Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 204 of 253
Found at i:67095633 original size:42 final size:42
Alignment explanation
Indices: 67095520--67095643 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 42
67095510 ATTACCGTAC
* * *
67095520 CAATGTCATATCCTAGATATGGTCTTACATGTAATCTCGTAT
1 CAATGCCATATCCTAGATATGGTCTTACACGTAATCTCATAT
* * * * *
67095562 CGATGACAATAGCCAAGCTATGGTCTTACACG-AAGTCTCATAT
1 CAATG-CCATATCCTAGATATGGTCTTACACGTAA-TCTCATAT
*
67095605 CAATGCCATATCCTATATATGGTCTTACACGTAATCTCA
1 CAATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
67095644 GTAACCTTAA
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
CAATGCCATATCCTAGATATGGTCTTACACGTAATCTCATAT
Found at i:67096985 original size:32 final size:31
Alignment explanation
Indices: 67096914--67096985 Score: 76
Period size: 32 Copynumber: 2.3 Consensus size: 31
67096904 TTATCGTTTC
*
67096914 TTCATATA-CATATATCATCCATTTCAATAT
1 TTCATATATCATATACCATCCATTTCAATAT
* *
67096944 ATCAATATATCATGTACCAT-CATTTCCAAGTAT
1 TTC-ATATATCATATACCATCCATTT-CAA-TAT
67096977 TTCATATAT
1 TTCATATAT
67096986 ATACTTGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
30 2 0.06
31 10 0.29
32 17 0.50
33 5 0.15
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.42
Consensus pattern (31 bp):
TTCATATATCATATACCATCCATTTCAATAT
Found at i:67097308 original size:14 final size:14
Alignment explanation
Indices: 67097289--67097325 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
67097279 GTAATCGTAG
67097289 TACGTCGTTGGATT
1 TACGTCGTTGGATT
67097303 TACGTCGTTGGATT
1 TACGTCGTTGGATT
*
67097317 TACATCGTT
1 TACGTCGTT
67097326 TCATAACACG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.43
Consensus pattern (14 bp):
TACGTCGTTGGATT
Found at i:67103063 original size:313 final size:308
Alignment explanation
Indices: 67102475--67103104 Score: 787
Period size: 313 Copynumber: 2.0 Consensus size: 308
67102465 AGAGAGAGAA
* * *
67102475 AAAAAAGATATTTCATTGTATATTATTTGTGTATAATAAAAATTAGTATTCGAGCTTTTAATTTT
1 AAAAAGGATATTTCATTGTATATTATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTTT
* ** * *
67102540 TTATTACGCTTCCAACAAGTGGTATCCGAGCTAGGTTTGTGTCGATGTCATAATGGCAAACATGA
66 TTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTTCATGTCAATGTCACAATGGCAAACATGA
** * * * * *
67102605 GTCATAGATCCTGAAATTGACAAAGACAAATTGGAGCAATTGGAGCATCCAAATGAAGGCTTTGC
131 GTCATAGATCCCAAAATTAACAAAGAAAAATTAGAACAATTGGAACATCCAAATGAAGGCTTTGC
* * * *** * *
67102670 TTGGTTTTCAAGATTGTTGGGACATTGTCGAAGAAGGATATTTCGAGCCCGAAAATGCAACTGCC
196 TCGATTCTCAAGATTGTTACAACATTGTCAAAGAAGGATATTTCGAGCCCGAAAATGCAACTACC
*
67102735 AAAGCGGCTTTGACAAACAAAGAAAAAAGAGTATTGAAAGAAGCTAGT
261 AAAGCGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTAGT
* * * *
67102783 AAAAAGGATATTTCTATTGTGTGTTATTTGTATGTAATAAAAATTAGTATTTGAGCTATTAATTT
1 AAAAAGGATATTTC-ATTGTATATTATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTT
* * *
67102848 TTTATTACGCTTCTAACAAGTAGTATCCGAGTTAGGTTCATGTCAATGTCACAATGGTAAACATG
65 TTTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTTCATGTCAATGTCACAATGGCAAACATG
* * *
67102913 ATTCAATCGTAGATCCCAAAATTAACAAAGAAAAATTATAACAATTGGAACATCCAGATGAAGGC
130 AGTC-A---TAGATCCCAAAATTAACAAAGAAAAATTAGAACAATTGGAACATCCAAATGAAGGC
* * * ** * *
67102978 TTTGCTCGATTCTCAAGATTGTTACAACGTTGTCAAAGAAGGATATGTT-TAGTCTTAAGATGTA
191 TTTGCTCGATTCTCAAGATTGTTACAACATTGTCAAAGAAGGATAT-TTCGAGCCCGAAAATGCA
* * * *
67103042 GCTACCGAAGTGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTCGT
255 ACTACCAAAGCGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTAGT
67103096 -AAAAGGATA
1 AAAAAGGATA
67103105 AGAGGGCATT
Statistics
Matches: 271, Mismatches: 45, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
308 13 0.05
309 104 0.38
310 1 0.00
312 9 0.03
313 142 0.52
314 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (308 bp):
AAAAAGGATATTTCATTGTATATTATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTTT
TTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTTCATGTCAATGTCACAATGGCAAACATGA
GTCATAGATCCCAAAATTAACAAAGAAAAATTAGAACAATTGGAACATCCAAATGAAGGCTTTGC
TCGATTCTCAAGATTGTTACAACATTGTCAAAGAAGGATATTTCGAGCCCGAAAATGCAACTACC
AAAGCGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTAGT
Found at i:67110415 original size:271 final size:271
Alignment explanation
Indices: 67109928--67110456 Score: 916
Period size: 271 Copynumber: 2.0 Consensus size: 271
67109918 TTTGATAAGC
67109928 TTCATTTTCTGCATTTCGGGTACACACCTGGTAATGATTTGATGCGAGAACTATCCCGAGCCTTC
1 TTCATTTTCTGCATTTCGGGTACACACCTGGTAATGATTTGATGCGAGAACTATCCCGAGCCTTC
* * * *
67109993 CAGAACCTAAAAACCAATATAACAACACTCAATTTTAATCTTTTTACACCTGATTGAATCGAAAA
66 CAAAACCTAAAAACCAACATAACAACACTCAATTTTAATCTTTTTACACCCGATTGAACCGAAAA
67110058 CCCGAAATCAACCATAACTTAAATCAAACACTTACCACTTACTCCAACACTGTGAACGATTAACT
131 CCCGAAATCAACCATAACTTAAATCAAACACTTACCACTTACTCCAACACTGTGAACGATTAACT
* * *
67110123 ACGATCCCGTAAGATTAGAATCACGATCTTCTCGACTCACTGCTGCCCAAAACAAAGGTATAATC
196 ACGATCCCGTAAGAATAGAATCACAACCTTCTCGACTCACTGCTGCCCAAAACAAAGGTATAATC
67110188 CAATCAACACT
261 CAATCAACACT
** *
67110199 TTCATTTTCTGCATTTTTGGTACACACCTGGTAATGATTTGATGCGATAACTATCCCGAGCCTTC
1 TTCATTTTCTGCATTTCGGGTACACACCTGGTAATGATTTGATGCGAGAACTATCCCGAGCCTTC
*
67110264 CAAAACCTAAAAACCAACATAACAACGCTCAATTTTAATCTTTTTACACCCGATTGAACCGAAAA
66 CAAAACCTAAAAACCAACATAACAACACTCAATTTTAATCTTTTTACACCCGATTGAACCGAAAA
* *
67110329 CCCGAAATCAACCATAACTTAAATCAAGCACTTACCACTTATTCCAACACTGTGAAAC-ATTAAC
131 CCCGAAATCAACCATAACTTAAATCAAACACTTACCACTTACTCCAACACTGTG-AACGATTAAC
*
67110393 TACGATCCCGTAAGAATAGAATCACAACCTTCTCGACTCGCTGCTGCCCAAAACAAAGGTATAA
195 TACGATCCCGTAAGAATAGAATCACAACCTTCTCGACTCACTGCTGCCCAAAACAAAGGTATAA
67110457 CCCCAATTAA
Statistics
Matches: 243, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
271 240 0.99
272 3 0.01
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.26
Consensus pattern (271 bp):
TTCATTTTCTGCATTTCGGGTACACACCTGGTAATGATTTGATGCGAGAACTATCCCGAGCCTTC
CAAAACCTAAAAACCAACATAACAACACTCAATTTTAATCTTTTTACACCCGATTGAACCGAAAA
CCCGAAATCAACCATAACTTAAATCAAACACTTACCACTTACTCCAACACTGTGAACGATTAACT
ACGATCCCGTAAGAATAGAATCACAACCTTCTCGACTCACTGCTGCCCAAAACAAAGGTATAATC
CAATCAACACT
Found at i:67112372 original size:313 final size:305
Alignment explanation
Indices: 67111791--67112418 Score: 875
Period size: 313 Copynumber: 2.0 Consensus size: 305
67111781 TAGAGAGAGA
* *
67111791 AAAAAAGATATTTTATTGTATGTTATTTGTGTATAATAAAAATTAGTATTCGAGCTTTTAATTTT
1 AAAAAAGATATTTTATTGTATGTTATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTTT
*
67111856 TTATTACGCTTCCAACAAGTGGTATCCGAGCTAGGTTTGTGCAATCACAATGGAAAACATGATTC
66 TTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTTTGTGCAATCACAATGGAAAACATGATTC
** * * * *
67111921 ATAGATCCTGAAATTGACAAAGATAAATTATAGCAATTGGAGCATCCAGATGAAGGCTTTGCTCG
131 ATAGATCCCAAAATTAACAAAGACAAATTATAACAATTGGAACATCCAGATGAAGGCTTTGCTCG
* **
67111986 ATTCTCAAGATTGTTGAGACGTTGTCAAAGAAGGATATTTCGAGCCCGAAAATGCAACTGTCAAA
196 ATTCTCAAGATTGTTGAGACGTTGTCAAAGAAGGATATGTCGAGCCCGAAAATGCAACTACCAAA
* * *
67112051 GTGGCTTTGACAAACAAAG-AAAAAGAAGTATTGGAAGAAGCTCGT
261 GTGGCTTTGACAAACAAAGAAAAAAG-AGTATAGAAAGAAGCTCAT
* * * *
67112096 AAAAAGGATATTTCTATTGTGTGTTATTTGTATGTAATAAAAATTAGTATTTGAGCTATTAATTT
1 AAAAAAGATATTT-TATTGTATGTTATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTT
* * *
67112161 TTTATTACGCTTCTAACAAGTAGTATCTGAGCTAGGTTCATGT-CAATGTCACAATGGTAAACAT
65 TTTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTT--TGTGCAA--TCACAATGGAAAACAT
*
67112225 GATTCAATCGTAGATCCCAAAATTAACAAAGACAAATTATAACAATTGGAACATCTAGATGAAGG
126 GATTC-A---TAGATCCCAAAATTAACAAAGACAAATTATAACAATTGGAACATCCAGATGAAGG
* ** *
67112290 CTTTGCTCGATTCTCAAGATTGTTGCA-ACGTTGTCAAAGAAGGATATGTCGAGTCTTAAGATGC
187 CTTTGCTCGATTCTCAAGATTGTTG-AGACGTTGTCAAAGAAGGATATGTCGAGCCCGAAAATGC
* *
67112354 AGCTACCGAAGTGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTCAT
251 AACTACCAAAGTGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTCAT
67112409 AAAAAAGATA
1 AAAAAAGATA
67112419 AGAGGGCATT
Statistics
Matches: 282, Mismatches: 30, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
305 12 0.04
306 81 0.29
307 3 0.01
308 3 0.01
309 20 0.07
310 1 0.00
313 155 0.55
314 7 0.02
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (305 bp):
AAAAAAGATATTTTATTGTATGTTATTTGTATATAATAAAAATTAGTATTCGAGCTATTAATTTT
TTATTACGCTTCCAACAAGTAGTATCCGAGCTAGGTTTGTGCAATCACAATGGAAAACATGATTC
ATAGATCCCAAAATTAACAAAGACAAATTATAACAATTGGAACATCCAGATGAAGGCTTTGCTCG
ATTCTCAAGATTGTTGAGACGTTGTCAAAGAAGGATATGTCGAGCCCGAAAATGCAACTACCAAA
GTGGCTTTGACAAACAAAGAAAAAAGAGTATAGAAAGAAGCTCAT
Found at i:67114881 original size:40 final size:41
Alignment explanation
Indices: 67114790--67115013 Score: 149
Period size: 40 Copynumber: 5.6 Consensus size: 41
67114780 TATTCGAATG
* *
67114790 ATATCCGGGCTAAG-TCCCGAAGGCT-TTTGTGCTAGGTGACT
1 ATATCCGGACTAAGAT-CCGAAGG-TATTTGTGCAAGGTGACT
* * *
67114831 ATAACCGGACTAAGATCCGAAGGTATTCGTGCAAGTTG-CT
1 ATATCCGGACTAAGATCCGAAGGTATTTGTGCAAGGTGACT
* * * * *
67114871 ATATCCGGACTAAGACCCGAAGGCATTTGTGCTA-GCGATT
1 ATATCCGGACTAAGATCCGAAGGTATTTGTGCAAGGTGACT
* * * * * *
67114911 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACT
1 ATATCCGGACTAAGATCCGAAGGTATTTGTGCAAGGTGACT
* * * *
67114951 ATATCTGGGA-TAAG-TCCCGAAGGTATTTATGCTA-GTGACC
1 ATATC-CGGACTAAGAT-CCGAAGGTATTTGTGCAAGGTGACT
* * *
67114991 ACATCCGGGCTAAGACCCGAAGG
1 ATATCCGGACTAAGATCCGAAGG
67115014 CCTTGTGTAA
Statistics
Matches: 148, Mismatches: 28, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
39 3 0.02
40 113 0.76
41 31 0.21
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (41 bp):
ATATCCGGACTAAGATCCGAAGGTATTTGTGCAAGGTGACT
Found at i:67114970 original size:80 final size:79
Alignment explanation
Indices: 67114790--67115014 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 79
67114780 TATTCGAATG
* * * * * *
67114790 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGT
1 ATAT-CGGGATAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
67114855 ATTCGTGCAAGTTGCT
64 ATTCGTGCAAGTCGCT
* * * * *
67114871 ATATCCGGACTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCGGGA-TAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
67114936 TTTGTGCTAG-CGACT
65 TTCGTGCAAGTCG-CT
* * * *
67114951 ATATCTGGGATAAGTCCCGAAGGTATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGC
1 ATATC-GGGATAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
67115015 CTTGTGTAAG
Statistics
Matches: 118, Mismatches: 23, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
79 1 0.01
80 88 0.75
81 29 0.25
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCGGGATAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTCGCT
Found at i:67115007 original size:120 final size:121
Alignment explanation
Indices: 67114790--67115014 Score: 287
Period size: 120 Copynumber: 1.9 Consensus size: 121
67114780 TATTCGAATG
** * *
67114790 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGT
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGT
* * *
67114855 ATTCGTGCAAGTTGCTATATCCGGACTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCAAGTTGCCACATCCGGACTAAGACCCGAAGGCATTTGTGCTAGCGATT
* *
67114911 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCTGGGA-TAAG-TCCCGAAG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAAC-CGGACTAAGAT-CCGAAG
* * *
67114973 GTATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
64 GTATTCATGCAAGTTG-CCACATCCGGACTAAGACCCGAAGGC
67115015 CTTGTGTAAG
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
119 3 0.03
120 52 0.58
121 34 0.38
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGT
ATTCATGCAAGTTGCCACATCCGGACTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:67123087 original size:40 final size:40
Alignment explanation
Indices: 67122963--67123187 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
67122953 TATTCGAATG
* *
67122963 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
67123004 ATAACCGGACTAAGATCCGAAGGCATTCGGGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* * *
67123044 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
67123084 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
67123124 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
67123164 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
67123188 CTTGTGCAAG
Statistics
Matches: 155, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.81
41 28 0.18
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:67126091 original size:33 final size:33
Alignment explanation
Indices: 67126054--67126119 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
67126044 GAAAAGAAAA
67126054 TTGAAGGATTATTTTTCAGTGATGACAAAGACG
1 TTGAAGGATTATTTTTCAGTGATGACAAAGACG
* *
67126087 TTGAAGGATTATTTTTCATTGATGATAAAGACG
1 TTGAAGGATTATTTTTCAGTGATGACAAAGACG
67126120 ACGACTTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (33 bp):
TTGAAGGATTATTTTTCAGTGATGACAAAGACG
Found at i:67147279 original size:5 final size:5
Alignment explanation
Indices: 67147269--67147355 Score: 111
Period size: 5 Copynumber: 17.4 Consensus size: 5
67147259 ACTTTATGTT
67147269 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
* * * * * * *
67147319 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TT
67147356 TTATATATAA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
5 81 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (5 bp):
TTATA
Found at i:67151452 original size:55 final size:55
Alignment explanation
Indices: 67151343--67151452 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 55
67151333 CGGGCGTGTA
* * * * * *
67151343 ACACGCTCGTGCCCACTACCCGTGGTCGAAACTGTTAAAATTACACGGGTGTGCG
1 ACACGCCCGTCCCCACTACCCGTGGTCAAAACTGTCAAAATAACACGCGTGTGCG
67151398 ACACGCCCGTCCCCACTACCCGTGGTCAAAACTGTCAAAATAACAC-CGTCGTGCG
1 ACACGCCCGTCCCCACTACCCGTGGTCAAAACTGTCAAAATAACACGCGT-GTGCG
67151453 CATATGTACA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 2 0.04
55 46 0.96
ACGTcount: A:0.25, C:0.34, G:0.22, T:0.19
Consensus pattern (55 bp):
ACACGCCCGTCCCCACTACCCGTGGTCAAAACTGTCAAAATAACACGCGTGTGCG
Found at i:67151963 original size:17 final size:18
Alignment explanation
Indices: 67151928--67151966 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
67151918 TTTTTGAAGA
* *
67151928 ATTTTATTTATTATTTTT
1 ATTTTACTTATTATCTTT
67151946 ATTTTACTT-TTATCTTT
1 ATTTTACTTATTATCTTT
67151963 ATTT
1 ATTT
67151967 ATTTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
ATTTTACTTATTATCTTT
Found at i:67156042 original size:31 final size:31
Alignment explanation
Indices: 67155987--67156051 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
67155977 ATTTGGTTAT
* *
67155987 TGAATTATTCAAAAGTTTTCATTTAAGTCAC
1 TGAACTATTCAAAAATTTTCATTTAAGTCAC
* *
67156018 TGAACTATTTAAAAATTTTTATTTAAGTCAC
1 TGAACTATTCAAAAATTTTCATTTAAGTCAC
67156049 TGA
1 TGA
67156052 GTTGTTAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (31 bp):
TGAACTATTCAAAAATTTTCATTTAAGTCAC
Found at i:67164271 original size:24 final size:23
Alignment explanation
Indices: 67164205--67164271 Score: 82
Period size: 22 Copynumber: 2.8 Consensus size: 23
67164195 AAAAATTATT
*
67164205 TAAATTAGGGTTAATGGTTTTTAAA
1 TAAATTAGGGTT-A-GGGTTTTAAA
*
67164230 TAAATTA-AGTTAGGGTTTTAAA
1 TAAATTAGGGTTAGGGTTTTAAA
67164252 TAAATTAGGGCTTAGGGTTT
1 TAAATTAGGG-TTAGGGTTT
67164272 ATGGTTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
22 16 0.43
23 2 0.05
24 12 0.32
25 7 0.19
ACGTcount: A:0.34, C:0.01, G:0.22, T:0.42
Consensus pattern (23 bp):
TAAATTAGGGTTAGGGTTTTAAA
Found at i:67164317 original size:34 final size:33
Alignment explanation
Indices: 67164263--67164326 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
67164253 AAATTAGGGC
*
67164263 TTAGGGTTTATGGTTTTAAATAGATTAAGTAAA
1 TTAGGGTTTATGGTTTTAAATAAATTAAGTAAA
67164296 TTAGGGTTCTA-GGATTTTAAATAAATTAAGT
1 TTAGGGTT-TATGG-TTTTAAATAAATTAAGT
67164327 TACTATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 10 0.36
34 18 0.64
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.42
Consensus pattern (33 bp):
TTAGGGTTTATGGTTTTAAATAAATTAAGTAAA
Found at i:67164417 original size:100 final size:100
Alignment explanation
Indices: 67164305--67164487 Score: 285
Period size: 100 Copynumber: 1.8 Consensus size: 100
67164295 ATTAGGGTTC
* * **
67164305 TAGGATTTTAAATAAATTAAGTTACTATTTTAAATAAATTAAATTAGGGTTTAGGATTTATTAAA
1 TAGGATTTTAAATAAATTAAGTTACGATTTAAAATAAATTAAATTAGCATTTAGGATTTATTAAA
*
67164370 TTAGGGTTTATATTTTTTAAATAGATTAAGTAAGT
66 TTAAGGTTTATATTTTTTAAATAGATTAAGTAAGT
* * * *
67164405 TAGGATTTTAAATAAATTAAGTTAGGGTTTAAAATAAATTAAATTAGCATTTCGGGTTTATTAAA
1 TAGGATTTTAAATAAATTAAGTTACGATTTAAAATAAATTAAATTAGCATTTAGGATTTATTAAA
67164470 TTAAGGTTTATATTTTTT
66 TTAAGGTTTATATTTTTT
67164488 GTTTAAAATT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 74 1.00
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (100 bp):
TAGGATTTTAAATAAATTAAGTTACGATTTAAAATAAATTAAATTAGCATTTAGGATTTATTAAA
TTAAGGTTTATATTTTTTAAATAGATTAAGTAAGT
Found at i:67164428 original size:22 final size:22
Alignment explanation
Indices: 67164400--67164456 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
67164390 ATAGATTAAG
*
67164400 TAAGTTAGGATTTTAAATAAAT
1 TAAGTTAGGATTTAAAATAAAT
*
67164422 TAAGTTAGGGTTTAAAATAAAT
1 TAAGTTAGGATTTAAAATAAAT
* *
67164444 TAAATTAGCATTT
1 TAAGTTAGGATTT
67164457 CGGGTTTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.44, C:0.02, G:0.14, T:0.40
Consensus pattern (22 bp):
TAAGTTAGGATTTAAAATAAAT
Found at i:67164563 original size:28 final size:29
Alignment explanation
Indices: 67164490--67164572 Score: 105
Period size: 28 Copynumber: 2.9 Consensus size: 29
67164480 TATTTTTTGT
*
67164490 TTAAAATTAATTAAATTAGGGTTCTAAGAT
1 TTAAAATTAATTAAATTAGGGTT-TAAGAG
* * * *
67164520 TTTAAATAAATTAAATTAGGGTTT-GGGG
1 TTAAAATTAATTAAATTAGGGTTTAAGAG
67164548 TTAAAATTAATTAAATTAGGGTTTA
1 TTAAAATTAATTAAATTAGGGTTTA
67164573 GTTTTTTTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
28 23 0.51
29 1 0.02
30 21 0.47
ACGTcount: A:0.41, C:0.01, G:0.17, T:0.41
Consensus pattern (29 bp):
TTAAAATTAATTAAATTAGGGTTTAAGAG
Found at i:67164785 original size:125 final size:126
Alignment explanation
Indices: 67164630--67164874 Score: 377
Period size: 125 Copynumber: 2.0 Consensus size: 126
67164620 ATTTTTACCA
**
67164630 TGAAAAAATAATTTTGAAAAGACGTTTCTGAACAAATAGTGTCAAAAATGCTGT-AAGCAGGATG
1 TGAAAAAATAATTTTGAAAAGACGTTTCTGAACAAATAGTGTCAAAAACACT-TCAAGCAGGATG
* * * *
67164694 CACTGTCAGCAAAAATAC-AGAAACAGCTCCCATGTGGACGCTCTTTTGCTATAGTTGTTCC
65 CAATGTCAGCAAAAATACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTATAGTTGTTCC
*
67164755 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATGC
1 TGAAAAAATAATTTTGAAAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATGC
* * *
67164820 AATGTCAGCAAAATTTCTAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTATAGT
66 AATGTCAGCAAAAATACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTATAGT
67164875 AGCTCATACT
Statistics
Matches: 108, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
124 1 0.01
125 74 0.69
126 33 0.31
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (126 bp):
TGAAAAAATAATTTTGAAAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATGC
AATGTCAGCAAAAATACTAAAAAAAGCTCCCACGTGGACGCTCTTTTGCTATAGTTGTTCC
Found at i:67168495 original size:30 final size:30
Alignment explanation
Indices: 67168461--67168526 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
67168451 GTTGAGGTAT
* * *
67168461 TGGGCCATGTGATTGTGTGGGTGTTGTTGA
1 TGGGCCAGGTGATTGTGTGGGCGCTGTTGA
*
67168491 TGGGCCCGGTGATTGTGTGGGCGCTGTTGA
1 TGGGCCAGGTGATTGTGTGGGCGCTGTTGA
67168521 TGGGCC
1 TGGGCC
67168527 TGTCCCATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.08, C:0.14, G:0.45, T:0.33
Consensus pattern (30 bp):
TGGGCCAGGTGATTGTGTGGGCGCTGTTGA
Found at i:67169056 original size:7 final size:7
Alignment explanation
Indices: 67169024--67169055 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
67169014 TTATATACAT
67169024 AATACTA
1 AATACTA
67169031 AATACTA
1 AATACTA
67169038 AATACTA
1 AATACTA
*
67169045 AATATTA
1 AATACTA
67169052 AATA
1 AATA
67169056 TGAAACGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.31
Consensus pattern (7 bp):
AATACTA
Found at i:67169092 original size:15 final size:15
Alignment explanation
Indices: 67169069--67169100 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
67169059 AACGACTATT
67169069 TTATGTATATATATA
1 TTATGTATATATATA
67169084 TTAT-T-TATATATA
1 TTATGTATATATATA
67169097 TTAT
1 TTAT
67169101 TTAATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 12 0.71
14 1 0.06
15 4 0.24
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
TTATGTATATATATA
Found at i:67169094 original size:13 final size:13
Alignment explanation
Indices: 67169076--67169103 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
67169066 ATTTTATGTA
67169076 TATATATATTATT
1 TATATATATTATT
67169089 TATATATATTATT
1 TATATATATTATT
67169102 TA
1 TA
67169104 ATACTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATATATATTATT
Found at i:67170085 original size:54 final size:51
Alignment explanation
Indices: 67170003--67170118 Score: 178
Period size: 54 Copynumber: 2.2 Consensus size: 51
67169993 AAAAATTTAT
*
67170003 AAAATAAAAATTAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCA
1 AAAATTAAAATTAATTAAAATTACATAAATG--AAAAATATTAAA-AATATTCA
67170057 AAAATTAAAATTAATTAAAATTACATAAATGAAAAATATTAAAAATATTCA
1 AAAATTAAAATTAATTAAAATTACATAAATGAAAAATATTAAAAATATTCA
**
67170108 AAGTTTAAAAT
1 AAAATTAAAAT
67170119 AAATCGTTAC
Statistics
Matches: 59, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
51 17 0.29
52 12 0.20
54 30 0.51
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (51 bp):
AAAATTAAAATTAATTAAAATTACATAAATGAAAAATATTAAAAATATTCA
Found at i:67170886 original size:32 final size:32
Alignment explanation
Indices: 67170850--67170913 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
67170840 TTTAATCACT
67170850 AAAATTCATAATTTTCTTTTATAATGCTGTCA
1 AAAATTCATAATTTTCTTTTATAATGCTGTCA
*
67170882 AAAATTTATAATTTTCTTTTATAATGCTGTCA
1 AAAATTCATAATTTTCTTTTATAATGCTGTCA
67170914 TTTTCTAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.48
Consensus pattern (32 bp):
AAAATTCATAATTTTCTTTTATAATGCTGTCA
Found at i:67172375 original size:23 final size:23
Alignment explanation
Indices: 67172345--67172390 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
67172335 GTTATAAAAG
67172345 TTAACGGGATTATGTGGAATTTT
1 TTAACGGGATTATGTGGAATTTT
67172368 TTAACGGGATTATGTGGAATTTT
1 TTAACGGGATTATGTGGAATTTT
67172391 GTATGTGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.04, G:0.26, T:0.43
Consensus pattern (23 bp):
TTAACGGGATTATGTGGAATTTT
Found at i:67173692 original size:32 final size:32
Alignment explanation
Indices: 67173656--67173752 Score: 176
Period size: 32 Copynumber: 3.0 Consensus size: 32
67173646 TGTATGCATT
*
67173656 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
67173688 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
*
67173720 TTAGCATTTTAATAATTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
67173752 T
1 T
67173753 GATAAGCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGAATGATGGGCA
Found at i:67177500 original size:3 final size:3
Alignment explanation
Indices: 67177492--67177530 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
67177482 AGAATGCTTA
67177492 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
67177531 GCTTTAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:67177937 original size:19 final size:19
Alignment explanation
Indices: 67177909--67177970 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
67177899 AGGGGTGAGC
67177909 AAAA-TTTGATACGATTTG
1 AAAATTTTGATACGATTTG
67177927 AAAATTTTGATA--A----
1 AAAATTTTGATACGATTTG
67177940 AAAATTTTGATACGATTTG
1 AAAATTTTGATACGATTTG
67177959 AAAATTTTGATA
1 AAAATTTTGATA
67177971 AAAAATTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 13
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.32
15 1 0.03
17 1 0.03
18 4 0.11
19 19 0.51
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.40
Consensus pattern (19 bp):
AAAATTTTGATACGATTTG
Found at i:67177945 original size:13 final size:13
Alignment explanation
Indices: 67177927--67177951 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67177917 ATACGATTTG
67177927 AAAATTTTGATAA
1 AAAATTTTGATAA
67177940 AAAATTTTGATA
1 AAAATTTTGATA
67177952 CGATTTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AAAATTTTGATAA
Found at i:67177951 original size:32 final size:32
Alignment explanation
Indices: 67177909--67177978 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
67177899 AGGGGTGAGC
67177909 AAAA-TTTGATACGATTTGAAAATTTTGATAA
1 AAAATTTTGATACGATTTGAAAATTTTGATAA
67177940 AAAATTTTGATACGATTTGAAAATTTTGATAA
1 AAAATTTTGATACGATTTGAAAATTTTGATAA
67177972 AAAATTT
1 AAAATTT
67177979 AAATTTTGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 4 0.11
32 34 0.89
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.40
Consensus pattern (32 bp):
AAAATTTTGATACGATTTGAAAATTTTGATAA
Found at i:67179317 original size:27 final size:25
Alignment explanation
Indices: 67179284--67179356 Score: 83
Period size: 27 Copynumber: 2.8 Consensus size: 25
67179274 TGTAATAATG
67179284 ATATATACACAATATGGTATTAAGAA
1 ATATATACACAATATGGTATTAA-AA
* *
67179310 TATATATATACAATATAGTATTTAAAA
1 -ATATATACACAATATGGTA-TTAAAA
* *
67179337 ATATATACATAAGATGGTAT
1 ATATATACACAATATGGTAT
67179357 AAATATGTAC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.03
26 15 0.38
27 19 0.49
28 4 0.10
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (25 bp):
ATATATACACAATATGGTATTAAAA
Found at i:67179319 original size:29 final size:28
Alignment explanation
Indices: 67179284--67179343 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
67179274 TGTAATAATG
* * *
67179284 ATATATACACAATATGGTA-TTAAGAAT
1 ATATATATACAATATAGTATTTAAAAAT
67179311 ATATATATACAATATAGTATTTAAAAAT
1 ATATATATACAATATAGTATTTAAAAAT
67179339 ATATA
1 ATATA
67179344 CATAAGATGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 17 0.59
28 12 0.41
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.37
Consensus pattern (28 bp):
ATATATATACAATATAGTATTTAAAAAT
Found at i:67179539 original size:21 final size:22
Alignment explanation
Indices: 67179514--67179626 Score: 108
Period size: 21 Copynumber: 5.2 Consensus size: 22
67179504 ACACATATAT
* *
67179514 ATATA-AATAATAGTATTAGAA
1 ATATACAATAATAATATTAAAA
*
67179535 ATATACAAT-ATAATATTAGAA
1 ATATACAATAATAATATTAAAA
*
67179556 ATATACATATAATAGTA-TAAAA
1 ATATACA-ATAATAATATTAAAA
* *
67179578 ATATATAACTAATAATATTAAAT
1 ATATACAA-TAATAATATTAAAA
* *
67179601 ATATATAATAAT-ATATAAAAA
1 ATATACAATAATAATATTAAAA
67179622 ATATA
1 ATATA
67179627 ATATTGAAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
21 36 0.46
22 26 0.33
23 17 0.22
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.35
Consensus pattern (22 bp):
ATATACAATAATAATATTAAAA
Found at i:67179849 original size:21 final size:20
Alignment explanation
Indices: 67179829--67179868 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 20
67179819 ATGTAAATAT
67179829 ATATACATACA-T-ATA-TA
1 ATATACATACACTAATATTA
67179846 ATATACATACACTAATATTA
1 ATATACATACACTAATATTA
67179866 ATA
1 ATA
67179869 ATAATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.55
18 1 0.05
19 3 0.15
20 5 0.25
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (20 bp):
ATATACATACACTAATATTA
Found at i:67179851 original size:17 final size:16
Alignment explanation
Indices: 67179825--67179856 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
67179815 CTATATGTAA
67179825 ATATATATACATACAT
1 ATATATATACATACAT
67179841 ATATAATATACATACA
1 ATAT-ATATACATACA
67179857 CTAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:67179872 original size:3 final size:3
Alignment explanation
Indices: 67179858--67180016 Score: 73
Period size: 3 Copynumber: 52.7 Consensus size: 3
67179848 ATACATACAC
* *
67179858 TAA TAT TAA TAA TAA TAA -AA TAGA -AA TAA TAA TAA TTAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA
* ** * *
67179903 TAA TACGT TAGA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG TAA TGAA
1 TAA TA--A TA-A TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * *
67179951 -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA TAGA -AA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA TAA
* *
67179994 TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
67180017 TGTAAAAAAA
Statistics
Matches: 117, Mismatches: 23, Indels: 32
0.68 0.13 0.19
Matches are distributed among these distances:
2 12 0.10
3 92 0.79
4 11 0.09
5 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:67182108 original size:75 final size:75
Alignment explanation
Indices: 67181919--67182377 Score: 329
Period size: 75 Copynumber: 6.2 Consensus size: 75
67181909 ACTTAATTTG
* * * *
67181919 AAAAGCAGAATTTGAAAATACCTCGACATGTGAT-CTGAGGCTCCACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTC-A-ACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
67181983 GTTG---ATTTTC
63 GTTGATTATTTTC
** * * * * * *
67181993 AAAAATGGAGA-TCAGAATTACCTTAGCGTGTCCTGGGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGA-AAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
67182057 TGATTATTTTC
65 TGATTATTTTC
* * * * *
67182068 AAAAACCGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
67182133 GAATT-TTTTG
66 G-ATTATTTTC
* * * * *
67182143 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
67182208 GA--ATTTT-
66 GATTATTTTC
* * * * * ** * *
67182215 -GAAACAGAAA-TAAAAATTATCTCAGCGTCTCCCAAGGCTCAACTCACCTTTCACAATATGAGT
1 AAAAACAGAAATTGAAAA-TACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
67182278 TGATT-TTTTG
65 TGATTATTTTC
* * * * * * * * * * *
67182288 ACAAACA-ATAATTGAAAATACCTCAGCGTGCCCCGAGGATCGATTCACTTATAGCAATATGAAT
1 AAAAACAGA-AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
67182352 TGA-T-TTTT-
65 TGATTATTTTC
* *
67182360 GAAAACATAAATTGAAAA
1 AAAAACAGAAATTGAAAA
67182378 ACAGAAATTG
Statistics
Matches: 312, Mismatches: 57, Indels: 34
0.77 0.14 0.08
Matches are distributed among these distances:
70 5 0.02
71 47 0.15
72 53 0.17
73 14 0.04
74 58 0.19
75 130 0.42
76 5 0.02
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (75 bp):
AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTATTTTC
Found at i:67182380 original size:14 final size:14
Alignment explanation
Indices: 67182361--67182391 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67182351 TTGATTTTTG
*
67182361 AAAACATAAATTGA
1 AAAACAGAAATTGA
67182375 AAAACAGAAATTGA
1 AAAACAGAAATTGA
67182389 AAA
1 AAA
67182392 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.06, G:0.10, T:0.16
Consensus pattern (14 bp):
AAAACAGAAATTGA
Found at i:67182645 original size:37 final size:36
Alignment explanation
Indices: 67182591--67182664 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 36
67182581 GTTTGTCGTA
67182591 AATGATTTTTGCCTACATGATTATGCTATGAGCTTT
1 AATGATTTTTGCCTACATGATTATGCTATGAGCTTT
67182627 AATGATTTTATGCCTACATGATTATGCTATGAGCTTT
1 AATGATTTT-TGCCTACATGATTATGCTATGAGCTTT
67182664 A
1 A
67182665 GGCATGTTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 9 0.24
37 28 0.76
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (36 bp):
AATGATTTTTGCCTACATGATTATGCTATGAGCTTT
Found at i:67194715 original size:27 final size:26
Alignment explanation
Indices: 67194682--67194762 Score: 92
Period size: 27 Copynumber: 3.1 Consensus size: 26
67194672 TGTAATAATG
67194682 ATATATACACAATATGGTATTAAGAAT
1 ATATATACACAATATGGTATTAA-AAT
* *
67194709 ATATATATACAATATAGTATTTAAAA-
1 ATATATACACAATATGGTA-TTAAAAT
* * *
67194735 ATATATACATAAGATGGTATAAAAAT
1 ATATATACACAATATGGTATTAAAAT
67194761 AT
1 AT
67194763 GTACATGGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 5 0.11
26 17 0.38
27 19 0.42
28 4 0.09
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.35
Consensus pattern (26 bp):
ATATATACACAATATGGTATTAAAAT
Found at i:67194757 original size:24 final size:23
Alignment explanation
Indices: 67194730--67194790 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
67194720 ATATAGTATT
67194730 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
*
67194754 TAAAAATATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
67194778 TAAGAAATATATA
1 TAA-AAATATATA
67194791 TAATTAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 20 0.62
25 10 0.31
26 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.30
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:67194942 original size:21 final size:22
Alignment explanation
Indices: 67194917--67195019 Score: 106
Period size: 21 Copynumber: 4.8 Consensus size: 22
67194907 ACACATATAT
*
67194917 ATATA-AATAATAGTATTAGAA
1 ATATACAATAATAATATTAGAA
67194938 ATATACAAT-ATAATATTAGAA
1 ATATACAATAATAATATTAGAA
* * *
67194959 ATATACATATAATAGTATAAAAA
1 ATATACA-ATAATAATATTAGAA
*
67194982 ATATATAACTAATAATATT-GAA
1 ATATACAA-TAATAATATTAGAA
*
67195004 ATATA-TATAATAATAT
1 ATATACAATAATAATAT
67195020 ATAAAAAATA
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
20 9 0.13
21 24 0.35
22 13 0.19
23 23 0.33
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (22 bp):
ATATACAATAATAATATTAGAA
Found at i:67194942 original size:23 final size:23
Alignment explanation
Indices: 67194915--67195031 Score: 107
Period size: 23 Copynumber: 5.2 Consensus size: 23
67194905 ACACACATAT
*
67194915 ATATATAAATAATAGTATTAGAA
1 ATATATAAATAATAATATTAGAA
*
67194938 ATATA-CAAT-ATAATATTAGAA
1 ATATATAAATAATAATATTAGAA
* * * * *
67194959 ATATACATATAATAGTATAAAAA
1 ATATATAAATAATAATATTAGAA
*
67194982 ATATATAACTAATAATATT-GAA
1 ATATATAAATAATAATATTAGAA
* *
67195004 ATATATATAATAAT-ATATAAAAA
1 ATATATA-AATAATAATATTAGAA
67195027 ATATA
1 ATATA
67195032 ATATTGAAAA
Statistics
Matches: 74, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
21 16 0.22
22 18 0.24
23 40 0.54
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (23 bp):
ATATATAAATAATAATATTAGAA
Found at i:67195013 original size:43 final size:42
Alignment explanation
Indices: 67194917--67195035 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 42
67194907 ACACATATAT
* * * *
67194917 ATATAAATAATAGTATTAGAAATATACAATATAATATTAGAA
1 ATATATATAATAGTATAAAAAATATATAATATAATATTAGAA
67194959 ATATACATATAATAGTATAAAAAATATATAACTAATAATATT-GAA
1 ATAT--ATATAATAGTATAAAAAATATATAA-T-ATAATATTAGAA
*
67195004 ATATATATAATAATATATAAAAA-ATATAATAT
1 ATATATATAATAGTATA-AAAAATATATAATAT
67195036 TGAAAACATA
Statistics
Matches: 67, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
41 2 0.03
42 5 0.07
43 18 0.27
44 26 0.39
45 8 0.12
46 8 0.12
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (42 bp):
ATATATATAATAGTATAAAAAATATATAATATAATATTAGAA
Found at i:67195256 original size:21 final size:20
Alignment explanation
Indices: 67195236--67195275 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 20
67195226 ATGTAAATAT
67195236 ATATACATACA-T-ATA-TA
1 ATATACATACACTAATATTA
67195253 ATATACATACACTAATATTA
1 ATATACATACACTAATATTA
67195273 ATA
1 ATA
67195276 ATAATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.55
18 1 0.05
19 3 0.15
20 5 0.25
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (20 bp):
ATATACATACACTAATATTA
Found at i:67195258 original size:17 final size:16
Alignment explanation
Indices: 67195232--67195263 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
67195222 CTATATGTAA
67195232 ATATATATACATACAT
1 ATATATATACATACAT
67195248 ATATAATATACATACA
1 ATAT-ATATACATACA
67195264 CTAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:67195279 original size:3 final size:3
Alignment explanation
Indices: 67195265--67195428 Score: 74
Period size: 3 Copynumber: 54.7 Consensus size: 3
67195255 ATACATACAC
* *
67195265 TAA TAT TAA TAA TAA TAA TAA -AA TTAGA -AA TAA TAA TAA TTAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA
* * * ** * *
67195311 TAA TAA TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG
1 TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * *
67195356 TAA TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA TAGA -AA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA
* *
67195401 TAA -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
67195429 TGTAAAAAAA
Statistics
Matches: 119, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 13 0.11
3 94 0.79
4 11 0.09
5 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:67195307 original size:16 final size:16
Alignment explanation
Indices: 67195278--67195337 Score: 68
Period size: 16 Copynumber: 3.6 Consensus size: 16
67195268 TATTAATAAT
67195278 AATAATAA-AATTAGA
1 AATAATAATAATTAGA
*
67195293 AATAATAATAATTAGT
1 AATAATAATAATTAGA
*
67195309 AATAATAATACGTTAGAA
1 AATAATAATA-ATTAG-A
67195327 AATAATTAATA
1 AATAA-TAATA
67195338 TGTTAATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
15 8 0.21
16 16 0.42
17 4 0.11
18 5 0.13
19 5 0.13
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (16 bp):
AATAATAATAATTAGA
Found at i:67201491 original size:2 final size:2
Alignment explanation
Indices: 67201486--67201514 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
67201476 TATAAAAATA
67201486 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67201515 AGAATCAGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67211818 original size:694 final size:693
Alignment explanation
Indices: 67210473--67211850 Score: 2495
Period size: 694 Copynumber: 2.0 Consensus size: 693
67210463 TCAAACCTAA
* *
67210473 TAAGGGAATCCATAGATCGAGTTAATGGAACACTAGGGGTTTTAATTAGAAAGAGATTTCAATTA
1 TAAGGGAATCCATAGATCGAGTTAATGCAACACTAAGGGTTTTAATTAGAAAGAGATTTCAATTA
*
67210538 ATCAACCTAGTGTTAGACATTGTTAGTCTCGAGAGAGATAATAATATAAATTAAGGATTTCTACG
66 ATCAACCTAGGGTTAGACATTGTTAGTCTCGAGAGAGATAATAATATAAATTAAGGATTTCTACG
* *
67210603 GATCGAGTCAAGTGAATAAACTGTCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGACTT
131 GATCAAGTCAAGTGAATAAACTATCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGACTT
** *
67210668 TACCTTGGGGTATTGTCTGAATAAACCAGTTTTCCTAAAATTATTTCCCCAATTTACTTCCTGTG
196 TACCTTGGGGTATTGTCCAAATAAACCAGTTTTCCCAAAATTATTTCCCCAATTTACTTCCTGTG
67210733 CATTCTTAGTTTAGTTAATTAGTTTAGATAAAGCAAATCCCCTTATTTTTAGGCTAAATAATAAA
261 CATTCTTAGTTTAGTTAATTAGTTTAGATAAAGCAAATCCCCTTATTTTTAGGCTAAATAATAAA
* * * *
67210798 AAGAAGGTGAATACTAGTACTTTTAGTTCCTGTGGGTTTGACATTCCGGTCTTGCTATAAGCTAT
326 AAGAAGGTGAATACTAGTACTTTTAGTTCCTATGGGTTCGACATTCCAGTCTTGCTATAAGCTAG
*
67210863 ACTACTGTTCGATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCATGTACGATCAATC
391 ACTACTGATCGATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCATGTACGATCAATC
67210928 ATAAATATAAAACTTATCATGCACATTACCATTTGTATCGAAGTTTAGTTGGAATGCTTCAGTAT
456 ATAAATATAAAACTTATCATGCACATTACCATTTGTATCGAAGTTTAGTTGGAATGCTTCAGTAT
67210993 ATGTGCATTACACGTCCTGATTTATCGTTTTGTGTTAACAAACTCAGTCAGTACATGAACTCACC
521 ATGTGCATTACACGTCCTGATTTATCGTTTTGTGTTAACAAACTCAGTCAGTACATGAACTCACC
* *
67211058 CAGTGACACTCATTGGAAGGCTGTTAAACGAGTGTTATGGTATCTAATTAGGCCTCATCTGTGAC
586 CAGTGACACTCATTGGAAGGCTGTTAAACGAGTGTTACGGTATCTAATTAGGCCTCATCCGTGAC
*
67211123 ACTTATCAAAAGGTCAGTTTAATTTAGTTTGTTATTCTGATGC
651 ACTTATCAAAAGGTCAGTTTAAGTTAGTTTGTTATTCTGATGC
67211166 TAAGGGAATCCATAGATCGAGTTAATGCAACACTAAGGGTTTTAATTAGAAAGAGATTTCAATTA
1 TAAGGGAATCCATAGATCGAGTTAATGCAACACTAAGGGTTTTAATTAGAAAGAGATTTCAATTA
* *
67211231 ATCAACCTAGGGTTAGACATTGTTAGTCTCGAGAGAGATAATAATATAAATTAGGGATTTCTATG
66 ATCAACCTAGGGTTAGACATTGTTAGTCTCGAGAGAGATAATAATATAAATTAAGGATTTCTACG
67211296 GATCAAGTCAAGTGAATAAACTATCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGACTT
131 GATCAAGTCAAGTGAATAAACTATCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGACTT
* * *
67211361 TCCCTTGGGGTATTGTCCAAATCAATCAGTTTTCCCAAAATTTATTTCCCCAATTTACTTCCTGT
196 TACCTTGGGGTATTGTCCAAATAAACCAGTTTTCCCAAAA-TTATTTCCCCAATTTACTTCCTGT
* * *
67211426 GCATTCTTAGTTTAGTTAATTAGTTTAGATAAAGTAAATCCCCTTATTTTTAGGCTAGATAGTAA
260 GCATTCTTAGTTTAGTTAATTAGTTTAGATAAAGCAAATCCCCTTATTTTTAGGCTAAATAATAA
67211491 AAAGAAGGTGAATACTAGTACTTTTAGTTCCTATGGGTTCGACATTCCAGTCTTGCTATAAGCTA
325 AAAGAAGGTGAATACTAGTACTTTTAGTTCCTATGGGTTCGACATTCCAGTCTTGCTATAAGCTA
67211556 GACTACTGATCGATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCATGTACGATCAAT
390 GACTACTGATCGATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCATGTACGATCAAT
*
67211621 CATAAATATAAAACTTATCATGCACATTACCATTTGTATCGAATTTTAGTTGGAATGCTTCAGTA
455 CATAAATATAAAACTTATCATGCACATTACCATTTGTATCGAAGTTTAGTTGGAATGCTTCAGTA
67211686 TATGTGCATTACACGTCCTGATTTATCGTTTTGTGTTAACAAACTCAGTCAGTACATGAACTCAC
520 TATGTGCATTACACGTCCTGATTTATCGTTTTGTGTTAACAAACTCAGTCAGTACATGAACTCAC
* * *
67211751 CCAGTGACACTCATTGGAAGGCTGTTAAATGAGTGTTACGGTATCTAATTGGGCCTCGTCCGTGA
585 CCAGTGACACTCATTGGAAGGCTGTTAAACGAGTGTTACGGTATCTAATTAGGCCTCATCCGTGA
67211816 CACTTATCAAAAGGTCAGTTTAAGTTAGTTTGTTA
650 CACTTATCAAAAGGTCAGTTTAAGTTAGTTTGTTA
67211851 GCCGATCAAC
Statistics
Matches: 656, Mismatches: 28, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
693 222 0.34
694 434 0.66
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (693 bp):
TAAGGGAATCCATAGATCGAGTTAATGCAACACTAAGGGTTTTAATTAGAAAGAGATTTCAATTA
ATCAACCTAGGGTTAGACATTGTTAGTCTCGAGAGAGATAATAATATAAATTAAGGATTTCTACG
GATCAAGTCAAGTGAATAAACTATCTAATTCAGAGTCAAATAACAAGTGAAGTCTAGGTGGACTT
TACCTTGGGGTATTGTCCAAATAAACCAGTTTTCCCAAAATTATTTCCCCAATTTACTTCCTGTG
CATTCTTAGTTTAGTTAATTAGTTTAGATAAAGCAAATCCCCTTATTTTTAGGCTAAATAATAAA
AAGAAGGTGAATACTAGTACTTTTAGTTCCTATGGGTTCGACATTCCAGTCTTGCTATAAGCTAG
ACTACTGATCGATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCATGTACGATCAATC
ATAAATATAAAACTTATCATGCACATTACCATTTGTATCGAAGTTTAGTTGGAATGCTTCAGTAT
ATGTGCATTACACGTCCTGATTTATCGTTTTGTGTTAACAAACTCAGTCAGTACATGAACTCACC
CAGTGACACTCATTGGAAGGCTGTTAAACGAGTGTTACGGTATCTAATTAGGCCTCATCCGTGAC
ACTTATCAAAAGGTCAGTTTAAGTTAGTTTGTTATTCTGATGC
Found at i:67222283 original size:9 final size:9
Alignment explanation
Indices: 67222269--67222300 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
67222259 TTTGTCATTC
67222269 GAATTATTT
1 GAATTATTT
67222278 GAATTATTT
1 GAATTATTT
*
67222287 GAGTTATTT
1 GAATTATTT
67222296 GAATT
1 GAATT
67222301 GTAAAATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (9 bp):
GAATTATTT
Found at i:67224789 original size:7 final size:7
Alignment explanation
Indices: 67224774--67224825 Score: 63
Period size: 7 Copynumber: 7.4 Consensus size: 7
67224764 AGGATTGATG
67224774 ATTGAAA
1 ATTGAAA
67224781 ATTTG-AA
1 A-TTGAAA
67224788 ATTGAAA
1 ATTGAAA
67224795 ATTGAAA
1 ATTGAAA
67224802 ATT-AAA
1 ATTGAAA
*
67224808 ATTTGAAG
1 A-TTGAAA
67224816 ATTGAAA
1 ATTGAAA
67224823 ATT
1 ATT
67224826 TAGGAAGGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
6 7 0.18
7 26 0.67
8 6 0.15
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (7 bp):
ATTGAAA
Found at i:67224791 original size:14 final size:14
Alignment explanation
Indices: 67224774--67224826 Score: 74
Period size: 14 Copynumber: 3.8 Consensus size: 14
67224764 AGGATTGATG
67224774 ATTGAAAATTTGAA
1 ATTGAAAATTTGAA
67224788 ATTGAAAA-TTGAAA
1 ATTGAAAATTTG-AA
67224802 ATT-AAAATTTGAA
1 ATTGAAAATTTGAA
67224815 GATTGAAAATTT
1 -ATTGAAAATTT
67224827 AGGAAGGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
13 9 0.26
14 19 0.54
15 7 0.20
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (14 bp):
ATTGAAAATTTGAA
Found at i:67224791 original size:21 final size:21
Alignment explanation
Indices: 67224767--67224827 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
67224757 AAAATTGAGG
* *
67224767 ATTGATGATTGAAAATTTGAA
1 ATTGAAGATTGAAAATTTAAA
*
67224788 ATTGAAAATTGAAAA-TTAAA
1 ATTGAAGATTGAAAATTTAAA
67224808 ATTTGAAGATTGAAAATTTA
1 A-TTGAAGATTGAAAATTTA
67224828 GGAAGGAAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 5 0.15
21 26 0.76
22 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (21 bp):
ATTGAAGATTGAAAATTTAAA
Found at i:67225665 original size:15 final size:16
Alignment explanation
Indices: 67225645--67225674 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67225635 GAGTTATTTT
67225645 AAAATTC-CATTTCTC
1 AAAATTCTCATTTCTC
67225660 AAAATTCTCATTTCT
1 AAAATTCTCATTTCT
67225675 TTTAAACAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
AAAATTCTCATTTCTC
Found at i:67225982 original size:43 final size:42
Alignment explanation
Indices: 67225910--67226329 Score: 199
Period size: 43 Copynumber: 9.8 Consensus size: 42
67225900 TATGTGAAAA
* *
67225910 AAACGCCACTAAAAGT-CAT-CACTTGTAGCGGCGTTTGAACGGA-
1 AAACGCCGCTAAAAGTACATAC-CTT-TAGCGGCGTTT-AAC-AAC
* * * *
67225953 AAACGCTGCTAAAAGTAGATACCTTTAGCGGCGCTTT-ACCAT
1 AAACGCCGCTAAAAGTACATACCTTTAGCGGCG-TTTAACAAC
* * * * *
67225995 AAACGCCGCTAATAGTATAGACCTTTAGCGGCGCTTAGCAAAC
1 AAACGCCGCTAAAAGTACATACCTTTAGCGGCGTTTAAC-AAC
* * *
67226038 AAACGCCGCTAAAAGCACATACCTTTAGCGGCGTTTTACCCAC
1 AAACGCCGCTAAAAGTACATACCTTTAGCGGCG-TTTAACAAC
* * ** * * *
67226081 AAACGCCACTAAAGGTGTAGACCTTTAGCGGCGTTT-CCGGAAA
1 AAACGCCGCTAAAAGTACATACCTTTAGCGGCGTTTAAC--AAC
* * * *****
67226124 AAACGCCGCTAAAGGTGCAGACCTTTAGCGGCGTTTGTTTGC
1 AAACGCCGCTAAAAGTACATACCTTTAGCGGCGTTTAACAAC
* * **
67226166 AAAGCGCCGCTAAAAGTACAAACCTTTAGCGGAGCTTTTGCCCAA-
1 AAA-CGCCGCTAAAAGTACATACCTTTAGC-G-GCGTTT-AACAAC
* ** * * *
67226211 AAAAGCCGCTAAATTTACAGACCTATAGCGGCGCTTACACCAA-
1 AAACGCCGCTAAAAGTACATACCTTTAGCGGCGTTTA-A-CAAC
* * ** *
67226254 AAACGCCGCCAAAAGTACAGACCTTTTAGCGGCGCTTTCTCCAC
1 AAACGCCGCTAAAAGTACATACC-TTTAGCGGCG-TTTAACAAC
* * *
67226298 AAATGCCGCCAAAAGTAGAGT-CCTTTAGCGGC
1 AAACGCCGCTAAAAGTACA-TACCTTTAGCGGC
67226330 ACTTTCCCCA
Statistics
Matches: 293, Mismatches: 64, Indels: 40
0.74 0.16 0.10
Matches are distributed among these distances:
41 5 0.02
42 42 0.14
43 173 0.59
44 62 0.21
45 11 0.04
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (42 bp):
AAACGCCGCTAAAAGTACATACCTTTAGCGGCGTTTAACAAC
Found at i:67226129 original size:86 final size:84
Alignment explanation
Indices: 67225952--67226290 Score: 261
Period size: 86 Copynumber: 3.9 Consensus size: 84
67225942 GTTTGAACGG
* * * * *
67225952 AAAACGCTGCTAAAAGTAGATACCTTTAGCGGCGCTTTACCATAAACGCCGCTAATAGTATAGAC
1 AAAACGCCGCTAAAAGTACATACCTTTAGCGGCGTTTTACCACAAACGCCACTAATAGTATAGAC
67226017 CTTTAGCGGCGCTTAGCAA
66 CTTTAGCGGCGCTTAGCAA
* *
67226036 ACAAACGCCGCTAAAAGCACATACCTTTAGCGGCGTTTTACCCACAAACGCCACTAA-AGGTGTA
1 A-AAACGCCGCTAAAAGTACATACCTTTAGCGGCGTTTTA-CCACAAACGCCACTAATA-GTATA
* * *
67226100 GACCTTTAGCGGCGTTTCCGGAA
63 GACCTTTAGCGGCGCTT-AGCAA
* * * ** * * * * *
67226123 AAAACGCCGCTAAAGGTGCAGACCTTTAGCGGCGTTTGTTTGCA-AAGCGCCGCTAAAAGTACAA
1 AAAACGCCGCTAAAAGTACATACCTTTAGCGGCG-TT-TTACCACAAACGCCACTAATAGTATAG
* *
67226187 ACCTTTAGCGGAGCTTTTGCCCAA
64 ACCTTTAGCGGCGC-TTAG--CAA
** * * ** * * * * *
67226211 AAAA-GCCGCTAAATTTACAGACCTATAGCGGCGCTTACACCAAAAACGCCGCCAAAAGTACAGA
1 AAAACGCCGCTAAAAGTACATACCTTTAGCGGCG-TTTTACCACAAACGCCACTAATAGTATAGA
67226275 CCTTTTAGCGGCGCTT
65 CC-TTTAGCGGCGCTT
67226291 TCTCCACAAA
Statistics
Matches: 205, Mismatches: 38, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
84 1 0.00
85 35 0.17
86 91 0.44
87 60 0.29
88 18 0.09
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.22
Consensus pattern (84 bp):
AAAACGCCGCTAAAAGTACATACCTTTAGCGGCGTTTTACCACAAACGCCACTAATAGTATAGAC
CTTTAGCGGCGCTTAGCAA
Found at i:67226306 original size:44 final size:43
Alignment explanation
Indices: 67225963--67226349 Score: 203
Period size: 43 Copynumber: 9.0 Consensus size: 43
67225953 AAACGCTGCT
* * * * * *
67225963 AAAAGTAGATACCTTTAGCGGCGCTTT-ACCATAAACGCCGCT
1 AAAAGTACAGACCTTTAGCGGCGCTTTCTCCAAAAATGCCGCC
* * ** * * *
67226005 AATAGTATAGACCTTTAGCGGCGC-TTAGCAAACAAACGCCGCT
1 AAAAGTACAGACCTTTAGCGGCGCTTTCTCCAA-AAATGCCGCC
* * * * * * *
67226048 AAAAGCACATACCTTTAGCGGCGTTTTAC-CCACAAACGCCACT
1 AAAAGTACAGACCTTTAGCGGCGCTTT-CTCCAAAAATGCCGCC
* ** * * *
67226091 AAAGGTGTAGACCTTTAGCGGCG-TTTC-CGGAAAAAACGCCGCT
1 AAAAGTACAGACCTTTAGCGGCGCTTTCTC--CAAAAATGCCGCC
* * * * * ** *
67226134 AAAGGTGCAGACCTTTAGCGGCGTTTGTTTGC-AAAGCGCCGCT
1 AAAAGTACAGACCTTTAGCGGCGCTT-TCTCCAAAAATGCCGCC
* * * *
67226177 AAAAGTACAAACCTTTAGCGGAGCTTT-TGCCCAAAAAAGCCGCT
1 AAAAGTACAGACCTTTAGCGGCGCTTTCT--CCAAAAATGCCGCC
** * * * *
67226221 AAATTTACAGACCTATAGCGGCGCTTACACCAAAAACGCCGCC
1 AAAAGTACAGACCTTTAGCGGCGCTTTCTCCAAAAATGCCGCC
*
67226264 AAAAGTACAGACCTTTTAGCGGCGCTTTCTCCACAAATGCCGCC
1 AAAAGTACAGACC-TTTAGCGGCGCTTTCTCCAAAAATGCCGCC
* * * * *
67226308 AAAAGTAGAGTCCTTTAGCGGCACTTTCCCCACAAATGCCGC
1 AAAAGTACAGACCTTTAGCGGCGCTTTCTCCAAAAATGCCGC
67226350 TAAATTTATA
Statistics
Matches: 275, Mismatches: 56, Indels: 27
0.77 0.16 0.08
Matches are distributed among these distances:
41 5 0.02
42 27 0.10
43 170 0.62
44 72 0.26
45 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (43 bp):
AAAAGTACAGACCTTTAGCGGCGCTTTCTCCAAAAATGCCGCC
Found at i:67226327 original size:87 final size:86
Alignment explanation
Indices: 67226170--67226329 Score: 187
Period size: 87 Copynumber: 1.8 Consensus size: 86
67226160 GTTTGCAAAG
* * **
67226170 CGCCGCTAAAAGTACAAACCTTTAGCGGAGCTTTTGCCCAAAAAAGCCGCTAAATTTACAGACCT
1 CGCCGCCAAAAGTACAAACCTTTAGCGGAGCTTTT-CCCAAAAAAGCCGCCAAAAGTACAGACCT
67226235 ATAGCGGCGCTTACACCAAAAA
65 ATAGCGGCGCTTACACCAAAAA
* * * * * *
67226257 CGCCGCCAAAAGTACAGACCTTTTAGCGGCGC-TTTCTCCACAAATGCCGCCAAAAGTAGAGTCC
1 CGCCGCCAAAAGTACAAACC-TTTAGCGGAGCTTTTC-CCAAAAAAGCCGCCAAAAGTACAGACC
*
67226321 TTTAGCGGC
64 TATAGCGGC
67226330 ACTTTCCCCA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
86 1 0.02
87 49 0.82
88 10 0.17
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.20
Consensus pattern (86 bp):
CGCCGCCAAAAGTACAAACCTTTAGCGGAGCTTTTCCCAAAAAAGCCGCCAAAAGTACAGACCTA
TAGCGGCGCTTACACCAAAAA
Found at i:67226341 original size:43 final size:44
Alignment explanation
Indices: 67226171--67226349 Score: 150
Period size: 44 Copynumber: 4.1 Consensus size: 44
67226161 TTTGCAAAGC
* * * * *
67226171 GCCGCTAAAAGTACAAACC-TTTAGCGG-AGCTTTTGCCCAAAAAA
1 GCCGCCAAAAGTACAGACCTTTTAGCGGCA-C-TTTCCCCACAAAT
* ** * * * * * *
67226215 GCCGCTAAATTTACAGACC-TATAGCGGCGCTTACACCAAAAAC
1 GCCGCCAAAAGTACAGACCTTTTAGCGGCACTTTCCCCACAAAT
* *
67226258 GCCGCCAAAAGTACAGACCTTTTAGCGGCGCTTTCTCCACAAAT
1 GCCGCCAAAAGTACAGACCTTTTAGCGGCACTTTCCCCACAAAT
* *
67226302 GCCGCCAAAAGTAGAGTCC-TTTAGCGGCACTTTCCCCACAAAT
1 GCCGCCAAAAGTACAGACCTTTTAGCGGCACTTTCCCCACAAAT
67226345 GCCGC
1 GCCGC
67226350 TAAATTTATA
Statistics
Matches: 112, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
43 52 0.46
44 60 0.54
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (44 bp):
GCCGCCAAAAGTACAGACCTTTTAGCGGCACTTTCCCCACAAAT
Found at i:67232299 original size:9 final size:9
Alignment explanation
Indices: 67232285--67232421 Score: 112
Period size: 9 Copynumber: 14.6 Consensus size: 9
67232275 ATGTATTAGT
67232285 TAAGTTATG
1 TAAGTTATG
67232294 TAAGTTATG
1 TAAGTTATG
*
67232303 TGAGTTATG
1 TAAGTTATG
*
67232312 TAAGTTGTTATA
1 TAA---GTTATG
*
67232324 TACGTTATG
1 TAAGTTATG
* *
67232333 TGAGTTATA
1 TAAGTTATG
*
67232342 TAAATTATG
1 TAAGTTATG
67232351 TAAGTTATG
1 TAAGTTATG
67232360 TAAGTTATG
1 TAAGTTATG
*
67232369 TAGGTTGTTATG
1 TA---AGTTATG
*
67232381 TAAATTATG
1 TAAGTTATG
*
67232390 TAAGTTACG
1 TAAGTTATG
*
67232399 TGAGTTATG
1 TAAGTTATG
* *
67232408 TAACTTATT
1 TAAGTTATG
67232417 TAAGT
1 TAAGT
67232422 AATGATCAAT
Statistics
Matches: 99, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
9 84 0.85
12 15 0.15
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:67232379 original size:48 final size:48
Alignment explanation
Indices: 67232285--67232416 Score: 149
Period size: 48 Copynumber: 2.8 Consensus size: 48
67232275 ATGTATTAGT
* *
67232285 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTGTTATATACGTTATG
1 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATTAGATACGTTATG
* * * * * *
67232333 TGAGTTATATAAATTATGTAAGTTATGTAAGTTATGTAGGT-TGTTATG
1 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTAT-TAGATACGTTATG
* * *
67232381 TAAATTATGTAAGTTACGTGAGTTATGTAACTTATT
1 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATT
67232417 TAAGTAATGA
Statistics
Matches: 68, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
47 1 0.01
48 64 0.94
49 3 0.04
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (48 bp):
TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTATTAGATACGTTATG
Found at i:67232407 original size:57 final size:57
Alignment explanation
Indices: 67232285--67232421 Score: 166
Period size: 57 Copynumber: 2.4 Consensus size: 57
67232275 ATGTATTAGT
* ** * *
67232285 TAAGTTATGTAAGTTATGTGAGTTATGTAAGTTGTTATATACGTTATGTGAGTTATA
1 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACA
* * * *
67232342 TAAATTATGTAAGTTATGTAAGTTATGTAGGTTGTTATGTAAATTATGTAAGTTACG
1 TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACA
* * *
67232399 TGAGTTATGTAACTTATTTAAGT
1 TAAGTTATGTAAGTTATGTAAGT
67232422 AATGATCAAT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 67 1.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.45
Consensus pattern (57 bp):
TAAGTTATGTAAGTTATGTAAGTTATGTAAGTTGTTATATAAATTATGTAAGTTACA
Found at i:67236320 original size:14 final size:14
Alignment explanation
Indices: 67236303--67236346 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
67236293 TTAACTTATT
*
67236303 CCCTATCCCTTAAA
1 CCCTAACCCTTAAA
*
67236317 CCCTAACCCCT-AA
1 CCCTAACCCTTAAA
67236330 CCACTAACCCTTAAA
1 CC-CTAACCCTTAAA
67236345 CC
1 CC
67236347 TTAATACCGC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 4 0.16
14 17 0.68
15 4 0.16
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.20
Consensus pattern (14 bp):
CCCTAACCCTTAAA
Found at i:67237110 original size:15 final size:15
Alignment explanation
Indices: 67237070--67237120 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
67237060 ATCACAAACA
67237070 CTAAACCCCTAACCC
1 CTAAACCCCTAACCC
67237085 CT-AACCCCTAACCC
1 CTAAACCCCTAACCC
* * * *
67237099 TTAAAACCCTAAACT
1 CTAAACCCCTAACCC
67237114 CTAAACC
1 CTAAACC
67237121 ACAAAAACAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
14 13 0.45
15 16 0.55
ACGTcount: A:0.37, C:0.45, G:0.00, T:0.18
Consensus pattern (15 bp):
CTAAACCCCTAACCC
Found at i:67237112 original size:7 final size:7
Alignment explanation
Indices: 67237065--67237180 Score: 56
Period size: 7 Copynumber: 15.6 Consensus size: 7
67237055 TATAAATCAC
*
67237065 AAACACT
1 AAACCCT
67237072 AAACCCCT
1 AAA-CCCT
*
67237080 AACCCCT
1 AAACCCT
*
67237087 AACCCCT
1 AAACCCT
67237094 -AACCCTT
1 AAACCC-T
67237101 AAAACCCT
1 -AAACCCT
*
67237109 AAACTCT
1 AAACCCT
*
67237116 AAACCACA
1 AAACC-CT
* *
67237124 AAAACAT
1 AAACCCT
*
67237131 AAACCAT
1 AAACCCT
*
67237138 GAACCCTT
1 AAACCC-T
67237146 AAA-CCT
1 AAACCCT
67237152 AAACCCAT
1 AAACCC-T
67237160 AAACCCTT
1 AAACCC-T
67237168 AATACCGCT
1 AA-ACC-CT
67237177 AAAC
1 AAAC
67237181 ATTAAGATCA
Statistics
Matches: 85, Mismatches: 14, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
6 8 0.09
7 39 0.46
8 26 0.31
9 11 0.13
10 1 0.01
ACGTcount: A:0.45, C:0.37, G:0.02, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:67237159 original size:22 final size:21
Alignment explanation
Indices: 67237125--67237169 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
67237115 TAAACCACAA
*
67237125 AAACATAAACCATGAACCCTT
1 AAACATAAACCATAAACCCTT
*
67237146 AAACCTAAACCCATAAACCCTT
1 AAACATAAA-CCATAAACCCTT
67237168 AA
1 AA
67237170 TACCGCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.49, C:0.31, G:0.02, T:0.18
Consensus pattern (21 bp):
AAACATAAACCATAAACCCTT
Found at i:67237293 original size:35 final size:35
Alignment explanation
Indices: 67237228--67237309 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 35
67237218 CAAAATAACA
** *
67237228 AAACCCTAAACCATAAAATTAACATTTTAAATCTT
1 AAACCCTAAACCATAAAATTAACACCTTAAATATT
**
67237263 AAACCCTAAACCATAGACCTTAA-ACCTTAAATATT
1 AAACCCTAAACCATA-AAATTAACACCTTAAATATT
*
67237298 AAACCGTAAACC
1 AAACCCTAAACC
67237310 CAAAAAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
35 35 0.88
36 5 0.12
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (35 bp):
AAACCCTAAACCATAAAATTAACACCTTAAATATT
Found at i:67237430 original size:41 final size:41
Alignment explanation
Indices: 67237363--67237766 Score: 549
Period size: 41 Copynumber: 9.9 Consensus size: 41
67237353 AATTCAAAAA
* * * *
67237363 AGACGTTTAGCGGCGTTTCTCCAAAAACGCCGCTAGTGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
** * * *
67237404 AGACTTTTGGCGGCGTTTTTGGAAAAACACCGCGAATACTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
67237445 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
*
67237486 AGACTTTTGGCGGCGTTTTCCCAAAAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* *
67237527 AGTA-TTTTGGCGGCGTTTTCCCAAAAACGCCGCTAATTCTC
1 AG-ACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* *
67237568 AGACTTTTCGCGGCGTTTTTCCAACAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* * *
67237609 AGACTTTTAGCGGCGCTTTTCCAACAACGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
* *
67237650 AGACTTTTGGCGGCGTTTTTCTAAAAATGCCGCTAATGCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
** * ** * *
67237691 AGACTTTTGGCGGCGTTTTTGGAAAAATGCATCGAATTCTC
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
*
67237732 AGACTTTTGGCGGCGTTTTTCCGAAAACGCCGCTA
1 AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTA
67237767 TTTCACGACT
Statistics
Matches: 321, Mismatches: 40, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
40 1 0.00
41 319 0.99
42 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (41 bp):
AGACTTTTGGCGGCGTTTTTCCAAAAACGCCGCTAATGCTC
Found at i:67243708 original size:19 final size:19
Alignment explanation
Indices: 67243671--67243708 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
67243661 GGGGGAGAAG
*
67243671 AAAAAGAAAATAAAGAAAT
1 AAAAAGAAAAAAAAGAAAT
*
67243690 AAAAAGAAAAAAAATAAAT
1 AAAAAGAAAAAAAAGAAAT
67243709 TGTTCAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.11
Consensus pattern (19 bp):
AAAAAGAAAAAAAAGAAAT
Found at i:67246659 original size:60 final size:60
Alignment explanation
Indices: 67246567--67246685 Score: 238
Period size: 60 Copynumber: 2.0 Consensus size: 60
67246557 ATAAAGAACA
67246567 AAAAAAAATATGAAAGCAATAGAAAATGTACTTTATTGATCGAAATGGATGATTACAATC
1 AAAAAAAATATGAAAGCAATAGAAAATGTACTTTATTGATCGAAATGGATGATTACAATC
67246627 AAAAAAAATATGAAAGCAATAGAAAATGTACTTTATTGATCGAAATGGATGATTACAAT
1 AAAAAAAATATGAAAGCAATAGAAAATGTACTTTATTGATCGAAATGGATGATTACAAT
67246686 GCATCAAAGT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.50, C:0.08, G:0.15, T:0.27
Consensus pattern (60 bp):
AAAAAAAATATGAAAGCAATAGAAAATGTACTTTATTGATCGAAATGGATGATTACAATC
Found at i:67247552 original size:42 final size:42
Alignment explanation
Indices: 67247490--67247573 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
67247480 ATGAACTACC
67247490 AATTTGATAATATATCTAAATGTTATTGCATCCACCACAAAA
1 AATTTGATAATATATCTAAATGTTATTGCATCCACCACAAAA
*
67247532 AATTTGATAATATATTTAAATGTTATTGCATCCACCACAAAA
1 AATTTGATAATATATCTAAATGTTATTGCATCCACCACAAAA
67247574 GAATATTATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.35
Consensus pattern (42 bp):
AATTTGATAATATATCTAAATGTTATTGCATCCACCACAAAA
Found at i:67251277 original size:130 final size:130
Alignment explanation
Indices: 67251107--67251563 Score: 456
Period size: 131 Copynumber: 3.5 Consensus size: 130
67251097 AAAAAATCGA
* * * ** * *
67251107 AACCCAGCAC-AGTAGGGCACGGTTCCTCGAATTTCGAAACATCGAGCGTTGCCTT-ATTTTTAA
1 AACCCAGCACGA-TAGGGCACGATTCC-CGAATTGCCAAACATCGAGTATTGCCTTCGTTTTCAA
* *
67251170 -AATTTTAAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACACAC-AGGAAA
64 GAGTTTT-AAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGA-GAAA
67251233 TTGC
127 TTGC
* * *
67251237 AACTCAGCACGATAGGGCACGATTCCCTGAATTGCCAAACATCGAGTATTACCTTCGTTTTGAAG
1 AACCCAGCACGATAGGGCACGATTCCC-GAATTGCCAAACATCGAGTATTGCCTTCGTTTTCAAG
* * * * * * * *
67251302 AGTTTTTAAAGATATGAGTGAAATTCCAAAGGAATCTTCGATTGTTTCGAACAAACGAGAAATCG
65 AGTTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTG
67251367 C
130 C
* * * * *
67251368 AACCCAGCACAATAGGGTACGATTCTCGAATTGCCAAACACCAAGTATTGCCTTCGTTTTCAAGA
1 AACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTCAAGA
* * * * * * * **
67251433 GTTTTTAGAAAACGTGAATGAAATTCTAAAGGGACATTTGGTTATTTTGAGGAAACGAGAAATTG
66 G-TTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTG
67251498 C
130 C
* * * ** *
67251499 AACCCAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATATCGAACATCGCCTTCGTTTT-AAG
1 AACCCAGCACGATAGGGCACGATTCC-CGAATTGCCAAACATCGAGTATTGCCTTCGTTTTCAAG
67251563 A
65 A
67251564 AATTTTTAAA
Statistics
Matches: 265, Mismatches: 55, Indels: 13
0.80 0.17 0.04
Matches are distributed among these distances:
129 1 0.00
130 79 0.30
131 152 0.57
132 33 0.12
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (130 bp):
AACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTCAAGA
GTTTTAAAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGC
Found at i:67257198 original size:27 final size:29
Alignment explanation
Indices: 67257168--67257224 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
67257158 TGTAATGGCT
67257168 TCAAAAAAGAT-T-ATTATCAGCAAACCA
1 TCAAAAAAGATATCATTATCAGCAAACCA
*
67257195 TCAAAGAAGATCATCATTATCAGCAAACCA
1 TCAAAAAAGAT-ATCATTATCAGCAAACCA
67257225 ATTCTCAAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 10 0.38
29 1 0.04
30 15 0.58
ACGTcount: A:0.49, C:0.21, G:0.09, T:0.21
Consensus pattern (29 bp):
TCAAAAAAGATATCATTATCAGCAAACCA
Found at i:67258802 original size:16 final size:16
Alignment explanation
Indices: 67258781--67258815 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
67258771 TTTAAGTTTA
67258781 TTTTAATT-TTAATTAT
1 TTTTAATTATT-ATTAT
67258797 TTTTAATTATTATTAT
1 TTTTAATTATTATTAT
67258813 TTT
1 TTT
67258816 AGATTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTAATTATTATTAT
Found at i:67265469 original size:10 final size:10
Alignment explanation
Indices: 67265454--67265486 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
67265444 GGCAACCCAA
67265454 ATTTATTTTT
1 ATTTATTTTT
*
67265464 ATTTATTTTC
1 ATTTATTTTT
67265474 ATTTA-TTTT
1 ATTTATTTTT
67265483 ATTT
1 ATTT
67265487 TTAGTTTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 7 0.33
10 14 0.67
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:67265786 original size:15 final size:15
Alignment explanation
Indices: 67265768--67265796 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
67265758 CCAACTACCC
67265768 ATCCATCAACCCAAT
1 ATCCATCAACCCAAT
67265783 ATCCATCAACCCAA
1 ATCCATCAACCCAA
67265797 ACCCAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.17
Consensus pattern (15 bp):
ATCCATCAACCCAAT
Found at i:67268992 original size:16 final size:15
Alignment explanation
Indices: 67268967--67269014 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
67268957 CTATTTTAAG
67268967 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
67268982 TTTATTTTTAATTATTA
1 TTTA-TTTTAATT-TTA
67268999 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
67269014 T
1 T
67269015 ATTTCTTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 14 0.48
17 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:67272615 original size:17 final size:17
Alignment explanation
Indices: 67272595--67272628 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67272585 AGGTTTGGGT
67272595 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
67272612 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
67272629 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:67275414 original size:13 final size:13
Alignment explanation
Indices: 67275396--67275420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67275386 TTGGCAATGT
67275396 TTTTGAAAAGTGA
1 TTTTGAAAAGTGA
67275409 TTTTGAAAAGTG
1 TTTTGAAAAGTG
67275421 CTGTGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (13 bp):
TTTTGAAAAGTGA
Found at i:67279905 original size:132 final size:131
Alignment explanation
Indices: 67279585--67279978 Score: 447
Period size: 131 Copynumber: 3.0 Consensus size: 131
67279575 TTGCCTCCCC
* * * * ** * * *
67279585 TTAGAAAACACGAGTGAAATTCCAAAGGAATATTTGATTATTTTGAATAAACGGGAAATCGAAAC
1 TTAGAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAGCAAACGAGAAATTGCAAC
* * * * * * * *
67279650 CCAGCACGATAGGGCACTATTCCT-CGAATTTCCAAACATCGAATATTGCCTTCGCTTTAAAGAG
66 CCAGCACGTTA-GGCACGATT-CTGCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAA
67279714 TTT
129 TTT
* *
67279717 TTA-AAGACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAGCAACCGAGAAATTGCAAC
1 TTAGAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAGCAAACGAGAAATTGCAAC
* * *
67279781 CCAGCACGTTAGGACACGATTCTGCGAATGGCCAAATATCAAACATCGCCTTTGTTTTAAAGAAT
66 CCAGCACGTTAGG-CACGATTCTGCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAAT
67279846 TT
130 TT
* * * *
67279848 TTAGAAAACATGAATGAAATTCTAAAGGGACACTCGATTATTTTGAGCAAATGAGAAATTGCAAC
1 TTAGAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAGCAAACGAGAAATTGCAAC
* * * * *
67279913 CCAGCACGTTAGGCATGATTCGGCGAATTG-CTAAT-T-GGACATCGCCTTCGTTTTAGAGAATT
66 CCAGCACGTTAGGCACGATTCTGCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAATT
67279975 T
131 T
67279976 TTA
1 TTA
67279979 AATGAATAAT
Statistics
Matches: 223, Mismatches: 36, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
128 26 0.12
129 1 0.00
130 8 0.04
131 117 0.52
132 71 0.32
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (131 bp):
TTAGAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAGCAAACGAGAAATTGCAAC
CCAGCACGTTAGGCACGATTCTGCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAATT
T
Found at i:67295823 original size:25 final size:24
Alignment explanation
Indices: 67295763--67295824 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
67295753 GTACATGTAT
* *
67295763 GCTCATACGAGCTATAAATGGTAA
1 GCTCATACGAGCTAAAAATGGAAA
*
67295787 GCTC-TTCTGAGCTAAAAAATGGAAA
1 GCTCATAC-GAGCT-AAAAATGGAAA
67295812 GCTCATACGAGCT
1 GCTCATACGAGCT
67295825 GAGTATCGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
23 2 0.06
24 9 0.29
25 18 0.58
26 2 0.06
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (24 bp):
GCTCATACGAGCTAAAAATGGAAA
Found at i:67295838 original size:25 final size:24
Alignment explanation
Indices: 67295810--67295860 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
67295800 AAAAAATGGA
* *
67295810 AAGCTCATACGAGCTGAGTATCGGT
1 AAGCTCATAAGAGCTG-GAATCGGT
*
67295835 AAGCTCATAAGAGTTGGAATCGGT
1 AAGCTCATAAGAGCTGGAATCGGT
67295859 AA
1 AA
67295861 CCCTAATGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (24 bp):
AAGCTCATAAGAGCTGGAATCGGT
Found at i:67299884 original size:49 final size:49
Alignment explanation
Indices: 67299716--67300001 Score: 315
Period size: 49 Copynumber: 5.8 Consensus size: 49
67299706 AGGTCACGTC
* * *
67299716 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGA-AATTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCGCATG
* * * * * *
67299764 TGTAGTACTAAGTGTAGGCTACTATGCGTACCCGAAAACTGTGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-TGATCGCATG
* * *
67299815 TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCGCATG
* * * * *
67299864 TGTAGTACTAAGTGCTGGCTACTATGCGTACTC-GAAAACTATGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTAC-CAGATAA-T-TGATCGCATG
* * **
67299915 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTTTTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCGCATG
*
67299964 TGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA
67300002 CTTCGGCTAC
Statistics
Matches: 197, Mismatches: 34, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
48 31 0.16
49 82 0.42
50 6 0.03
51 78 0.40
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGATCGCATG
Found at i:67299893 original size:100 final size:100
Alignment explanation
Indices: 67299709--67299995 Score: 479
Period size: 100 Copynumber: 2.9 Consensus size: 100
67299699 TATTTTGAGG
*
67299709 TCACGTCTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGA-AATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
67299773 AAGTG-TAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCT-GGCTACTATGCGTACCCGAAAACTATGA
67299808 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
67299873 AAGTGCTGGCTACTATGCGTACTCGAAAACTATGA
66 AAGTGCTGGCTACTATGCGTACCCGAAAACTATGA
* * **
67299908 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTTTTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
*
67299973 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCTGGCTACTATGCGTACC
67299996 AGATAACTTC
Statistics
Matches: 177, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
99 41 0.23
100 135 0.76
101 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCTGGCTACTATGCGTACCCGAAAACTATGA
Found at i:67307550 original size:42 final size:42
Alignment explanation
Indices: 67307491--67307576 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
67307481 CAGCCAATTT
67307491 TTTCAACTCTCTTTGAGAGGTTTAAGGAGAGTTTGTTGTTTG
1 TTTCAACTCTCTTTGAGAGGTTTAAGGAGAGTTTGTTGTTTG
*
67307533 TTTCAATTCTCTTTGAGAGGTTTAAGGAGAGTTTGTTGTTTG
1 TTTCAACTCTCTTTGAGAGGTTTAAGGAGAGTTTGTTGTTTG
67307575 TT
1 TT
67307577 CTTTGATTGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.19, C:0.08, G:0.26, T:0.48
Consensus pattern (42 bp):
TTTCAACTCTCTTTGAGAGGTTTAAGGAGAGTTTGTTGTTTG
Found at i:67312370 original size:12 final size:12
Alignment explanation
Indices: 67312353--67312382 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
67312343 AGGTGAGCCT
67312353 GAGTGGGATTCA
1 GAGTGGGATTCA
67312365 GAGTGGGATTCA
1 GAGTGGGATTCA
67312377 GAGTGG
1 GAGTGG
67312383 CCACGAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (12 bp):
GAGTGGGATTCA
Found at i:67314206 original size:18 final size:18
Alignment explanation
Indices: 67314141--67314255 Score: 99
Period size: 18 Copynumber: 6.3 Consensus size: 18
67314131 AACAATTAAT
*
67314141 CAATCAGTAATATTCATTAA
1 CAATCAGT--TATTCAGTAA
* *
67314161 CAATCAGTCAATCAG-AA
1 CAATCAGTTATTCAGTAA
* *
67314178 CAATTATTTATTCAGTAA
1 CAATCAGTTATTCAGTAA
*
67314196 CAGTCAGTTATTC-GATAA
1 CAATCAGTTATTCAG-TAA
* *
67314214 CAATCAATTATTCAATAA
1 CAATCAGTTATTCAGTAA
* *
67314232 TAATCAGTTATTCAGTAT
1 CAATCAGTTATTCAGTAA
67314250 CAATCA
1 CAATCA
67314256 ATTGATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
17 14 0.19
18 52 0.70
20 8 0.11
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.34
Consensus pattern (18 bp):
CAATCAGTTATTCAGTAA
Found at i:67314225 original size:36 final size:36
Alignment explanation
Indices: 67314151--67314258 Score: 112
Period size: 36 Copynumber: 3.0 Consensus size: 36
67314141 CAATCAGTAA
* * * * *
67314151 TATTCATTAACAATCAGTCAATCAG-AACAATTATT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
* *
67314186 TATTCAGTAACAGTCAGTTATTC-GATAACAATCAAT
1 TATTCAATAACAATCAGTTATTCAG-TAACAATCAAT
* *
67314222 TATTCAATAATAATCAGTTATTCAGTATCAATCAAT
1 TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
67314258 T
1 T
67314259 GATTGGTTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
34 1 0.02
35 19 0.32
36 39 0.65
37 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (36 bp):
TATTCAATAACAATCAGTTATTCAGTAACAATCAAT
Found at i:67314525 original size:53 final size:53
Alignment explanation
Indices: 67314454--67314575 Score: 183
Period size: 53 Copynumber: 2.3 Consensus size: 53
67314444 CCAGAACAGT
* * *
67314454 AACAGTGACAGTAGCAGTATGGTACACAGAGTACCTCATCAGAACAAATCC-A
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
* *
67314506 GAACGGTAACAGTAACAGTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
1 -AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
67314560 AACAGTAACAGTAACA
1 AACAGTAACAGTAACA
67314576 ATAGTCGGCA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
53 61 0.98
54 1 0.02
ACGTcount: A:0.42, C:0.23, G:0.20, T:0.16
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGAACAAATCCGA
Found at i:67318676 original size:20 final size:21
Alignment explanation
Indices: 67318648--67318687 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
67318638 AGAATCAAAA
*
67318648 TAAAGAAAAAACCTT-AAACC
1 TAAAAAAAAAACCTTCAAACC
67318668 TAAAAAAAAAACCTTCAAAC
1 TAAAAAAAAAACCTTCAAAC
67318688 TGAAACACGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.62, C:0.20, G:0.03, T:0.15
Consensus pattern (21 bp):
TAAAAAAAAAACCTTCAAACC
Found at i:67324182 original size:34 final size:34
Alignment explanation
Indices: 67324135--67324202 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
67324125 CCTTTGGAAC
*
67324135 TCACTAAGTTCTTTGAACTTACTTAGTTATCTTT
1 TCACTAAGCTCTTTGAACTTACTTAGTTATCTTT
67324169 TCACTAAGCTCTTTGAACTTACTTAGTTATCTTT
1 TCACTAAGCTCTTTGAACTTACTTAGTTATCTTT
67324203 CCTTCTCAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.24, C:0.19, G:0.09, T:0.49
Consensus pattern (34 bp):
TCACTAAGCTCTTTGAACTTACTTAGTTATCTTT
Found at i:67324953 original size:45 final size:45
Alignment explanation
Indices: 67324902--67324989 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
67324892 ACTGAATTAA
*
67324902 ACAAACAATCCTACCGTAATACCTACATTAAATGCACATAATTCT
1 ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATTCT
67324947 ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATT
1 ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATT
67324990 ACTTTTACCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.44, C:0.26, G:0.03, T:0.26
Consensus pattern (45 bp):
ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATTCT
Found at i:67325874 original size:23 final size:23
Alignment explanation
Indices: 67325825--67325874 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
67325815 ATGGTGACCT
**
67325825 GGTGGATGTCGAACGGTGTAATT
1 GGTGGATGTCGAACGGTGTAAGA
67325848 GGTGGATGTCGAACGGT-TCAAGA
1 GGTGGATGTCGAACGGTGT-AAGA
67325871 GGTG
1 GGTG
67325875 ACTGGCATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 23 0.96
ACGTcount: A:0.22, C:0.10, G:0.42, T:0.26
Consensus pattern (23 bp):
GGTGGATGTCGAACGGTGTAAGA
Found at i:67333794 original size:21 final size:21
Alignment explanation
Indices: 67333757--67333797 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67333747 AATGCCACTA
*
67333757 TCTATTTTGGCCTGGAATGCT
1 TCTATTTTGACCTGGAATGCT
67333778 TCTATTTTGA-CTCGGAATGC
1 TCTATTTTGACCT-GGAATGC
67333798 AAGGCATACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (21 bp):
TCTATTTTGACCTGGAATGCT
Found at i:67334060 original size:41 final size:38
Alignment explanation
Indices: 67334015--67334113 Score: 98
Period size: 41 Copynumber: 2.5 Consensus size: 38
67334005 TTTTATCATA
*
67334015 TAAAAATAT-TTATAA-TATTATATAATTTATAATGTTAGTAT
1 TAAAAATATATTA-AATTATT-TAT-ATTTATAATCTTA--AT
67334056 TAAAAAATATATTAAATTATTTATATTTATAATCTTAAT
1 T-AAAAATATATTAAATTATTTATATTTATAATCTTAAT
67334095 TAAAACATATA--AAATTATT
1 TAAAA-ATATATTAAATTATT
67334114 AAAATTTAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 12
0.80 0.02 0.18
Matches are distributed among these distances:
37 8 0.15
38 4 0.08
39 8 0.15
41 13 0.25
42 13 0.25
43 7 0.13
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (38 bp):
TAAAAATATATTAAATTATTTATATTTATAATCTTAAT
Found at i:67334121 original size:37 final size:38
Alignment explanation
Indices: 67334025--67334121 Score: 99
Period size: 37 Copynumber: 2.5 Consensus size: 38
67334015 TAAAAATATT
* * *
67334025 TATAATATTA-TATAATTTATAATGTTAGTATTAAAAAA
1 TATAAAATTATTAAAATTTATAATCTTAG-ATTAAAAAA
* * *
67334063 TATATTAAATTATTTATATTTATAATCTTA-ATTAAAACA
1 TATA--AAATTATTAAAATTTATAATCTTAGATTAAAAAA
67334102 TATAAAATTATTAAAATTTA
1 TATAAAATTATTAAAATTTA
67334122 AATTAAAAAC
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
37 14 0.29
38 4 0.08
39 12 0.25
40 5 0.10
41 13 0.27
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (38 bp):
TATAAAATTATTAAAATTTATAATCTTAGATTAAAAAA
Found at i:67334147 original size:18 final size:18
Alignment explanation
Indices: 67334124--67334165 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
67334114 AAAATTTAAA
*
67334124 TTAAAAACAGATAAAAAT
1 TTAAAAACAAATAAAAAT
* *
67334142 TTAAAAATAAATTAAAAT
1 TTAAAAACAAATAAAAAT
67334160 TTAAAA
1 TTAAAA
67334166 TTAAAAAAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
TTAAAAACAAATAAAAAT
Found at i:67334332 original size:56 final size:56
Alignment explanation
Indices: 67334265--67334378 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
67334255 ATTCGATCGT
67334265 AATCCATAGATATACAACTCTATATTTTATATGAATTTTAAATAAAAATTTTTATC
1 AATCCATAGATATACAACTCTATATTTTATATGAATTTTAAATAAAAATTTTTATC
*
67334321 AATCCATAGATATACAACTCTATATTTTATATGAATTTTAAATAAAATTTTTTATC
1 AATCCATAGATATACAACTCTATATTTTATATGAATTTTAAATAAAAATTTTTATC
67334377 AA
1 AA
67334379 GCACGGGTTC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (56 bp):
AATCCATAGATATACAACTCTATATTTTATATGAATTTTAAATAAAAATTTTTATC
Found at i:67337426 original size:27 final size:26
Alignment explanation
Indices: 67337383--67337438 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 26
67337373 CTAGACATTA
67337383 TATAAAAAAATAGATA-TAACAAAAACT
1 TATAAAAAAATAGATATTAA-AAAAA-T
*
67337410 TATAATAAAATTA-ATATTAAAAAAAT
1 TATAA-AAAAATAGATATTAAAAAAAT
67337436 TAT
1 TAT
67337439 TAAATTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
26 4 0.15
27 13 0.50
28 9 0.35
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (26 bp):
TATAAAAAAATAGATATTAAAAAAAT
Found at i:67342795 original size:26 final size:26
Alignment explanation
Indices: 67342766--67342873 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
67342756 TGGTACAAAT
67342766 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
67342792 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67342818 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
** *
67342844 TGATAATGCTTTAGGTAAATGTTACA
1 TGATAATGGGTTAGGTAAATGTTCCA
67342870 TGAT
1 TGAT
67342874 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67349335 original size:26 final size:26
Alignment explanation
Indices: 67349306--67349413 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
67349296 TGGTACAAAT
67349306 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
67349332 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67349358 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
**
67349384 TGATAATGCTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67349410 TGAT
1 TGAT
67349414 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67364619 original size:16 final size:16
Alignment explanation
Indices: 67364598--67364630 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
67364588 TGTTTTGAAC
*
67364598 ATAATTGTTCTAAACA
1 ATAATTATTCTAAACA
67364614 ATAATTATTCTAAACA
1 ATAATTATTCTAAACA
67364630 A
1 A
67364631 GAGTTGTTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.36
Consensus pattern (16 bp):
ATAATTATTCTAAACA
Found at i:67367406 original size:14 final size:14
Alignment explanation
Indices: 67367387--67367416 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
67367377 TGTTGTTTTA
67367387 GTTATTTGCTTAAT
1 GTTATTTGCTTAAT
67367401 GTTATTTGCTTAAT
1 GTTATTTGCTTAAT
67367415 GT
1 GT
67367417 CTTCATGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.57
Consensus pattern (14 bp):
GTTATTTGCTTAAT
Found at i:67368582 original size:12 final size:11
Alignment explanation
Indices: 67368559--67368606 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 11
67368549 ACACTACCTG
*
67368559 AAAAGAAAATA
1 AAAATAAAATA
67368570 AAAATAGAAATA
1 AAAATA-AAATA
*
67368582 AAAAAAAAAGTA
1 AAAATAAAA-TA
*
67368594 AACATAAAATA
1 AAAATAAAATA
67368605 AA
1 AA
67368607 TATCATATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 12 0.39
12 19 0.61
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.12
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:67368992 original size:17 final size:16
Alignment explanation
Indices: 67368970--67369010 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
67368960 AGTGAGATAA
67368970 AAATAAATAATGAAAAT
1 AAATAAATAA-GAAAAT
67368987 AAATAAATAAGAAAAT
1 AAATAAATAAGAAAAT
*
67369003 AAACAAAT
1 AAATAAAT
67369011 GACTTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (16 bp):
AAATAAATAAGAAAAT
Found at i:67373124 original size:120 final size:120
Alignment explanation
Indices: 67372988--67373467 Score: 791
Period size: 120 Copynumber: 4.0 Consensus size: 120
67372978 ATTATTAATC
*
67372988 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
*
67373053 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
* * *
67373108 TATATTATATATTATTATATA-TATGATTTTATTAAATTCATATAAGAATATTTAATATTAAAAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
67373172 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
* *
67373227 TATATTTTATAGTATTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
*
67373292 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAA
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
* * * * * * *
67373347 TATATTTTATAGTATCATATATTATTATTTTAGTAAATTCAGATAAAAATATTGATTATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
* *
67373412 TTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATG-TTAAAT
67373468 ATGATTAAAT
Statistics
Matches: 339, Mismatches: 19, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
119 115 0.34
120 219 0.65
121 5 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
Found at i:67373439 original size:18 final size:17
Alignment explanation
Indices: 67373411--67373445 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
67373401 ATTATTAAGA
*
67373411 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
67373428 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
67373446 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:67373636 original size:39 final size:40
Alignment explanation
Indices: 67373593--67373697 Score: 104
Period size: 44 Copynumber: 2.5 Consensus size: 40
67373583 TTCCATTATG
67373593 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
** *** *
67373632 CTATTACGTCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
67373677 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
67373698 ATACCTCTAA
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
39 14 0.27
40 5 0.10
44 17 0.33
45 16 0.31
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:67373692 original size:45 final size:44
Alignment explanation
Indices: 67373591--67373698 Score: 118
Period size: 45 Copynumber: 2.5 Consensus size: 44
67373581 TTTTCCATTA
67373591 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* ** ***
67373630 TACTATTACGTCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
67373675 TGCTATTACACCTCTATTCCATTA
1 TGCTATTACACCTCTATTCCATTA
67373699 TACCTCTAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
39 15 0.28
40 1 0.02
44 16 0.30
45 22 0.41
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:67373719 original size:16 final size:16
Alignment explanation
Indices: 67373681--67373732 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
67373671 GATTTGCTAT
*
67373681 TACACCTCT-ATTCCAT
1 TACACCTCTAATT-CAA
*
67373697 TATACCTCTAATTCAA
1 TACACCTCTAATTCAA
*
67373713 TACACCTCTAATCCAA
1 TACACCTCTAATTCAA
67373729 TACA
1 TACA
67373733 GCGAACCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 28 0.90
17 3 0.10
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.33
Consensus pattern (16 bp):
TACACCTCTAATTCAA
Found at i:67375008 original size:47 final size:47
Alignment explanation
Indices: 67374907--67375010 Score: 156
Period size: 47 Copynumber: 2.2 Consensus size: 47
67374897 GTCACAGTAA
* **
67374907 TGCAGATAAACTGCCAATAATCAAAATTGTGGACAAGCCACCAAAAT
1 TGCAGATAAACTACCAATAATCAAAATCATGGACAAGCCACCAAAAT
*
67374954 TGTAGATAAACTACCAATAATCAAAATCATGGACAAGCCACCAAAAT
1 TGCAGATAAACTACCAATAATCAAAATCATGGACAAGCCACCAAAAT
67375001 CT-CAGATAAA
1 -TGCAGATAAA
67375011 TCCCAACCCA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
47 50 0.98
48 1 0.02
ACGTcount: A:0.47, C:0.21, G:0.12, T:0.19
Consensus pattern (47 bp):
TGCAGATAAACTACCAATAATCAAAATCATGGACAAGCCACCAAAAT
Found at i:67387626 original size:55 final size:55
Alignment explanation
Indices: 67387542--67387652 Score: 134
Period size: 55 Copynumber: 2.0 Consensus size: 55
67387532 GCTGTGGACA
* * *
67387542 AGCCTACCTAAATAACACGGGCGTGCGACACGC-CAGTGTAGAAGAACCGTGGTCG
1 AGCCTACCAAAATAACACGGGCATGCGACACGCTCA-TGTAGAACAACCGTGGTCG
* * * * *
67387597 AGCCTGCCAAAATAGCACGGGCATTCGACACGCTCATGTGGAACACCCGTGGTCG
1 AGCCTACCAAAATAACACGGGCATGCGACACGCTCATGTAGAACAACCGTGGTCG
67387652 A
1 A
67387653 ACCTTAACAC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
55 45 0.96
56 2 0.04
ACGTcount: A:0.28, C:0.29, G:0.28, T:0.15
Consensus pattern (55 bp):
AGCCTACCAAAATAACACGGGCATGCGACACGCTCATGTAGAACAACCGTGGTCG
Found at i:67392697 original size:18 final size:18
Alignment explanation
Indices: 67392674--67392734 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
67392664 GAACGATTAT
67392674 TTATTCAGTAACAGATAG
1 TTATTCAGTAACAGATAG
* *
67392692 TTATTCGGTAACA-ATCG
1 TTATTCAGTAACAGATAG
* *
67392709 ATTATTCAATAATAG-TCAG
1 -TTATTCAGTAACAGAT-AG
67392728 TTATTCA
1 TTATTCA
67392735 ATAAAAATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 3 0.09
18 30 0.88
19 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (18 bp):
TTATTCAGTAACAGATAG
Found at i:67392943 original size:47 final size:47
Alignment explanation
Indices: 67392892--67392987 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
67392882 ACAGTAGAAA
*
67392892 TACGGTACACAGAGTACCTCATCGGAACAAATCCGGAACAGTAACAG
1 TACGGTACACAGAGTACCTCATCGGAACAAATCCGAAACAGTAACAG
*
67392939 TACGGTACACAGAGTACCTCATCGGAACAAATCCGAAATAGTAACAG
1 TACGGTACACAGAGTACCTCATCGGAACAAATCCGAAACAGTAACAG
67392986 TA
1 TA
67392988 ACGGCAACAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.17
Consensus pattern (47 bp):
TACGGTACACAGAGTACCTCATCGGAACAAATCCGAAACAGTAACAG
Found at i:67394795 original size:31 final size:32
Alignment explanation
Indices: 67394739--67394801 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
67394729 CACACTTGTC
*
67394739 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
67394771 ATAATATAA-ATATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
67394802 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:67402008 original size:13 final size:13
Alignment explanation
Indices: 67401988--67402019 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
67401978 AAGTTTCTTG
67401988 AATCAAGATTTTC
1 AATCAAGATTTTC
*
67402001 ACTCAAGATTTTC
1 AATCAAGATTTTC
67402014 AATCAA
1 AATCAA
67402020 CGAATTTAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.34
Consensus pattern (13 bp):
AATCAAGATTTTC
Done.