Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 201 of 253
Found at i:65999008 original size:35 final size:35
Alignment explanation
Indices: 65998961--65999051 Score: 127
Period size: 35 Copynumber: 2.6 Consensus size: 35
65998951 ATTTTAAATG
65998961 TTTTATAATATTATTTTTTAAAA-TTTT-AAATATAT
1 TTTTA-AATATTATTTTTTAAAATTTTTAAAAT-TAT
65998996 TTTTAAATTATTATTTTTTAAAATTTTTAAAATTAT
1 TTTTAAA-TATTATTTTTTAAAATTTTTAAAATTAT
65999032 TTTTAAA-ATT-TTTTTTAAAA
1 TTTTAAATATTATTTTTTAAAA
65999052 AAATTTAATA
Statistics
Matches: 53, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
33 10 0.19
34 5 0.09
35 20 0.38
36 14 0.26
37 4 0.08
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (35 bp):
TTTTAAATATTATTTTTTAAAATTTTTAAAATTAT
Found at i:65999051 original size:24 final size:22
Alignment explanation
Indices: 65998994--65999044 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 22
65998984 TTTTAAATAT
65998994 ATTTTTAAATTATTATTTTTTAAA
1 ATTTTTAAA--ATTATTTTTTAAA
65999018 ATTTTTAAAATTA-TTTTTAAA
1 ATTTTTAAAATTATTTTTTAAA
65999039 ATTTTT
1 ATTTTT
65999045 TTTAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.52
22 4 0.15
24 9 0.33
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTTTTAAAATTATTTTTTAAA
Found at i:65999052 original size:13 final size:12
Alignment explanation
Indices: 65998984--65999051 Score: 70
Period size: 12 Copynumber: 5.7 Consensus size: 12
65998974 TTTTTTAAAA
65998984 TTTT-AAATATAT
1 TTTTAAAAT-TAT
65998996 TTTTAAATTATTAT
1 TTTTAAA--ATTAT
*
65999010 TTTTTAAA--AT
1 TTTTAAAATTAT
65999020 TTTTAAAATTAT
1 TTTTAAAATTAT
*
65999032 TTTTAAAATTTT
1 TTTTAAAATTAT
65999044 TTTTAAAA
1 TTTTAAAA
65999052 AAATTTAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
10 9 0.19
12 26 0.54
13 2 0.04
14 9 0.19
15 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTAAAATTAT
Found at i:65999171 original size:22 final size:20
Alignment explanation
Indices: 65999113--65999224 Score: 93
Period size: 22 Copynumber: 5.2 Consensus size: 20
65999103 TTTCAAATTT
65999113 ATTATTTTTTTATAATATTTTAA
1 ATTA-TTTTTTA-AA-ATTTTAA
*
65999136 ATGTATATTTTAAAATTTTAAAA
1 AT-TATTTTTTAAAATTTT--AA
65999159 ATTATTTTTTAAAATTTTAA
1 ATTATTTTTTAAAATTTTAA
65999179 A-TATTTTTTAAAATTATTTTAAA
1 ATTATTTTTT-AAA--ATTTT-AA
*
65999202 ATTA-TTTTTAAATATTTTCA
1 ATTATTTTTTAAA-ATTTTAA
65999222 ATT
1 ATT
65999225 TTTAAAAAAA
Statistics
Matches: 78, Mismatches: 3, Indels: 19
0.78 0.03 0.19
Matches are distributed among these distances:
19 8 0.10
20 10 0.13
21 11 0.14
22 25 0.32
23 20 0.26
24 4 0.05
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (20 bp):
ATTATTTTTTAAAATTTTAA
Found at i:65999176 original size:43 final size:44
Alignment explanation
Indices: 65999113--65999219 Score: 132
Period size: 43 Copynumber: 2.4 Consensus size: 44
65999103 TTTCAAATTT
65999113 ATTATTTTTTTATAATATTTTAAATGTATATTTTAAAA-T-TTTAAAA
1 ATTA-TTTTTTA-AATATTTTAAA--TATATTTTAAAATTATTTAAAA
* *
65999159 ATTATTTTTTAAA-ATTTTAAATATTTTTTAAAATTATTTTAAA
1 ATTATTTTTTAAATATTTTAAATATATTTTAAAATTATTTAAAA
65999202 ATTA-TTTTTAAATATTTT
1 ATTATTTTTTAAATATTTT
65999220 CAATTTTTAA
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
41 11 0.20
42 9 0.16
43 23 0.41
44 2 0.04
45 7 0.12
46 4 0.07
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (44 bp):
ATTATTTTTTAAATATTTTAAATATATTTTAAAATTATTTAAAA
Found at i:65999235 original size:43 final size:43
Alignment explanation
Indices: 65999150--65999248 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
65999140 ATATTTTAAA
**
65999150 ATTTTAAAAATTATTTTTTAAAATTTTAAATATTTTTTAAAATT
1 ATTTT-AAAATTATTTTTTAAAATTTTAAATATTTTAAAAAATT
*
65999194 ATTTTAAAATTA-TTTTTAAATATTTTCAAT-TTTTAAAAAAATT
1 ATTTTAAAATTATTTTTTAAA-ATTTTAAATATTTT-AAAAAATT
65999237 ATATTTAAAATT
1 AT-TTTAAAATT
65999249 TTAAAAATAA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
42 12 0.24
43 23 0.47
44 14 0.29
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (43 bp):
ATTTTAAAATTATTTTTTAAAATTTTAAATATTTTAAAAAATT
Found at i:65999327 original size:24 final size:25
Alignment explanation
Indices: 65999281--65999328 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
65999271 TTTTCCTTTA
* *
65999281 TTTTTTATTTGTTTATTATTATTTG
1 TTTTTAATTTGTTTATTAATATTTG
*
65999306 TTTTTAATTTTTTTA-TAATATTT
1 TTTTTAATTTGTTTATTAATATTT
65999329 TAAGTATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (25 bp):
TTTTTAATTTGTTTATTAATATTTG
Found at i:65999538 original size:22 final size:22
Alignment explanation
Indices: 65999513--65999559 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
65999503 ACAGAGGACC
*
65999513 AAAAAATAAA-AAATAAAA-GTG
1 AAAAAA-AAAGAAAAAAAAGGTG
65999534 AAAAAAAAAGAAAAAAAAGGTG
1 AAAAAAAAAGAAAAAAAAGGTG
65999556 AAAA
1 AAAA
65999560 TTGAATTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 3 0.13
21 13 0.57
22 7 0.30
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.09
Consensus pattern (22 bp):
AAAAAAAAAGAAAAAAAAGGTG
Found at i:66008056 original size:41 final size:41
Alignment explanation
Indices: 66008009--66008268 Score: 380
Period size: 41 Copynumber: 6.4 Consensus size: 41
66007999 GTTTTATCAA
* * * * *
66008009 AAAACGCCGCTAAAAA-TAGAGCAATAGCGGTGTTTTTTGTT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCG-CTTTTGGT
*
66008050 AAAACGCCACTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
**
66008090 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGAA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
*
66008131 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
66008172 AAAACGCCGCTAAAAACCAGAGCATTAGCTGCGCTTTTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
66008213 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
66008254 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
66008269 GTCATATAAT
Statistics
Matches: 202, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 21 0.10
41 181 0.90
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:66008382 original size:21 final size:22
Alignment explanation
Indices: 66008356--66008396 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
66008346 AAATCCTAAA
66008356 AACCCCT-AAACACTAAACTAT
1 AACCCCTAAAACACTAAACTAT
*
66008377 AACCCCTAAAACCCTAAACT
1 AACCCCTAAAACACTAAACT
66008397 CCAAAAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.17
Consensus pattern (22 bp):
AACCCCTAAAACACTAAACTAT
Found at i:66009802 original size:13 final size:13
Alignment explanation
Indices: 66009784--66009817 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
66009774 ATTGGAACGT
*
66009784 CTAAAATTTCCCC
1 CTAAAATCTCCCC
66009797 CTAAAATCTCCCC
1 CTAAAATCTCCCC
66009810 CTAAAATC
1 CTAAAATC
66009818 GGTATCCCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (13 bp):
CTAAAATCTCCCC
Found at i:66009865 original size:14 final size:14
Alignment explanation
Indices: 66009846--66009875 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
66009836 CTAATTTTTC
66009846 CCCCAAATCAAAAT
1 CCCCAAATCAAAAT
66009860 CCCCAAATCAAAAT
1 CCCCAAATCAAAAT
66009874 CC
1 CC
66009876 TTCCACCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.40, G:0.00, T:0.13
Consensus pattern (14 bp):
CCCCAAATCAAAAT
Found at i:66009962 original size:14 final size:14
Alignment explanation
Indices: 66009943--66009972 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
66009933 ATTTCTTGCT
66009943 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
66009957 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
66009971 TC
1 TC
66009973 CCTTTGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.37, G:0.00, T:0.37
Consensus pattern (14 bp):
TCTCTAAATCTCCA
Found at i:66012600 original size:5 final size:5
Alignment explanation
Indices: 66012586--66012615 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
66012576 ACGTGGTAAT
*
66012586 TTTAA ATTAA TTTAA TTTAA TTTAA TTTAA
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA
66012616 CTAATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TTTAA
Found at i:66014111 original size:19 final size:19
Alignment explanation
Indices: 66014088--66014134 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
66014078 ATTTAATCTA
*
66014088 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
66014106 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
66014126 ATTTTTATT
1 ATTTTTATT
66014135 TTAATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:66014177 original size:20 final size:20
Alignment explanation
Indices: 66014152--66014196 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
66014142 GATAATGAAT
66014152 TTTAATAGAAAATTTTTATA
1 TTTAATAGAAAATTTTTATA
66014172 TTTAATAGAAAATTTTTATA
1 TTTAATAGAAAATTTTTATA
66014192 TTTAA
1 TTTAA
66014197 ATCATGGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (20 bp):
TTTAATAGAAAATTTTTATA
Found at i:66014651 original size:23 final size:23
Alignment explanation
Indices: 66014603--66014661 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 23
66014593 CTATTCGGGC
*
66014603 TAAACAGGAAACTCATAAGAGTT
1 TAAACAGGAAACTCATAAGAGCT
* *
66014626 TAAATCAGGAAGCTCAT-TGAGCT
1 TAAA-CAGGAAACTCATAAGAGCT
*
66014649 T-AACAGGTAACTC
1 TAAACAGGAAACTC
66014662 CGAAGAGTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 8 0.27
22 2 0.07
23 9 0.30
24 11 0.37
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24
Consensus pattern (23 bp):
TAAACAGGAAACTCATAAGAGCT
Found at i:66016061 original size:13 final size:14
Alignment explanation
Indices: 66016037--66016072 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
66016027 GTGTTTGAAT
66016037 ATATTT-AAAAATA
1 ATATTTAAAAAATA
66016050 AT-TTTAAAAAATA
1 ATATTTAAAAAATA
66016063 ATATTTAAAA
1 ATATTTAAAA
66016073 TTTTAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 3 0.14
13 11 0.52
14 7 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATTTAAAAAATA
Found at i:66016077 original size:22 final size:21
Alignment explanation
Indices: 66016049--66016106 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
66016039 ATTTAAAAAT
*
66016049 AATTTTAAAAAATAATATTTAA
1 AATTTTAAAAAATAAT-TCTAA
* *
66016071 AATTTTAAAATATACTTCTAA
1 AATTTTAAAAAATAATTCTAA
* *
66016092 AATATTATAAAATAA
1 AATTTTAAAAAATAA
66016107 ATAATAAATT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (21 bp):
AATTTTAAAAAATAATTCTAA
Found at i:66016194 original size:21 final size:21
Alignment explanation
Indices: 66016168--66016286 Score: 116
Period size: 21 Copynumber: 5.5 Consensus size: 21
66016158 TATAATATTA
*
66016168 AAAAATAATATTTAAAATTTC
1 AAAAATAATATTTAAAATTTT
*
66016189 AAAAATAATATTTAAATTTTTT
1 AAAAATAATATTTAAA-ATTTT
66016211 AAAAAT-ATATTTAAAATTTT
1 AAAAATAATATTTAAAATTTT
* *
66016231 TAAAATAATATTATAAAACATTT
1 AAAAATAATATT-TAAAA-TTTT
*
66016254 -AAAATATACATTTAAAATATTAT
1 AAAAATA-ATATTTAAAAT-TT-T
*
66016277 AAAACTAATA
1 AAAAATAATA
66016287 ATAAACAAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
20 9 0.11
21 30 0.37
22 27 0.33
23 10 0.12
24 5 0.06
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAATAATATTTAAAATTTT
Found at i:66016223 original size:42 final size:43
Alignment explanation
Indices: 66016168--66016271 Score: 129
Period size: 42 Copynumber: 2.4 Consensus size: 43
66016158 TATAATATTA
***
66016168 AAAAATAATATTTAAAATTTCAAAAATAATATT-TAAATTTTTT
1 AAAAAT-ATATTTAAAATTTCAAAAATAATATTATAAAACATTT
**
66016211 AAAAATATATTTAAAATTTTTAAAATAATATTATAAAACATTT
1 AAAAATATATTTAAAATTTCAAAAATAATATTATAAAACATTT
*
66016254 AAAATATACATTTAAAAT
1 AAAA-ATATATTTAAAAT
66016272 ATTATAAAAC
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
42 24 0.45
43 17 0.32
44 12 0.23
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (43 bp):
AAAAATATATTTAAAATTTCAAAAATAATATTATAAAACATTT
Found at i:66016264 original size:13 final size:13
Alignment explanation
Indices: 66016248--66016273 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66016238 ATATTATAAA
66016248 ACATTTAAAATAT
1 ACATTTAAAATAT
66016261 ACATTTAAAATAT
1 ACATTTAAAATAT
66016274 TATAAAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATTTAAAATAT
Found at i:66016303 original size:24 final size:24
Alignment explanation
Indices: 66016275--66016327 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
66016265 TTAAAATATT
*
66016275 ATAAAACTAATAATAA-ACAAATAA
1 ATAAAACAAATAA-AAGACAAATAA
66016299 ATAAAACAAATAAAAGACAAATAA
1 ATAAAACAAATAAAAGACAAATAA
66016323 A-AAAA
1 ATAAAA
66016328 TATTGAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.75, C:0.08, G:0.02, T:0.15
Consensus pattern (24 bp):
ATAAAACAAATAAAAGACAAATAA
Found at i:66016307 original size:13 final size:13
Alignment explanation
Indices: 66016275--66016312 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
66016265 TTAAAATATT
*
66016275 ATAAAACTAAT-A
1 ATAAAACAAATAA
66016287 AT-AAACAAATAA
1 ATAAAACAAATAA
66016299 ATAAAACAAATAA
1 ATAAAACAAATAA
66016312 A
1 A
66016313 AGACAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 7 0.30
12 5 0.22
13 11 0.48
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (13 bp):
ATAAAACAAATAA
Found at i:66016326 original size:13 final size:12
Alignment explanation
Indices: 66016289--66016364 Score: 57
Period size: 11 Copynumber: 6.2 Consensus size: 12
66016279 AACTAATAAT
66016289 AAACAAATAAATA
1 AAACAAATAAA-A
66016302 AAACAAAT-AAA
1 AAACAAATAAAA
*
66016313 AGACAAATAAAA
1 AAACAAATAAAA
* * *
66016325 AAA-TATTGAAA
1 AAACAAATAAAA
*
66016336 AAATAAATAAAGAA
1 AAACAAAT-AA-AA
66016350 AAACAAAATAAAA
1 AAAC-AAATAAAA
66016363 AA
1 AA
66016365 CGAAAAAGGA
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
11 16 0.33
12 9 0.18
13 13 0.27
14 7 0.14
15 4 0.08
ACGTcount: A:0.78, C:0.05, G:0.04, T:0.13
Consensus pattern (12 bp):
AAACAAATAAAA
Found at i:66016357 original size:19 final size:19
Alignment explanation
Indices: 66016335--66016371 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
66016325 AAATATTGAA
66016335 AAAATAAATAAA-GAAAAAC
1 AAAATAAA-AAACGAAAAAC
66016354 AAAATAAAAAACGAAAAA
1 AAAATAAAAAACGAAAAA
66016372 GGACAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.81, C:0.05, G:0.05, T:0.08
Consensus pattern (19 bp):
AAAATAAAAAACGAAAAAC
Found at i:66017402 original size:43 final size:43
Alignment explanation
Indices: 66017341--66017426 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
66017331 AAATGCTGTA
66017341 AATGTTTTATTAACATTTAGTTATAAAATACTTCTACAGATAC
1 AATGTTTTATTAACATTTAGTTATAAAATACTTCTACAGATAC
66017384 AATGTTTTATTAACATTTAGTTATAAAATACTTCTACAGATAC
1 AATGTTTTATTAACATTTAGTTATAAAATACTTCTACAGATAC
66017427 TATCTTGTTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.42
Consensus pattern (43 bp):
AATGTTTTATTAACATTTAGTTATAAAATACTTCTACAGATAC
Found at i:66020349 original size:17 final size:17
Alignment explanation
Indices: 66020327--66020361 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
66020317 TTCAAGGTAA
66020327 ATTTGTTATTTTTTTTT
1 ATTTGTTATTTTTTTTT
66020344 ATTTGTTATTTTTTTTT
1 ATTTGTTATTTTTTTTT
66020361 A
1 A
66020362 CTGAAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.14, C:0.00, G:0.06, T:0.80
Consensus pattern (17 bp):
ATTTGTTATTTTTTTTT
Found at i:66023030 original size:3 final size:3
Alignment explanation
Indices: 66023022--66023065 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
66023012 GTAGTTTCTG
66023022 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
66023066 TCTAGTTCTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:66023158 original size:25 final size:26
Alignment explanation
Indices: 66023110--66023167 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
66023100 GTTGTTTTAT
* * *
66023110 ATTTTTATAATTTTATATATATTTCA
1 ATTTTTTTAATTTTAAAGATATTTCA
*
66023136 ATTTTTTTAATTTTAAAGA-ATTTTA
1 ATTTTTTTAATTTTAAAGATATTTCA
66023161 ATTTTTT
1 ATTTTTT
66023168 AAAATAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 12 0.43
26 16 0.57
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (26 bp):
ATTTTTTTAATTTTAAAGATATTTCA
Found at i:66024086 original size:15 final size:16
Alignment explanation
Indices: 66024058--66024090 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
66024048 ATATTTTATC
*
66024058 TATTTTTTGGATTTTT
1 TATTTTTTGAATTTTT
66024074 TATTTTTT-AATTTTT
1 TATTTTTTGAATTTTT
66024089 TA
1 TA
66024091 CAATTGACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (16 bp):
TATTTTTTGAATTTTT
Found at i:66026062 original size:21 final size:21
Alignment explanation
Indices: 66025997--66026067 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
66025987 AATCAAGCTT
*
66025997 AATATTATTATATTGATAATAA
1 AATATTATTATATTAAT-ATAA
* *
66026019 AAT-TTATTTTTATTATTA-AA
1 AATATTA-TTATATTAATATAA
*
66026039 AATATTAATATATTAATATAA
1 AATATTATTATATTAATATAA
66026060 AATATTAT
1 AATATTAT
66026068 ATTTTTCAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
20 13 0.33
21 16 0.41
22 10 0.26
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (21 bp):
AATATTATTATATTAATATAA
Found at i:66027665 original size:42 final size:43
Alignment explanation
Indices: 66027609--66027692 Score: 116
Period size: 44 Copynumber: 2.0 Consensus size: 43
66027599 ATATATATGA
* * *
66027609 AGCATCTGAGCTCGTTGAA-GGTCCGAGTTCATTATGGATGTG
1 AGCATCCGAACTCGTTGAATGGTCCGAGTTCATAATGGATGTG
*
66027651 AGCATCCGAACTCGTTGAATTGGTCTGAGTTCATAATGGATG
1 AGCATCCGAACTCGTTGAA-TGGTCCGAGTTCATAATGGATG
66027693 CGATACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 17 0.47
44 19 0.53
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (43 bp):
AGCATCCGAACTCGTTGAATGGTCCGAGTTCATAATGGATGTG
Found at i:66033914 original size:19 final size:19
Alignment explanation
Indices: 66033874--66033927 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
66033864 TATAATAGTT
* *
66033874 AAAATAAATAAAGAAAATA
1 AAAAGAAATAAAGAAAAGA
66033893 AAAAGAAATAAA-ATAAAGA
1 AAAAGAAATAAAGA-AAAGA
*
66033912 AAAAGGAAAGAAAGAA
1 AAAA-GAAATAAAGAA
66033928 GGACGAAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 1 0.03
19 19 0.66
20 8 0.28
21 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (19 bp):
AAAAGAAATAAAGAAAAGA
Found at i:66040867 original size:17 final size:18
Alignment explanation
Indices: 66040847--66040896 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 18
66040837 GTTTACTTAT
*
66040847 ATTATAAGTA-AATAATA
1 ATTATAAATATAATAATA
66040864 ATTACTAAAATATAATAATA
1 ATTA-T-AAATATAATAATA
66040884 A-TAT-AATATAATA
1 ATTATAAATATAATA
66040897 GTTAAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 9 0.31
17 4 0.14
18 2 0.07
19 6 0.21
20 8 0.28
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
ATTATAAATATAATAATA
Found at i:66040961 original size:4 final size:4
Alignment explanation
Indices: 66040952--66040999 Score: 50
Period size: 4 Copynumber: 13.0 Consensus size: 4
66040942 ACAGAACAGG
* *
66040952 GAAA GAAA GAAA GAAA GAAA GAAA -AAA -AAG GGAA -AAA -AAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
66040996 GAAA
1 GAAA
66041000 AAATAGGGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 10 0.26
4 28 0.74
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:66040969 original size:12 final size:11
Alignment explanation
Indices: 66040952--66041002 Score: 52
Period size: 10 Copynumber: 4.6 Consensus size: 11
66040942 ACAGAACAGG
66040952 GAAAGAAAGAAA
1 GAAA-AAAGAAA
66040964 GAAAGAAAGAAA
1 GAAA-AAAGAAA
* *
66040976 -AAAAAGGGAA
1 GAAAAAAGAAA
66040986 -AAAAAAGAAA
1 GAAAAAAGAAA
66040996 GAAAAAA
1 GAAAAAA
66041003 TAGGGTTTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
10 13 0.38
11 9 0.26
12 12 0.35
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (11 bp):
GAAAAAAGAAA
Found at i:66041410 original size:6 final size:6
Alignment explanation
Indices: 66041399--66041437 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
66041389 TATGTACCAC
* *
66041399 TACTGT TACTGT TACTGT TACTGT TACTAT TTCTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
66041438 GGTGTACTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (6 bp):
TACTGT
Found at i:66044904 original size:20 final size:21
Alignment explanation
Indices: 66044879--66044917 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
66044869 ATTCAATCGA
66044879 AGATAATTA-ATTATTTAACT
1 AGATAATTAGATTATTTAACT
*
66044899 AGATAATTAGTTTATTTAA
1 AGATAATTAGATTATTTAA
66044918 TCGATTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.46
Consensus pattern (21 bp):
AGATAATTAGATTATTTAACT
Found at i:66060523 original size:21 final size:21
Alignment explanation
Indices: 66060499--66060539 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
66060489 TGAGAAAGGT
66060499 TTGTAGTTAATGTGAAATTGC
1 TTGTAGTTAATGTGAAATTGC
66060520 TTGTAGTTAATGTGAAATTG
1 TTGTAGTTAATGTGAAATTG
66060540 GTTGATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.02, G:0.24, T:0.44
Consensus pattern (21 bp):
TTGTAGTTAATGTGAAATTGC
Found at i:66060574 original size:17 final size:18
Alignment explanation
Indices: 66060542--66060575 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
66060532 TGAAATTGGT
66060542 TGATTTATACTTATTTAA
1 TGATTTATACTTATTTAA
*
66060560 TGATTTA-AGTTATTTA
1 TGATTTATACTTATTTA
66060576 CATACGAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (18 bp):
TGATTTATACTTATTTAA
Found at i:66061520 original size:55 final size:55
Alignment explanation
Indices: 66061400--66061521 Score: 174
Period size: 55 Copynumber: 2.2 Consensus size: 55
66061390 AGCCTGTGTG
* *
66061400 CAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTGCCCATGGA
1 CAACACTGACTTTAAAACACGGCCATGACACACACCCGTGTGGCCTACCCATGGA
* * * *
66061455 CAACATTGACTTTAAAACACGGTCATGACACACACCCGTGTGGCCTACCCGTGTA
1 CAACACTGACTTTAAAACACGGCCATGACACACACCCGTGTGGCCTACCCATGGA
66061510 CTAA-ACTGACTT
1 C-AACACTGACTT
66061522 ATATTTTAAG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 57 0.97
56 2 0.03
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.20
Consensus pattern (55 bp):
CAACACTGACTTTAAAACACGGCCATGACACACACCCGTGTGGCCTACCCATGGA
Found at i:66062434 original size:47 final size:46
Alignment explanation
Indices: 66062375--66062589 Score: 211
Period size: 47 Copynumber: 4.6 Consensus size: 46
66062365 ACGACTCTTA
* *
66062375 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCATCGAG
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGC-ACTCATAAT-GAG
* * * * * *
66062422 GCTGATGCATGTCCCAGACATGCCTTACACTGGCACTCAT-CTCTAC
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCACTCATAAT-GAG
* * * *
66062468 ACCAATGCCATGTCCCAGATATGGTCTTACACTGGCACTCATAATGTG
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGCACTCATAATGAG
*
66062516 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTA-
1 GCCGATGCATGTCCCAGACA-GGTCTTACACTGGCACTCATAATG-AG
* *
66062563 GCTGATGCATGTCCCAGACATGTCTTA
1 GCCGATGCATGTCCCAGACAGGTCTTA
66062590 TACTAGCATA
Statistics
Matches: 140, Mismatches: 23, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
46 14 0.10
47 102 0.73
48 23 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACAGGTCTTACACTGGCACTCATAATGAG
Found at i:66062449 original size:91 final size:94
Alignment explanation
Indices: 66062285--66062547 Score: 245
Period size: 91 Copynumber: 2.8 Consensus size: 94
66062275 TAAGTTGTCG
* * * * * *
66062285 ATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGGAT-ATCCATGCTGATGCATGTCCTC-G
1 ATGCCATGTCCCAGACATCGTCTTACACTGGCACTC--ATAAT-GAGGCTGATGCATGTCC-CAG
* * *
66062348 ATATGTCTTACACTAGCACGAC-TCT-TA-GCCG
62 ACATGTCTTACACTAGCAC-ACATCTCTACACCA
*
66062379 ATG-CATGTCCCAGACA-CGTCTTACACTGGCTA-TCATCATCGAGGCTGATGCATGTCCCAGAC
1 ATGCCATGTCCCAGACATCGTCTTACACTGGC-ACTCATAAT-GAGGCTGATGCATGTCCCAGAC
* * *
66062441 ATGCCTTACACTGGCACTCATCTCTACACCA
64 ATGTCTTACACTAGCACACATCTCTACACCA
* * * *
66062472 ATGCCATGTCCCAGATATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATCGTCTTACACTGGCACTCATAATGAGGCTGATGCATGTCCCAGACAT
66062537 GGTCTTACACT
66 -GTCTTACACT
66062548 GGCTCTCATA
Statistics
Matches: 141, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
90 4 0.03
91 38 0.27
92 15 0.11
93 18 0.13
94 38 0.27
95 28 0.20
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
ATGCCATGTCCCAGACATCGTCTTACACTGGCACTCATAATGAGGCTGATGCATGTCCCAGACAT
GTCTTACACTAGCACACATCTCTACACCA
Found at i:66062526 original size:94 final size:95
Alignment explanation
Indices: 66062382--66062556 Score: 248
Period size: 95 Copynumber: 1.9 Consensus size: 95
66062372 TTAGCCGATG
* *
66062382 CATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCCAGACAT-GCC
1 CATGTCCCAGACACGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGACATGGCC
66062446 TTACACTGGCACTCATCTCTACACCAATGC
66 TTACACTGGCACTCATCTCTACACCAATGC
* * *
66062476 CATGTCCCAGATATGGTCTTACACTGGC-ACTCATAAT-GTGGCCGATGCATGTCCCAGACATGG
1 CATGTCCCAGACA-CGTCTTACACTGGCTA-TCATAATCGAGGCCGATGCATGTCCCAGACATGG
* *
66062539 TCTTACACTGGCTCTCAT
64 CCTTACACTGGCACTCAT
66062557 AATGTAGCTG
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
94 35 0.49
95 36 0.51
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (95 bp):
CATGTCCCAGACACGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGACATGGCC
TTACACTGGCACTCATCTCTACACCAATGC
Found at i:66062574 original size:94 final size:92
Alignment explanation
Indices: 66062373--66062589 Score: 258
Period size: 94 Copynumber: 2.3 Consensus size: 92
66062363 GCACGACTCT
* * *
66062373 TAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCCA
1 TAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCA
*
66062438 GACATGCCTTACACTGGCACTCATCTC
66 GACATGCCTTACACTGGCACTCATATC
* * * *
66062465 TACACCAATGCCATGTCCCAGATATGGTCTTACACTGGC-ACTCATAAT-GTGGCCGATGCATGT
1 TA-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTA-TCATAATCGAGGCCGATGCATGT
* * *
66062528 CCCAGACATGGTCTTACACTGGCTCTCATAATG
62 CCCAGACAT-GCCTTACACTGGCACTCAT-ATC
*
66062561 TAGCTGATGCATGTCCCAGACATGTCTTA
1 TAGCCGATGCATGTCCCAGACATGTCTTA
66062590 TACTAGCATA
Statistics
Matches: 104, Mismatches: 15, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
92 2 0.02
93 11 0.11
94 48 0.46
95 40 0.38
96 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
TAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCA
GACATGCCTTACACTGGCACTCATATC
Found at i:66063930 original size:13 final size:13
Alignment explanation
Indices: 66063912--66063939 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
66063902 TTCCCTGGTG
66063912 TTGTATTGAATGA
1 TTGTATTGAATGA
66063925 TTGTATTGAATGA
1 TTGTATTGAATGA
66063938 TT
1 TT
66063940 TATGAGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (13 bp):
TTGTATTGAATGA
Found at i:66065408 original size:28 final size:27
Alignment explanation
Indices: 66065368--66065420 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
66065358 CGAAAGTTTA
*
66065368 AACTAGGTTTTCCTTTACCTTTATCTCT
1 AACTAGCTTTTCC-TTACCTTTATCTCT
*
66065396 AACTAGCTTTTCCTTGCCTTTATCT
1 AACTAGCTTTTCCTTACCTTTATCT
66065421 GTACTCGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.17, C:0.26, G:0.08, T:0.49
Consensus pattern (27 bp):
AACTAGCTTTTCCTTACCTTTATCTCT
Found at i:66078129 original size:24 final size:25
Alignment explanation
Indices: 66078084--66078144 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
66078074 TTTAGAGAAT
* *
66078084 TTTTATATTCTTTTTAAATTTATATA
1 TTTTATA-TATTTTTAAATTTAGATA
*
66078110 TTTTATATATTTTT-ATTTTAGATA
1 TTTTATATATTTTTAAATTTAGATA
*
66078134 ATTTATATATT
1 TTTTATATATT
66078145 ATAAAGAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 18 0.58
25 6 0.19
26 7 0.23
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (25 bp):
TTTTATATATTTTTAAATTTAGATA
Found at i:66078229 original size:15 final size:17
Alignment explanation
Indices: 66078177--66078229 Score: 65
Period size: 18 Copynumber: 3.2 Consensus size: 17
66078167 ATGTAATAAT
* *
66078177 TTTTATAATTATATATCT
1 TTTTATAATTTTATAT-A
66078195 TTTTATAATTTTATATA
1 TTTTATAATTTTATATA
66078212 TTTTA-AATTTTA-ATA
1 TTTTATAATTTTATATA
66078227 TTT
1 TTT
66078230 CTAATAGACG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 6 0.18
16 7 0.21
17 5 0.15
18 15 0.45
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTATAATTTTATATA
Found at i:66079167 original size:29 final size:29
Alignment explanation
Indices: 66079133--66079191 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
66079123 ATAATTGTAT
66079133 TTTATTTAATAT-AAAAATAAATCTATATA
1 TTTATTTAA-ATCAAAAATAAATCTATATA
* *
66079162 TTTATTTAAATCAAAATTAAATTTATATA
1 TTTATTTAAATCAAAAATAAATCTATATA
66079191 T
1 T
66079192 ATTAAATTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 2 0.07
29 25 0.93
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
TTTATTTAAATCAAAAATAAATCTATATA
Found at i:66084041 original size:21 final size:22
Alignment explanation
Indices: 66084015--66084063 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
66084005 TTGAATGTGC
*
66084015 AAATTTTTTATTTA-TTTTATA
1 AAATTTTTTATGTACTTTTATA
66084036 AAA-TTTTTATGTACTTTTATA
1 AAATTTTTTATGTACTTTTATA
66084057 AAATTTT
1 AAATTTT
66084064 GGAATCTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 9 0.36
21 13 0.52
22 3 0.12
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
AAATTTTTTATGTACTTTTATA
Found at i:66084116 original size:17 final size:18
Alignment explanation
Indices: 66084081--66084116 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
66084071 TTATAAAAAA
66084081 TATTATTTTTTAAAGTTT
1 TATTATTTTTTAAAGTTT
*
66084099 TATTTTTTTTTAAA-TTT
1 TATTATTTTTTAAAGTTT
66084116 T
1 T
66084117 CAGAATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (18 bp):
TATTATTTTTTAAAGTTT
Found at i:66084470 original size:224 final size:224
Alignment explanation
Indices: 66084078--66084485 Score: 624
Period size: 224 Copynumber: 1.8 Consensus size: 224
66084068 TCTTTATAAA
*
66084078 AAATATTATTTTTTAAAGTTTTATTTTTTTTTAAATTTTCAGAATAATATCTAAATTGATAGAAT
1 AAATATTATTTTTTAAAGTTTTA--TTTTTTAAAATTTTCAGAATAATATCTAAATTGATAGAAT
* * * ** *
66084143 GCGTAAATATTAGAAGATTAAATTTTTTATTTTGTCAATAAAAACATGACACATTAGCCTTCTAT
64 GCGTAAATATTAGAAAACTAAATTTGTTATTTTACCAATAAAAACATGACACATTAGCCTTCCAT
* *
66084208 TAACTATTTAATGATAGGTTACCTCCATCAATTGTATATCTGAACCCAAGTTGTTACCTATTGAT
129 TAACTATTCAATGATAGATTACCTCCATCAATTGTATATCTGAACCCAAGTTGTTACCTATTGAT
66084273 TGGGTGTTCATCTTTCCTAGGATTAGCTTGG
194 TGGGTGTTCATCTTTCCTAGGATTAGCTTGG
*
66084304 AAATATTATTTTTTAAAGTTTTA-TTTTTAAAATTTTTTTAGAATAATAT-TAAATTGATAGAAT
1 AAATATTATTTTTTAAAGTTTTATTTTTTAAAA--TTTTCAGAATAATATCTAAATTGATAGAAT
* * *
66084367 GTGTAAATATTTA-AAAACTAAATTTGTTATTTTACCAATAAAAACATGTCACATTAGCCTTCCG
64 GCGTAAATA-TTAGAAAACTAAATTTGTTATTTTACCAATAAAAACATGACACATTAGCCTTCCA
*
66084431 TTAACTATTCAATGATAGATTACCTCCATCAATTGTATATTTGAACCCAAGTTGT
128 TTAACTATTCAATGATAGATTACCTCCATCAATTGTATATCTGAACCCAAGTTGT
66084486 GGCCTATTTC
Statistics
Matches: 165, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
223 8 0.05
224 117 0.71
225 17 0.10
226 23 0.14
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.43
Consensus pattern (224 bp):
AAATATTATTTTTTAAAGTTTTATTTTTTAAAATTTTCAGAATAATATCTAAATTGATAGAATGC
GTAAATATTAGAAAACTAAATTTGTTATTTTACCAATAAAAACATGACACATTAGCCTTCCATTA
ACTATTCAATGATAGATTACCTCCATCAATTGTATATCTGAACCCAAGTTGTTACCTATTGATTG
GGTGTTCATCTTTCCTAGGATTAGCTTGG
Found at i:66084815 original size:24 final size:25
Alignment explanation
Indices: 66084788--66084835 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
66084778 TCGAGTTTAT
* *
66084788 TTTTCTTAGTTAGACTCT-ACTATC
1 TTTTCGTAGTTAAACTCTAACTATC
66084812 TTTTCGTAGTTAAACTCTAACTAT
1 TTTTCGTAGTTAAACTCTAACTAT
66084836 TCTAGGAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (25 bp):
TTTTCGTAGTTAAACTCTAACTATC
Found at i:66086469 original size:58 final size:56
Alignment explanation
Indices: 66086379--66086493 Score: 212
Period size: 58 Copynumber: 2.0 Consensus size: 56
66086369 CGTTTAACAA
66086379 TATCAAGAGATCTCACCATTCCGTCAAATAGTTCAAACCTCATGCACGCATATATAGT
1 TATCAAGAGATCTCACCATTCCGTCAAATAGTTCAAA-C-CATGCACGCATATATAGT
66086437 TATCAAGAGATCTCACCATTCCGTCAAATAGTTCAAACCATGCACGCATATATAGT
1 TATCAAGAGATCTCACCATTCCGTCAAATAGTTCAAACCATGCACGCATATATAGT
66086493 T
1 T
66086494 TATCTATTTC
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
56 19 0.33
57 1 0.02
58 37 0.65
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (56 bp):
TATCAAGAGATCTCACCATTCCGTCAAATAGTTCAAACCATGCACGCATATATAGT
Found at i:66087661 original size:47 final size:45
Alignment explanation
Indices: 66087555--66087669 Score: 126
Period size: 47 Copynumber: 2.5 Consensus size: 45
66087545 TGCACACTTT
* **
66087555 TCACAATTGGTCATTCGGCCTTATCACAAATTCATTTACACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACAAACACATTTACACATATA
66087601 TCACATTGGCCATTCGGCCTTATCACATATACACACTTT-CACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCACA-A-ACACA-TTTACACATAT-A
* *
66087648 TCACATTGTCCATTCGGTCTTA
1 TCACATTGGCCATTCGGCCTTA
66087670 AGCTAGATAT
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
45 22 0.37
46 6 0.10
47 29 0.48
48 3 0.05
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACAAACACATTTACACATATA
Found at i:66090256 original size:22 final size:20
Alignment explanation
Indices: 66090216--66090256 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
66090206 AGTCCTATTA
*
66090216 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
66090236 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
66090257 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:66093758 original size:68 final size:67
Alignment explanation
Indices: 66093642--66093901 Score: 288
Period size: 68 Copynumber: 3.8 Consensus size: 67
66093632 ATTAACATGG
* * *
66093642 GTTCATAATGTGTACGACCATAGCTCGACTATGGCAACATATGGAGTCCGCTAGGACATTAAATA
1 GTTCATAATGTGTAAGACCATAGCTCGACTATGGCAACATATGAAGTCCACTAGGACATTAAATA
66093707 TCA
66 T-A
* ** * * *
66093710 GTTCATAATATGTAAGACCATAGCTC-AGCTATGGCAACATAAAAAGTCCACCAAGACATTAAAC
1 GTTCATAATGTGTAAGACCATAGCTCGA-CTATGGCAACATATGAAGTCCACTAGGACATTAAAT
66093774 ATA
65 ATA
* * * **
66093777 GGTTCATAATGTGTAAGACCATAGTTTGACTATGACAACATATGGTGTCCACTAGGACATTAAAT
1 -GTTCATAATGTGTAAGACCATAGCTCGACTATGGCAACATATGAAGTCCACTAGGACATTAAAT
**
66093842 AGGG
65 A-TA
* * * * *
66093846 GTTCATATTGTGTAAGACCATAGCTCGTCTATGGCAGCATGTGAAGTCCGCTAGGA
1 GTTCATAATGTGTAAGACCATAGCTCGACTATGGCAACATATGAAGTCCACTAGGA
66093902 TGGTGAACTA
Statistics
Matches: 156, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
67 2 0.01
68 153 0.98
69 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (67 bp):
GTTCATAATGTGTAAGACCATAGCTCGACTATGGCAACATATGAAGTCCACTAGGACATTAAATA
TA
Found at i:66093894 original size:136 final size:135
Alignment explanation
Indices: 66093631--66093881 Score: 369
Period size: 136 Copynumber: 1.9 Consensus size: 135
66093621 TACGTTAATG
* * * *
66093631 CATTAACATGGGTTCATAATGTGTACGACCATAGCTCGACTATGGCAACATATGGAGTCCGCTAG
1 CATTAACATAGGTTCATAATGTGTAAGACCATAGCTCGACTATGACAACATATGGAGTCCACTAG
*
66093696 GACATTAAATATCAGTTCATAATATGTAAGACCATAGCTCAGCTATGGCAACATAAAAAGTCCAC
66 GACATTAAATAGCAGTTCATAATATGTAAGACCATAGCTCAGCTATGGCAACATAAAAAGTCCAC
66093761 CAAGA
131 CAAGA
* * *
66093766 CATTAAACATAGGTTCATAATGTGTAAGACCATAGTTTGACTATGACAACATATGGTGTCCACTA
1 CATT-AACATAGGTTCATAATGTGTAAGACCATAGCTCGACTATGACAACATATGGAGTCCACTA
** * *
66093831 GGACATTAAATAGGGGTTCATATTGTGTAAGACCATAGCTC-GTCTATGGCA
65 GGACATTAAATAGCAGTTCATAATATGTAAGACCATAGCTCAG-CTATGGCA
66093882 GCATGTGAAG
Statistics
Matches: 102, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
135 5 0.05
136 97 0.95
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (135 bp):
CATTAACATAGGTTCATAATGTGTAAGACCATAGCTCGACTATGACAACATATGGAGTCCACTAG
GACATTAAATAGCAGTTCATAATATGTAAGACCATAGCTCAGCTATGGCAACATAAAAAGTCCAC
CAAGA
Found at i:66100175 original size:40 final size:40
Alignment explanation
Indices: 66100138--66100355 Score: 255
Period size: 40 Copynumber: 5.5 Consensus size: 40
66100128 GCTACTCGTT
* * *
66100138 CAAATGCCTTCGGGACAT-AGCCGGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
66100178 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66100218 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
66100258 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
66100297 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
66100338 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
66100356 GCCTTCAGGA
Statistics
Matches: 156, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.20
40 106 0.68
41 17 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:66100250 original size:80 final size:80
Alignment explanation
Indices: 66100138--66100355 Score: 255
Period size: 79 Copynumber: 2.7 Consensus size: 80
66100128 GCTACTCGTT
* * *
66100138 CAAATGCCTTCGGGACAT-AGCCGGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
66100202 GATTTAGTAACTCGCA
65 GAATTAGTAACTCACA
* *
66100218 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
66100282 AATTAGTATCTCACA
66 AATTAGTAACTCACA
** * * * *
66100297 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTA
66100356 GCCTTCAGGA
Statistics
Matches: 119, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
78 3 0.03
79 56 0.47
80 53 0.45
81 7 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCACA
Found at i:66100322 original size:119 final size:120
Alignment explanation
Indices: 66100140--66100355 Score: 278
Period size: 119 Copynumber: 1.8 Consensus size: 120
66100130 TACTCGTTCA
** *
66100140 AATGCCTTCGGGACATAGCCGGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCGGAATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
* *
66100205 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
66100260 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCACACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAG-CCGGAATATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
* *
66100322 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
66100356 GCCTTCAGGA
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.04
119 54 0.66
120 25 0.30
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCGGAATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:66100360 original size:14 final size:14
Alignment explanation
Indices: 66100341--66100372 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
66100331 CTTAGCACAA
*
66100341 AGCCTTCGGGACTT
1 AGCCTTCAGGACTT
66100355 AGCCTTCAGGACTT
1 AGCCTTCAGGACTT
66100369 AGCC
1 AGCC
66100373 CGGACATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.31, G:0.25, T:0.25
Consensus pattern (14 bp):
AGCCTTCAGGACTT
Found at i:66101572 original size:56 final size:56
Alignment explanation
Indices: 66101502--66101677 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
66101492 TATTAGTTTA
66101502 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
66101558 TTACCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
66101614 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACATAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
66101670 TTGCCCAT
1 TTGCCCAT
66101678 CATCCCTTGT
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 116 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:66103692 original size:131 final size:131
Alignment explanation
Indices: 66103441--66103764 Score: 373
Period size: 131 Copynumber: 2.5 Consensus size: 131
66103431 CACAGTACAG
* * * * * * * * *
66103441 TAGGGCACGACTCCTCGAATTTCTAGATATCGAACATCGCCTTC-TCTTAAAGAATTTTTAAAGA
1 TAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTAAAAA
** * * * * * *
66103505 CATGGGTGAAATTCCAAAGGAATATTGGATTGTTTCGAACGAACGGGAAATCGCAACCCAGCACG
66 CATGAATGAAATTCCAAAGGAACATTCGATTATTTCGAACAAACGAGAAATCGCAACCCAACACG
66103570 A
131 A
** * *
66103571 TAGGGCACGATTCC-CGAATTGCCAAACATCGAGTATTACCTTCGTTTTAAAGAGTTTTTAGAAA
1 TAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTA-AAA
* * * *
66103635 ACATGAATGAAATTCCAAAGGGACATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACAC
65 ACATGAATGAAATTCCAAAGGAACATTCGATTATTTCGAACAAACGAGAAATCGCAACCCAACAC
*
66103700 GT
130 GA
* *
66103702 TAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAATTTTTAAA
1 TAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTAAA
66103765 TGAACAATTG
Statistics
Matches: 160, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
129 21 0.13
130 27 0.17
131 72 0.45
132 40 0.25
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (131 bp):
TAGGGCACGATTCCGCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAAGAATTTTTAAAAA
CATGAATGAAATTCCAAAGGAACATTCGATTATTTCGAACAAACGAGAAATCGCAACCCAACACG
A
Found at i:66118699 original size:131 final size:131
Alignment explanation
Indices: 66118428--66118777 Score: 382
Period size: 131 Copynumber: 2.7 Consensus size: 131
66118418 TATTTAGTCT
* * * * * * * * *
66118428 AACGAGAAAATCGAAACCCAGCAC-AGTAGGGCACGACTCCTCGAATTTCTAGATATCGAACATC
1 AACGAG-AAATCGCAACCCAACACGA-TAGGGCACGATTCCGCAAATTGCCAAACATCGAACATC
* * * ** *
66118492 GCCTTCG-CTTAAAGAATTTTTAAAGACATGGGTGAAATTCCAAAGGAATATTCGATTATTTTGA
64 ACCTTCGTTTTAAAGAATTTTTAAAAACATGAATGAAATTCCAAAGGAACATTCGATTATTTTGA
*
66118556 ACG
129 ACA
* * ** *
66118559 AACGGGAAATCGCAACCCAGCACGATAGGGCACGATTCC-CAAATTGCCAAACATCGAGTATTAC
1 AACGAGAAATCGCAACCCAACACGATAGGGCACGATTCCGCAAATTGCCAAACATCGAACATCAC
* * *
66118623 CTTCGTTTTAAAGAGTTTTTAGAAAACATGAATGAAATTCCAAAGGGACATTCGATTATTTTGAG
66 CTTCGTTTTAAAGAATTTTTA-AAAACATGAATGAAATTCCAAAGGAACATTCGATTATTTTGAA
66118688 CA
130 CA
* * * * * *
66118690 AACGAGAAATTGCAACTCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGC
1 AACGAGAAATCGCAACCCAACACGATAGGGCACGATTCCGCAAATTGCCAAACATCGAACATCAC
66118755 CTTCGTTTTAAAGAATTTTTAAA
66 CTTCGTTTTAAAGAATTTTTAAA
66118778 TGAACAATTG
Statistics
Matches: 182, Mismatches: 33, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
129 21 0.12
130 42 0.23
131 80 0.44
132 39 0.21
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (131 bp):
AACGAGAAATCGCAACCCAACACGATAGGGCACGATTCCGCAAATTGCCAAACATCGAACATCAC
CTTCGTTTTAAAGAATTTTTAAAAACATGAATGAAATTCCAAAGGAACATTCGATTATTTTGAAC
A
Found at i:66123655 original size:68 final size:68
Alignment explanation
Indices: 66123547--66123735 Score: 240
Period size: 68 Copynumber: 2.8 Consensus size: 68
66123537 AATCGAAAGA
* * *
66123547 CTGCCAGGACA-TAAACATTAATTCATAATGTGTAAGACCATAGCTCGACTATTG-CAACATATA
1 CTGCCAGGACATTAAACATGATTTCATAATGTGTAAGACCATAGCTCGACTA-TGAAAACATATA
66123610 GAGT
65 GAGT
* * * * *
66123614 CTGCCAGGACATTAAACATGGTTTCTTAATATGTAAGACCATAGCTCGATTATGAAAACATATGG
1 CTGCCAGGACATTAAACATGATTTCATAATGTGTAAGACCATAGCTCGACTATGAAAACATATAG
66123679 AGT
66 AGT
* * *
66123682 CTGCCAGGACATTAAACATAGCTTT-ATATTGTGTAAGACCATAGCTCGATTATG
1 CTGCCAGGACATTAAACAT-GATTTCATAATGTGTAAGACCATAGCTCGACTATG
66123736 GTAGCATGTG
Statistics
Matches: 107, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
67 13 0.12
68 90 0.84
69 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (68 bp):
CTGCCAGGACATTAAACATGATTTCATAATGTGTAAGACCATAGCTCGACTATGAAAACATATAG
AGT
Found at i:66126947 original size:47 final size:47
Alignment explanation
Indices: 66126895--66127395 Score: 806
Period size: 47 Copynumber: 10.6 Consensus size: 47
66126885 GATAATTGTG
* *
66126895 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
66126942 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66126989 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66127038 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
66127085 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66127131 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66127180 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
66127229 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
66127276 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
66127323 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
66127370 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
66127396 TCCCGAAGGG
Statistics
Matches: 427, Mismatches: 22, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
46 20 0.05
47 268 0.63
48 25 0.06
49 114 0.27
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:66127176 original size:238 final size:238
Alignment explanation
Indices: 66126895--66127395 Score: 852
Period size: 238 Copynumber: 2.1 Consensus size: 238
66126885 GATAATTGTG
66126895 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATA
66126957 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
*
66127022 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
129 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
66127087 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGA
194 GTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
66127131 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATAT
* *
66127196 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
65 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
66127261 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATG
130 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * *
66127326 TGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
195 TGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
66127370 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
66127396 TCCCGAAGGG
Statistics
Matches: 251, Mismatches: 9, Indels: 9
0.93 0.03 0.03
Matches are distributed among these distances:
236 5 0.02
237 12 0.05
238 167 0.67
239 22 0.09
240 45 0.18
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (238 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
Found at i:66127184 original size:191 final size:190
Alignment explanation
Indices: 66126895--66127395 Score: 855
Period size: 191 Copynumber: 2.6 Consensus size: 190
66126885 GATAATTGTG
* *
66126895 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66126960 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
*
66127025 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
66127085 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
* *
66127149 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
64 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66127214 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
129 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
66127276 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
66127341 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
66127396 TCCCGAAGGG
Statistics
Matches: 293, Mismatches: 15, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
188 10 0.03
189 21 0.07
190 78 0.27
191 164 0.56
192 20 0.07
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (190 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:66129973 original size:40 final size:40
Alignment explanation
Indices: 66129616--66129961 Score: 538
Period size: 40 Copynumber: 8.7 Consensus size: 40
66129606 AGGTCTCGAC
66129616 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
66129655 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
66129694 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
66129734 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
66129773 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
66129813 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
66129853 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
66129893 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGT
* * *
66129933 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
66129962 ATCATGCTGG
Statistics
Matches: 282, Mismatches: 20, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
39 81 0.29
40 199 0.71
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:66133679 original size:47 final size:47
Alignment explanation
Indices: 66133627--66134064 Score: 709
Period size: 47 Copynumber: 9.6 Consensus size: 47
66133617 GATAATTGTG
* *
66133627 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66133674 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66133721 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66133768 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66133815 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66133862 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66133909 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66133956 ATGTGAAAGTGTATATATGTGAT-A----T-AT-----ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
66133992 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
66134039 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
66134065 TCCCGAAGGG
Statistics
Matches: 369, Mismatches: 11, Indels: 22
0.92 0.03 0.05
Matches are distributed among these distances:
36 31 0.08
41 2 0.01
42 2 0.01
46 1 0.00
47 333 0.90
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:66134010 original size:83 final size:83
Alignment explanation
Indices: 66133900--66134062 Score: 254
Period size: 83 Copynumber: 2.0 Consensus size: 83
66133890 CTAATGGCCG
* * * *
66133900 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
*
66133965 TGTATATATGTGATATAT
66 TGTATAAATGTGATATAT
* * *
66133983 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
66134048 TGTATAAATGTGATA
66 TGTATAAATGTGATA
66134063 AGTCCCGAAG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
83 72 1.00
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.31
Consensus pattern (83 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
TGTATAAATGTGATATAT
Found at i:66142843 original size:20 final size:21
Alignment explanation
Indices: 66142785--66142844 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
66142775 ATGTAGAATT
* * *
66142785 TTTTTTTTTTATTTTTTTAAC
1 TTTTTTATATATTTTTATAAC
66142806 TTTTTTATATATTCTTTATAA-
1 TTTTTTATATATT-TTTATAAC
66142827 TTTTTCTATA-ATTTTTAT
1 TTTTT-TATATATTTTTAT
66142845 TTTTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 5 0.15
21 19 0.56
22 10 0.29
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTTTATATATTTTTATAAC
Found at i:66144653 original size:25 final size:25
Alignment explanation
Indices: 66144619--66144689 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 25
66144609 GGGACGGTGG
* *
66144619 AATTATTTAATA-TAATTATAATTAT
1 AATTATTTAATATTAA-TATAATAAC
66144644 AATTATTTAATATTAATATAATAAC
1 AATTATTTAATATTAATATAATAAC
*
66144669 AATGATTTAATATTAATATAA
1 AATTATTTAATATTAATATAA
66144690 AATTTAAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
25 39 0.93
26 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (25 bp):
AATTATTTAATATTAATATAATAAC
Found at i:66148629 original size:22 final size:24
Alignment explanation
Indices: 66148586--66148630 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
66148576 GTGTTGCAAT
*
66148586 TATTTTATATTTTATAATAATAAA
1 TATTTTATATTTTATAAAAATAAA
66148610 TATTTTAT-TTTTA-AAAAATAA
1 TATTTTATATTTTATAAAAATAA
66148631 TTTTCGAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 7 0.35
23 5 0.25
24 8 0.40
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TATTTTATATTTTATAAAAATAAA
Found at i:66153441 original size:14 final size:14
Alignment explanation
Indices: 66153422--66153448 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
66153412 CGCGAAAACT
66153422 AAGAAAGATAAAAA
1 AAGAAAGATAAAAA
66153436 AAGAAAGATAAAA
1 AAGAAAGATAAAA
66153449 TTTTTAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (14 bp):
AAGAAAGATAAAAA
Found at i:66154253 original size:19 final size:19
Alignment explanation
Indices: 66154231--66154279 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
66154221 AAATATTTAA
66154231 TTAATTAATTTTATGA-ATT
1 TTAA-TAATTTTATGATATT
* *
66154250 TTAAGAACTTTATGATATT
1 TTAATAATTTTATGATATT
*
66154269 TTTATAATTTT
1 TTAATAATTTT
66154280 TTAAAAATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (19 bp):
TTAATAATTTTATGATATT
Found at i:66166737 original size:26 final size:26
Alignment explanation
Indices: 66166708--66166766 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
66166698 ATAAAACTTA
* *
66166708 AAAATGAAATAGTA-TTAAATGAAAAT
1 AAAATAAAAAAGTACTTAAA-GAAAAT
*
66166734 AAAATAAAAAAGTACTTAAAGAAGAT
1 AAAATAAAAAAGTACTTAAAGAAAAT
66166760 -AAATAAA
1 AAAATAAA
66166767 GATAAAAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 7 0.24
26 17 0.59
27 5 0.17
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (26 bp):
AAAATAAAAAAGTACTTAAAGAAAAT
Found at i:66178355 original size:25 final size:25
Alignment explanation
Indices: 66178322--66178373 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
66178312 ACGTCATCAA
66178322 CAAAATTAGGGTCACACAGCCAAGT
1 CAAAATTAGGGTCACACAGCCAAGT
**
66178347 CAAAATTAGGGTCACATGGCCAAGT
1 CAAAATTAGGGTCACACAGCCAAGT
66178372 CA
1 CA
66178374 CACGCCCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (25 bp):
CAAAATTAGGGTCACACAGCCAAGT
Found at i:66179676 original size:48 final size:48
Alignment explanation
Indices: 66179601--66179797 Score: 216
Period size: 48 Copynumber: 4.1 Consensus size: 48
66179591 CACATGGTAG
* * * * *
66179601 GATGTCAATACCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATTTCCCAGACATGGTCTTACATGGGATCACAGATC
* * **
66179649 GATGCCAATGCCATTTCCCAGACATGGTCTTATAGGGGATCGTAGATC
1 GATGCCAATGCCATTTCCCAGACATGGTCTTACATGGGATCACAGATC
* * * ***
66179697 GATGCCAACGCCATGTCCCAGACATGGTCTTATATGGGATTGTAGATC
1 GATGCCAATGCCATTTCCCAGACATGGTCTTACATGGGATCACAGATC
* * *
66179745 GATGCCGATGCCATGTT-CTAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCAT-TTCCCAGACATGGTCTTACATGGGATCACAGATC
66179793 GATGC
1 GATGC
66179798 TGATAGCCCA
Statistics
Matches: 126, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
48 125 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATTTCCCAGACATGGTCTTACATGGGATCACAGATC
Found at i:66182439 original size:21 final size:21
Alignment explanation
Indices: 66182395--66182435 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
66182385 GTTTGTTTAA
* *
66182395 CAACTAAGATTAATAATATAT
1 CAACTAACATCAATAATATAT
66182416 CAACTAACATCAA-AATATAT
1 CAACTAACATCAATAATATAT
66182436 TCAAACTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.54, C:0.15, G:0.02, T:0.29
Consensus pattern (21 bp):
CAACTAACATCAATAATATAT
Found at i:66182541 original size:108 final size:108
Alignment explanation
Indices: 66182416--66182631 Score: 423
Period size: 108 Copynumber: 2.0 Consensus size: 108
66182406 AATAATATAT
66182416 CAACTAACATCAAAATATATTCAAACTGAACCATGAAAAGTCCCTTAAACTTTAAAAAATTTTCA
1 CAACTAACATCAAAATATATTCAAACTGAACCATGAAAAGTCCCTTAAACTTTAAAAAATTTTCA
66182481 AATTAATTATGGGCTAGCTAGATTAGGCTAATACAAACTCAAA
66 AATTAATTATGGGCTAGCTAGATTAGGCTAATACAAACTCAAA
66182524 CAACTAACATCAAAATATATTCAAACTGAACCATGAAAAGTCCCTTAAACTTTAAAAAATTTTCA
1 CAACTAACATCAAAATATATTCAAACTGAACCATGAAAAGTCCCTTAAACTTTAAAAAATTTTCA
*
66182589 AATTAATTCTGGGCTAGCTAGATTAGGCTAATACAAACTCAAA
66 AATTAATTATGGGCTAGCTAGATTAGGCTAATACAAACTCAAA
66182632 AACATAAAAA
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.28
Consensus pattern (108 bp):
CAACTAACATCAAAATATATTCAAACTGAACCATGAAAAGTCCCTTAAACTTTAAAAAATTTTCA
AATTAATTATGGGCTAGCTAGATTAGGCTAATACAAACTCAAA
Found at i:66183660 original size:101 final size:101
Alignment explanation
Indices: 66183485--66183687 Score: 370
Period size: 101 Copynumber: 2.0 Consensus size: 101
66183475 TTCCATCATC
*
66183485 TATTCTAGACATTTAAGCCACTTATTGAAGGGTTCTTGCACTACAAATCTAGTGCCTAGATAGAT
1 TATTCTAGACATTTAAGCCACTTATTGAAGGGTTCATGCACTACAAATCTAGTGCCTAGATAGAT
*
66183550 AGCACATTCTTGTATATGAAGTATAAGGAGAAACTT
66 AGCACATTCTTGTATACGAAGTATAAGGAGAAACTT
*
66183586 TATTCTAGACATTTAAGCGACTTATTGAAGGGTTCATGCACTACAAATCTAGTGCCTAGATAGAT
1 TATTCTAGACATTTAAGCCACTTATTGAAGGGTTCATGCACTACAAATCTAGTGCCTAGATAGAT
*
66183651 AGCACATTCTTGTATGCGAAGTATAAGGAGAAACTT
66 AGCACATTCTTGTATACGAAGTATAAGGAGAAACTT
66183687 T
1 T
66183688 TTGTAACTAT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 98 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (101 bp):
TATTCTAGACATTTAAGCCACTTATTGAAGGGTTCATGCACTACAAATCTAGTGCCTAGATAGAT
AGCACATTCTTGTATACGAAGTATAAGGAGAAACTT
Found at i:66188050 original size:45 final size:44
Alignment explanation
Indices: 66188008--66188102 Score: 138
Period size: 44 Copynumber: 2.2 Consensus size: 44
66187998 GGGTTCATGA
* * *
66188008 TATGTATGAG-GCATCCGAGCTTGTTGAGTTGGTCCAAGTTCAT
1 TATGGATGAGAGCATCCAAGCTCGTTGAGTTGGTCCAAGTTCAT
* *
66188051 TATGGATGCGAGCATCCAAGCTCGTTGAGTTGGTCCTAGTTCAT
1 TATGGATGAGAGCATCCAAGCTCGTTGAGTTGGTCCAAGTTCAT
66188095 TATGGATG
1 TATGGATG
66188103 CGATACATGT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 8 0.17
44 38 0.83
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (44 bp):
TATGGATGAGAGCATCCAAGCTCGTTGAGTTGGTCCAAGTTCAT
Found at i:66188081 original size:44 final size:44
Alignment explanation
Indices: 66188018--66188105 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
66188008 TATGTATGAG
* *
66188018 GCATCCGAGCTTGTTGAGTTGGTCCAAGTTCATTATGGATGCGA
1 GCATCCAAGCTCGTTGAGTTGGTCCAAGTTCATTATGGATGCGA
*
66188062 GCATCCAAGCTCGTTGAGTTGGTCCTAGTTCATTATGGATGCGA
1 GCATCCAAGCTCGTTGAGTTGGTCCAAGTTCATTATGGATGCGA
66188106 TACATGTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.32
Consensus pattern (44 bp):
GCATCCAAGCTCGTTGAGTTGGTCCAAGTTCATTATGGATGCGA
Found at i:66193743 original size:19 final size:21
Alignment explanation
Indices: 66193719--66193760 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
66193709 TTATGGCAAA
66193719 TACATGGG-GT-TGAAGAGGC
1 TACATGGGAGTCTGAAGAGGC
*
66193738 TACATGGGAGTCTGAGGAGGC
1 TACATGGGAGTCTGAAGAGGC
66193759 TA
1 TA
66193761 TGAGGAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 2 0.10
21 10 0.50
ACGTcount: A:0.26, C:0.12, G:0.40, T:0.21
Consensus pattern (21 bp):
TACATGGGAGTCTGAAGAGGC
Found at i:66195696 original size:20 final size:21
Alignment explanation
Indices: 66195660--66195709 Score: 84
Period size: 20 Copynumber: 2.4 Consensus size: 21
66195650 TACTTTAGCC
*
66195660 ATTTATTTTTCTTGCAATTTA
1 ATTTAATTTTCTTGCAATTTA
66195681 ATTTAATTTT-TTGCAATTTA
1 ATTTAATTTTCTTGCAATTTA
66195701 ATTTAATTT
1 ATTTAATTT
66195710 AATTACTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (21 bp):
ATTTAATTTTCTTGCAATTTA
Found at i:66198476 original size:72 final size:72
Alignment explanation
Indices: 66198359--66198502 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
66198349 CTTTATTTTA
*
66198359 ATGAGATTGATAGTAGGAATGAGGAGTATAAACTCCTCAAACCACCATGATCATTCAACAGAGAG
1 ATGAGATTGATAGCAGGAATGAGGAGTATAAACTCCTCAAACCACCATGATCATTCAACAGAGAG
66198424 GTAAGTC
66 GTAAGTC
66198431 ATGAGATTGATAGCAGGAATGAGGAGTATAAACTCCTCAAACCACCATGATCATTCAACAGAGAG
1 ATGAGATTGATAGCAGGAATGAGGAGTATAAACTCCTCAAACCACCATGATCATTCAACAGAGAG
66198496 GTAAGTC
66 GTAAGTC
66198503 GAGCTTAGAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (72 bp):
ATGAGATTGATAGCAGGAATGAGGAGTATAAACTCCTCAAACCACCATGATCATTCAACAGAGAG
GTAAGTC
Found at i:66203352 original size:37 final size:37
Alignment explanation
Indices: 66203302--66203380 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
66203292 TTATTACGAA
* * *
66203302 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
66203339 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
66203376 GTCTT
1 GTCTT
66203381 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:66203577 original size:47 final size:47
Alignment explanation
Indices: 66203499--66203973 Score: 783
Period size: 47 Copynumber: 10.1 Consensus size: 47
66203489 CCCTTCGGGA
* * * * * *
66203499 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66203546 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66203593 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66203640 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66203688 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66203735 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66203782 C-TATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66203829 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66203876 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66203923 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66203970 CTTA
1 CTTA
66203974 CTATCATTTC
Statistics
Matches: 408, Mismatches: 15, Indels: 10
0.94 0.03 0.02
Matches are distributed among these distances:
46 12 0.03
47 345 0.85
48 45 0.11
49 6 0.01
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66207453 original size:39 final size:39
Alignment explanation
Indices: 66207409--66207561 Score: 166
Period size: 39 Copynumber: 3.9 Consensus size: 39
66207399 CGAATACACG
* * *
66207409 TCACCAGCATGATTGCTCTTCGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGACTTAGCCCGGATATA
* ** * *
66207448 ACACCAGCACGAATGCTCTTCGGGGTTTGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGACTTAGCCCGGATATA
* *
66207487 TCA-CTGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGG-ACTTAGCCCGGATATA
* *
66207526 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGAT
1 TCACCAGCACGAATGCTCTTC-GGACTTAGCCCGGAT
66207562 TTAGTAACTC
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
38 18 0.19
39 53 0.57
40 20 0.22
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
TCACCAGCACGAATGCTCTTCGGACTTAGCCCGGATATA
Found at i:66207561 original size:78 final size:77
Alignment explanation
Indices: 66207422--66207632 Score: 200
Period size: 78 Copynumber: 2.8 Consensus size: 77
66207412 CCAGCATGAT
* * * * * *
66207422 TGCTCTTCGG-ACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGG-GTTTGCACGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCA-GAATGCTCTTCGGGACTTAGC-CGGATA
* *
66207485 TA-TCACTGCACGAA
64 TAGTAACT-CACAAA
*
66207499 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCGGATTT
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCA-GAATGCTCTTCGGGACTTAGCCGGATAT
66207564 AGTAACTCACAAA
65 AGTAACTCACAAA
* * ** * *
66207577 TGC-CTTCGGATCTTAGTCCGGAT-GGTCACTTAGCACAAAGC-CTTCGGGACTTAGCC
1 TGCTCTTCGGAACTTAGCCCGGATACATCAC-TAGCAGAATGCTCTTCGGGACTTAGCC
66207633 CGGACATCAT
Statistics
Matches: 114, Mismatches: 16, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
75 15 0.13
76 8 0.07
77 33 0.29
78 50 0.44
79 8 0.07
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (77 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAGAATGCTCTTCGGGACTTAGCCGGATATA
GTAACTCACAAA
Found at i:66207978 original size:29 final size:29
Alignment explanation
Indices: 66207939--66208016 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
66207929 CTTAATAATC
*
66207939 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
66207969 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
66207998 AGCCCGCACA-TTAGTGCCA
1 AACCCGCACACTTAGTGCCA
66208017 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 12 0.28
29 28 0.65
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:66208059 original size:43 final size:43
Alignment explanation
Indices: 66207999--66208100 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
66207989 TGCATTTCAA
66207999 GCCCGCACA-TTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
66208041 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
66208084 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
66208101 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 9 0.15
43 50 0.85
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:66208644 original size:49 final size:47
Alignment explanation
Indices: 66208575--66208819 Score: 424
Period size: 49 Copynumber: 5.2 Consensus size: 47
66208565 ACATCGGCCA
66208575 TAGGCCTTATCAC-TATATACACTTTCACATTCATCACATCGGCCAT
1 TAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCAT
66208621 GTAGGCCTTATTCACGTATATACACTTTCACATTCATCACATCGGCCAT
1 -TAGGCCTTA-TCACGTATATACACTTTCACATTCATCACATCGGCCAT
*
66208670 TAGGCCCTTATCACATTATATACACTTTCACATTCATCACATCGGCCAT
1 TAGG-CCTTATCAC-GTATATACACTTTCACATTCATCACATCGGCCAT
66208719 TAGGCC-TATCACGTATA-ACACTTTCACATTCATCACATCGGCCAT
1 TAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCAT
66208764 TAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCAT
1 TAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCAT
66208811 TAGGCCTTA
1 TAGGCCTTA
66208820 CTATCATTTC
Statistics
Matches: 190, Mismatches: 2, Indels: 12
0.93 0.01 0.06
Matches are distributed among these distances:
45 34 0.18
46 15 0.08
47 52 0.27
48 14 0.07
49 75 0.39
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCAT
Found at i:66208825 original size:143 final size:142
Alignment explanation
Indices: 66208561--66208816 Score: 457
Period size: 141 Copynumber: 1.8 Consensus size: 142
66208551 CACATCGGCA
66208561 TCATACATCGGCCATAGGCCTTATCACTATATACACTTTCACATTCATCACATCGGCCATGTAGG
1 TCATACATCGGCCATAGGCCTTATCACTATATACACTTTCACATTCATCACATCGGCCATGTAGG
66208626 CCTTATTCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTTATCACATTATAT
66 CCTTATTCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTTATCACATTATAT
66208691 ACACTTTCACAT
131 ACACTTTCACAT
66208703 TCATCACATCGGCCATTAGGCC-TATCACGTATA-ACACTTTCACATTCATCACATCGGCCAT-T
1 TCAT-ACATCGGCCA-TAGGCCTTATCAC-TATATACACTTTCACATTCATCACATCGGCCATGT
66208765 AGGCCTTA-TCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCC
63 AGGCCTTATTCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66208817 TTACTATCAT
Statistics
Matches: 111, Mismatches: 0, Indels: 7
0.94 0.00 0.06
Matches are distributed among these distances:
141 44 0.40
142 13 0.12
143 44 0.40
144 10 0.09
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (142 bp):
TCATACATCGGCCATAGGCCTTATCACTATATACACTTTCACATTCATCACATCGGCCATGTAGG
CCTTATTCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTTATCACATTATAT
ACACTTTCACAT
Found at i:66212597 original size:14 final size:14
Alignment explanation
Indices: 66212578--66212605 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
66212568 AGTTTGCAAA
66212578 CTGCTTAGATCTAT
1 CTGCTTAGATCTAT
66212592 CTGCTTAGATCTAT
1 CTGCTTAGATCTAT
66212606 ATATGAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (14 bp):
CTGCTTAGATCTAT
Found at i:66214830 original size:25 final size:25
Alignment explanation
Indices: 66214785--66214833 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
66214775 CCTTATAATG
* * *
66214785 TGAAAATGACCTTTTTGCCCCTAGT
1 TGAAAATGACCATTATACCCCTAGT
66214810 TGAAAATGACCATTATACCCCTAG
1 TGAAAATGACCATTATACCCCTAG
66214834 GGTTACGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (25 bp):
TGAAAATGACCATTATACCCCTAGT
Found at i:66214890 original size:10 final size:10
Alignment explanation
Indices: 66214875--66214913 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
66214865 TGCTTTTGTA
66214875 CATGATATGC
1 CATGATATGC
66214885 CATGATATGC
1 CATGATATGC
66214895 ACATGATATGC
1 -CATGATATGC
66214906 CATGATAT
1 CATGATAT
66214914 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:66214899 original size:21 final size:21
Alignment explanation
Indices: 66214874--66214913 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
66214864 CTGCTTTTGT
66214874 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
66214895 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
66214914 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:66217835 original size:18 final size:19
Alignment explanation
Indices: 66217801--66217837 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
66217791 TTATGGATAG
*
66217801 TTAATTAAAGTTTAATTAA
1 TTAATTAAAGGTTAATTAA
66217820 TTAATT-AAGGTTAATTAA
1 TTAATTAAAGGTTAATTAA
66217838 CTTTTAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (19 bp):
TTAATTAAAGGTTAATTAA
Found at i:66232756 original size:39 final size:40
Alignment explanation
Indices: 66232655--66232878 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
66232645 TTGAATGATG
* *
66232655 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
66232694 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
66232735 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
66232774 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
66232813 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
66232852 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
66232879 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
39 75 0.45
40 78 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:66232842 original size:79 final size:80
Alignment explanation
Indices: 66232655--66232878 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
66232645 TTGAATGATG
* * * *
66232655 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
*
66232718 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
66232735 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
66232797 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
66232813 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
66232878 G
66 G
66232879 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 36 0.28
79 56 0.44
80 35 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:66232900 original size:79 final size:79
Alignment explanation
Indices: 66232655--66232911 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
66232645 TTGAATGATG
* * * * *
66232655 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
66232717 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
66232735 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
66232799 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
66232813 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
66232877 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
66232893 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
66232912 TACGTGATTT
Statistics
Matches: 153, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 36 0.24
79 68 0.44
80 47 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:66252313 original size:47 final size:47
Alignment explanation
Indices: 66252250--66252806 Score: 784
Period size: 47 Copynumber: 11.8 Consensus size: 47
66252240 CCCTTCGGGA
* * *
66252250 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
66252297 CTTACCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
66252344 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66252391 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66252438 CTTATCTCATATATTCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66252485 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66252532 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
66252579 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
66252626 CTTATCACATATATATACACT-TTCACATTCATCACATCGGCCATTAGTC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
66252675 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
66252722 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
66252769 CTTATCACATATATATACACT-TTCACATTCATCACATT
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATT
66252807 CCAATGAATA
Statistics
Matches: 470, Mismatches: 34, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 400 0.85
49 68 0.14
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:66256363 original size:40 final size:40
Alignment explanation
Indices: 66256331--66256678 Score: 511
Period size: 40 Copynumber: 8.7 Consensus size: 40
66256321 CCAGCATGAT
* * * * *
66256331 TGCTCTTTGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * *
66256371 TGCTCTTCGAGG-TTTAGCACGGATATATTACTAGCACAAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
66256411 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66256451 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66256491 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66256531 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66256571 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66256611 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
66256651 TGCTCTTTGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
66256679 GTCGAGACCT
Statistics
Matches: 278, Mismatches: 28, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 5 0.02
40 271 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:66259123 original size:49 final size:47
Alignment explanation
Indices: 66258903--66259403 Score: 788
Period size: 47 Copynumber: 10.6 Consensus size: 47
66258893 CCCTTCGGGA
* * * * * *
66258903 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66258950 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66258997 CTCATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66259043 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66259090 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66259139 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66259188 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66259235 CTTATCACATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66259282 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66259331 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66259378 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
66259404 CACAATTATC
Statistics
Matches: 423, Mismatches: 26, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
46 45 0.11
47 240 0.57
49 138 0.33
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66259209 original size:96 final size:94
Alignment explanation
Indices: 66258903--66259403 Score: 788
Period size: 96 Copynumber: 5.3 Consensus size: 94
66258893 CCCTTCGGGA
* * * * * * * *
66258903 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
66258968 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
66258997 CTCATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
66259061 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
66259090 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
66259155 ACACTTTCACATTCATCACATTGGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
66259188 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
66259253 TTTCACATTCATTACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
66259282 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
66259347 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
66259378 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
66259404 CACAATTATC
Statistics
Matches: 378, Mismatches: 22, Indels: 14
0.91 0.05 0.03
Matches are distributed among these distances:
93 58 0.15
94 93 0.25
95 30 0.08
96 152 0.40
98 45 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:66259466 original size:143 final size:139
Alignment explanation
Indices: 66258903--66259415 Score: 645
Period size: 143 Copynumber: 3.6 Consensus size: 139
66258893 CCCTTCGGGA
* * * * * * * * *
66258903 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *** *
66258968 TTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATCACA
66 ATTCACA-TCA-CA-ATTATCCATTAGGCCTTATCACATATATATACACTTTCACATT-ATCACA
* *
66259031 TCGG-CATTAGGC
127 TTGGCCATTCGGC
66259043 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
***
66259108 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 A--TTCACA-TCA-CA-ATTATCCATTAGGCCTTATCACATATATATACACTTTCACATT-ATCA
66259173 CATTGGCCATTCGGC
125 CATTGGCCATTCGGC
* *
66259188 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * ***
66259253 TTTCACATTCATTACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 ATTCACA-TCA-CA-ATTATCCATTAGGCCTTATCACATATATATACACTTTCACATT-ATCACA
66259318 TTGGCCATTCGGC
127 TTGGCCATTCGGC
66259331 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
66259396 ATTCACATCACAATTATCCA
66 ATTCACATCACAATTATCCA
66259416 AATATACTTC
Statistics
Matches: 344, Mismatches: 24, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
140 61 0.18
141 1 0.00
142 38 0.11
143 145 0.42
144 29 0.08
145 70 0.20
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (139 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ATTCACATCACAATTATCCATTAGGCCTTATCACATATATATACACTTTCACATTATCACATTGG
CCATTCGGC
Found at i:66260985 original size:56 final size:56
Alignment explanation
Indices: 66260917--66261036 Score: 204
Period size: 56 Copynumber: 2.1 Consensus size: 56
66260907 TATTAGTTTA
66260917 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATATT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATATT
* * * *
66260973 TTGCCTATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACTTGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATATT
66261029 TTGCCCAT
1 TTGCCCAT
66261037 CATCCCTTGT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.47
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATATT
Found at i:66267030 original size:20 final size:20
Alignment explanation
Indices: 66266994--66267031 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
66266984 TTAAAATAAA
*
66266994 ATAAAAGTAAAAGTAAAAAC
1 ATAAAAGTAAAAATAAAAAC
66267014 ATAAAA-TAATAAATAAAA
1 ATAAAAGTAA-AAATAAAA
66267032 GTTTTTAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (20 bp):
ATAAAAGTAAAAATAAAAAC
Found at i:66275801 original size:87 final size:87
Alignment explanation
Indices: 66275655--66275831 Score: 336
Period size: 87 Copynumber: 2.0 Consensus size: 87
66275645 ATAATACACA
* *
66275655 AAAGTTTATCTCATTTTAAAAATGTCAAGTATTGTTGTCGGATTCATCCGTTAACTTCATCATTG
1 AAAGTTTATCTCATTTTAAAAATGTCAAGTATTGCTGCCGGATTCATCCGTTAACTTCATCATTG
66275720 TACACATGGATATGCTTTTAAT
66 TACACATGGATATGCTTTTAAT
66275742 AAAGTTTATCTCATTTTAAAAATGTCAAGTATTGCTGCCGGATTCATCCGTTAACTTCATCATTG
1 AAAGTTTATCTCATTTTAAAAATGTCAAGTATTGCTGCCGGATTCATCCGTTAACTTCATCATTG
66275807 TACACATGGATATGCTTTTAAT
66 TACACATGGATATGCTTTTAAT
66275829 AAA
1 AAA
66275832 TTTTCTATTC
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 88 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40
Consensus pattern (87 bp):
AAAGTTTATCTCATTTTAAAAATGTCAAGTATTGCTGCCGGATTCATCCGTTAACTTCATCATTG
TACACATGGATATGCTTTTAAT
Found at i:66283018 original size:47 final size:47
Alignment explanation
Indices: 66282965--66283094 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
66282955 GTACGAATAA
* * *
66282965 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGTGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGAGAAGT
* * *
66283012 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGAGAAGT
* * **
66283059 TACCTTAATTTGGCTATGGGTTATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
66283095 TATCTATTGT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGGGAGAAGT
Found at i:66306873 original size:49 final size:49
Alignment explanation
Indices: 66306769--66307133 Score: 181
Period size: 46 Copynumber: 7.7 Consensus size: 49
66306759 GCTTAAGATA
* * * *
66306769 CCGACGCCATGTCCCAGACATGGTCTTACAATGGCTTTCATATAGCGAGG
1 CCGATGCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATATAGCGAGG
* * *
66306819 CCGATGCTATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCG-GTG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATAGCGAG-G
* * * * *
66306868 TCGATGCCATGTCCCAGACAGGTCTTACACT-G-ACACACA-A-C-AAG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATAGCGAGG
** ** * * * *
66306912 CTAACACCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCGCAACG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCT-CATATAGCGAGG
* * * * * * *
66306961 TCGATG-CATGTCCCAGACATGTCCTACACTAGCTCTCGTCT--CAATG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATAGCGAGG
* * * * * * **
66307007 CTGATG-CATGTCCTATACATGTCTTACACTGGCT-TAAATATCTCGAGG
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCT-CATATAGCGAGG
* * *
66307055 CTGATG-CATGTCCCAGAC-GTGTCTTACACTGGCTCTC--ATA-CTGTGG
1 CCGATGCCATGTCCCAGACAG-GTCTTACACTAGCTCTCATATAGC-GAGG
** *
66307101 TTGATG-CATGTCCCAGACATGTCTTACACTAGC
1 CCGATGCCATGTCCCAGACAGGTCTTACACTAGC
66307134 ACACATATCA
Statistics
Matches: 243, Mismatches: 56, Indels: 36
0.73 0.17 0.11
Matches are distributed among these distances:
44 27 0.11
45 4 0.02
46 71 0.29
47 3 0.01
48 64 0.26
49 56 0.23
50 18 0.07
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATAGCGAGG
Found at i:66307048 original size:94 final size:94
Alignment explanation
Indices: 66306919--66307133 Score: 247
Period size: 94 Copynumber: 2.3 Consensus size: 94
66306909 AAGCTAACAC
* ** *
66306919 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCAACG-TCGATGCATGTCCCAGACATGT
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCAAGGCT-GATGCATGTCCCAGACATGT
*
66306983 CCTACACTAGCTCTCGT-CTCAAT-GCTGATG
65 CCTACACTAGCTCTCATACT--ATGGCTGATG
* * * * * *
66307013 CATGTCCTATACATGTCTTACACTGGCTTAAATATCTCGAGGCTGATGCATGTCCCAGACGTGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCAAGGCTGATGCATGTCCCAGACATGTC
* * * *
66307078 TTACACTGGCTCTCATACTGTGGTTGATG
66 CTACACTAGCTCTCATACTATGGCTGATG
66307107 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
66307134 ACACATATCA
Statistics
Matches: 100, Mismatches: 18, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
93 1 0.01
94 96 0.96
95 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCAAGGCTGATGCATGTCCCAGACATGTC
CTACACTAGCTCTCATACTATGGCTGATG
Found at i:66307116 original size:46 final size:47
Alignment explanation
Indices: 66306776--66307130 Score: 196
Period size: 48 Copynumber: 7.5 Consensus size: 47
66306766 ATACCGACGC
* * * *
66306776 CATGTCCCAGACATGGTCTTACAATGGCTTTCATA-TAGCGAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATACT--CGTGGCTGATG
* * *
66306825 CTATGTCCCAGACAGGTCTTACACTAGCTCTCAT-CTATCGGTGTC-GATG
1 C-ATGTCCCAGACATGTCTTACACTGGCTCTCATAC--TC-GTGGCTGATG
* * * * ** * **
66306874 CCATGTCCCAGACAGGTCTTACACTGACACACA-A--C-AAGCTAACAC
1 -CATGTCCCAGACATGTCTTACACTGGCTCTCATACTCGTGGCTGA-TG
* * * ***
66306919 CATGTCCCAGACAGGTCTTACACTAGCT-TGTATA-TCGCAACGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATACTCGTGGC-T-GATG
* * * *
66306967 CATGTCCCAGACATGTCCTACACTAGCTCTCGT-CTCAAT-GCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATACTC-GTGGCTGATG
* * * *
66307013 CATGTCCTATACATGTCTTACACTGGCT-TAAATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATA-CTCGTGGCTGATG
* *
66307061 CATGTCCCAGACGTGTCTTACACTGGCTCTCATACT-GTGGTTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATACTCGTGGCTGATG
66307107 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
66307131 AGCACACATA
Statistics
Matches: 235, Mismatches: 48, Indels: 49
0.71 0.14 0.15
Matches are distributed among these distances:
43 1 0.00
44 27 0.11
45 3 0.01
46 61 0.26
47 5 0.02
48 69 0.29
49 52 0.22
50 16 0.07
51 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATACTCGTGGCTGATG
Found at i:66315977 original size:24 final size:24
Alignment explanation
Indices: 66315950--66315995 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
66315940 AGAGGGTAAT
*
66315950 GAAGACGGAGATGAAGACGAAGCA
1 GAAGACAGAGATGAAGACGAAGCA
**
66315974 GAAGGTAGAGATGAAGACGAAG
1 GAAGACAGAGATGAAGACGAAG
66315996 GTGGAAATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.09, G:0.39, T:0.07
Consensus pattern (24 bp):
GAAGACAGAGATGAAGACGAAGCA
Found at i:66315989 original size:18 final size:18
Alignment explanation
Indices: 66315974--66316008 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
66315964 AGACGAAGCA
*
66315974 GAAGGTAGAGATGAAGAC
1 GAAGGTAGAAATGAAGAC
*
66315992 GAAGGTGGAAATGAAGA
1 GAAGGTAGAAATGAAGA
66316009 TGAGCATGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.03, G:0.40, T:0.11
Consensus pattern (18 bp):
GAAGGTAGAAATGAAGAC
Done.