--61126033 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
61125991 TTTGATGAAA
*
61126001 TTAGTTAATTAGT
1 TTAGATAATTAGT
61126014 TTAGATAATTAGT
1 TTAGATAATTAGT
61126027 TTA-ATAA
1 TTAGATAA
61126034 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:61130998 original size:41 final size:41
Alignment explanation
Indices: 61130933--61131048 Score: 128
Period size: 41 Copynumber: 2.8 Consensus size: 41
61130923 ATTCGGAATG
* *
61130933 GCTTCGGCTATATATGGCAATTAGTGTGAGAGACCA-AGATA
1 GCTTCGGCTATATAAGGCACTTAGTGTGAGAGACCATA-ATA
* **
61130974 GCTTCGGCTATGTAAGGCACTTAGTGTGCA-AGATTATAATA
1 GCTTCGGCTATATAAGGCACTTAGTGTG-AGAGACCATAATA
* *
61131015 GCTTCGGCTATATATAGGAACTTAGTGTGTGAGA
1 GCTTCGGCTATATA-AGGCACTTAGTGTGAGAGA
61131049 TATTGAGTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
41 45 0.71
42 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (41 bp):
GCTTCGGCTATATAAGGCACTTAGTGTGAGAGACCATAATA
Found at i:61133815 original size:57 final size:57
Alignment explanation
Indices: 61133727--61133843 Score: 234
Period size: 57 Copynumber: 2.1 Consensus size: 57
61133717 AAAATGCTCA
61133727 TATCAAAATAATGTCATGGCAAAATATTGTCTAATCAACTGCTCAAAGAGTTACTAC
1 TATCAAAATAATGTCATGGCAAAATATTGTCTAATCAACTGCTCAAAGAGTTACTAC
61133784 TATCAAAATAATGTCATGGCAAAATATTGTCTAATCAACTGCTCAAAGAGTTACTAC
1 TATCAAAATAATGTCATGGCAAAATATTGTCTAATCAACTGCTCAAAGAGTTACTAC
61133841 TAT
1 TAT
61133844 AACCTGCCTC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (57 bp):
TATCAAAATAATGTCATGGCAAAATATTGTCTAATCAACTGCTCAAAGAGTTACTAC
Found at i:61136602 original size:41 final size:42
Alignment explanation
Indices: 61136543--61136653 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 42
61136533 GTATGTGTTA
*
61136543 TCGTGTAAGACCACGTCTGGGACGTTGCATCG-TATTTGATT
1 TCGTGTAAGACCATGTCTGGGACGTTGCATCGATATTTGATT
* *
61136584 TCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGATT
1 TCGTGTAAGACCATGTCTGGGAC-GTTGCATCGATATTTGATT
* * * *
61136627 ACATGTAAGACCATATCTTGGACGTTG
1 TCGTGTAAGACCATGTCTGGGACGTTG
61136654 GCATTTTACG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
41 21 0.36
42 11 0.19
43 27 0.46
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACGTTGCATCGATATTTGATT
Found at i:61149215 original size:43 final size:43
Alignment explanation
Indices: 61149162--61149270 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 43
61149152 CAGTGTATTG
* * *
61149162 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATC-ATTATA
1 TGATAACGTGTAAGACCATATCTAGGACAGTGGCATCGA-TATA
* * *
61149205 TGATATCGTGTAAGACCCTATCTAGGACAGTGGCATCGATATG
1 TGATAACGTGTAAGACCATATCTAGGACAGTGGCATCGATATA
*
61149248 TGATAACATGTAAGACCATATCT
1 TGATAACGTGTAAGACCATATCT
61149271 GGGATATGGC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 55 0.98
44 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (43 bp):
TGATAACGTGTAAGACCATATCTAGGACAGTGGCATCGATATA
Found at i:61152161 original size:16 final size:16
Alignment explanation
Indices: 61152140--61152171 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
61152130 GTTGTAACGC
61152140 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
*
61152156 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
61152172 TCTCAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:61153350 original size:16 final size:16
Alignment explanation
Indices: 61153326--61153360 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
61153316 TTAGATCGGT
*
61153326 AAATCCTGAAATGTCA
1 AAATCCTGAAAAGTCA
*
61153342 AAATGCTGAAAAGTCA
1 AAATCCTGAAAAGTCA
61153358 AAA
1 AAA
61153361 GTTTGGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.14, T:0.20
Consensus pattern (16 bp):
AAATCCTGAAAAGTCA
Found at i:61153686 original size:29 final size:29
Alignment explanation
Indices: 61153571--61153688 Score: 164
Period size: 29 Copynumber: 4.1 Consensus size: 29
61153561 GTGAGCATGA
* *
61153571 ATATAAATTTGATTTGGGCCTAAATGGTC
1 ATATAAATGTGATTTGGGCCTAAAGGGTC
* *
61153600 ATATAAATGTGATTTGGGCCTACAGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGTC
*
61153629 ATATAAATGTGATTTGGGCCTAAAAGGTC
1 ATATAAATGTGATTTGGGCCTAAAGGGTC
* * *
61153658 ATATAAATGTAATTTGGGCCTGAGGGGTC
1 ATATAAATGTGATTTGGGCCTAAAGGGTC
61153687 AT
1 AT
61153689 GTGAATATAA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 78 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAAAGGGTC
Found at i:61158237 original size:29 final size:29
Alignment explanation
Indices: 61158151--61158230 Score: 133
Period size: 29 Copynumber: 2.8 Consensus size: 29
61158141 GTGAGCATGA
* *
61158151 ATATAAAAGTGGTTTGGGCCTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
*
61158180 ATATAAATGTGATTTTGGCCTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
61158209 ATATAAATGTGATTTGGGCCTA
1 ATATAAATGTGATTTGGGCCTA
61158231 TGGGGCCTTG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAAAGGGCC
Found at i:61165284 original size:21 final size:22
Alignment explanation
Indices: 61165251--61165297 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
61165241 ATATAAATGG
*
61165251 TTTATTTATGA-TTCA-AGTCA
1 TTTATTTAAGATTTCATAGTCA
61165271 TTTATTTTAAGATTTCATAGTCA
1 TTTA-TTTAAGATTTCATAGTCA
61165294 TTTA
1 TTTA
61165298 ACCCTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 6 0.26
22 4 0.17
23 9 0.39
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.53
Consensus pattern (22 bp):
TTTATTTAAGATTTCATAGTCA
Found at i:61180145 original size:47 final size:47
Alignment explanation
Indices: 61180094--61180504 Score: 691
Period size: 47 Copynumber: 8.7 Consensus size: 47
61180084 TTAGGATTCT
* * *
61180094 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
61180141 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
61180188 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
61180235 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
61180282 ATGTGATGAATGTGAAAGTGTATATATAGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATAT-GTGATAAGGCCTAATGGCCG
61180330 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
61180377 ATGTGATGAATGTGAAAGTGTATATA-GTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
61180423 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
61180470 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
61180505 TCCGAAGGGC
Statistics
Matches: 348, Mismatches: 13, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
46 47 0.14
47 254 0.73
48 47 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:61180679 original size:37 final size:37
Alignment explanation
Indices: 61180623--61180701 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
61180613 CCGAGCTCTA
* * *
61180623 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
61180660 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
61180697 AAGAC
1 AAGAC
61180702 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:61182044 original size:79 final size:80
Alignment explanation
Indices: 61181913--61182299 Score: 624
Period size: 79 Copynumber: 4.9 Consensus size: 80
61181903 GAGAATTGAG
61181913 AGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
61181977 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
61181992 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
61182056 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
61182071 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGT--CG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
61182134 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * * *
61182149 AGTGATATATCC-GGTTAAATCCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCC
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
61182213 GAAGAGCATTCGTGCT
65 GAAGAGCATTCGTGCT
* * * * *
61182229 AGTGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
61182293 AAGAGCA
66 AAGAGCA
61182300 ATCATGCTGG
Statistics
Matches: 289, Mismatches: 13, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
77 8 0.03
78 69 0.24
79 139 0.48
80 69 0.24
81 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCT
Found at i:61182153 original size:118 final size:117
Alignment explanation
Indices: 61181913--61182299 Score: 616
Period size: 118 Copynumber: 3.3 Consensus size: 117
61181903 GAGAATTGAG
61181913 AGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
61181977 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCC-GGCTAAGT-CGAAGAGCATTCGTGCT
61182031 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
61182096 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGG-CTAAGTCGAAGAGCATTCGTGCT
* * * * *
61182149 AGTGATATATCC-GGTTAAATCCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCC
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
**
61182213 GAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCGAAGAGCATTCGTGCT
65 GAAGAGCATTCGTGCTAGTGATATATCCG-GCT-AAGTCGAAGAGCATTCGTGCT
* * *
61182268 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
61182300 ATCATGCTGG
Statistics
Matches: 251, Mismatches: 12, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
117 8 0.03
118 125 0.50
119 111 0.44
120 7 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (117 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTGATATATCCGGCTAAGTCGAAGAGCATTCGTGCT
Found at i:61182311 original size:40 final size:40
Alignment explanation
Indices: 61181913--61182299 Score: 624
Period size: 40 Copynumber: 9.8 Consensus size: 40
61181903 GAGAATTGAG
61181913 AGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
61181952 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
61181992 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
61182031 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
61182071 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
61182111 AGTGATATATCCGGACTAAGT--CGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
61182149 AGTGATATATCC-GGTTAAATCCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
* * *
61182189 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
61182229 AGTGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
61182268 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
61182300 ATCATGCTGG
Statistics
Matches: 322, Mismatches: 19, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
37 5 0.02
38 29 0.09
39 97 0.30
40 185 0.57
41 6 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:61186171 original size:47 final size:47
Alignment explanation
Indices: 61186120--61186340 Score: 318
Period size: 47 Copynumber: 4.7 Consensus size: 47
61186110 TTAGGATTCT
* * *
61186120 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
61186167 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
61186214 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
61186261 ATGTGATGAATGTGAAAGTGTATATATGGGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
61186308 ACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATA
61186341 CGTCCCAAAG
Statistics
Matches: 159, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.01
47 158 0.99
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:61186195 original size:25 final size:25
Alignment explanation
Indices: 61186167--61186245 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
61186157 CTAATGGCCG
61186167 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
61186192 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
61186214 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
61186239 ATGTGAT
1 ATGTGAT
61186246 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:61186516 original size:37 final size:37
Alignment explanation
Indices: 61186460--61186538 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
61186450 TCGAGCTCTA
* * *
61186460 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
61186497 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
61186534 AAGAC
1 AAGAC
61186539 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:61189454 original size:14 final size:15
Alignment explanation
Indices: 61189430--61189459 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
61189420 GGATATCAAA
61189430 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
61189445 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
61189459 A
1 A
61189460 AGTCAACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:61198895 original size:46 final size:46
Alignment explanation
Indices: 61198725--61198897 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
61198715 GTTGAGCATA
* *
61198725 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-T
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
* * *
61198770 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--C
*
61198817 CAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
* * *
61198863 CGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61198898 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 27 0.26
46 32 0.30
47 26 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
Found at i:61206308 original size:46 final size:46
Alignment explanation
Indices: 61206258--61206433 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
61206248 TGGTTGAGCA
61206258 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61206304 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61206349 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61206397 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61206434 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61206414 original size:93 final size:93
Alignment explanation
Indices: 61206255--61206426 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61206245 GGATGGTTGA
* *
61206255 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61206320 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61206348 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61206413 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61206427 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61212150 original size:7 final size:7
Alignment explanation
Indices: 61212138--61212172 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
61212128 ATTCTTTTTA
61212138 ATTATAT
1 ATTATAT
61212145 ATTATAT
1 ATTATAT
61212152 ATTATTAT
1 ATTA-TAT
61212160 ATATATAT
1 AT-TATAT
61212168 ATTAT
1 ATTAT
61212173 TTTCTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 14 0.54
8 10 0.38
9 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:61218112 original size:8 final size:8
Alignment explanation
Indices: 61218099--61218154 Score: 53
Period size: 8 Copynumber: 6.8 Consensus size: 8
61218089 TCTATTTCAA
61218099 AAAAAAAG
1 AAAAAAAG
61218107 AAAAAAAG
1 AAAAAAAG
61218115 AAAAGAAA-
1 AAAA-AAAG
61218123 AAGAGAAAA-
1 AA-A-AAAAG
*
61218132 AAATAAAG
1 AAAAAAAG
61218140 AGAAAAAAG
1 A-AAAAAAG
61218149 AAAAAA
1 AAAAAA
61218155 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
7 3 0.07
8 21 0.51
9 16 0.39
10 1 0.02
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (8 bp):
AAAAAAAG
Found at i:61218118 original size:13 final size:13
Alignment explanation
Indices: 61218097--61218145 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
61218087 CTTCTATTTC
61218097 AAAAA-AAAAGAA
1 AAAAAGAAAAGAA
61218109 AAAAAGAAAAGAA
1 AAAAAGAAAAGAA
*
61218122 AAAGAGAAAA-AA
1 AAAAAGAAAAGAA
61218134 ATAAAGAGAAAA
1 A-AAA-AGAAAA
61218146 AAGAAAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 8 0.25
13 18 0.56
14 6 0.19
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (13 bp):
AAAAAGAAAAGAA
Found at i:61218124 original size:14 final size:14
Alignment explanation
Indices: 61218098--61218152 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 14
61218088 TTCTATTTCA
61218098 AAAAAAAAGAAAA-
1 AAAAAAAAGAAAAG
*
61218111 AAAGAAAAGAAAAAG
1 AAAAAAAAG-AAAAG
*
61218126 AGAAAAAAA-TAAAG
1 A-AAAAAAAGAAAAG
*
61218140 AGAAAAAAGAAAA
1 AAAAAAAAGAAAA
61218153 AATGGAGAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
13 14 0.42
14 12 0.36
15 1 0.03
16 6 0.18
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:61218129 original size:21 final size:21
Alignment explanation
Indices: 61218100--61218154 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
61218090 CTATTTCAAA
61218100 AAAAAAGAAAAAAAGAAA-AG
1 AAAAAAGAAAAAAAGAAAGAG
*
61218120 AAAAAGAGAAAAAAATAAAGAG
1 AAAAA-AGAAAAAAAGAAAGAG
61218142 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
61218155 TGGAGAGGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 5 0.16
21 20 0.62
22 7 0.22
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (21 bp):
AAAAAAGAAAAAAAGAAAGAG
Found at i:61218161 original size:20 final size:20
Alignment explanation
Indices: 61218100--61218161 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
61218090 CTATTTCAAA
* *
61218100 AAAAAAGAAAAAAAGAAAAG
1 AAAAAAGAAAAAATGAAGAG
*
61218120 AAAAAGAGAAAAAAATAAAGAG
1 AAAAA-AG-AAAAAATGAAGAG
*
61218142 AAAAAAGAAAAAATGGAGAG
1 AAAAAAGAAAAAATGAAGAG
61218162 GCCAAGGTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 16 0.46
21 4 0.11
22 15 0.43
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.03
Consensus pattern (20 bp):
AAAAAAGAAAAAATGAAGAG
Found at i:61219217 original size:119 final size:119
Alignment explanation
Indices: 61219005--61219236 Score: 412
Period size: 119 Copynumber: 1.9 Consensus size: 119
61218995 AAATTGAAAA
* *
61219005 TAGCAGATCTAACCTTCAGATGTTTATACTGAGGCAGATCCAAGATGATTGGGTATTCTTGTGTT
1 TAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTGGGTATTCTTGTGTT
61219070 TACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATG
66 TACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATG
*
61219124 TAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
1 TAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTGGGTATTCTTGTGTT
*
61219189 TACAAGGAACAAATCGAGGACACT-GCAGATATGACTCTCAAATGTTCT
66 TACAAGGAACAAATCGAGGACA-TAGCAGATATGACTCTCAAAAGTTCT
61219237 TAAACAAACT
Statistics
Matches: 108, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
119 107 0.99
120 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (119 bp):
TAGCAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTGGGTATTCTTGTGTT
TACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATG
Found at i:61219275 original size:83 final size:83
Alignment explanation
Indices: 61219164--61219319 Score: 215
Period size: 83 Copynumber: 1.9 Consensus size: 83
61219154 AAAGCAGATC
* * * *
61219164 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACACT-GCAGATATGACTCTC
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACA-TAGCAGATATAACTCTC
*
61219228 AAATGTTCTTAAACAAACT
65 AAACGTTCTTAAACAAACT
* * * *
61219247 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTAATTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATAACTCTCA
61219312 AACGTTCT
66 AACGTTCT
61219320 CAGATATAGC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
82 1 0.02
83 62 0.98
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATAACTCTCA
AACGTTCTTAAACAAACT
Found at i:61219391 original size:202 final size:202
Alignment explanation
Indices: 61219062--61219438 Score: 612
Period size: 202 Copynumber: 1.9 Consensus size: 202
61219052 ATTGGGTATT
* * *
61219062 CTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATGTAG
1 CTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATAACTCTCAAAAGTTCTCAAATATAG
61219127 CAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
66 CAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
* *
61219192 AAGGAACAAATCGAGGACACT-GCAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGATGGT
131 AAGGAACAAATCGAGGACA-TAGCAAATATGACTCTCAAAAGTTCTTAAACAAACTCAAGATGGT
61219256 TTGGCATC
195 TTGGCATC
* * * * *
61219264 CTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTAATTCTCAAACGTTCTCAGATATAG
1 CTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATAACTCTCAAAAGTTCTCAAATATAG
* * *
61219329 CATATTTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
66 CAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
*
61219394 AAGGAACAAATCGAGGACATAGCAAATATGGCTCTCAAAAGTTCT
131 AAGGAACAAATCGAGGACATAGCAAATATGACTCTCAAAAGTTCT
61219439 CAAATGTAGC
Statistics
Matches: 160, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
201 1 0.01
202 159 0.99
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (202 bp):
CTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATAACTCTCAAAAGTTCTCAAATATAG
CAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
AAGGAACAAATCGAGGACATAGCAAATATGACTCTCAAAAGTTCTTAAACAAACTCAAGATGGTT
TGGCATC
Found at i:61219458 original size:119 final size:119
Alignment explanation
Indices: 61219247--61219557 Score: 451
Period size: 119 Copynumber: 2.6 Consensus size: 119
61219237 TAAACAAACT
* * * * * * * *
61219247 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTAATTCTCA
1 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
* * * *
61219312 AACGTTCTCAGATATAGCATATTTAACCTTCAGATGTTTATACTGAAGCAGATC
66 AAAGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
* *
61219366 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAAATATGGCTCTCA
1 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
* *
61219431 AAAGTTCTCAAATGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATC
66 AAAGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
* *
61219485 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATTGTAGATATGACTCTCA
1 CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
*
61219550 AATGTTCT
66 AAAGTTCT
61219558 TAAACAAACT
Statistics
Matches: 171, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
119 171 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (119 bp):
CAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCA
AAAGTTCTCAAATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATC
Found at i:61219596 original size:321 final size:321
Alignment explanation
Indices: 61219004--61219601 Score: 1097
Period size: 321 Copynumber: 1.9 Consensus size: 321
61218994 CAAATTGAAA
*
61219004 ATAGCAGATCTAACCTTCAGATGTTTATACTGAGGCAGATCCAAGATGATTGGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTGGGTATTCTTGTGT
*
61219069 TTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATGTAGCAGATCT
66 TTACAAGGAACAAATCGAGGACATAGCAAATATGACTCTCAAAAGTTCTCAAATGTAGCAGATCT
61219134 AACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAAC
131 AACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAAC
61219199 AAATCGAGGACACTGCAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGATGGTTTGGCATC
196 AAATCGAGGACACTGCAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGATGGTTTGGCATC
*
61219264 CTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTAATTCTCAAACGTTCTCAGAT
261 CTTGGGCTTACAAGGGACAAATCGAGGACATAGCAGATTTAATTCTCAAACGTTCTCAGAT
* * *
61219325 ATAGCATATTTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTGGGTATTCTTGTGT
*
61219390 TTACAAGGAACAAATCGAGGACATAGCAAATATGGCTCTCAAAAGTTCTCAAATGTAGCAGATCT
66 TTACAAGGAACAAATCGAGGACATAGCAAATATGACTCTCAAAAGTTCTCAAATGTAGCAGATCT
* *
61219455 AACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAAC
131 AACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAAC
* *
61219520 AAATCGAGGACATTGTAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGATGGTTTGGCATC
196 AAATCGAGGACACTGCAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGATGGTTTGGCATC
61219585 CTTGGGCTTACAAGGGA
261 CTTGGGCTTACAAGGGA
61219602 AAAAATAAGG
Statistics
Matches: 266, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
321 266 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (321 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTGGGTATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAAATATGACTCTCAAAAGTTCTCAAATGTAGCAGATCT
AACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAAC
AAATCGAGGACACTGCAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGATGGTTTGGCATC
CTTGGGCTTACAAGGGACAAATCGAGGACATAGCAGATTTAATTCTCAAACGTTCTCAGAT
Found at i:61219624 original size:83 final size:83
Alignment explanation
Indices: 61219485--61219749 Score: 329
Period size: 83 Copynumber: 3.2 Consensus size: 83
61219475 GAAGTAGATC
* * * * *
61219485 CAAGATGATTTGGTATTCTTGTGTTTACAA-GGAACAAATCGAGGACATTGTAGATATGACTCTC
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGGAAAAAAT-GAGGACATTGCAGATATGACTCTC
*
61219549 AAATGTTCTTAAACAAACT
65 AAATGTTCTAAAACAAACT
* * *
61219568 CAAGATGGTTTGGCATCCTTGGGCTTACAAGGGAAAAAATAAGGACATTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGGAAAAAATGAGGACATTGCAGATATGACTCTCA
*
61219633 AATGTGCTAAAACAAACT
66 AATGTTCTAAAACAAACT
* * * * *
61219651 CGAGATGGTTTGGCATCCTTGTGCTTACAAGGGAAAAAACGAGGACATAGCAGATATGATTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGGAAAAAATGAGGACATTGCAGATATGACTCTCA
* * *
61219716 ACA-GTTCTCAAATAGA-T
66 A-ATGTTCTAAAACAAACT
61219733 CAAGATGATTTGGCATC
1 CAAGATGATTTGGCATC
61219750 TCTACAAATC
Statistics
Matches: 158, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
82 16 0.10
83 133 0.84
84 9 0.06
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGGAAAAAATGAGGACATTGCAGATATGACTCTCA
AATGTTCTAAAACAAACT
Found at i:61224548 original size:28 final size:27
Alignment explanation
Indices: 61224485--61224553 Score: 120
Period size: 27 Copynumber: 2.5 Consensus size: 27
61224475 ATATTAAGTC
*
61224485 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
61224512 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
61224540 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61224554 CGAAACCAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:61241328 original size:15 final size:15
Alignment explanation
Indices: 61241310--61241361 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
61241300 TTAATATATT
61241310 TTTAATTAAAAATTA
1 TTTAATTAAAAATTA
* *
61241325 TTTAATTATAGATTA
1 TTTAATTAAAAATTA
* *
61241340 TTTAATGAAATA-TA
1 TTTAATTAAAAATTA
61241354 TTTAATTA
1 TTTAATTA
61241362 GTGTTAAGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
14 9 0.29
15 22 0.71
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (15 bp):
TTTAATTAAAAATTA
Found at i:61241614 original size:14 final size:14
Alignment explanation
Indices: 61241595--61241625 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
61241585 AAACAAGGTC
61241595 TTGTTGCCTCATTT
1 TTGTTGCCTCATTT
61241609 TTGTTGCCTCATTT
1 TTGTTGCCTCATTT
61241623 TTG
1 TTG
61241626 AAAGCCACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.06, C:0.19, G:0.16, T:0.58
Consensus pattern (14 bp):
TTGTTGCCTCATTT
Found at i:61244450 original size:41 final size:40
Alignment explanation
Indices: 61244287--61244467 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
61244277 AATCAAGCAT
** ** * *
61244287 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
61244325 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
61244365 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
61244405 CTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
61244446 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
61244468 CATTCGAGTA
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 10 0.08
39 18 0.15
40 61 0.51
41 27 0.23
42 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:61244457 original size:81 final size:79
Alignment explanation
Indices: 61244287--61244467 Score: 211
Period size: 81 Copynumber: 2.3 Consensus size: 79
61244277 AATCAAGCAT
** * * *
61244287 CTTCGGGGTTTAG-CCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAACCCGGATATGGTC
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAACCCGGATATAGTC
* *
61244351 ACTAGCATAAATGC
66 ACTAGCACAAAAGC
** * ** *
61244365 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATGTAGT
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCAC-AAGGCCTTCGGATCTTAACCCGGATATAGT
*
61244430 CGCTTAGCACAAAAGC
65 CAC-TAGCACAAAAGC
61244446 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
61244468 CATTCGAGTA
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
78 11 0.13
79 17 0.20
80 26 0.30
81 32 0.37
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAACCCGGATATAGTC
ACTAGCACAAAAGC
Found at i:61245698 original size:38 final size:38
Alignment explanation
Indices: 61245656--61245731 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
61245646 CAAGAACTCC
61245656 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
61245694 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
61245732 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:61250625 original size:47 final size:45
Alignment explanation
Indices: 61250429--61250645 Score: 158
Period size: 46 Copynumber: 4.7 Consensus size: 45
61250419 TATATCTGTA
* * * * *
61250429 CCGATGCCATGTCCCATACATGGTCTTACACTA-ACACATCTC-GTAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTACGCTCGTCTCAAT-G
* * * * *
61250475 CCGATGCATGTCCTAGACATGTCTTACACT-GGCTTATGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTACGC-T-CGTCTCAATG
** * *
61250521 TTGACGCATGTCCCAGACATGTCTTACACCAGCGCTCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTA-CGCTCGTCTCAATG
61250567 CCGATGCCATGTCCCAGACATGATCTTACACTA-GCTC-TCAT-AATGTGG
1 CCGATG-CATGTCCCAGACATG-TCTTACACTACGCTCGTC-TCAA--T-G
61250615 CCGATGCATGTCCCAGACATGTCTTACACTA
1 CCGATGCATGTCCCAGACATGTCTTACACTA
61250646 ACTTACACAA
Statistics
Matches: 138, Mismatches: 21, Indels: 24
0.75 0.11 0.13
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 61 0.44
47 32 0.23
48 18 0.13
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTACGCTCGTCTCAATG
Found at i:61253731 original size:35 final size:35
Alignment explanation
Indices: 61253683--61253751 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
61253673 CTGTATCAAC
61253683 TCTTTGTCTGTTTATCCGACTAGTGCTGGGCACAA
1 TCTTTGTCTGTTTATCCGACTAGTGCTGGGCACAA
*
61253718 TCTTTGT-TAGTTTATCTGACTAGTGCTGGGCACA
1 TCTTTGTCT-GTTTATCCGACTAGTGCTGGGCACA
61253752 CAATTATACT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 1 0.03
35 31 0.97
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.39
Consensus pattern (35 bp):
TCTTTGTCTGTTTATCCGACTAGTGCTGGGCACAA
Found at i:61253815 original size:75 final size:74
Alignment explanation
Indices: 61253692--61253836 Score: 193
Period size: 75 Copynumber: 1.9 Consensus size: 74
61253682 CTCTTTGTCT
* * * *
61253692 GTTTATCCGACTAGTGCTGGGCACAATCTTTGTTAGTTTATCTGACTAGTGCTGGGCACA-CAAT
1 GTTTATCCGACTAGTGCTAGACACAATCTTCGTTAGTTTATCTAACTAGTG-TGGGCACATC-AT
61253756 TATACTCGTCA
64 TATACTCGTCA
* ** *
61253767 GTTTATCCGTCTAGTGCTAGATGCAATCTTCGTTAGTTTATCTAACTAGTGTTGGCACATCATTA
1 GTTTATCCGACTAGTGCTAGACACAATCTTCGTTAGTTTATCTAACTAGTGTGGGCACATCATTA
61253832 TACTC
66 TACTC
61253837 ATTGGTTTAC
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
74 16 0.26
75 45 0.74
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (74 bp):
GTTTATCCGACTAGTGCTAGACACAATCTTCGTTAGTTTATCTAACTAGTGTGGGCACATCATTA
TACTCGTCA
Found at i:61267700 original size:45 final size:45
Alignment explanation
Indices: 61267636--61267906 Score: 347
Period size: 45 Copynumber: 6.1 Consensus size: 45
61267626 GGAAAGAACT
*
61267636 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* *
61267681 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCA
1 GGTGAAATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
*
61267726 GGTGAGATATT-TTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * * * *
61267770 GATGAGATATTATTAGGGCCTTTAAGCCTAGCAGGATATAATGCC
1 GGTGAAATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * * *
61267815 GGTGAGATACTATTCGGG-CTTTCGAGCCTAACAGGCTATAATGTC
1 GGTGAAATATTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCC
* *
61267860 GGTGAAATGA-TA-TCGGGCC-TCGAGCCTAGCAGGCGA-AATGCC
1 GGTGAAAT-ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
61267902 GGTGA
1 GGTGA
61267907 TTTGAGAAAA
Statistics
Matches: 202, Mismatches: 20, Indels: 11
0.87 0.09 0.05
Matches are distributed among these distances:
42 10 0.05
43 13 0.06
44 52 0.26
45 126 0.62
46 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (45 bp):
GGTGAAATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
Found at i:61267878 original size:89 final size:89
Alignment explanation
Indices: 61267646--61267906 Score: 352
Period size: 89 Copynumber: 3.0 Consensus size: 89
61267636 GGTGAAATGT
*
61267646 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGTTATTCGGGCCTTTGAGCCTA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGGGCCTTTGAGCCTA
*
61267711 GCAGGCTATAATGCAGGTGAGATA
66 GCAGGCTATAATGCCGGTGAGATA
* * * * *
61267735 TTTTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGAT-ATTATTAGGGCCTTTAAGCCT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TATTCGGGCCTTTGAGCCT
*
61267799 AGCAGGATATAATGCCGGTGAGATA
65 AGCAGGCTATAATGCCGGTGAGATA
* * *
61267824 CTATTCGGG-CTTTCGAGCCTAACAGGCTATAATGTCGGTGAAATGATA-TCGGGCC-TCGAGCC
1 -TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGGGCCTTTGAGCC
*
61267886 TAGCAGGCGA-AATGCCGGTGA
64 TAGCAGGCTATAATGCCGGTGA
61267907 TTTGAGAAAA
Statistics
Matches: 150, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
87 11 0.07
88 13 0.09
89 90 0.60
90 35 0.23
91 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (89 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGGGCCTTTGAGCCTA
GCAGGCTATAATGCCGGTGAGATA
Found at i:61270849 original size:22 final size:21
Alignment explanation
Indices: 61270798--61270852 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
61270788 AATAATAACT
* *
61270798 AAACTAGTAATAAAAACAGTAA
1 AAACTAATAA-AAAAAAAGTAA
61270820 AAAC--ATAAAAATAAAAGTAA
1 AAACTAATAAAAA-AAAAGTAA
61270840 AAACTAATAAAAA
1 AAACTAATAAAAA
61270853 GAAACAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 3 0.11
20 14 0.50
22 11 0.39
ACGTcount: A:0.71, C:0.07, G:0.05, T:0.16
Consensus pattern (21 bp):
AAACTAATAAAAAAAAAGTAA
Found at i:61271013 original size:3 final size:3
Alignment explanation
Indices: 61271005--61271048 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
61270995 GTATCAATGG
*
61271005 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
61271049 GTAAAATGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:61272005 original size:4 final size:4
Alignment explanation
Indices: 61271991--61272023 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
61271981 TGCAAAAACA
*
61271991 TATT T-TT TATT TATT TAAT TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TATT TATT TA
61272024 ATGTAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:61274165 original size:46 final size:48
Alignment explanation
Indices: 61274097--61274226 Score: 180
Period size: 46 Copynumber: 2.8 Consensus size: 48
61274087 GTGGTATGTA
*
61274097 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-T-CATGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACACGAG
* *
61274143 TGCCAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGAGACGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ACACGAG
*
61274189 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC
61274227 GAGATATACA
Statistics
Matches: 73, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 1 0.01
46 65 0.89
47 1 0.01
49 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACACGAG
Found at i:61274343 original size:46 final size:48
Alignment explanation
Indices: 61274284--61274452 Score: 141
Period size: 46 Copynumber: 3.6 Consensus size: 48
61274274 TGTTGTGTGT
* * *
61274284 CAGTCTAAGACCTGTCTAGGACATGGCAT-TAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACTCGATAGATGAAAGC
* * * * *
61274330 CAGTGTAAGACCTGTCTAGGACATTGTATCGGGCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTAGGACATGGCATC-GACTCGATAGATGAAAGC
* * * **
61274379 CAGTGTAAGACCTGTCTGGGACAGGGCATC-ACTTCAAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGAC-TCGATAGATGAAAGC
* *
61274425 TAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTAGGACATGGC
61274453 GTCGGTATTT
Statistics
Matches: 98, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
46 41 0.42
47 15 0.15
48 5 0.05
49 37 0.38
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATCGACTCGATAGATGAAAGC
Found at i:61274388 original size:49 final size:46
Alignment explanation
Indices: 61274282--61274407 Score: 135
Period size: 49 Copynumber: 2.7 Consensus size: 46
61274272 CTTGTTGTGT
* * *
61274282 GTCAGTCTAAGACCTGTCTAGGACATGGCATTACCGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTAGGACATGGCATGACCGATAGATGAAA
* * * * *
61274328 GCCAGTGTAAGACCTGTCTAGGACATTGTATCGGGCTCGATATATGAAA
1 GTCAGTGTAAGACCTGTCTAGGACATGGCAT--GAC-CGATAGATGAAA
* *
61274377 GTCAGTGTAAGACCTGTCTGGGACAGGGCAT
1 GTCAGTGTAAGACCTGTCTAGGACATGGCAT
61274408 CACTTCAATG
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
46 27 0.42
48 1 0.02
49 36 0.56
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
GTCAGTGTAAGACCTGTCTAGGACATGGCATGACCGATAGATGAAA
Found at i:61275981 original size:53 final size:53
Alignment explanation
Indices: 61275840--61275990 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
61275830 ATAAGTGCGC
* **
61275840 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
61275893 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
61275946 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
61275991 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:61295992 original size:41 final size:41
Alignment explanation
Indices: 61295935--61296084 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
61295925 TCGGGGTTTA
61295935 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
61295976 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
61296017 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
61296057 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
61296085 TGAGTCAGCG
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:61304151 original size:41 final size:41
Alignment explanation
Indices: 61304048--61304153 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 41
61304038 TCGGGGTTTA
*
61304048 AATCCGAGCTTGGTCTCGAAGGGCTCTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTCTTAAGCCAATGTCAT
* * * * **
61304089 AA-CCGAACCTAGTTTCGAAGGGC-CTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTCTT-AAGCCAATGTCAT
*
61304129 AATCTGAGCTTGGTCTCGAAGGGCT
1 AATCCGAGCTTGGTCTCGAAGGGCT
61304154 TTTTAAGTCA
Statistics
Matches: 50, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
39 3 0.06
40 29 0.58
41 18 0.36
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTCTTAAGCCAATGTCAT
Found at i:61306330 original size:23 final size:23
Alignment explanation
Indices: 61306300--61306345 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
61306290 AGCGTGTATG
61306300 GATGATAGAAGGTGACCAAAGGC
1 GATGATAGAAGGTGACCAAAGGC
61306323 GATGATAGAAGGTGACCAAAGGC
1 GATGATAGAAGGTGACCAAAGGC
61306346 TTGGAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.35, T:0.13
Consensus pattern (23 bp):
GATGATAGAAGGTGACCAAAGGC
Found at i:61317240 original size:48 final size:46
Alignment explanation
Indices: 61317136--61317255 Score: 143
Period size: 47 Copynumber: 2.6 Consensus size: 46
61317126 ATGGATGTGT
* ** *
61317136 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGA
* *
61317182 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CAAGACGAGA
*
61317230 GCTAGTGTAAGACATGTTTGGGACAT
1 GCTAGTGTAAGACATGTCTGGGACAT
61317256 ACATTGACCT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
46 12 0.19
47 28 0.44
48 24 0.38
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGA
Found at i:61317377 original size:47 final size:47
Alignment explanation
Indices: 61317130--61317400 Score: 193
Period size: 48 Copynumber: 5.8 Consensus size: 47
61317120 GGTGATATGG
* * * * * *
61317130 ATGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATTGGC-CACATT
1 ATGTGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGA-T
* *
61317176 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTA-TTA-AG
1 ATGTGAGCTAGTGTAAGACC-TGTCTGGGACATGGCATC-G-ACTTAGAT
* * * * * * *
61317224 ACGAGAGCTAGTGTAAGACATGTTTGGGACAT-ACATTGACCTCGAGAT
1 ATGTGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGA-CT-TAGAT
** * * *
61317272 ATGCAAGCTAGTGTAAGACCTGTCTAGG--ATGGCATCGGCTT-GAC
1 ATGTGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGAT
*
61317316 ATGTG-TC-AGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGAT
1 ATGTGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGAT
* * *
61317361 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
1 ATGTGAGCTAGTGTAAGACC-TGTCTGGGACATGGCATCG
61317401 GCATCGTACC
Statistics
Matches: 175, Mismatches: 34, Indels: 30
0.73 0.14 0.13
Matches are distributed among these distances:
42 18 0.10
43 1 0.01
44 18 0.10
45 8 0.05
46 26 0.15
47 39 0.22
48 62 0.35
49 2 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGAT
Found at i:61321209 original size:22 final size:24
Alignment explanation
Indices: 61321160--61321209 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
61321150 AGTTTAATAC
*
61321160 TGCCTAGGGCATCATGATATTAGA
1 TGCCTAGGGCATCACGATATTAGA
*
61321184 -GCCTA-GGTATCACGATATT-GA
1 TGCCTAGGGCATCACGATATTAGA
61321205 TGCCT
1 TGCCT
61321210 GACAAGAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 2 0.09
22 16 0.70
23 5 0.22
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (24 bp):
TGCCTAGGGCATCACGATATTAGA
Found at i:61323997 original size:16 final size:16
Alignment explanation
Indices: 61323976--61324009 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
61323966 AGACAAAAAG
61323976 ACTTGACAAAATAAAC
1 ACTTGACAAAATAAAC
*
61323992 ACTTGACAAAATGAAC
1 ACTTGACAAAATAAAC
61324008 AC
1 AC
61324010 ATGCCGTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (16 bp):
ACTTGACAAAATAAAC
Found at i:61328143 original size:22 final size:22
Alignment explanation
Indices: 61328094--61328143 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
61328084 TTAAATTGAA
* *
61328094 ATTATTTTTTTATTATTGTTTG
1 ATTATTTTATAATTATTGTTTG
* * *
61328116 AATATTTTATAATTCTTGTTTT
1 ATTATTTTATAATTATTGTTTG
61328138 ATTATT
1 ATTATT
61328144 AATTTTGTTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.02, G:0.06, T:0.68
Consensus pattern (22 bp):
ATTATTTTATAATTATTGTTTG
Found at i:61328246 original size:17 final size:17
Alignment explanation
Indices: 61328207--61328249 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
61328197 GCATTTAATG
*
61328207 TATTTTTAATTTTTTAA
1 TATTTTTAATTTTCTAA
*
61328224 TTTTTTTAATTTTACT-A
1 TATTTTTAATTTT-CTAA
61328241 TATTTTTAA
1 TATTTTTAA
61328250 AAAAATTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (17 bp):
TATTTTTAATTTTCTAA
Found at i:61329026 original size:21 final size:21
Alignment explanation
Indices: 61329002--61329050 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
61328992 TATTCAATTT
*
61329002 GGTTTAGGTTTTATAATATTC
1 GGTTCAGGTTTTATAATATTC
*
61329023 GGTTCAGGTTTTATAATGTTC
1 GGTTCAGGTTTTATAATATTC
61329044 GGTTCAG
1 GGTTCAG
61329051 TTTCATGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.20, C:0.08, G:0.24, T:0.47
Consensus pattern (21 bp):
GGTTCAGGTTTTATAATATTC
Found at i:61330140 original size:18 final size:19
Alignment explanation
Indices: 61330078--61330190 Score: 92
Period size: 19 Copynumber: 5.9 Consensus size: 19
61330068 TTATTCTAGA
61330078 AATTTTTT-T-ATTTTTT-
1 AATTTTTTATAATTTTTTG
*
61330094 AACTTTCTTTATATTTTTTTTG
1 AA-TTT-TTTATA-ATTTTTTG
61330116 AATTTTTTATAATTTTTTG
1 AATTTTTTATAATTTTTTG
*
61330135 AA-TTTTTATAAATATTTTG
1 AATTTTTTAT-AATTTTTTG
* *
61330154 -ATTTTTAAAAATTATTTTG
1 AATTTTTTATAATT-TTTTG
*
61330173 AATTATTTTGTAATTTTT
1 AATT-TTTTATAATTTTT
61330191 GTTGGGAGAA
Statistics
Matches: 77, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
16 2 0.03
17 3 0.04
18 14 0.18
19 28 0.36
20 12 0.16
21 16 0.21
22 2 0.03
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.66
Consensus pattern (19 bp):
AATTTTTTATAATTTTTTG
Found at i:61335684 original size:124 final size:124
Alignment explanation
Indices: 61335464--61335707 Score: 443
Period size: 124 Copynumber: 2.0 Consensus size: 124
61335454 TGAGTGATAT
61335464 CTTATTAAAATTTTTCAAACAACTATTTAGATAATGTCTTAAATGGGAGGTTCCATTAGAAGATT
1 CTTATTAAAATTTTTCAAACAACTATTTAGATAATGTCTTAAATGGGAGGTTCCATTAGAAGATT
61335529 TAGCAAAGAAGGTACTCTTACAGTGATTACATTATGCCATCAATTCATCTTTGTTATAC
66 TAGCAAAGAAGGTACTCTTACAGTGATTACATTATGCCATCAATTCATCTTTGTTATAC
* * * *
61335588 CTTATTAAATTTTTTCATACAACTATTTAGATGATGTCTTAAATGGGAGGTTCCATTAGAGGATT
1 CTTATTAAAATTTTTCAAACAACTATTTAGATAATGTCTTAAATGGGAGGTTCCATTAGAAGATT
*
61335653 TAGCAAAGAAGGTACTCTTACAGTGATTACATTATGCCTTCAATTCATCTTTGTT
66 TAGCAAAGAAGGTACTCTTACAGTGATTACATTATGCCATCAATTCATCTTTGTT
61335708 CCCCCACCTT
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
124 115 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (124 bp):
CTTATTAAAATTTTTCAAACAACTATTTAGATAATGTCTTAAATGGGAGGTTCCATTAGAAGATT
TAGCAAAGAAGGTACTCTTACAGTGATTACATTATGCCATCAATTCATCTTTGTTATAC
Found at i:61340499 original size:50 final size:50
Alignment explanation
Indices: 61340424--61340523 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
61340414 GCTTGACTTC
61340424 CTTGCTTATATTGTTACTGAAATAAATCAAAGATTTATCAAAATTTACCA
1 CTTGCTTATATTGTTACTGAAATAAATCAAAGATTTATCAAAATTTACCA
61340474 CTTGCTTATATTGTTACTGAAATAAATCAAAGATTTATCAAAATTTACCA
1 CTTGCTTATATTGTTACTGAAATAAATCAAAGATTTATCAAAATTTACCA
61340524 GTTGTCTTGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (50 bp):
CTTGCTTATATTGTTACTGAAATAAATCAAAGATTTATCAAAATTTACCA
Found at i:61356202 original size:7 final size:7
Alignment explanation
Indices: 61356190--61356223 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
61356180 ATCAGATTTA
61356190 TCACTTG
1 TCACTTG
*
61356197 TCACTTA
1 TCACTTG
61356204 TCACTTG
1 TCACTTG
61356211 TCACTTG
1 TCACTTG
61356218 TCACTT
1 TCACTT
61356224 ATCTGATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.18, C:0.29, G:0.09, T:0.44
Consensus pattern (7 bp):
TCACTTG
Found at i:61356206 original size:14 final size:14
Alignment explanation
Indices: 61356187--61356223 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
61356177 CAGATCAGAT
61356187 TTATCACTTGTCAC
1 TTATCACTTGTCAC
61356201 TTATCACTTGTCAC
1 TTATCACTTGTCAC
*
61356215 TTGTCACTT
1 TTATCACTT
61356224 ATCTGATAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.19, C:0.27, G:0.08, T:0.46
Consensus pattern (14 bp):
TTATCACTTGTCAC
Found at i:61356276 original size:44 final size:44
Alignment explanation
Indices: 61356205--61356317 Score: 165
Period size: 44 Copynumber: 2.6 Consensus size: 44
61356195 TGTCACTTAT
* * *
61356205 CACTTGTCACTTGTCACTTATCTGATAAGTGTAGCTAAAG-CTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAG-TAAAGACTAC
**
61356249 CACTTATCACTTGTCACTGATCAGATAAGTGTAGTTGAGACTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGTAAAGACTAC
61356293 CACTTATCACTTGTCACTGATCAGA
1 CACTTATCACTTGTCACTGATCAGA
61356318 AGTACTCAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 3 0.05
44 60 0.95
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (44 bp):
CACTTATCACTTGTCACTGATCAGATAAGTGTAGTAAAGACTAC
Found at i:61362320 original size:17 final size:17
Alignment explanation
Indices: 61362298--61362349 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
61362288 ACGGGTGACC
61362298 CACACGCCCGTGTGTGA
1 CACACGCCCGTGTGTGA
*
61362315 CACACG---G-GT-AGA
1 CACACGCCCGTGTGTGA
61362327 CCACACGCCCGTGTGTGA
1 -CACACGCCCGTGTGTGA
61362345 CACAC
1 CACAC
61362350 AGGTAGACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
12 2 0.07
13 8 0.30
14 1 0.04
16 1 0.04
17 13 0.48
18 2 0.07
ACGTcount: A:0.23, C:0.37, G:0.27, T:0.13
Consensus pattern (17 bp):
CACACGCCCGTGTGTGA
Found at i:61362320 original size:30 final size:30
Alignment explanation
Indices: 61362285--61362372 Score: 151
Period size: 30 Copynumber: 2.9 Consensus size: 30
61362275 TAGGCACTTT
61362285 CACACGGGT-GACCCACACGCCCGTGTGTGA
1 CACACGGGTAGA-CCACACGCCCGTGTGTGA
61362315 CACACGGGTAGACCACACGCCCGTGTGTGA
1 CACACGGGTAGACCACACGCCCGTGTGTGA
*
61362345 CACACAGGTAGACCACACGCCCGTGTGT
1 CACACGGGTAGACCACACGCCCGTGTGT
61362373 CATGGCCATG
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
30 54 0.96
31 2 0.04
ACGTcount: A:0.23, C:0.35, G:0.28, T:0.14
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCGTGTGTGA
Found at i:61363503 original size:48 final size:48
Alignment explanation
Indices: 61363443--61363534 Score: 166
Period size: 48 Copynumber: 1.9 Consensus size: 48
61363433 TCAGTGGCCA
* *
61363443 ATGCCATGTCCCAGACATGGTCTTACACTAGCACATATATCAACACCG
1 ATGCCATGTCCCAGACATAGTCTTACACTAGCACACATATCAACACCG
61363491 ATGCCATGTCCCAGACATAGTCTTACACTAGCACACATATCAAC
1 ATGCCATGTCCCAGACATAGTCTTACACTAGCACACATATCAAC
61363535 TAAATGTCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.33, C:0.32, G:0.13, T:0.23
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATAGTCTTACACTAGCACACATATCAACACCG
Found at i:61368118 original size:30 final size:30
Alignment explanation
Indices: 61368079--61368151 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
61368069 TTTGGAGAGT
* *
61368079 CACATGCCCGTGTAGGCAGCCCTGTAATCA
1 CACACGCCCGTGTAGGCAACCCTGTAATCA
* *
61368109 CACACGCCCGTGTGGGCAACCCTGTGATCA
1 CACACGCCCGTGTAGGCAACCCTGTAATCA
61368139 CACACGCCCGTGT
1 CACACGCCCGTGT
61368152 CCTCCAACCG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.21, C:0.37, G:0.25, T:0.18
Consensus pattern (30 bp):
CACACGCCCGTGTAGGCAACCCTGTAATCA
Found at i:61370040 original size:48 final size:48
Alignment explanation
Indices: 61369891--61370262 Score: 309
Period size: 48 Copynumber: 7.7 Consensus size: 48
61369881 TAAAATGTCA
* * * * *
61369891 ATGCCATGTCCCGGACATGGTCTTACAGTGGCTCTCATACATTG-GTACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT--ATTGAG-GCCG
* * * ** * *
61369941 ATGCCATGTCCCAAAAATGGTCTTACACT-G-ACACATATAACAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT--TGAGGCCG
* * * * *
61369989 ATGCCATGTTCCAAACATGGTCTTACACTAGTTCGCATATTGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCCG
* * * * *
61370037 ATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCCG
* * * ** **
61370085 ATGCCATGTCCCAGACATGGTCTTATACGAGCACACATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCCG
* * * * * *
61370133 ATGCCATGTCCCAGACATGGTCTTACATTGGATCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCCG
* ** **
61370181 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCCG
*
61370229 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC
61370263 TCTGTAACAT
Statistics
Matches: 250, Mismatches: 67, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
46 2 0.01
48 215 0.86
49 2 0.01
50 31 0.12
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCCG
Found at i:61370087 original size:96 final size:96
Alignment explanation
Indices: 61369937--61370264 Score: 426
Period size: 96 Copynumber: 3.4 Consensus size: 96
61369927 ATACATTGGT
* * * * ** * *
61369937 ACCGATGCCATGTCCCAAAAATGGTCTTACACTGACACAT-ATAACAAT-GTCGATGCCATGTTC
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAA-TGTGGCCGATGCCATGTCC
* ** * ** *
61370000 CAAACATGGTCTTACACTAGTTCGCATATTGAG
64 CAGACATGGTCTTACACTAGCACACATATCAAC
* * *
61370033 GCTGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCA
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCA
* *
61370098 GACATGGTCTTATACGAGCACACATATCAAC
66 GACATGGTCTTACACTAGCACACATATCAAC
* *
61370129 ACCGATGCCATGTCCCAGACATGGTCTTACATTGGATCTCATAATGTGGCCGATGCCATGTCCCA
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCA
61370194 GACATGGTCTTACACTAGCACACATATCAAC
66 GACATGGTCTTACACTAGCACACATATCAAC
61370225 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC
61370265 TGTAACATCT
Statistics
Matches: 201, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
95 2 0.01
96 199 0.99
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (96 bp):
ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCA
GACATGGTCTTACACTAGCACACATATCAAC
Found at i:61370153 original size:144 final size:143
Alignment explanation
Indices: 61369891--61370258 Score: 425
Period size: 144 Copynumber: 2.5 Consensus size: 143
61369881 TAAAATGTCA
* * *
61369891 ATGCCATGTCCCGGACATGGTCTTACAGTGGCTCTCATACATTGGTACCGATGCCATGTCCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATTGG--CCGATGCCATGTCCCAGA
* * *** * *
61369956 AATGGTCTTACACTGACACATATAACAATGTCGATGCCATGTTCCAAACATGGTCTTACACTAGT
63 CATGGTCTTACACTGACACACATAACAACACCGATGCCATGTCCCAAACATGGTCTTACACTAGA
* *
61370021 TCGCATATTGAGGCTG
128 TCGCATAATGAGGCCG
*
61370037 ATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-TGGCCGATGCCATGTCCCAGACA
* * * * *
61370102 TGGTCTTATAC-GAGCACACATATCAACACCGATGCCATGTCCCAGACATGGTCTTACATTGGAT
65 TGGTCTTACACTGA-CACACATAACAACACCGATGCCATGTCCCAAACATGGTCTTACACTAGAT
* *
61370166 CTCATAATGTGGCCG
129 CGCATAATGAGGCCG
* * * ***
61370181 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAACACCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT--TGGCCGATGCCATGTCCCAGAC
61370245 ATGGTCTTACACTG
64 ATGGTCTTACACTG
61370259 GCTCTCTGTA
Statistics
Matches: 189, Mismatches: 29, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
143 4 0.02
144 143 0.76
145 3 0.02
146 39 0.21
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (143 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATTGGCCGATGCCATGTCCCAGACAT
GGTCTTACACTGACACACATAACAACACCGATGCCATGTCCCAAACATGGTCTTACACTAGATCG
CATAATGAGGCCG
Found at i:61379152 original size:9 final size:9
Alignment explanation
Indices: 61379099--61379158 Score: 52
Period size: 10 Copynumber: 6.6 Consensus size: 9
61379089 ACACATGATA
*
61379099 AAAAATGAT
1 AAAAATTAT
61379108 AAAAA-TAT
1 AAAAATTAT
* *
61379116 TAAAATCAAT
1 AAAAAT-TAT
61379126 AAAAATT-T
1 AAAAATTAT
61379134 AAAAATTTAT
1 AAAAA-TTAT
61379144 AAAAATTAT
1 AAAAATTAT
61379153 AGAAAA
1 A-AAAA
61379159 ATATTTAAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
8 12 0.29
9 12 0.29
10 17 0.41
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:61379191 original size:32 final size:32
Alignment explanation
Indices: 61379135--61379221 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 32
61379125 TAAAAATTTA
61379135 AAAATTTA-TAAAAATTATAG-AAAAATAT-TT
1 AAAATTTATTAAAAA-TATAGAAAAAATATATT
* * *
61379165 AAAGTTTGTTGAAAAATATAGAAAAAATGTATT
1 AAAATTTATT-AAAAATATAGAAAAAATATATT
*
61379198 AAAATTTATTTAAAATATAGAAAA
1 AAAATTTATTAAAAATATAGAAAA
61379222 TTATTAGAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
30 6 0.13
31 6 0.13
32 25 0.53
33 10 0.21
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.34
Consensus pattern (32 bp):
AAAATTTATTAAAAATATAGAAAAAATATATT
Found at i:61379223 original size:20 final size:20
Alignment explanation
Indices: 61379198--61379241 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
61379188 AAAATGTATT
*
61379198 AAAATTTATT-TAAAATATA
1 AAAATTTATTAGAAAATATA
61379217 GAAAA-TTATTAGAAAATATA
1 -AAAATTTATTAGAAAATATA
61379237 AAAAT
1 AAAAT
61379242 AGAAAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
AAAATTTATTAGAAAATATA
Found at i:61379239 original size:27 final size:26
Alignment explanation
Indices: 61379208--61379267 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 26
61379198 AAAATTTATT
61379208 TAAAATATAGAAAA-TTATTAGAAAATA
1 TAAAA-ATAGAAAATTTATTA-AAAATA
*
61379235 TAAAAATAGAAAATTTATTATAAATA
1 TAAAAATAGAAAATTTATTAAAAATA
61379261 TAGAAAA
1 TA-AAAA
61379268 AAAATTCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 15 0.50
27 15 0.50
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (26 bp):
TAAAAATAGAAAATTTATTAAAAATA
Found at i:61379243 original size:26 final size:28
Alignment explanation
Indices: 61379208--61379268 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
61379198 AAAATTTATT
61379208 TAAAATATAGAAAA-TTATTAGAAA-ATA
1 TAAAA-ATAGAAAATTTATTAGAAATATA
*
61379235 TAAAAATAGAAAATTTATTATAAATATA
1 TAAAAATAGAAAATTTATTAGAAATATA
*
61379263 GAAAAA
1 TAAAAA
61379269 AAATTCTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 8 0.27
27 14 0.47
28 8 0.27
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.30
Consensus pattern (28 bp):
TAAAAATAGAAAATTTATTAGAAATATA
Found at i:61379665 original size:11 final size:11
Alignment explanation
Indices: 61379641--61379699 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
61379631 TAACTCTAAA
61379641 TTTTATA-ATT
1 TTTTATATATT
* *
61379651 TTTTTTATATA
1 TTTTATATATT
61379662 TTTTA-ATAATT
1 TTTTATAT-ATT
61379673 TTTTATATATT
1 TTTTATATATT
* *
61379684 TTTAATATATA
1 TTTTATATATT
61379695 TTTTA
1 TTTTA
61379700 AAATTTTAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
10 8 0.21
11 29 0.74
12 2 0.05
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTATATATT
Found at i:61379666 original size:21 final size:20
Alignment explanation
Indices: 61379640--61379748 Score: 82
Period size: 20 Copynumber: 5.3 Consensus size: 20
61379630 GTAACTCTAA
61379640 ATTTTATAATTTTTTTTATAT
1 ATTTTATAA-TTTTTTTATAT
61379661 ATTTTAATAA-TTTTTTATAT
1 ATTTT-ATAATTTTTTTATAT
*
61379681 ATTTT-TAATATATATTTTA-AA
1 ATTTTATAAT-T-T-TTTTATAT
* * * *
61379702 ATTTTAAAAACTTTTCTAAAT
1 ATTTT-ATAATTTTTTTATAT
*
61379723 -TTTTATAATTTTTTTCTAT
1 ATTTTATAATTTTTTTATAT
61379742 ATTTTAT
1 ATTTTAT
61379749 TGATTTTAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 19
0.70 0.10 0.19
Matches are distributed among these distances:
18 3 0.04
19 10 0.14
20 30 0.43
21 14 0.20
22 10 0.14
23 2 0.03
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTTTATAATTTTTTTATAT
Found at i:61379693 original size:33 final size:31
Alignment explanation
Indices: 61379641--61379706 Score: 96
Period size: 33 Copynumber: 2.1 Consensus size: 31
61379631 TAACTCTAAA
**
61379641 TTTTATAATTTTTTTTATATATTTTAATAATT
1 TTTTATAATTTTTAATATATATTTTAA-AATT
61379673 TTTTATATATTTTTAATATATATTTTAAAATT
1 TTTTATA-ATTTTTAATATATATTTTAAAATT
61379705 TT
1 TT
61379707 AAAAACTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (31 bp):
TTTTATAATTTTTAATATATATTTTAAAATT
Found at i:61379725 original size:9 final size:9
Alignment explanation
Indices: 61379652--61379735 Score: 53
Period size: 10 Copynumber: 8.6 Consensus size: 9
61379642 TTTATAATTT
61379652 TTTTTATATA
1 TTTTTATA-A
*
61379662 TTTTAATAA
1 TTTTTATAA
61379671 TTTTTTATATA
1 -TTTTTATA-A
61379682 TTTTTAATATA
1 TTTTT-ATA-A
*
61379693 TATTTTAAAA
1 T-TTTTATAA
* *
61379703 TTTTAAAAA
1 TTTTTATAA
61379712 CTTTTCTA-AA
1 -TTTT-TATAA
61379722 TTTTTATAA
1 TTTTTATAA
61379731 TTTTT
1 TTTTT
61379736 TTCTATATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
8 2 0.03
9 19 0.31
10 27 0.44
11 10 0.16
12 4 0.06
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:61379748 original size:20 final size:20
Alignment explanation
Indices: 61379635--61379748 Score: 67
Period size: 21 Copynumber: 5.6 Consensus size: 20
61379625 AGATAGTAAC
61379635 TCTAAATTTTATAATTTTTT
1 TCTAAATTTTATAATTTTTT
61379655 T-TATATATTTTAATAA-TTTTT
1 TCTA-A-ATTTT-ATAATTTTTT
* *
61379676 TATATATTTT-TAATATATATTT
1 TCTAAATTTTATAAT-T-T-TTT
* ***
61379698 T-AAAATTTTA-AAAACTTT
1 TCTAAATTTTATAATTTTTT
61379716 TCTAAATTTTTATAATTTTTT
1 TCTAAA-TTTTATAATTTTTT
*
61379737 TCTATATTTTAT
1 TCTAAATTTTAT
61379749 TGATTTTAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 24
0.67 0.10 0.23
Matches are distributed among these distances:
18 7 0.10
19 5 0.07
20 19 0.27
21 30 0.42
22 10 0.14
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (20 bp):
TCTAAATTTTATAATTTTTT
Found at i:61383739 original size:25 final size:25
Alignment explanation
Indices: 61383702--61383749 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61383692 GCAAATATGC
* **
61383702 TATGTTGAGTGATGTGCGAACATGT
1 TATGTTGAATGATAAGCGAACATGT
61383727 TATGTTGAATGATAAGCGAACAT
1 TATGTTGAATGATAAGCGAACAT
61383750 TCATGCGAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.33
Consensus pattern (25 bp):
TATGTTGAATGATAAGCGAACATGT
Found at i:61383972 original size:22 final size:23
Alignment explanation
Indices: 61383927--61383975 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
61383917 CCCTGTCCAG
*
61383927 TTAACCTACGAACCCCTACTTTA
1 TTAACCTACGAACCCCTACCTTA
* *
61383950 TTAACTTACGAA-CCCTGCCTTA
1 TTAACCTACGAACCCCTACCTTA
61383972 TTAA
1 TTAA
61383976 TATGCAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.31, C:0.31, G:0.06, T:0.33
Consensus pattern (23 bp):
TTAACCTACGAACCCCTACCTTA
Found at i:61383978 original size:287 final size:287
Alignment explanation
Indices: 61383462--61384027 Score: 1114
Period size: 287 Copynumber: 2.0 Consensus size: 287
61383452 ATGTTATAAT
*
61383462 TTCATGCGATCCTTGCAGTGTGTTACGTGAACCATGTTATATTTCCATGTGAGCTCTATAGTATG
1 TTCATGCGAACCTTGCAGTGTGTTACGTGAACCATGTTATATTTCCATGTGAGCTCTATAGTATG
61383527 ATATGTGAACCTGTTATATGACATGCGAAGGTATGCTAAGTGAACCCAGCATGATATGTGAACAT
66 ATATGTGAACCTGTTATATGACATGCGAAGGTATGCTAAGTGAACCCAGCATGATATGTGAACAT
*
61383592 TGGCTTGATAACATGTGACCCCTTGCTAATATGCGAACCCCTGTCCAGTTAACCTGCGAACCCCT
131 TGGCTTGATAACATGTGACCCCTTGCTAATATGCGAACCCCTGTCCAGTTAACCTACGAACCCCT
61383657 ACTTTATTAACTTACGAACCCTGCCTTATTAATATGCAAATATGCTATGTTGAGTGATGTGCGAA
196 ACTTTATTAACTTACGAACCCTGCCTTATTAATATGCAAATATGCTATGTTGAGTGATGTGCGAA
61383722 CATGTTATGTTGAATGATAAGCGAACA
261 CATGTTATGTTGAATGATAAGCGAACA
61383749 TTCATGCGAACCTTGCAGTGTGTTACGTGAACCATGTTATATTTCCATGTGAGCTCTATAGTATG
1 TTCATGCGAACCTTGCAGTGTGTTACGTGAACCATGTTATATTTCCATGTGAGCTCTATAGTATG
61383814 ATATGTGAACCTGTTATATGACATGCGAAGGTATGCTAAGTGAACCCAGCATGATATGTGAACAT
66 ATATGTGAACCTGTTATATGACATGCGAAGGTATGCTAAGTGAACCCAGCATGATATGTGAACAT
61383879 TGGCTTGATAACATGTGACCCCTTGCTAATATGCGAACCCCTGTCCAGTTAACCTACGAACCCCT
131 TGGCTTGATAACATGTGACCCCTTGCTAATATGCGAACCCCTGTCCAGTTAACCTACGAACCCCT
61383944 ACTTTATTAACTTACGAACCCTGCCTTATTAATATGCAAATATGCTATGTTGAGTGATGTGCGAA
196 ACTTTATTAACTTACGAACCCTGCCTTATTAATATGCAAATATGCTATGTTGAGTGATGTGCGAA
61384009 CATGTTATGTTGAATGATA
261 CATGTTATGTTGAATGATA
61384028 TCTGAACATG
Statistics
Matches: 277, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
287 277 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (287 bp):
TTCATGCGAACCTTGCAGTGTGTTACGTGAACCATGTTATATTTCCATGTGAGCTCTATAGTATG
ATATGTGAACCTGTTATATGACATGCGAAGGTATGCTAAGTGAACCCAGCATGATATGTGAACAT
TGGCTTGATAACATGTGACCCCTTGCTAATATGCGAACCCCTGTCCAGTTAACCTACGAACCCCT
ACTTTATTAACTTACGAACCCTGCCTTATTAATATGCAAATATGCTATGTTGAGTGATGTGCGAA
CATGTTATGTTGAATGATAAGCGAACA
Found at i:61384026 original size:25 final size:25
Alignment explanation
Indices: 61383989--61384079 Score: 103
Period size: 25 Copynumber: 3.6 Consensus size: 25
61383979 GCAAATATGC
* *
61383989 TATGTTGAGTGATGTGC-GAACATGT
1 TATGTTGAATGATAT-CTGAACATGT
61384014 TATGTTGAATGATATCTGAACATGT
1 TATGTTGAATGATATCTGAACATGT
* * *
61384039 TACGTTGAATGATATATGAACATGC
1 TATGTTGAATGATATCTGAACATGT
*
61384064 TATGATTGAGTGATAT
1 TATG-TTGAATGATAT
61384080 ACGAACCCTT
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
24 1 0.02
25 46 0.81
26 10 0.18
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (25 bp):
TATGTTGAATGATATCTGAACATGT
Found at i:61388610 original size:22 final size:22
Alignment explanation
Indices: 61388585--61388669 Score: 89
Period size: 22 Copynumber: 3.8 Consensus size: 22
61388575 GCAAACCCAT
* *
61388585 GCTATGTTATATGCGAACCTAA
1 GCTATGTGATATGTGAACCTAA
* * *
61388607 GCTATATGATATGTGAACTTAT
1 GCTATGTGATATGTGAACCTAA
* *
61388629 GCTAAAGTGACATGTGAACCTAA
1 GCT-ATGTGATATGTGAACCTAA
*
61388652 GCTATATGATATGTGAAC
1 GCTATGTGATATGTGAAC
61388670 TTATACTAAA
Statistics
Matches: 49, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
22 32 0.65
23 17 0.35
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (22 bp):
GCTATGTGATATGTGAACCTAA
Found at i:61388646 original size:23 final size:23
Alignment explanation
Indices: 61388617--61388683 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
61388607 GCTATATGAT
61388617 ATGTGAACTTATGCTAAAGTGAC
1 ATGTGAACTTATGCTAAAGTGAC
* * * *
61388640 ATGTGAACCTAAGCTATA-TGAT
1 ATGTGAACTTATGCTAAAGTGAC
*
61388662 ATGTGAACTTATACTAAAGTGA
1 ATGTGAACTTATGCTAAAGTGA
61388684 TATGCAAACC
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 17 0.49
23 18 0.51
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (23 bp):
ATGTGAACTTATGCTAAAGTGAC
Found at i:61388715 original size:45 final size:45
Alignment explanation
Indices: 61388593--61388695 Score: 170
Period size: 45 Copynumber: 2.3 Consensus size: 45
61388583 ATGCTATGTT
*
61388593 ATATGCGAACCTAAGCTATATGATATGTGAACTTATGCTAAAGTG
1 ATATGCGAACCTAAGCTATATGATATGTGAACTTATACTAAAGTG
* *
61388638 ACATGTGAACCTAAGCTATATGATATGTGAACTTATACTAAAGTG
1 ATATGCGAACCTAAGCTATATGATATGTGAACTTATACTAAAGTG
*
61388683 ATATGCAAACCTA
1 ATATGCGAACCTA
61388696 GGCTTTGTGA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (45 bp):
ATATGCGAACCTAAGCTATATGATATGTGAACTTATACTAAAGTG
Found at i:61389027 original size:33 final size:33
Alignment explanation
Indices: 61388990--61389056 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
61388980 TATTGCGATG
* *
61388990 AACATTGTGGTCCAGAGATGTGTTGGAGAGATA
1 AACATTATGGTCCAGAGATGTGGTGGAGAGATA
*
61389023 AACATTATGGTCTAGAGATGTGGTGGAGAGATA
1 AACATTATGGTCCAGAGATGTGGTGGAGAGATA
61389056 A
1 A
61389057 GGGAATGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.07, G:0.33, T:0.27
Consensus pattern (33 bp):
AACATTATGGTCCAGAGATGTGGTGGAGAGATA
Found at i:61389335 original size:17 final size:17
Alignment explanation
Indices: 61389296--61389336 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
61389286 TTATGATGTA
*
61389296 GTATGAACTATTATTTT
1 GTATGAACTATTATTTG
* *
61389313 GCATGAACTTTTATTTG
1 GTATGAACTATTATTTG
61389330 GTATGAA
1 GTATGAA
61389337 TTGTTGTTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.46
Consensus pattern (17 bp):
GTATGAACTATTATTTG
Found at i:61389396 original size:18 final size:18
Alignment explanation
Indices: 61389375--61389443 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 18
61389365 TGCGAACTAA
*
61389375 TATTTTATGTGAACTGCC
1 TATTTTATGTGAACTGCT
* *
61389393 TATTTTATGCGAATTGCT
1 TATTTTATGTGAACTGCT
* * * *
61389411 TACTCTATGTGAATTGTT
1 TATTTTATGTGAACTGCT
*
61389429 TATTTTATGGGAACT
1 TATTTTATGTGAACT
61389444 ATAAGTCGTG
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.23, C:0.12, G:0.17, T:0.48
Consensus pattern (18 bp):
TATTTTATGTGAACTGCT
Found at i:61396550 original size:33 final size:32
Alignment explanation
Indices: 61396511--61396575 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
61396501 GTAGTAGTTT
*
61396511 GGGCCTAAG-CCTATTTCAATAACAGTATCAGTG
1 GGGCCTAAGTCC-ATTACAATAACAGTA-CAGTG
*
61396544 GGGCCTAAGTCCATTACAGTAACAGTACAGTG
1 GGGCCTAAGTCCATTACAATAACAGTACAGTG
61396576 TGCAATCAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 5 0.17
33 22 0.76
34 2 0.07
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (32 bp):
GGGCCTAAGTCCATTACAATAACAGTACAGTG
Found at i:61402016 original size:22 final size:23
Alignment explanation
Indices: 61401991--61402033 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
61401981 TATCTCCACA
*
61401991 TGGAGTGTAG-GGCTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
61402013 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
61402034 GTAGGATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.02, G:0.53, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:61404517 original size:21 final size:21
Alignment explanation
Indices: 61404491--61404535 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
61404481 ATGCTTTGAT
61404491 TGATAGTGTGATCGATATCTC
1 TGATAGTGTGATCGATATCTC
61404512 TGATAGTGTGATCGATATCTC
1 TGATAGTGTGATCGATATCTC
61404533 TGA
1 TGA
61404536 CTTCTGATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (21 bp):
TGATAGTGTGATCGATATCTC
Done.