Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 198 of 253
Found at i:65024975 original size:45 final size:45
Alignment explanation
Indices: 65024917--65025227 Score: 270
Period size: 45 Copynumber: 7.0 Consensus size: 45
65024907 CATCAATAAT
* *
65024917 GAACTTGGACCAACTCAATGAGCTCGAATGCTTCAAATATATCAC
1 GAACTCGGACCAACTCAATGAGCTCGAATGCTTCACATATATCAC
* * ** * * * *
65024962 AAACTTGGACCAACTCAACAAGTTCAAAT-TTATTACATATATCAC
1 GAACTCGGACCAACTCAATGAGCTCGAATGCT-TCACATATATCAC
* * * ** * *
65025007 GAACTCGGACCAACTCAACGAGCTCGAATTC-TCGCATCCATAAT
1 GAACTCGGACCAACTCAATGAGCTCGAATGCTTCACATATATCAC
* *
65025051 GAACTCGGACTAACTCAATGAGCTCGGATGCTTCACATATATCAC
1 GAACTCGGACCAACTCAATGAGCTCGAATGCTTCACATATATCAC
* ** * * * *
65025096 GAACTTGGACCAACTCAACAAGTTCAGATTTC-TCACATATATCAT
1 GAACTCGGACCAACTCAATGAGCTC-GAATGCTTCACATATATCAC
* * * ** * *
65025141 GAACTCGGACCAACTCAATAAGCTCGGATGC-TCGCATCCATAAT
1 GAACTCGGACCAACTCAATGAGCTCGAATGCTTCACATATATCAC
*
65025185 GAACTCGGACCAACTCAATGAGCTCGGATGCTTCACATATATC
1 GAACTCGGACCAACTCAATGAGCTCGAATGCTTCACATATATC
65025228 CAAACATTAA
Statistics
Matches: 208, Mismatches: 53, Indels: 10
0.77 0.20 0.04
Matches are distributed among these distances:
44 77 0.37
45 128 0.62
46 3 0.01
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (45 bp):
GAACTCGGACCAACTCAATGAGCTCGAATGCTTCACATATATCAC
Found at i:65025106 original size:89 final size:88
Alignment explanation
Indices: 65024871--65025210 Score: 268
Period size: 89 Copynumber: 3.8 Consensus size: 88
65024861 CGCATCCATT
* * * * * * * * *
65024871 ATGAACTCAGACCGACTCAACAAGCTTGAATGCTCGCATCA-ATAATGAACTTGGACCAACTCAA
1 ATGAACTCGGACCAACTCAATAAGCTCGGATGCTCACAT-ATATCACGAACTCGGACCAACTCAA
* * * * *
65024935 TGAGCTCGAATGCTTCAAATATATC
65 CGAGCTCGAATTC-TCACATACATA
** * * * ** ** *
65024960 ACAAACTTGGACCAACTCAACAAGTTCAAATTTATTACATATATCACGAACTCGGACCAACTCAA
1 ATGAACTCGGACCAACTCAATAAGCTCGGA-TGCTCACATATATCACGAACTCGGACCAACTCAA
* *
65025025 CGAGCTCGAATTCTCGCATCCATA
65 CGAGCTCGAATTCTCACATACATA
* * *
65025049 ATGAACTCGGACTAACTCAATGAGCTCGGATGCTTCACATATATCACGAACTTGGACCAACTCAA
1 ATGAACTCGGACCAACTCAATAAGCTCGGATGC-TCACATATATCACGAACTCGGACCAACTCAA
* * * * *
65025114 CAAGTTCAGATTTCTCACATATATC
65 CGAGCTC-GAATTCTCACATACATA
* ** * * *
65025139 ATGAACTCGGACCAACTCAATAAGCTCGGATGCTCGCATCCATAATGAACTCGGACCAACTCAAT
1 ATGAACTCGGACCAACTCAATAAGCTCGGATGCTCACATATATCACGAACTCGGACCAACTCAAC
65025204 GAGCTCG
66 GAGCTCG
65025211 GATGCTTCAC
Statistics
Matches: 194, Mismatches: 53, Indels: 9
0.76 0.21 0.04
Matches are distributed among these distances:
88 2 0.01
89 113 0.58
90 79 0.41
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.24
Consensus pattern (88 bp):
ATGAACTCGGACCAACTCAATAAGCTCGGATGCTCACATATATCACGAACTCGGACCAACTCAAC
GAGCTCGAATTCTCACATACATA
Found at i:65025113 original size:134 final size:134
Alignment explanation
Indices: 65024873--65025232 Score: 560
Period size: 134 Copynumber: 2.7 Consensus size: 134
65024863 CATCCATTAT
* * * * *
65024873 GAACTCAGACCGACTCAACAAGCTTGAATGCTCGCATCAATAATGAACTTGGACCAACTCAATGA
1 GAACTCGGACCAACTCAACAAGCTCGAATGCTCGCATCCATAATGAACTCGGACCAACTCAATGA
* * *
65024938 GCTCGAATGCTTCAAATATATCACAAACTTGGACCAACTCAACAAGTTCAAATTTATTACATATA
66 GCTCGGATGCTTCACATATATCACAAACTTGGACCAACTCAACAAGTTCAAATTTATCACATATA
65025003 TCAC
131 TCAC
* * *
65025007 GAACTCGGACCAACTCAACGAGCTCGAATTCTCGCATCCATAATGAACTCGGACTAACTCAATGA
1 GAACTCGGACCAACTCAACAAGCTCGAATGCTCGCATCCATAATGAACTCGGACCAACTCAATGA
* * *
65025072 GCTCGGATGCTTCACATATATCACGAACTTGGACCAACTCAACAAGTTCAGATTTCTCACATATA
66 GCTCGGATGCTTCACATATATCACAAACTTGGACCAACTCAACAAGTTCAAATTTATCACATATA
*
65025137 TCAT
131 TCAC
* *
65025141 GAACTCGGACCAACTCAATAAGCTCGGATGCTCGCATCCATAATGAACTCGGACCAACTCAATGA
1 GAACTCGGACCAACTCAACAAGCTCGAATGCTCGCATCCATAATGAACTCGGACCAACTCAATGA
65025206 GCTCGGATGCTTCACATATATC-CAAAC
66 GCTCGGATGCTTCACATATATCACAAAC
65025233 ATTAAAAACA
Statistics
Matches: 205, Mismatches: 21, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
133 4 0.02
134 201 0.98
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.24
Consensus pattern (134 bp):
GAACTCGGACCAACTCAACAAGCTCGAATGCTCGCATCCATAATGAACTCGGACCAACTCAATGA
GCTCGGATGCTTCACATATATCACAAACTTGGACCAACTCAACAAGTTCAAATTTATCACATATA
TCAC
Found at i:65025890 original size:20 final size:18
Alignment explanation
Indices: 65025853--65025903 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
65025843 CTATAGCAAC
65025853 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
65025870 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
65025890 TTACAACTTTACAA
1 TCACAA-TTTACAA
65025904 AATAACCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:65028048 original size:14 final size:15
Alignment explanation
Indices: 65028024--65028052 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
65028014 AATCTTGTGG
65028024 CAAAAAGAAAAAGAA
1 CAAAAAGAAAAAGAA
65028039 CAAAAA-AAAAAGAA
1 CAAAAAGAAAAAGAA
65028053 GAAGAAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (15 bp):
CAAAAAGAAAAAGAA
Found at i:65030998 original size:41 final size:40
Alignment explanation
Indices: 65030928--65031024 Score: 97
Period size: 40 Copynumber: 2.3 Consensus size: 40
65030918 AATAATTCTA
* * *
65030928 CACACTTAGTGTCATCTCAATTAACCGAAGTTA-TCTCAGTATCG
1 CACACTTAGTG-C--CTCAAATAACCGAAGCTAGT-TCA-AATCG
* *
65030972 CACACTTAGTGCCTCAAATAGCCGAAGCTAGTTTAAATCG
1 CACACTTAGTGCCTCAAATAACCGAAGCTAGTTCAAATCG
65031012 CACACTTAGTGCC
1 CACACTTAGTGCC
65031025 AAATACGATT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
40 17 0.36
41 17 0.36
42 1 0.02
43 1 0.02
44 11 0.23
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (40 bp):
CACACTTAGTGCCTCAAATAACCGAAGCTAGTTCAAATCG
Found at i:65037119 original size:19 final size:19
Alignment explanation
Indices: 65037095--65037132 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
65037085 TTGCAATTTA
*
65037095 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
*
65037114 AATTTTTCTTTTATTTTCT
1 AATTTTTATTTTATTTTCT
65037133 TCTGACAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.74
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:65044827 original size:15 final size:15
Alignment explanation
Indices: 65044807--65044837 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
65044797 TTAGATTTGG
65044807 TGAATTTGATGCTCC
1 TGAATTTGATGCTCC
65044822 TGAATTTGATGCTCC
1 TGAATTTGATGCTCC
65044837 T
1 T
65044838 AATCCTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (15 bp):
TGAATTTGATGCTCC
Found at i:65048981 original size:50 final size:50
Alignment explanation
Indices: 65048922--65049037 Score: 196
Period size: 50 Copynumber: 2.3 Consensus size: 50
65048912 CTGAGCTAAA
* *
65048922 TGATCTTGTATATTCGGCCATATAGGTATGTACATATTTGATGTTATATT
1 TGATCTTGTATATTCGGCCATATAGGTATGTACATATGTGATCTTATATT
*
65048972 TGATCTTGTATATTCGGTCATATAGGTATGTACATATGTGATCTTATATT
1 TGATCTTGTATATTCGGCCATATAGGTATGTACATATGTGATCTTATATT
*
65049022 GGATCTTGTATATTCG
1 TGATCTTGTATATTCG
65049038 ACCAGATGAG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.25, C:0.10, G:0.19, T:0.46
Consensus pattern (50 bp):
TGATCTTGTATATTCGGCCATATAGGTATGTACATATGTGATCTTATATT
Found at i:65051936 original size:46 final size:46
Alignment explanation
Indices: 65051883--65052058 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
65051873 CGGTTGAGCA
*
65051883 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
65051929 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
65051976 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
65052022 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65052059 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
45 3 0.03
46 64 0.58
47 29 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:65052039 original size:93 final size:93
Alignment explanation
Indices: 65051880--65052051 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
65051870 GGACGGTTGA
* *
65051880 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
65051945 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
65051973 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
65052038 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
65052052 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65059521 original size:46 final size:46
Alignment explanation
Indices: 65059471--65059646 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
65059461 TGGTTGAGCA
65059471 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
65059517 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
65059562 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
65059610 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65059647 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:65059627 original size:93 final size:93
Alignment explanation
Indices: 65059468--65059639 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
65059458 GGATGGTTGA
* *
65059468 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
65059533 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
65059561 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
65059626 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
65059640 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65069835 original size:17 final size:17
Alignment explanation
Indices: 65069802--65069844 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
65069792 TAAGTTAACT
*
65069802 AATGAATTGATTATTTA
1 AATGAATTGAATATTTA
*
65069819 AATGAATTGAA-ATTTT
1 AATGAATTGAATATTTA
*
65069835 AATTAATTGA
1 AATGAATTGA
65069845 CACGATACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (17 bp):
AATGAATTGAATATTTA
Found at i:65074268 original size:196 final size:196
Alignment explanation
Indices: 65073940--65074317 Score: 521
Period size: 196 Copynumber: 1.9 Consensus size: 196
65073930 ACAACCCGGT
* * * *
65073940 TTAGACCTTAGTCGGAACAGTGGTTTCGGGACCACAAATTTGAGTCAGAAAAATATTTTAATATT
1 TTAGACCCTAGTCAGAACAGTGGTTTCGAGACCAAAAATTTGAGTCAGAAAAATATTTTAATATT
* * * * *
65074005 ATATTCCATGCTTAAAGTATGTGAATTGATATGTGTGAAAGTTTCGTATGAAAATCTTATCGTTT
66 ATATTCCATGCCTAAAGTATGTGAATTGACATGTGTGAAAGTTTCGTATAAAAATCTAAACGTTT
* *
65074070 GTGTGCTCAATTTG-TAAAAAGGACTTAATCACGTAAAATGCAGAAGTGACTTTGTAACAGTCAG
131 GTGTGCTCAATTTGAT-AAAAGGACCTAATCACGTAAAATGCAAAAGTGACTTTGTAACAGTCAG
65074134 GG
195 GG
* *
65074136 TTAGACCCTAGTCAGAATAGTGGTTTCGAGACCAAAAATTTGAGTTAGAAAAATATTTTAATATT
1 TTAGACCCTAGTCAGAACAGTGGTTTCGAGACCAAAAATTTGAGTCAGAAAAATATTTTAATATT
* * **
65074201 ATTTTCCGTGCCTATAA-TATGTGAATT-AGCATGTGTGAATTTTTCGTATAAAAAT-TAAACTG
66 ATATTCCATGCCTA-AAGTATGTGAATTGA-CATGTGTGAAAGTTTCGTATAAAAATCTAAAC-G
* *
65074263 TTTGTGTGCTCAATTTGATAAAAGGACCTAATCGCGTAAAATGTAAAAGTGACTT
128 TTTGTGTGCTCAATTTGATAAAAGGACCTAATCACGTAAAATGCAAAAGTGACTT
65074318 GCTATTTGTT
Statistics
Matches: 159, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
195 4 0.03
196 152 0.96
197 3 0.02
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (196 bp):
TTAGACCCTAGTCAGAACAGTGGTTTCGAGACCAAAAATTTGAGTCAGAAAAATATTTTAATATT
ATATTCCATGCCTAAAGTATGTGAATTGACATGTGTGAAAGTTTCGTATAAAAATCTAAACGTTT
GTGTGCTCAATTTGATAAAAGGACCTAATCACGTAAAATGCAAAAGTGACTTTGTAACAGTCAGG
G
Found at i:65075510 original size:43 final size:44
Alignment explanation
Indices: 65075359--65075517 Score: 177
Period size: 43 Copynumber: 3.7 Consensus size: 44
65075349 TACGTGTTTT
* * *
65075359 CGTGTAAGACCACACCTGGGACATTGGCATCGA-ATTATGATTTA
1 CGTGTAAGACCACATCTAGGACAGTGGCATCGATATT-TGATTTA
*
65075403 CGTGTAAGACCACGTCTAGGAC-GTTGGCATCG-TATTTGATTT-
1 CGTGTAAGACCACATCTAGGACAG-TGGCATCGATATTTGATTTA
65075445 CGTGTAAGACC-CTATCTAGGACAGTGGCATCGATATTTG-TTTA
1 CGTGTAAGACCAC-ATCTAGGACAGTGGCATCGATATTTGATTTA
* * * *
65075488 CATGTAAGACCACGTCTGGGACATTGGCAT
1 CGTGTAAGACCACATCTAGGACAGTGGCAT
65075518 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 30 0.30
43 37 0.37
44 31 0.31
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (44 bp):
CGTGTAAGACCACATCTAGGACAGTGGCATCGATATTTGATTTA
Found at i:65081657 original size:47 final size:47
Alignment explanation
Indices: 65081580--65081690 Score: 116
Period size: 47 Copynumber: 2.4 Consensus size: 47
65081570 GTGTGAATAA
* * * *
65081580 TACCTTGATTTGGCAACTGGCCACGCTATAGGTATTTTGAGG-GAAGT
1 TACCTTGATTTGGCTACGGGCCACGCTATAGGTACTCTG-GGAGAAGT
* * * * * *
65081627 TACCTTGATTTGGCTTCGGGCCATGGTATAGTTGCTCTGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCACGCTATAGGTACTCTGGGAGAAGT
65081674 TACCTTGATTTGGCTAC
1 TACCTTGATTTGGCTAC
65081691 AGGTCATGGT
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
46 2 0.04
47 50 0.96
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCACGCTATAGGTACTCTGGGAGAAGT
Found at i:65086589 original size:46 final size:46
Alignment explanation
Indices: 65086515--65086736 Score: 245
Period size: 46 Copynumber: 4.8 Consensus size: 46
65086505 TATTTGGGCA
65086515 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
65086561 TCTGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
65086608 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
65086654 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAAC-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
65086699 ACCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65086737 GCAGGTTACA
Statistics
Matches: 145, Mismatches: 23, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
43 6 0.04
45 6 0.04
46 99 0.68
47 27 0.19
48 3 0.02
50 4 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:65086670 original size:93 final size:95
Alignment explanation
Indices: 65086511--65086736 Score: 313
Period size: 93 Copynumber: 2.4 Consensus size: 95
65086501 CAGATATTTG
* *
65086511 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGTCTGAACTCGTTGAG
*
65086576 TTGAGTCCAAGTTC-GTGA-GATG-TAACTA
66 TTGAGTCCAAGTTCACTGAGGATGCTAAC-A
*
65086604 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGTCTGAACTCGTTGAG
* *
65086669 TTGAGTCCGAGTTCACTTATGGATGCTAACA
66 TTGAGTCCAAGTTCACTGA-GGATGCTAACA
* *
65086700 --C--CCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65086737 GCAGGTTACA
Statistics
Matches: 121, Mismatches: 8, Indels: 9
0.88 0.06 0.07
Matches are distributed among these distances:
92 34 0.28
93 75 0.62
94 3 0.02
96 5 0.04
97 4 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (95 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGTCTGAACTCGTTGAG
TTGAGTCCAAGTTCACTGAGGATGCTAACA
Found at i:65088342 original size:21 final size:21
Alignment explanation
Indices: 65088318--65088369 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
65088308 AAGCCTTAGT
65088318 ATAACCATCTAAAGTAGCCCA
1 ATAACCATCTAAAGTAGCCCA
*
65088339 ATAATCATCTAAAGTAGCCCA
1 ATAACCATCTAAAGTAGCCCA
* *
65088360 CTAACTATCT
1 ATAACCATCT
65088370 TCAGTATATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (21 bp):
ATAACCATCTAAAGTAGCCCA
Found at i:65089810 original size:29 final size:29
Alignment explanation
Indices: 65089746--65089841 Score: 115
Period size: 29 Copynumber: 3.3 Consensus size: 29
65089736 AAGTCTACAT
* * **
65089746 ACATGCATATGGCCCACTAAG-CTTAATC
1 ACATTCATATGGCCCATTAAGCCCAAATC
*
65089774 TCATTCATATGGCCCATT-AGACCCAAATC
1 ACATTCATATGGCCCATTAAG-CCCAAATC
*
65089803 ACATTCATACGGCCCATTAAGCCCAAATC
1 ACATTCATATGGCCCATTAAGCCCAAATC
65089832 ACATTCATAT
1 ACATTCATAT
65089842 ACATATTTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
27 2 0.04
28 15 0.26
29 38 0.67
30 2 0.04
ACGTcount: A:0.33, C:0.30, G:0.10, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAAGCCCAAATC
Found at i:65097201 original size:17 final size:17
Alignment explanation
Indices: 65097179--65097215 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
65097169 GGACTCACAG
*
65097179 TTTCATTACTAAAGTTA
1 TTTCATTACTAAAATTA
65097196 TTTCATTACTAAAATTA
1 TTTCATTACTAAAATTA
65097213 TTT
1 TTT
65097216 TTAGATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.35, C:0.11, G:0.03, T:0.51
Consensus pattern (17 bp):
TTTCATTACTAAAATTA
Found at i:65097450 original size:28 final size:28
Alignment explanation
Indices: 65097410--65097466 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
65097400 TTAACATCTT
65097410 ATCATTGGTACAATCTAGTTATAGGAAA
1 ATCATTGGTACAATCTAGTTATAGGAAA
65097438 ATCATTGGTACAATCTAGTTATAGGAAA
1 ATCATTGGTACAATCTAGTTATAGGAAA
65097466 A
1 A
65097467 GTTGATGGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.32
Consensus pattern (28 bp):
ATCATTGGTACAATCTAGTTATAGGAAA
Found at i:65101451 original size:36 final size:36
Alignment explanation
Indices: 65101409--65101482 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
65101399 TAAATTGTGT
* *
65101409 TAAAAATATGAAAATGGTTAATTTTAGTTAATTTTA
1 TAAAAATACGAAAATGGTGAATTTTAGTTAATTTTA
65101445 TAAAAATACGAAAATGGTGAATTTTAGTTAATTTTA
1 TAAAAATACGAAAATGGTGAATTTTAGTTAATTTTA
65101481 TA
1 TA
65101483 CTTAATTTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.45, C:0.01, G:0.12, T:0.42
Consensus pattern (36 bp):
TAAAAATACGAAAATGGTGAATTTTAGTTAATTTTA
Found at i:65102791 original size:26 final size:26
Alignment explanation
Indices: 65102762--65102813 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
65102752 CAAGAGATTG
65102762 ATTAATTTAATAAGTATGTATGAGCA
1 ATTAATTTAATAAGTATGTATGAGCA
65102788 ATTAATTTAATAAGTATGTATGAGCA
1 ATTAATTTAATAAGTATGTATGAGCA
65102814 GTAGTTAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.04, G:0.15, T:0.38
Consensus pattern (26 bp):
ATTAATTTAATAAGTATGTATGAGCA
Found at i:65109834 original size:3 final size:3
Alignment explanation
Indices: 65109826--65109864 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
65109816 CTTTTTCTTC
65109826 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
65109865 TAAGAGTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:65118862 original size:48 final size:48
Alignment explanation
Indices: 65118678--65118895 Score: 247
Period size: 48 Copynumber: 4.4 Consensus size: 48
65118668 TAAGATGGTT
* *
65118678 TTAGGTCACGTGTGTAGTACTAAGTGAAGGCTACTATATGTACCAGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTAC--TACGTACCAGATAG
* * * * * *
65118728 TTAGGCCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA--CGTACCAGA-TAG
* * * * * *
65118779 TTCGATCACATTTGTAGTACTAAGTGCAGGCTACTACGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTACCAGATAG
* *
65118827 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTACCAGATAG
65118875 TTAGGTCACGTGTGTAGTACT
1 TTAGGTCACGTGTGTAGTACT
65118896 GCAGGCTACT
Statistics
Matches: 143, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
48 67 0.47
49 7 0.05
50 37 0.26
51 32 0.22
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (48 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTACCAGATAG
Found at i:65118963 original size:143 final size:145
Alignment explanation
Indices: 65118678--65118963 Score: 317
Period size: 143 Copynumber: 2.0 Consensus size: 145
65118668 TAAGATGGTT
* *
65118678 TTAGGTCACGTGTGTAGTACTAAGTGAAGGCTACTATATGTACCAGATAGTTAGGCCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGAAGGCTAC-ATACGTACCAGATAGTTAGGCCACATGTGT
* ***
65118743 AGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCGATCACATTTGTAGTACTAAGTGCAG
65 AGTAC--A-TGCAGGCTACTATGCGTACCAGACAACTTCGATCACAAGGGTAGTACTAAGTGCAG
* *
65118808 GCTACTACGTATCAGATGG
127 GCAACCACGTATCAGATGG
* * * * *
65118827 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTAC-TACGTATCAGATGGTTAGGTCACGTGTGTA
1 TTAGGTCACGTGTGTAGTACTAAGTGAAGGCTACATACGTACCAGATAGTTAGGCCACATGTGTA
* * * * * * *
65118891 GTAC-TGCAGGCTACTATGCGTACTAGATAGCTTCGGTTACAAGGGTGGTAAC-ATGTGCAGGCA
66 GTACATGCAGGCTACTATGCGTACCAGACAACTTCGATCACAAGGGTAGT-ACTAAGTGCAGGCA
*
65118954 ACCATGTATC
130 ACCACGTATC
65118964 GTTATTATTC
Statistics
Matches: 115, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
143 52 0.45
144 2 0.02
147 28 0.24
149 33 0.29
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (145 bp):
TTAGGTCACGTGTGTAGTACTAAGTGAAGGCTACATACGTACCAGATAGTTAGGCCACATGTGTA
GTACATGCAGGCTACTATGCGTACCAGACAACTTCGATCACAAGGGTAGTACTAAGTGCAGGCAA
CCACGTATCAGATGG
Found at i:65126041 original size:15 final size:15
Alignment explanation
Indices: 65126021--65126052 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
65126011 CATTTCACTA
*
65126021 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
65126036 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
65126051 TT
1 TT
65126053 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:65131659 original size:42 final size:42
Alignment explanation
Indices: 65131548--65131744 Score: 232
Period size: 42 Copynumber: 4.7 Consensus size: 42
65131538 CACCATACCA
* * * **
65131548 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAAATCG
* * * *
65131590 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCACATCA
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCAAATCG
* * *
65131633 ATGTCATATCCCAGATATGGTCTTACACGAAGTCTCAAATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAAATCG
** * *
65131675 ATTTCATATCCCAGATATGGTCTTACACGAAGTCTCAAATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAAATCG
*
65131717 ATGACATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
65131745 AGTCTTAGTA
Statistics
Matches: 136, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
42 103 0.76
43 33 0.24
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAAATCG
Found at i:65132663 original size:31 final size:31
Alignment explanation
Indices: 65132620--65132703 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
65132610 TTAGTCTTGA
*
65132620 CATAT-ACTGGGCCAAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
65132650 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
65132681 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
65132704 ACTGTAAACA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:65133029 original size:24 final size:26
Alignment explanation
Indices: 65132966--65133034 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 26
65132956 CTCTTTTAAT
65132966 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTCTGATA
*
65132991 AACTGGGGCAAAGCCCTTTTC-GGTA
1 AACTGGGGCAAAGCCCTTTTCTGATA
*
65133016 AAC-GGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
65133035 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
24 15 0.37
25 22 0.54
26 4 0.10
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTCTGATA
Found at i:65133993 original size:27 final size:27
Alignment explanation
Indices: 65133940--65134176 Score: 170
Period size: 27 Copynumber: 8.7 Consensus size: 27
65133930 TTTCATCCTA
* * * *
65133940 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
65133967 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * ** * *
65133994 CAATGGTTTTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
* ** *
65134023 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * * *
65134050 CAGGGGTATTTTGGTAATTTTAAAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
** * *
65134077 TGAGAGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
65134104 C-AGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * *
65134131 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* *
65134158 TAAGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
65134177 CTATCCTACA
Statistics
Matches: 167, Mismatches: 39, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.01
27 136 0.81
28 15 0.09
29 14 0.08
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:65134137 original size:81 final size:81
Alignment explanation
Indices: 65134027--65134176 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 81
65134017 GAAAGTCAAG
* ** * *
65134027 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTAAAAATTGAGAGTATTTCGGT
1 GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTAAAAACTAAGAGTATTTCGGT
65134092 AATTTCACAAACCAGT
66 AATTTCACAAACCAGT
* * *
65134108 GGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
1 GGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTAAAAACTAAGAGTATTTCGG
65134172 TAATT
65 TAATT
65134177 CTATCCTACA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 1 0.02
81 59 0.98
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTAAAAACTAAGAGTATTTCGGT
AATTTCACAAACCAGT
Found at i:65134190 original size:54 final size:54
Alignment explanation
Indices: 65134082--65134209 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
65134072 AAAATTGAGA
* *
65134082 GTATTTCGGTAATTTCACAAACCAGTGGTATTTCGGTAATTTTACAAACTAGGG
1 GTATTTCGGTAATTTCACAAACAAGTGGTATTTCGGTAATTCTACAAACTAGGG
* * * **
65134136 GTATTTTGGTAATTTTACAAACTAAG-GGTATTTTGGTAATTCTATCCTAC-AGGG
1 GTATTTCGGTAATTTCACAAAC-AAGTGGTATTTCGGTAATTCTA-CAAACTAGGG
* *
65134190 GTATTTCAGTGATTTCACAA
1 GTATTTCGGTAATTTCACAA
65134210 TCGAGGGTAA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
54 56 0.92
55 5 0.08
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (54 bp):
GTATTTCGGTAATTTCACAAACAAGTGGTATTTCGGTAATTCTACAAACTAGGG
Found at i:65134242 original size:27 final size:27
Alignment explanation
Indices: 65134208--65134405 Score: 261
Period size: 27 Copynumber: 7.3 Consensus size: 27
65134198 GTGATTTCAC
*
65134208 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
65134235 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
65134262 AATTGATGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
65134289 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
65134316 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * * *
65134343 AATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
65134370 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
65134397 AATCGAGGG
1 AATCGAGGG
65134406 CATTTCAGTA
Statistics
Matches: 152, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:65134318 original size:81 final size:81
Alignment explanation
Indices: 65134208--65134405 Score: 306
Period size: 81 Copynumber: 2.4 Consensus size: 81
65134198 GTGATTTCAC
* * * * * *
65134208 AATCGAGGGTAAAATGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTTTGTAAATTGATGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
* *
65134273 AAACGGTAATTCTGTA
66 AAACGATAATTCTATA
*
65134289 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
65134354 AAACGATAATTCTATA
66 AAACGATAATTCTATA
*
65134370 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
65134406 CATTTCAGTA
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
AAACGATAATTCTATA
Found at i:65139854 original size:43 final size:43
Alignment explanation
Indices: 65139806--65139921 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
65139796 TGTGGTTACA
* *
65139806 TGTAAGACCATGTCTGGGACATTGGCATTG-T-ATTGATATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTAATTGAT-TT-CG
* *
65139849 TGTAAGATCATGTCTAGGACATTGGCATCGTTAATTGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTAATTGATTTCG
* *
65139892 TGTAAGACCTTGTCTGGGACAATGGCATCG
1 TGTAAGACCATGTCTGGGACATTGGCATCG
65139922 ATATGTGATA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 54 0.86
44 3 0.05
45 6 0.10
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTTAATTGATTTCG
Found at i:65139939 original size:43 final size:42
Alignment explanation
Indices: 65139803--65139942 Score: 138
Period size: 43 Copynumber: 3.3 Consensus size: 42
65139793 AGATGTGGTT
*
65139803 ACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTGATA
1 ACATGTAAGACCATGTCTGGGACATTGGCATCGATATTGATA
** * * * *
65139844 TTATGTGTAAGATCATGTCTAGGACATTGGCATCGTTAATTGATT
1 --ACATGTAAGACCATGTCTGGGACATTGGCATCGAT-ATTGATA
* * * *
65139889 TCGTGTAAGACCTTGTCTGGGACAATGGCATCGATATGTGATA
1 ACATGTAAGACCATGTCTGGGACATTGGCATCGATAT-TGATA
65139932 ACATGTAAGAC
1 ACATGTAAGAC
65139943 TATATCTCAG
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
42 2 0.03
43 69 0.88
44 1 0.01
45 6 0.08
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (42 bp):
ACATGTAAGACCATGTCTGGGACATTGGCATCGATATTGATA
Found at i:65142102 original size:40 final size:40
Alignment explanation
Indices: 65142055--65142199 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
65142045 CTCGCACAAG
* * * * *
65142055 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
65142095 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
65142135 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
65142176 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
65142200 CATTCGATTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.65
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:65143430 original size:38 final size:38
Alignment explanation
Indices: 65143388--65143463 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
65143378 CAAGAACTCC
65143388 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
65143426 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
65143464 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:65155452 original size:51 final size:49
Alignment explanation
Indices: 65155391--65155570 Score: 185
Period size: 51 Copynumber: 3.6 Consensus size: 49
65155381 TAAATGGCAT
*
65155391 GTGTAGTACTAATTGCAGGCTACTATGCGTACTCAATGACTTCGATCACGA
1 GTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGA-TT-GATCACGA
*
65155442 GTGTAGTACTAAGTGCAGGCTACTATGTGTA-TCAGATGA-TGAGGTCACGTA
1 GTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-ATGATTGA--TCACG-A
* *
65155493 -TGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGAATTG-TTGATCAC-A
1 GTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-AA-TGATTGATCACGA
*
65155540 TGTGTAGTACTAAGTTCAGG-TACTATGCGTA
1 -GTGTAGTACTAAGTGCAGGCTACTATGCGTA
65155571 TCGGATAGCT
Statistics
Matches: 113, Mismatches: 6, Indels: 23
0.80 0.04 0.16
Matches are distributed among these distances:
47 1 0.01
48 11 0.10
49 22 0.19
50 39 0.35
51 40 0.35
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (49 bp):
GTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGATTGATCACGA
Found at i:65155504 original size:50 final size:49
Alignment explanation
Indices: 65155392--65155572 Score: 167
Period size: 50 Copynumber: 3.7 Consensus size: 49
65155382 AAATGGCATG
*
65155392 TGTAGTACTAATTGCAGGCTACTATGCGTACTCA-ATGACTTCGA-TCACG-A
1 TGTAGTACTAAGTGCAGGCTACTATGCGTA-TCAGATGA--T-GAGTCACGTA
*
65155442 GTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGATGAGGTCACGTA
1 -TGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATGATGA-GTCACGTA
* * * * * *
65155493 TGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGAATTGTTGA-TCACATG
1 TGTAGTACTAAGTGCAGGCTACTATGCGTATCAG-A-TGATGAGTCACGTA
*
65155542 TGTAGTACTAAGTTCAGG-TACTATGCGTATC
1 TGTAGTACTAAGTGCAGGCTACTATGCGTATC
65155573 GGATAGCTTC
Statistics
Matches: 113, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
48 11 0.10
49 26 0.23
50 38 0.34
51 38 0.34
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATGATGAGTCACGTA
Found at i:65155516 original size:101 final size:98
Alignment explanation
Indices: 65155392--65155572 Score: 242
Period size: 101 Copynumber: 1.8 Consensus size: 98
65155382 AAATGGCATG
* *
65155392 TGTAGTACTAATTGCAGGCTACTATGCGTACTC-AA-TGACTTCGATCACGA-GTGTAGTACTAA
1 TGTAGTACTAAGTGCAGGCTACTACGCGTAC-CGAATTG--TT-GATCAC-ATGTGTAGTACTAA
*
65155454 GTGCAGGCTACTATGTGTATCAGATGATGAGGTCACGTA
61 GTGCAGG-TACTATGCGTATCAGATGATGAGGTCACGTA
* *
65155493 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATTGTTGATCACATGTGTAGTACTAAGTTCA
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCGAATTGTTGATCACATGTGTAGTACTAAGTGCA
65155558 GGTACTATGCGTATC
66 GGTACTATGCGTATC
65155573 GGATAGCTTC
Statistics
Matches: 72, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
98 13 0.18
99 24 0.33
100 3 0.04
101 30 0.42
102 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (98 bp):
TGTAGTACTAAGTGCAGGCTACTACGCGTACCGAATTGTTGATCACATGTGTAGTACTAAGTGCA
GGTACTATGCGTATCAGATGATGAGGTCACGTA
Found at i:65155693 original size:27 final size:26
Alignment explanation
Indices: 65155663--65155714 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
65155653 GGGAAAATCG
65155663 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGT-G-AATATGTGCAAAGTTATT
* *
65155690 ATAAGGTGAATATGTGCAAATTTAT
1 ATAAAGTGAATATGTGCAAAGTTAT
65155715 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (26 bp):
ATAAAGTGAATATGTGCAAAGTTATT
Found at i:65162840 original size:50 final size:50
Alignment explanation
Indices: 65162765--65162951 Score: 178
Period size: 50 Copynumber: 3.5 Consensus size: 50
65162755 TGAATACACG
* *
65162765 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTATTATGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTGTTATGTCGCA
* * * **
65162815 TGTGTAGTACTAAGTGCAGGCTACTACGCCT-TCTGGGGAAGACGTGGGTGATATGTTACA
1 TGTGTAGTACTAAGTGCAGGCTACTACG--TGTAT----CATAC-T--GT--TATGTCGCA
* *
65162875 TGTGTAGTACTAAGTGCTAGGCTACTACGTGTTTCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGC-AGGCTACTACGTGTATCATACTGTTATGTCGCA
65162926 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
65162952 TGATACTCAA
Statistics
Matches: 111, Mismatches: 13, Indels: 26
0.74 0.09 0.17
Matches are distributed among these distances:
50 36 0.32
51 25 0.23
52 1 0.01
53 2 0.02
55 4 0.04
56 4 0.04
58 1 0.01
59 1 0.01
60 26 0.23
61 11 0.10
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTGTTATGTCGCA
Found at i:65167629 original size:27 final size:27
Alignment explanation
Indices: 65167598--65167774 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
65167588 TAAATTGTAC
*
65167598 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
65167625 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
65167651 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
65167679 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
65167707 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
65167733 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
65167760 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65167775 GACTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 23 0.18
27 81 0.64
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:65167744 original size:81 final size:81
Alignment explanation
Indices: 65167599--65167753 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
65167589 AAATTGTACA
* *
65167599 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
65167664 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* *
65167680 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
65167743 GTGCGAGTTGA
64 GTGCGAATTGA
65167754 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 1 0.01
81 41 0.61
82 25 0.37
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:65167765 original size:81 final size:81
Alignment explanation
Indices: 65167595--65167774 Score: 229
Period size: 81 Copynumber: 2.2 Consensus size: 81
65167585 GATTAAATTG
* *
65167595 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
65167660 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
65167676 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
65167739 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
65167757 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
65167775 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 58 0.69
82 25 0.30
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:65171947 original size:46 final size:48
Alignment explanation
Indices: 65171890--65172020 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 48
65171880 ATGGTTGAGC
*
65171890 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
* * *
65171937 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC-AGG
*
65171982 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65172021 GCGGGTTACA
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
43 6 0.09
45 4 0.06
46 29 0.41
47 28 0.40
48 2 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
Found at i:65179727 original size:41 final size:41
Alignment explanation
Indices: 65179673--65179751 Score: 158
Period size: 41 Copynumber: 1.9 Consensus size: 41
65179663 TGTATGTGGT
65179673 CCCATGAGCATTAGTGCCCAAGAAGTTATGATTATTACGTC
1 CCCATGAGCATTAGTGCCCAAGAAGTTATGATTATTACGTC
65179714 CCCATGAGCATTAGTGCCCAAGAAGTTATGATTATTAC
1 CCCATGAGCATTAGTGCCCAAGAAGTTATGATTATTAC
65179752 ATCACTTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (41 bp):
CCCATGAGCATTAGTGCCCAAGAAGTTATGATTATTACGTC
Found at i:65182198 original size:68 final size:67
Alignment explanation
Indices: 65182126--65182279 Score: 161
Period size: 67 Copynumber: 2.3 Consensus size: 67
65182116 CATCATGTGT
* * * * *
65182126 ACAAGAGAGCTACAAGATATTATGATGTAGCTAGGTTGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC-AGATA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
65182189 TGTAG
63 TGTAG
** * *
65182194 ACAAGAGAGCTAC-GGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATG
1 ACAAGAGAGCTACAGATATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATG
65182258 TAG
65 TAG
65182261 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTAC-AGATA
65182280 AATTGGCTAG
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
64 23 0.33
65 3 0.04
66 4 0.06
67 25 0.36
68 13 0.19
69 2 0.03
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (67 bp):
ACAAGAGAGCTACAGATATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGT
AG
Found at i:65185843 original size:15 final size:15
Alignment explanation
Indices: 65185823--65185853 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
65185813 ATTTCACTAC
*
65185823 TATGTCTTTTGTATT
1 TATGTCTTTTATATT
65185838 TATGTCTTTTATATT
1 TATGTCTTTTATATT
65185853 T
1 T
65185854 TGCATGCACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.10, T:0.68
Consensus pattern (15 bp):
TATGTCTTTTATATT
Found at i:65187923 original size:43 final size:43
Alignment explanation
Indices: 65187842--65188055 Score: 311
Period size: 43 Copynumber: 5.0 Consensus size: 43
65187832 GTTAAAATGA
* * * *
65187842 GATATGTGGTTACATGGAAAACCACATCTGGGACGTTGGCATC
1 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
* * * *
65187885 AATATGTGATTACATGTAAGACCATGTCTGTGATGTTGGCATC
1 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
*
65187928 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
*
65187971 GATATGTGATTACTTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
* * *
65188014 GATATGTGATTACATGTAAGACCTCGTCTAGGATGTTGGCAT
1 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
65188056 TGTACGATAT
Statistics
Matches: 153, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 153 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:65189795 original size:27 final size:27
Alignment explanation
Indices: 65189761--65189910 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
65189751 AAAGTACTCC
*
65189761 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
* **
65189788 CAGA-TTACAGAATTACTATTTTACCCT
1 C-GATTTACAAAATTACCGTTTTACCCT
* ** *
65189815 CAATTTTTAAAATTACCGTTTAACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
*
65189842 CGATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
* * **
65189869 CGATTTATAGAATTACTATTTTACCCT
1 CGATTTACAAAATTACCGTTTTACCCT
65189896 CGATTTACAAAATTA
1 CGATTTACAAAATTA
65189911 TTGAAATACA
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.97
28 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.39
Consensus pattern (27 bp):
CGATTTACAAAATTACCGTTTTACCCT
Found at i:65189856 original size:81 final size:81
Alignment explanation
Indices: 65189761--65189910 Score: 230
Period size: 81 Copynumber: 1.9 Consensus size: 81
65189751 AAAGTACTCC
* **
65189761 CGATTTACAGAATTACCGTTTTACCCTCAGA-TTACAGAATTACTATTTTACCCTCAATTTTTAA
1 CGATTTACAAAATTACCGTTTTACCCTC-GATTTACAGAATTACTATTTTACCCTCAATTTACAA
65189825 AATTACCGTTTAACCCT
65 AATTACCGTTTAACCCT
* * *
65189842 CGATTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAA
1 CGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATTTACAAA
65189907 ATTA
66 ATTA
65189911 TTGAAATACA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
80 2 0.03
81 60 0.97
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.39
Consensus pattern (81 bp):
CGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATTTACAAA
ATTACCGTTTAACCCT
Found at i:65190003 original size:27 final size:26
Alignment explanation
Indices: 65189973--65190023 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
65189963 TTAGTTTACC
65189973 AAATCACCAAAATACCCCTAGTTTGTT
1 AAATCACCAAAATACCCC-AGTTTGTT
* * *
65190000 AAATGACTAAAATACCTCAGTTTG
1 AAATCACCAAAATACCCCAGTTTG
65190024 CAAAATTACT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (26 bp):
AAATCACCAAAATACCCCAGTTTGTT
Found at i:65190022 original size:53 final size:53
Alignment explanation
Indices: 65189965--65190068 Score: 120
Period size: 53 Copynumber: 2.0 Consensus size: 53
65189955 AGAATACTTT
* *
65189965 AGTTTACCAAATCACCAAAATACCCCTAG-TTTGTTAAATGACTAAAATACCTC
1 AGTTTACAAAATCACCAAAATA-CCCTAGATTTGTAAAATGACTAAAATACCTC
* * ** * *
65190018 AGTTTGCAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATACC
1 AGTTTACAAAATCACCAAAATACCCTAGATTTGTAAAATGACTAAAATACC
65190069 CTCGACTTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
52 5 0.12
53 37 0.88
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AGTTTACAAAATCACCAAAATACCCTAGATTTGTAAAATGACTAAAATACCTC
Found at i:65190055 original size:27 final size:27
Alignment explanation
Indices: 65189981--65190102 Score: 124
Period size: 27 Copynumber: 4.6 Consensus size: 27
65189971 CCAAATCACC
* * *
65189981 AAAATACCC-CTAGTTTGTTAAATGACT
1 AAAATACCCTCGA-TTTGTAAAATTACT
*
65190008 AAAATA-CCTC-AGTTTGCAAAATTACT
1 AAAATACCCTCGA-TTTGTAAAATTACT
*
65190034 GAAATACCCTCGATTTGTAAAATTACT
1 AAAATACCCTCGATTTGTAAAATTACT
* *
65190061 AAAATACCCTCGACTTGTAAAATTACC
1 AAAATACCCTCGATTTGTAAAATTACT
* *
65190088 AAAGTACCCCCGATT
1 AAAATACCCTCGATT
65190103 CATAGAATTA
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
26 20 0.25
27 60 0.74
28 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATACCCTCGATTTGTAAAATTACT
Found at i:65190165 original size:27 final size:27
Alignment explanation
Indices: 65190150--65190462 Score: 387
Period size: 27 Copynumber: 11.6 Consensus size: 27
65190140 TTGAAATAGA
65190150 CTTGTAGGGTAGAATTACC-AACATACC
1 CTTGTAGGGTAGAATTACCGAA-ATACC
* *
65190177 ATTGTAGGGTAGAATTACCAAAATACC
1 CTTGTAGGGTAGAATTACCGAAATACC
* *
65190204 CCTGTAGGGTAGAATTACTGAAATACC
1 CTTGTAGGGTAGAATTACCGAAATACC
*
65190231 CTTGTAGGGTAGAAATACCGAAATACC
1 CTTGTAGGGTAGAATTACCGAAATACC
* * *
65190258 CTTATAGGGTAGAAATACCGAAATACT
1 CTTGTAGGGTAGAATTACCGAAATACC
* *
65190285 TTTGTAGGGTAGAATTACTGAAATACC
1 CTTGTAGGGTAGAATTACCGAAATACC
* *
65190312 CTTGTAGGGTAGAAATACCAAAATACC
1 CTTGTAGGGTAGAATTACCGAAATACC
* * *
65190339 CTTATAGGGTAGAAATACCGAAATACT
1 CTTGTAGGGTAGAATTACCGAAATACC
* **
65190366 TTTGTAGGGTAGAATTACTAAAATACC
1 CTTGTAGGGTAGAATTACCGAAATACC
* *
65190393 CTTGTAAGGTAGAATTACTG-AATACC
1 CTTGTAGGGTAGAATTACCGAAATACC
* * *
65190419 CCTGTAGTGTAGAATTACTGAAATACC
1 CTTGTAGGGTAGAATTACCGAAATACC
*
65190446 CCTGTAGGGTAGAATTA
1 CTTGTAGGGTAGAATTA
65190463 TCGATAGGGT
Statistics
Matches: 249, Mismatches: 35, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
26 23 0.09
27 224 0.90
28 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (27 bp):
CTTGTAGGGTAGAATTACCGAAATACC
Found at i:65190201 original size:54 final size:53
Alignment explanation
Indices: 65190152--65190624 Score: 493
Period size: 54 Copynumber: 9.0 Consensus size: 53
65190142 GAAATAGACT
* *
65190152 TGTAGGGTAGAATTACCAACATACCATTGTAGGGTAGAATTACCAAAATACCCC
1 TGTAGGGTAGAATTACCAA-ATACCCTTGTAGGGTAGAATTACCGAAATACCCC
* * *
65190206 TGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCT
1 TGTAGGGTAGAATTAC-CAAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
* * ** * *
65190260 TATAGGGTAGAAATACCGAAATACTTTTGTAGGGTAGAATTACTGAAATACCCT
1 TGTAGGGTAGAATTACC-AAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
* * * ***
65190314 TGTAGGGTAGAAATACCAAAATACCCTTATAGGGTAGAAATACCGAAATACTTT
1 TGTAGGGTAGAATTACC-AAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
* * *
65190368 TGTAGGGTAGAATTACTAAAATACCCTTGTAAGGTAGAATTACTG-AATACCCC
1 TGTAGGGTAGAATTAC-CAAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
* * * *
65190421 TGTAGTGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCG----A----
1 TGTAGGGTAGAATTAC-CAAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
* *
65190467 --TAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACC-AAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
*
65190519 TGTAGGGTAGAATTATCGC-AATACCCCTGTAGGGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTA-C-CAAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
* * * *
65190573 TGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTACCGAGATACC
1 TGTAGGGTAGAATTAC-CAAATACCCTTGTAGGGTAGAATTACCGAAATACC
65190625 TTGCGGGGTA
Statistics
Matches: 357, Mismatches: 45, Indels: 34
0.82 0.10 0.08
Matches are distributed among these distances:
44 38 0.11
48 1 0.00
50 1 0.00
53 45 0.13
54 268 0.75
55 3 0.01
56 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (53 bp):
TGTAGGGTAGAATTACCAAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
Found at i:65190220 original size:81 final size:81
Alignment explanation
Indices: 65190135--65190642 Score: 551
Period size: 81 Copynumber: 6.4 Consensus size: 81
65190125 CGATTTACAA
* ** ** *
65190135 AATTATTGAAATAGACTTGTAGGGTAGAATTACC-AACATACCATTGTAGGGTAGAATTACCAAA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAA-ATACCCCTGTAGGGTAGAATTACCGAA
65190199 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * *
65190216 AATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
***
65190281 TACTTTTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
65190297 AATTACTGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCTTATAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
***
65190362 TACTTTTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
65190378 AATTACTAAAATACCCTTGTAAGGTAGAATTACTG-AATACCCCTGTAGTGTAGAATTACTGAAA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
65190442 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
*
65190458 AA-T--T---AT---C--GATAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
1 AATTACTGAAATACCCTTG-TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
65190512 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * **
65190529 AATTA-TCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAA
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
*
65190593 ATACCCCTGTAGGGTGG
65 ATACCCCTGTAGGGTAG
* * ** *
65190610 AATTACCGAGATA-CCTTGCGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
65190643 ATTTTGGCCC
Statistics
Matches: 371, Mismatches: 41, Indels: 31
0.84 0.09 0.07
Matches are distributed among these distances:
69 1 0.00
70 13 0.04
71 46 0.12
72 1 0.00
73 1 0.00
74 2 0.01
77 3 0.01
79 1 0.00
80 56 0.15
81 244 0.66
82 3 0.01
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (81 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:65190505 original size:27 final size:27
Alignment explanation
Indices: 65190467--65190624 Score: 253
Period size: 27 Copynumber: 5.9 Consensus size: 27
65190457 GAATTATCGA
*
65190467 TAGGGTAAAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
65190494 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
65190521 TAGGGTAGAATTATCGCAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
65190548 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
**
65190575 TAGGGTAGAATTACTAAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
65190602 TAGGGTGGAATTACCGAGATACC
1 TAGGGTAGAATTACCGAAATACC
65190625 TTGCGGGGTA
Statistics
Matches: 120, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:65190547 original size:98 final size:97
Alignment explanation
Indices: 65190370--65190560 Score: 285
Period size: 98 Copynumber: 2.0 Consensus size: 97
65190360 AATACTTTTG
* * * * *
65190370 TAGGGTAGAATTACTAAAATACCCTTGTAAGGTAGAATTACTGAATACCCCTGTAGTGTAGAATT
1 TAGGGTAAAATTACCAAAATACCCCTGTAAGGTAGAATTACCGAATACCCCTGTAGGGTAGAATT
65190435 ACTGAAATACCCCTGTAGGGTAGAATTATCGA
66 ACTGAAATACCCCTGTAGGGTAGAATTATCGA
* *
65190467 TAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAT
1 TAGGGTAAAATTACCAAAATACCCCTGTAAGGTAGAATTACCG-AATACCCCTGTAGGGTAGAAT
*
65190532 TA-TCGCAATACCCCTGTAGGGTAGAATTA
65 TACT-GAAATACCCCTGTAGGGTAGAATTA
65190561 CCGAAATACC
Statistics
Matches: 84, Mismatches: 8, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
97 38 0.45
98 46 0.55
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (97 bp):
TAGGGTAAAATTACCAAAATACCCCTGTAAGGTAGAATTACCGAATACCCCTGTAGGGTAGAATT
ACTGAAATACCCCTGTAGGGTAGAATTATCGA
Found at i:65190879 original size:27 final size:26
Alignment explanation
Indices: 65190841--65190920 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
65190831 CGGAGGAAGC
65190841 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
65190868 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * *
65190894 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
65190921 ATTGACCGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.19
27 39 0.81
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:65191045 original size:22 final size:22
Alignment explanation
Indices: 65191011--65191069 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
65191001 CCCGTTATTA
* *
65191011 ATGGCTCTATGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
65191033 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
65191055 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
65191070 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:65191256 original size:27 final size:27
Alignment explanation
Indices: 65191242--65191307 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
65191232 TTTGCCATAT
65191242 TATCTG-ATTCTGGTGGCTCTGCCACAA
1 TATCTGTA-TCTGGTGGCTCTGCCACAA
* * *
65191269 TATCTGTATCTGGTGACTCTGTCACGA
1 TATCTGTATCTGGTGGCTCTGCCACAA
65191296 TATCTGT-TCTGG
1 TATCTGTATCTGG
65191308 CAGCCATGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 5 0.14
27 29 0.83
28 1 0.03
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
TATCTGTATCTGGTGGCTCTGCCACAA
Found at i:65191452 original size:6 final size:6
Alignment explanation
Indices: 65191443--65191543 Score: 102
Period size: 6 Copynumber: 16.8 Consensus size: 6
65191433 CTGTCACGTA
* * *
65191443 ATTCTG ATTCTA ATTCTG -TTACTA ATTCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
65191491 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
65191539 ATTCT
1 ATTCT
65191544 CATTTTGGTT
Statistics
Matches: 81, Mismatches: 6, Indels: 16
0.79 0.06 0.16
Matches are distributed among these distances:
5 7 0.09
6 68 0.84
7 5 0.06
8 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:65191497 original size:24 final size:25
Alignment explanation
Indices: 65191425--65191541 Score: 91
Period size: 24 Copynumber: 4.6 Consensus size: 25
65191415 TGCATTCACT
*
65191425 TTCTGATTCTG-TCACGTAATTCTGA
1 TTCTGATTCTGATTAC-TAATTCTGA
* *
65191450 TTCTAATTCTG-TTACTAATTCTAA
1 TTCTGATTCTGATTACTAATTCTGA
65191474 TTCTGATTCTGATTCTGTTACTAATAT-TGA
1 TTCTGATTCTGA-----TTACTAAT-TCTGA
*
65191504 TTCTGATTCTGATT-CT-GTTACTGA
1 TTCTGATTCTGATTACTAATT-CTGA
65191528 TTCTGATTCTGATT
1 TTCTGATTCTGATT
65191542 CTCATTTTGG
Statistics
Matches: 77, Mismatches: 6, Indels: 19
0.75 0.06 0.19
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 37 0.48
25 15 0.19
30 22 0.29
31 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (25 bp):
TTCTGATTCTGATTACTAATTCTGA
Found at i:65191564 original size:30 final size:30
Alignment explanation
Indices: 65191443--65191543 Score: 159
Period size: 30 Copynumber: 3.4 Consensus size: 30
65191433 CTGTCACGTA
* *
65191443 ATTCTGATTCTAATTCTGTTACTAATTCTA
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
65191473 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
65191503 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
65191533 ATTCTGATTCT
1 ATTCTGATTCT
65191544 CATTTTGGTT
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
29 1 0.02
30 64 0.97
31 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:65206778 original size:30 final size:30
Alignment explanation
Indices: 65206744--65206804 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
65206734 TCCTTAACTC
65206744 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
65206774 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
65206804 A
1 A
65206805 GGCTCAGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:65218915 original size:40 final size:39
Alignment explanation
Indices: 65218747--65219008 Score: 282
Period size: 40 Copynumber: 6.7 Consensus size: 39
65218737 TTGAATGCTG
* * * *
65218747 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-TATAAA
** * * *
65218787 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACAAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATAA-A
*
65218827 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAG-TATAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATAAA
*
65218864 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAA
*
65218904 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAA
*
65218944 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAA
* * *
65218983 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
65219009 AACGAGGAGC
Statistics
Matches: 194, Mismatches: 20, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
37 11 0.06
38 22 0.11
39 55 0.28
40 98 0.51
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATAAA
Found at i:65218953 original size:117 final size:120
Alignment explanation
Indices: 65218747--65219006 Score: 300
Period size: 117 Copynumber: 2.2 Consensus size: 120
65218737 TTGAATGCTG
* *
65218747 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* * *
65218811 TGTGCGAGATACAAGTTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAG-TA-TAAA
66 CGTGCGAGATACAAGATCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* * * * **
65218864 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
65218927 TCGTGCGAGTTATTAA-ATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAGATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
65218983 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
65219007 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
116 1 0.01
117 76 0.63
118 18 0.15
119 25 0.21
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAGATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:65219026 original size:79 final size:80
Alignment explanation
Indices: 65218748--65219041 Score: 228
Period size: 79 Copynumber: 3.7 Consensus size: 80
65218738 TGAATGCTGT
* ** * * * **
65218748 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * **
65218811 TGTGCGAGATAC-AAGTT
64 CGTGCGAGTTACTAA-AA
* * * **
65218828 CCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGT-A-TAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
* *
65218890 TGCGAGTTATTAAAT
66 TGCGAGTTACTAAAA
* ** * *
65218905 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
65218969 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
65218984 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
65219042 TACGTGATTT
Statistics
Matches: 184, Mismatches: 23, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
76 1 0.01
77 43 0.23
78 38 0.21
79 58 0.32
80 44 0.24
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:65226849 original size:43 final size:43
Alignment explanation
Indices: 65226729--65226885 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 43
65226719 TACACATACA
* * *
65226729 ATGCCAATGTCCCAGACGTGGTCTTACATGT-AACCAAATATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATAT-G
* * * * * *
65226772 ATGCCACTATCCTAGATAGGGTCTTACACG-AAATCAAATATG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATATG
* *
65226814 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCATAAGT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCA-AA-TATG
* **
65226858 ATGCCAACGTCCCAGATGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
65226886 CGAGAACACA
Statistics
Matches: 89, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
42 23 0.26
43 38 0.43
44 27 0.30
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATATG
Found at i:65232961 original size:15 final size:15
Alignment explanation
Indices: 65232929--65232957 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
65232919 TTTTTCAATT
65232929 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
65232944 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
65232958 ATTTTCGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:65248717 original size:40 final size:40
Alignment explanation
Indices: 65248554--65248714 Score: 207
Period size: 40 Copynumber: 4.0 Consensus size: 40
65248544 CGCGTCATAA
* * *
65248554 CCAAAGCTATCTCAAATCACACATTAAGTGCCATATGTAG
1 CCAAAGCTATCTCAAATCGCACACTAAGTGCCATATATAG
**
65248594 CCAAAGCTATCTCGATCTCGCA-ACTAAGTGCCATATATAG
1 CCAAAGCTATCTC-AAATCGCACACTAAGTGCCATATATAG
* *
65248634 CCAAAGCTATGTCAAATCTCACACTAAGTGCCATATATAG
1 CCAAAGCTATCTCAAATCGCACACTAAGTGCCATATATAG
** * *
65248674 CTGAAGCTATATCAAATCGCACACTAGGTGCCATATATAG
1 CCAAAGCTATCTCAAATCGCACACTAAGTGCCATATATAG
65248714 C
1 C
65248715 TGATTTGTCA
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
39 5 0.05
40 95 0.90
41 5 0.05
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.25
Consensus pattern (40 bp):
CCAAAGCTATCTCAAATCGCACACTAAGTGCCATATATAG
Found at i:65259941 original size:24 final size:24
Alignment explanation
Indices: 65259896--65259942 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
65259886 AAGTCTGTCA
**
65259896 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
65259920 GGATAGGATTTAGGAGCAGATAA
1 GGATAGGATTTAGGAGCAGATAA
65259943 TGGAGGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.36, T:0.26
Consensus pattern (24 bp):
GGATAGGATTTAGGAGCAGATAAG
Found at i:65261401 original size:27 final size:26
Alignment explanation
Indices: 65261361--65261472 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
65261351 AGGAAGCGTC
*
65261361 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
65261388 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
65261415 ATGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
65261443 CTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
65261469 CTGG
1 CTGG
65261473 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.69
28 15 0.21
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:65262969 original size:43 final size:43
Alignment explanation
Indices: 65262809--65262980 Score: 129
Period size: 43 Copynumber: 4.0 Consensus size: 43
65262799 ACATAGGATC
* *
65262809 CGATATGTG-TTATCATGTAAGACCACATTTAGGACGTTGGCAT
1 CGATATTTGATTA-CATGTAAGACCACATCTAGGACGTTGGCAT
* * ** ** * * **
65262852 CGACT-TATGATTTACGTGTAAGATTATGTCTGGGACATCAGCAT
1 CGA-TATTTGA-TTACATGTAAGACCACATCTAGGACGTTGGCAT
* *
65262896 CG-TATTTGATTTCGTGTAAGACC-CTATCTAGGACAG-TGGCAT
1 CGATATTTGATTACATGTAAGACCAC-ATCTAGGAC-GTTGGCAT
*
65262938 CGATATTTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCAT
65262981 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 24, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
42 26 0.27
43 43 0.45
44 24 0.25
45 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCAT
Found at i:65268531 original size:13 final size:14
Alignment explanation
Indices: 65268513--65268545 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
65268503 AATCAAAAAC
*
65268513 AAACATATCAATA-
1 AAACATATAAATAT
65268526 AAACATATAAATAT
1 AAACATATAAATAT
65268540 AAACAT
1 AAACAT
65268546 GGTCGAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACATATAAATAT
Found at i:65269827 original size:43 final size:43
Alignment explanation
Indices: 65269772--65270063 Score: 239
Period size: 43 Copynumber: 6.9 Consensus size: 43
65269762 ATATCGTACA
* *
65269772 ATGCCAAC-GTCCCAAACGTGGTCTTACATGTAGTCACATATCG
1 ATGCC-ACTGTCCCAAACGTGGTCTTACACGTAATCACATATCG
* * *
65269815 ATGCCACTGTCCCTAACAAT-GTCTTACACG-AATCAAATA-CG
1 ATGCCACTGTCCCAAAC-GTGGTCTTACACGTAATCACATATCG
* * * *
65269856 ATGCTGA-TGTCTCAGACATGGTCTTACACGTAATCACATATCG
1 ATGC-CACTGTCCCAAACGTGGTCTTACACGTAATCACATATCG
* * *
65269899 ATGCCACTGTCCTAGACAG-GGTCTTACACGTAATCACATATTG
1 ATGCCACTGTCCCAAAC-GTGGTCTTACACGTAATCACATATCG
* * *
65269942 ATGCCACTGTCCTAGATA-G-GGTCTTACACG-AATCAAATA-CA
1 ATGCCACTGTCCCA-A-ACGTGGTCTTACACGTAATCACATATCG
* * * *
65269983 ATGTCGA-TGTCCCAAACATGGTTTTACACGTAATTACATATCG
1 ATG-CCACTGTCCCAAACGTGGTCTTACACGTAATCACATATCG
* *
65270026 ATGACAAC-GTCCCAAACGTGGTCTTACATGTAATCACA
1 ATG-CCACTGTCCCAAACGTGGTCTTACACGTAATCACA
65270064 CATCAAAATC
Statistics
Matches: 201, Mismatches: 32, Indels: 32
0.76 0.12 0.12
Matches are distributed among these distances:
39 1 0.00
40 3 0.01
41 42 0.21
42 36 0.18
43 117 0.58
44 1 0.00
45 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCACTGTCCCAAACGTGGTCTTACACGTAATCACATATCG
Found at i:65270002 original size:127 final size:127
Alignment explanation
Indices: 65269776--65270063 Score: 386
Period size: 127 Copynumber: 2.3 Consensus size: 127
65269766 CGTACAATGC
* *
65269776 CAACGTCCCAAACGTGGTCTTACATGTAGTCACATATCGATGCCACTGTCCCTAACAATGTCTTA
1 CAACGTCCCAAACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCTAACAAGGTCTTA
* * *
65269841 CACGAATCAAATACGATGCTGATGTCTCAGACATGGTCTTACACGTAATCACATATCGATG-
66 CACGAATCAAATACAATGCTGATGTCCCAAACATGGTCTTACACGTAATCACATATCGATGA
* * * * * * *
65269902 CCACTGTCCTAGACAG-GGTCTTACACGTAATCACATATTGATGCCACTGT-CCTAGATAGGGTC
1 CAAC-GTCCCAAAC-GTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCTA-ACAAGGTC
* *
65269965 TTACACGAATCAAATACAATG-TCGATGTCCCAAACATGGTTTTACACGTAATTACATATCGATG
63 TTACACGAATCAAATACAATGCT-GATGTCCCAAACATGGTCTTACACGTAATCACATATCGATG
65270029 A
127 A
65270030 CAACGTCCCAAACGTGGTCTTACATGTAATCACA
1 CAACGTCCCAAACGTGGTCTTACATGTAATCACA
65270064 CATCAAAATC
Statistics
Matches: 138, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
126 9 0.07
127 125 0.91
128 4 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (127 bp):
CAACGTCCCAAACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCTAACAAGGTCTTA
CACGAATCAAATACAATGCTGATGTCCCAAACATGGTCTTACACGTAATCACATATCGATGA
Found at i:65273101 original size:32 final size:32
Alignment explanation
Indices: 65273063--65273125 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
65273053 ATGACATATG
*
65273063 TATCCTAACTATTCCTATGATTCATACGGGGT
1 TATCCTAACTATTCCTATGATTCATAAGGGGT
*
65273095 TATCCTAACTATTCTTATGATTCATAAGGGG
1 TATCCTAACTATTCCTATGATTCATAAGGGG
65273126 CTTTTCGGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (32 bp):
TATCCTAACTATTCCTATGATTCATAAGGGGT
Found at i:65275306 original size:24 final size:24
Alignment explanation
Indices: 65275274--65275368 Score: 127
Period size: 24 Copynumber: 4.0 Consensus size: 24
65275264 CTATCAGGAG
*
65275274 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCTGATAAGGGAT
*
65275298 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCTGATAAGGGAT
* ** *
65275322 AGGATTTATGAGCTGATAAGAAAG
1 AGGATTTAGGAGCTGATAAGGGAT
*
65275346 AGGATTTAGGAGCTGATTAGGGA
1 AGGATTTAGGAGCTGATAAGGGA
65275369 GAACAGTGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.35, C:0.02, G:0.36, T:0.27
Consensus pattern (24 bp):
AGGATTTAGGAGCTGATAAGGGAT
Found at i:65276802 original size:27 final size:26
Alignment explanation
Indices: 65276762--65276873 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
65276752 AGAAAGCGTC
*
65276762 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
65276789 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
65276816 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
65276844 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
65276870 CTGG
1 CTGG
65276874 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:65276866 original size:54 final size:54
Alignment explanation
Indices: 65276762--65276873 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
65276752 AGAAAGCGTC
*
65276762 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
65276816 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
65276870 CTGG
1 CTGG
65276874 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:65278372 original size:20 final size:21
Alignment explanation
Indices: 65278347--65278385 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
65278337 CCGAATGTAC
65278347 TTTTCATATACA-CATATAAT
1 TTTTCATATACATCATATAAT
*
65278367 TTTTCATTTACATCATATA
1 TTTTCATATACATCATATA
65278386 TGATTTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTTCATATACATCATATAAT
Found at i:65278724 original size:43 final size:42
Alignment explanation
Indices: 65278557--65278714 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 42
65278547 ATATTGTACA
* * * *
65278557 ATGCCAACGTCCCAAACGTGGTCTTTCATGCTATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* *
65278600 ATGCC-AC-TGCCCTAGACAG-GGTCTTACACGAATTAAATA-CG
1 ATGCCAACGT-CCC-AGAC-GTGGTCTTACACGAATCACATATCG
* * **
65278641 ATGCCGATGTCCCAGATATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCG
*
65278684 ATGCCAACGTCCCATACGTGGTCTTACACGA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA
65278715 GAATACATAT
Statistics
Matches: 91, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
41 22 0.24
42 23 0.25
43 45 0.49
44 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:65292782 original size:17 final size:17
Alignment explanation
Indices: 65292760--65292798 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
65292750 AAGCTGTGTG
65292760 GGCCCTACGGGCTCGTA
1 GGCCCTACGGGCTCGTA
*
65292777 GGCCCTACGGGCTCGTG
1 GGCCCTACGGGCTCGTA
65292794 GGCCC
1 GGCCC
65292799 CACATGGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.08, C:0.38, G:0.38, T:0.15
Consensus pattern (17 bp):
GGCCCTACGGGCTCGTA
Found at i:65304037 original size:43 final size:43
Alignment explanation
Indices: 65303981--65304116 Score: 134
Period size: 43 Copynumber: 3.2 Consensus size: 43
65303971 CTTACCTGTG
* *
65303981 ATCACATATCGATG-CAATTGTCCCAGACAGGGTCTTATACGAA
1 ATCACATAACGATGCCAA-TGTCCCAGACAGGGTCTTACACGAA
* ** * *
65304024 ATCATATAACGATGCCAATGTCCTGGACATGGTCTTACACGGA
1 ATCACATAACGATGCCAATGTCCCAGACAGGGTCTTACACGAA
* * *
65304067 ATCACA-ATACAATGCCAATGTCCCAGACATGGT-TCTACATGAA
1 ATCACATA-ACGATGCCAATGTCCCAGACAGGGTCT-TACACGAA
65304110 ATCACAT
1 ATCACAT
65304117 GTCGCTAATC
Statistics
Matches: 76, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
42 2 0.03
43 71 0.93
44 3 0.04
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
ATCACATAACGATGCCAATGTCCCAGACAGGGTCTTACACGAA
Found at i:65305971 original size:44 final size:41
Alignment explanation
Indices: 65305920--65306042 Score: 156
Period size: 44 Copynumber: 2.9 Consensus size: 41
65305910 CGATATGTGT
*
65305920 TTTCGTGTAAGACCATGTCTAGGACATTGGCATCGACTTATGA
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGA-TT-TGA
* *
65305963 TTTACGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCATGTCTGGGACATTGGCATCG-ATTTGA
* * *
65306006 TTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGAT
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
65306043 ATTTGTTTAC
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 2 0.03
42 27 0.39
43 9 0.13
44 31 0.44
45 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.33
Consensus pattern (41 bp):
TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATTTGA
Found at i:65306026 original size:42 final size:43
Alignment explanation
Indices: 65305923--65306081 Score: 175
Period size: 43 Copynumber: 3.7 Consensus size: 43
65305913 TATGTGTTTT
* * *
65305923 CGTGTAAGACCATGTCTAGGACATTGGCATCG-ACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGATTTA
65305967 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTA
*
65306009 CGTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTG-TTTA
1 CGTGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTGATTTA
* * *
65306052 CATATAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
65306082 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
41 1 0.01
42 31 0.31
43 36 0.36
44 32 0.32
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTA
Found at i:65308883 original size:68 final size:69
Alignment explanation
Indices: 65308811--65308986 Score: 177
Period size: 68 Copynumber: 2.6 Consensus size: 69
65308801 CATCATGTGT
* ** * *
65308811 ACAAGAGAGCTATGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-TAC-AG-GATGTATC-C
1 ACAAGAGAGCTACGAGATA-TAAAT-GTAGCTAGGTCACATGTGTGATTACAAGTGAAGGA-CAC
65308872 CATGTAG
63 CATGTAG
* * *
65308879 ACAAGAGAGCTACGCGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTA--CGAGATATAAATGTAGCTAGGTCACATGTGTGATTACAAGTGAAGGACACC
65308944 ATGTAG
64 ATGTAG
*
65308950 ACAAGAGAGCTACGAG--ATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACATG
65308987 GGTGGTACTA
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
66 13 0.14
67 6 0.07
68 32 0.35
69 9 0.10
70 8 0.09
71 24 0.26
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (69 bp):
ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACATGTGTGATTACAAGTGAAGGACACCAT
GTAG
Found at i:65312320 original size:43 final size:43
Alignment explanation
Indices: 65312259--65312655 Score: 564
Period size: 43 Copynumber: 9.2 Consensus size: 43
65312249 ACATTTTTTA
* *
65312259 GTTGGCATTGATATGTGATTACGTGTAAGACCACGTTTGGGAT
1 GTTGGCATTGATATGTGATTACGTGTAAGACCACGTCTGGGAC
*
65312302 GTTGGCAGTGATATGTGATTACGTGTAAGACCACGTCTGGGAC
1 GTTGGCATTGATATGTGATTACGTGTAAGACCACGTCTGGGAC
*
65312345 GTTGGCATTGATATCTGATTACGTGTAAGACCACGTCTGGGAC
1 GTTGGCATTGATATGTGATTACGTGTAAGACCACGTCTGGGAC
* *
65312388 GTTGGCATTGATATGTGATTACATGTAAGACCACGTTTGGGAC
1 GTTGGCATTGATATGTGATTACGTGTAAGACCACGTCTGGGAC
*
65312431 GTTGGCATTAATATGTGATTACGTGTAAGACCACGTCTGGGAC
1 GTTGGCATTGATATGTGATTACGTGTAAGACCACGTCTGGGAC
** * * *
65312474 GTTGGCATCAATATGTGATTACATGTAAGACCATGTCTAGGAC
1 GTTGGCATTGATATGTGATTACGTGTAAGACCACGTCTGGGAC
* *
65312517 GTTGGCATTGATATGTGATTACGTGTAAGACCACATCTAGGAC
1 GTTGGCATTGATATGTGATTACGTGTAAGACCACGTCTGGGAC
* *
65312560 GTTGGCATTGATATGTGATTAAGTGTAAGACC-CTGTCTGAGAC
1 GTTGGCATTGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC
** * * *
65312603 AG-TGGCATCAATATATGATTACATGTAAGACCACGTTTGGGAC
1 -GTTGGCATTGATATGTGATTACGTGTAAGACCACGTCTGGGAC
*
65312646 ATTGGCATTG
1 GTTGGCATTG
65312656 TACGATATGT
Statistics
Matches: 316, Mismatches: 34, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
42 1 0.00
43 313 0.99
44 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.31
Consensus pattern (43 bp):
GTTGGCATTGATATGTGATTACGTGTAAGACCACGTCTGGGAC
Found at i:65314541 original size:79 final size:81
Alignment explanation
Indices: 65314399--65314583 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
65314389 TTGAATGATG
*
65314399 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
65314463 TGTGCGAGATACTACT-
66 TGTGCGAGATACTA-TA
* * * **
65314479 TCCGGGCTAAG-CCCGAAGGCATTTGTGCT-AGTTACTAAATCTGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
65314541 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
65314558 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65314584 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 2 0.02
79 57 0.62
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:65314590 original size:40 final size:40
Alignment explanation
Indices: 65314400--65314583 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
65314390 TGAATGATGT
* * * *
65314400 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
65314440 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTACT-T
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTA-TAA
*
65314480 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
65314518 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65314559 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
65314584 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
39 31 0.26
40 79 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:65314605 original size:79 final size:79
Alignment explanation
Indices: 65314452--65314616 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
65314442 GGACTAAGAT
* ** *
65314452 CCGAAGGCATTTGTGCGAGATACTACTTCCGGGCTAAGCCCGAAGGCATTTGTGCTAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTACTACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
65314517 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
65314531 CCGAAGGCATTTGTGCGAGTTACTA-TAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTACT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
65314594 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
65314610 CCGAAGG
1 CCGAAGG
65314617 TATGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 49 0.67
80 23 0.32
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTACTACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:65321008 original size:46 final size:46
Alignment explanation
Indices: 65320941--65321157 Score: 281
Period size: 46 Copynumber: 4.7 Consensus size: 46
65320931 TGGCAACCTG
* *
65320941 TGTGTAAGACCATGGTTGAAAGATACCACGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* * * *
65320987 TGTGTAAGACCATGGTTGAAAGATACCAAGACAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
65321033 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** * **
65321079 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* * * *
65321125 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
65321158 TCACGTCAAA
Statistics
Matches: 152, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 152 1.00
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.20
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:65321137 original size:138 final size:130
Alignment explanation
Indices: 65320892--65321147 Score: 350
Period size: 138 Copynumber: 1.9 Consensus size: 130
65320882 AGTGTGCTCT
*
65320892 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
* * ** * *
65320957 TGAAAGATACCACGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCAAGACAAC
66 TGAAAGATACCACGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGATACCAAGACAAC
* *
65321022 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAG
*
65321087 ACCATGGTTGAAAGATACCATGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGA
58 ACCATGGTTGAAAGATACCACGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGA
65321148 CACTATGGCA
Statistics
Matches: 108, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
130 47 0.44
133 2 0.02
136 1 0.01
138 58 0.54
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
TGAAAGATACCACGGCAACATGACAAAAAATGAGTAAGACCATAGTTGAAAGATACCAAGACAAC
Found at i:65321463 original size:23 final size:25
Alignment explanation
Indices: 65321418--65321464 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
65321408 AATAAATATA
*
65321418 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
65321443 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
65321465 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:65325085 original size:21 final size:22
Alignment explanation
Indices: 65325043--65325085 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
65325033 TAAACGAAGT
* *
65325043 ACAATATTATTTAACTACATAA
1 ACAATATAATTTAACTAAATAA
65325065 ACAATATAATTT-ACTAAATAA
1 ACAATATAATTTAACTAAATAA
65325086 TTACATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (22 bp):
ACAATATAATTTAACTAAATAA
Found at i:65328641 original size:61 final size:58
Alignment explanation
Indices: 65328535--65328646 Score: 143
Period size: 61 Copynumber: 1.9 Consensus size: 58
65328525 ATAATATATA
* **
65328535 TAATATAATATATGCATGACTTAAATAAAGCTAAATGGAATATATATGCATAATGCAT
1 TAATATAATATATGCATGACTTAAATAAAGCAAAACAGAATATATATGCATAATGCAT
* **
65328593 TAATATATATATATGCGCATGACTTAAATGAAGCAAAACATTATATATATGCAT
1 TAATATA-ATATAT--GCATGACTTAAATAAAGCAAAACAGAATATATATGCAT
65328647 TAATATTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
58 7 0.16
59 6 0.13
61 32 0.71
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.33
Consensus pattern (58 bp):
TAATATAATATATGCATGACTTAAATAAAGCAAAACAGAATATATATGCATAATGCAT
Found at i:65328656 original size:36 final size:36
Alignment explanation
Indices: 65328616--65328688 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
65328606 TGCGCATGAC
* *
65328616 TTAAATGAAGCAAAACATTATATATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
*
65328652 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
65328688 T
1 T
65328689 ATATATGCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (36 bp):
TTAAATGAAGCAAAACAGTATACATATGCATTAATA
Found at i:65328821 original size:43 final size:41
Alignment explanation
Indices: 65328730--65328866 Score: 140
Period size: 43 Copynumber: 3.4 Consensus size: 41
65328720 GCTAATTATG
** **
65328730 GTATATATATGCAATTATGCATGACTTAAATGAAGTTAAATG
1 GTATATATATGC-ATTATGCATGACTTAAATGAAGCAAAACA
*
65328772 GAATATATATGCATTATGCGCATGACTTAAATGAAGCAAAACA
1 GTATATATATGCATTAT--GCATGACTTAAATGAAGCAAAACA
* *
65328815 TTATATATATGCATTA---AT-A-TTAAATGAAGCTAAACA
1 GTATATATATGCATTATGCATGACTTAAATGAAGCAAAACA
*
65328851 GTATACATATGCATTA
1 GTATATATATGCATTA
65328867 ATATATATAA
Statistics
Matches: 83, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
36 30 0.36
37 1 0.01
38 2 0.02
41 5 0.06
42 11 0.13
43 34 0.41
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (41 bp):
GTATATATATGCATTATGCATGACTTAAATGAAGCAAAACA
Found at i:65328838 original size:36 final size:36
Alignment explanation
Indices: 65328798--65328870 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
65328788 TGCGCATGAC
* *
65328798 TTAAATGAAGCAAAACATTATATATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
*
65328834 TTAAATGAAGCTAAACAGTATACATATGCATTAATA
1 TTAAATGAAGCAAAACAGTATACATATGCATTAATA
65328870 T
1 T
65328871 ATATAAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (36 bp):
TTAAATGAAGCAAAACAGTATACATATGCATTAATA
Found at i:65328933 original size:45 final size:45
Alignment explanation
Indices: 65328872--65328962 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
65328862 CATTAATATA
* **
65328872 TATAAATATGCTTGACTTAAATGAAGTTAAACCTGCTAATAATGG
1 TATAAATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGG
*
65328917 TATATATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGG
1 TATAAATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGG
65328962 T
1 T
65328963 TAATTTAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (45 bp):
TATAAATATGCATGACTTAAATGAAACTAAACCTGCTAATAATGG
Found at i:65329062 original size:16 final size:16
Alignment explanation
Indices: 65329041--65329071 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65329031 CAAGACAGGT
*
65329041 AGAAACATGGAAACTC
1 AGAAACATAGAAACTC
65329057 AGAAACATAGAAACT
1 AGAAACATAGAAACT
65329072 TTGATTAGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.16, G:0.16, T:0.13
Consensus pattern (16 bp):
AGAAACATAGAAACTC
Found at i:65329471 original size:21 final size:22
Alignment explanation
Indices: 65329420--65329472 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
65329410 ACAACTGACA
65329420 GTGGTTGTGGCTTGTGGAACCT
1 GTGGTTGTGGCTTGTGGAACCT
*
65329442 -TGTTTGTGGCTTGTGGAA-CT
1 GTGGTTGTGGCTTGTGGAACCT
*
65329462 GTGGTCGTGGC
1 GTGGTTGTGGC
65329473 CTCGTGGGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.08, C:0.13, G:0.42, T:0.38
Consensus pattern (22 bp):
GTGGTTGTGGCTTGTGGAACCT
Found at i:65329639 original size:35 final size:36
Alignment explanation
Indices: 65329576--65329646 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
65329566 TAAAGAAGAA
65329576 AGGAAAAATTGGGGAAGGGGGTGGGAATTTGGAACG
1 AGGAAAAATTGGGGAAGGGGGTGGGAATTTGGAACG
*
65329612 AGGAAAAATTGGGGGA-GGGGTGGGAATTTGGAACG
1 AGGAAAAATTGGGGAAGGGGGTGGGAATTTGGAACG
65329647 GTAGAAAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 19 0.56
36 15 0.44
ACGTcount: A:0.32, C:0.03, G:0.48, T:0.17
Consensus pattern (36 bp):
AGGAAAAATTGGGGAAGGGGGTGGGAATTTGGAACG
Found at i:65333601 original size:16 final size:17
Alignment explanation
Indices: 65333566--65333620 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
65333556 AAACTTCACT
65333566 AAATGCAAGACATAAATTA
1 AAATGCAA-ACAT-AATTA
65333585 AAATGCAAAC-TAATTA
1 AAATGCAAACATAATTA
* * *
65333601 AACTGAAAACTTAATTA
1 AAATGCAAACATAATTA
65333618 AAA
1 AAA
65333621 GTCTTTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 13 0.41
17 9 0.28
18 2 0.06
19 8 0.25
ACGTcount: A:0.58, C:0.11, G:0.07, T:0.24
Consensus pattern (17 bp):
AAATGCAAACATAATTA
Found at i:65341120 original size:20 final size:19
Alignment explanation
Indices: 65341076--65341121 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
65341066 AACAATAAAG
*
65341076 ATTTTAGCCTTAGCATGTC
1 ATTTTAGCCTTAGCATGTA
65341095 ATTTTAGCCTTAGCATGTTA
1 ATTTTAGCCTTAGCATG-TA
65341115 ATTTTAG
1 ATTTTAG
65341122 AGTTGTGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46
Consensus pattern (19 bp):
ATTTTAGCCTTAGCATGTA
Found at i:65341220 original size:24 final size:24
Alignment explanation
Indices: 65341199--65341254 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
65341189 AAGATTTAGT
*
65341199 ATTTATTAATATAATATATTTAAC
1 ATTTATTAACATAATATATTTAAC
* *
65341223 ATTTATTAGCATAATATATTTGAC
1 ATTTATTAACATAATATATTTAAC
*
65341247 ATTGATTA
1 ATTTATTA
65341255 GAATTAGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.48
Consensus pattern (24 bp):
ATTTATTAACATAATATATTTAAC
Found at i:65341733 original size:16 final size:16
Alignment explanation
Indices: 65341712--65341742 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65341702 AAGAGTAGAC
65341712 AAAAACTTATAAAACT
1 AAAAACTTATAAAACT
*
65341728 AAAAACTTATTAAAC
1 AAAAACTTATAAAAC
65341743 AATGGAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAACTTATAAAACT
Found at i:65343184 original size:3 final size:3
Alignment explanation
Indices: 65343176--65343218 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
65343166 CAATAAAAGG
65343176 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
65343219 TATTTAGATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:65343292 original size:20 final size:20
Alignment explanation
Indices: 65343267--65343305 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65343257 CAAATAAGAA
65343267 AAATATAATAATATAAAAAG
1 AAATATAATAATATAAAAAG
* *
65343287 AAATATTATATTATAAAAA
1 AAATATAATAATATAAAAA
65343306 TTAAATTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (20 bp):
AAATATAATAATATAAAAAG
Found at i:65347277 original size:14 final size:14
Alignment explanation
Indices: 65347260--65347290 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
65347250 GTGTTTTTTG
65347260 AACACATGAATAGC
1 AACACATGAATAGC
65347274 AACACATGAATAGC
1 AACACATGAATAGC
65347288 AAC
1 AAC
65347291 GTCACAGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.23, G:0.13, T:0.13
Consensus pattern (14 bp):
AACACATGAATAGC
Found at i:65348299 original size:3 final size:3
Alignment explanation
Indices: 65348293--65348317 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
65348283 CTACTATATC
65348293 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
65348318 TTATTTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:65355323 original size:93 final size:93
Alignment explanation
Indices: 65355211--65355381 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
65355201 CCCATAAGTG
* *
65355211 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
65355276 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* *
65355304 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
65355369 GAGTTCGGATGCC
66 GAGCTCGGATGCC
65355382 CAAACATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:65355377 original size:46 final size:46
Alignment explanation
Indices: 65355202--65355377 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
65355192 TGTAACCCGC
* * *
65355202 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
65355248 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
65355298 CTC-TCA---AACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
65355341 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
65355378 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 9 0.08
44 1 0.01
46 64 0.58
47 27 0.24
49 1 0.01
50 7 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Done.