Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 205 of 253
Found at i:67418163 original size:38 final size:38
Alignment explanation
Indices: 67418099--67418171 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
67418089 TAATTTAATA
* *
67418099 ATTATCTTATTGTATTTTATTAATTTAATGTTAAAGTG
1 ATTATCTTATTGTATTTTATGAATTTAATATTAAAGTG
67418137 ATTATCTTA-T-TATTTTAATGAGATTTAATATTAAA
1 ATTATCTTATTGTATTTT-ATGA-ATTTAATATTAAA
67418172 TTTAATCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 6 0.19
37 4 0.13
38 21 0.68
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (38 bp):
ATTATCTTATTGTATTTTATGAATTTAATATTAAAGTG
Found at i:67419793 original size:19 final size:20
Alignment explanation
Indices: 67419771--67419808 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67419761 TGCATTTATT
*
67419771 TAATA-TTTATTTTTTTAAA
1 TAATACTTTAATTTTTTAAA
67419790 TAATACTTTAATTTTTTAA
1 TAATACTTTAATTTTTTAA
67419809 TAAATATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
TAATACTTTAATTTTTTAAA
Found at i:67425560 original size:38 final size:38
Alignment explanation
Indices: 67425489--67425561 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
67425479 ATTTATAATT
**
67425489 TTTTTGTTTAATCAACTTAAAATGATTGAAGGTTATAA
1 TTTTTGTTTAATCAACTTAAAATGAAGGAAGGTTATAA
* *
67425527 TTTTTGTTTACTC-ACTTCAAAATGAAGGTAGGTTA
1 TTTTTGTTTAATCAACTT-AAAATGAAGGAAGGTTA
67425562 ATTTTATTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 4 0.13
38 26 0.87
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (38 bp):
TTTTTGTTTAATCAACTTAAAATGAAGGAAGGTTATAA
Found at i:67428170 original size:13 final size:13
Alignment explanation
Indices: 67428154--67428204 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
67428144 TTTAAACCAA
*
67428154 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
*
67428167 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
67428180 ACTTTTCCATAGC
1 ACTTTTCAAAAGC
67428193 ACTTTTCAAAAG
1 ACTTTTCAAAAG
67428205 TATTGCCAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:67428376 original size:91 final size:93
Alignment explanation
Indices: 67428221--67428390 Score: 254
Period size: 91 Copynumber: 1.8 Consensus size: 93
67428211 CAAACTAACC
* * **
67428221 CTTAATGGCCAGCACCACCTTGATTTTTGACCCAATTATTACCTGATGATTGTGTTAGGCTT-AA
1 CTTAATGGCCAGCACCACCTTGATTTTTGACCCAATAATCACCTGATGATTGTGCCAGGCTTAAA
67428285 AAAAA-TAATTTTTTTTGGGTTGGGAGA
66 AAAAATTAATTTTTTTTGGGTTGGGAGA
** * *
67428312 CTTAATGGCTGGCACCACCTTGATTTTTGACCCAATAATCACTTGATGATTGTGCCAGGTTTAAA
1 CTTAATGGCCAGCACCACCTTGATTTTTGACCCAATAATCACCTGATGATTGTGCCAGGCTTAAA
67428377 AAAAATTAATTTTT
66 AAAAATTAATTTTT
67428391 GGGATTGGGG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
91 54 0.78
92 7 0.10
93 8 0.12
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (93 bp):
CTTAATGGCCAGCACCACCTTGATTTTTGACCCAATAATCACCTGATGATTGTGCCAGGCTTAAA
AAAAATTAATTTTTTTTGGGTTGGGAGA
Found at i:67428399 original size:91 final size:92
Alignment explanation
Indices: 67428221--67428413 Score: 250
Period size: 91 Copynumber: 2.1 Consensus size: 92
67428211 CAAACTAACC
* * * **
67428221 CTTAATGGCCAGCACCACCTTGATTTTTGACCCAATTATTACCTGATGATTGTGTTAGGCTTAAA
1 CTTAATGGCTAGCACCACCTTGATTTTTGACCCAATAATCACCTGATGATTGTGCCAGGCTTAAA
*
67428286 AAAATAATTTTTTTTGGGTT-GGGAGA
66 AAAATAATTATTTTTGGGTTGGGGAGA
* * *
67428312 CTTAATGGCTGGCACCACCTTGATTTTTGACCCAATAATCACTTGATGATTGTGCCAGG-TTTAA
1 CTTAATGGCTAGCACCACCTTGATTTTTGACCCAATAATCACCTGATGATTGTGCCAGGCTTAAA
*
67428376 AAAA-AATTAATTTTTGGGATTGGGGGGA
66 AAAATAATT-ATTTTTGGG-TTGGGGAGA
67428404 CTTAA-GGCTA
1 CTTAATGGCTA
67428414 TTTGACAAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
89 4 0.05
90 16 0.18
91 58 0.66
92 10 0.11
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (92 bp):
CTTAATGGCTAGCACCACCTTGATTTTTGACCCAATAATCACCTGATGATTGTGCCAGGCTTAAA
AAAATAATTATTTTTGGGTTGGGGAGA
Found at i:67431988 original size:21 final size:21
Alignment explanation
Indices: 67431960--67432015 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 21
67431950 TGTAAAGTAA
67431960 AATAATTTAAATA-AAAAATT
1 AATAATTTAAATATAAAAATT
*
67431980 AATACATTTAAATATAAAAAAT
1 AATA-ATTTAAATATAAAAATT
*
67432002 -ATTATTTAAATATA
1 AATAATTTAAATATA
67432016 CATTTAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 15 0.47
21 11 0.34
22 6 0.19
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
AATAATTTAAATATAAAAATT
Found at i:67432125 original size:24 final size:23
Alignment explanation
Indices: 67432094--67432156 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 23
67432084 ATTATATACA
67432094 ATAAAGTAAATAAATTATTCAATT
1 ATAAAGTAAATAAATTATTC-ATT
67432118 ATAAAGTAAATAAATTATTCATT
1 ATAAAGTAAATAAATTATTCATT
*
67432141 TTAAAGATTAAATAAA
1 ATAAAG--TAAATAAA
67432157 AAACTAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
23 8 0.22
24 20 0.56
25 8 0.22
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.37
Consensus pattern (23 bp):
ATAAAGTAAATAAATTATTCATT
Found at i:67433880 original size:41 final size:41
Alignment explanation
Indices: 67433827--67433942 Score: 187
Period size: 41 Copynumber: 2.8 Consensus size: 41
67433817 CTATTTAAAA
* *
67433827 TCACACACTAAGTGCCATATGTAGCTGAAGTTATCTCATTC
1 TCACACACTAAGTGCCATATGTAGCCGAAGCTATCTCATTC
67433868 TCACACACTAAGTGCCATATGTAGCCGAAGCTATCTCATTC
1 TCACACACTAAGTGCCATATGTAGCCGAAGCTATCTCATTC
** *
67433909 TCGTACACTAAGTGCCATATATAGCCGAAGCTAT
1 TCACACACTAAGTGCCATATGTAGCCGAAGCTAT
67433943 GACGAATCAC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (41 bp):
TCACACACTAAGTGCCATATGTAGCCGAAGCTATCTCATTC
Found at i:67433973 original size:40 final size:39
Alignment explanation
Indices: 67433790--67433974 Score: 154
Period size: 41 Copynumber: 4.6 Consensus size: 39
67433780 CGATATCTCG
* * * * * *
67433790 CACACTAAGTGTCGTACATAGCTGAAGCTATTTAAAATCA
1 CACACTAAGTGCCATATATAGCCGAAGCTA-TCACAATCA
* * * * *
67433830 CACACTAAGTGCCATATGTAGCTGAAGTTATCTCATTCTCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATCACA--ATCA
* * * *
67433871 CACACTAAGTGCCATATGTAGCCGAAGCTATCTCATTCT
1 CACACTAAGTGCCATATATAGCCGAAGCTATCACAATCA
*
67433910 CGTACACTAAGTGCCATATATAGCCGAAGCTATGACGAATCA
1 C--ACACTAAGTGCCATATATAGCCGAAGCTATCAC-AATCA
* *
67433952 CACACTAAGTGCCACAAATAGCC
1 CACACTAAGTGCCATATATAGCC
67433975 AATTTTTTAT
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 5 0.04
40 45 0.38
41 66 0.55
42 4 0.03
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (39 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCACAATCA
Found at i:67438706 original size:30 final size:30
Alignment explanation
Indices: 67438670--67438732 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
67438660 AATTATTTTA
67438670 TTGTTAATTTTGTTA-GTATTTTAAAGACAT
1 TTGTTAATTTTGTTATG-ATTTTAAAGACAT
* *
67438700 TTGTTAATTTTGTTATGATTTTAGAGGCAT
1 TTGTTAATTTTGTTATGATTTTAAAGACAT
67438730 TTG
1 TTG
67438733 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.25, C:0.03, G:0.17, T:0.54
Consensus pattern (30 bp):
TTGTTAATTTTGTTATGATTTTAAAGACAT
Found at i:67438878 original size:12 final size:12
Alignment explanation
Indices: 67438857--67438890 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
67438847 TATATATTTT
*
67438857 AAAATTATATAA
1 AAAATAATATAA
67438869 AAAATAATATAA
1 AAAATAATATAA
*
67438881 AAATTAATAT
1 AAAATAATAT
67438891 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:67442817 original size:11 final size:11
Alignment explanation
Indices: 67442795--67442850 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
67442785 GGGATCACTA
67442795 ACTAATACTAAT
1 ACTAATA-TAAT
67442807 A-TAATATTAAT
1 ACTAATA-TAAT
* *
67442818 A-AAATAGAAT
1 ACTAATATAAT
67442828 ACTAATATAAT
1 ACTAATATAAT
*
67442839 ACTAATAGAAT
1 ACTAATATAAT
67442850 A
1 A
67442851 GAAAATGAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
10 4 0.11
11 32 0.86
12 1 0.03
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.32
Consensus pattern (11 bp):
ACTAATATAAT
Found at i:67442836 original size:27 final size:27
Alignment explanation
Indices: 67442798--67442853 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
67442788 ATCACTAACT
*
67442798 AATACTAATATAATATTAATAAAATAG
1 AATACTAATATAATACTAATAAAATAG
*
67442825 AATACTAATATAATACTAATAGAATAG
1 AATACTAATATAATACTAATAAAATAG
67442852 AA
1 AA
67442854 AATGAAATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (27 bp):
AATACTAATATAATACTAATAAAATAG
Found at i:67449572 original size:46 final size:46
Alignment explanation
Indices: 67449435--67449606 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
67449425 TGGGTAAGGT
* * *
67449435 GCCGATGCCATGTTCCAGACATAGTCTTACATTGGCTCACATCTCAA
1 GCCGATGCCATG-TCCAGACATAGTCTTACACTGGCTTACATCTCGA
** * * *
67449482 GTTGATGCCATATTCCAGACATGGTCTTACACTGACTATA-ATCTCGTA
1 GCCGATGCCAT-GTCCAGACATAGTCTTACACTGGCT-TACATCTCG-A
67449530 GCCGATG-CATGTCCAAGACAT-GTCTTACACTGGCTTACATCTCGA
1 GCCGATGCCATGTCC-AGACATAGTCTTACACTGGCTTACATCTCGA
*
67449575 GGCCGATG-CATGTCCCATACAT-GTCTTACACT
1 -GCCGATGCCATGT-CCAGACATAGTCTTACACT
67449607 AGCACTCGTC
Statistics
Matches: 105, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
45 3 0.03
46 49 0.47
47 46 0.44
48 7 0.07
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
GCCGATGCCATGTCCAGACATAGTCTTACACTGGCTTACATCTCGA
Found at i:67449597 original size:93 final size:94
Alignment explanation
Indices: 67449435--67449606 Score: 217
Period size: 93 Copynumber: 1.8 Consensus size: 94
67449425 TGGGTAAGGT
* ** *
67449435 GCCGATGCCATGTTCCAGACATAGTCTTACATTGGCTCACATCTCAAGTTGATGCCATATTCCAG
1 GCCGATGCCATGTTCCAGACATAGTCTTACACTGGCTCACATCTCAAGCCGATGCCATATCCCAG
67449500 ACATGGTCTTACACTGACTATAATCTCGTA
66 ACAT-GTCTTACACTGACTATAATCTCGTA
* * *
67449530 GCCGATG-CATG-TCCAAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATG-CATGTCCC
1 GCCGATGCCATGTTCC-AGACATAGTCTTACACTGGCTCACATCTC-AAGCCGATGCCATATCCC
*
67449591 ATACATGTCTTACACT
64 AGACATGTCTTACACT
67449607 AGCACTCGTC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
92 10 0.15
93 34 0.51
94 16 0.24
95 7 0.10
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (94 bp):
GCCGATGCCATGTTCCAGACATAGTCTTACACTGGCTCACATCTCAAGCCGATGCCATATCCCAG
ACATGTCTTACACTGACTATAATCTCGTA
Found at i:67449703 original size:46 final size:46
Alignment explanation
Indices: 67449530--67449705 Score: 150
Period size: 46 Copynumber: 3.8 Consensus size: 46
67449520 TAATCTCGTA
* * * * *
67449530 GCCGATGCATGTCCAAGACATGTCTTACACTGGCT-TACAT-CTCGAG
1 GCCGATGCATGTCCCATACATGTCTTACACTAGCTCT-CATAAT-GTG
*
67449576 GCCGATGCATGTCCCATACATGTCTTACACTAGCACTCGTCTTAA--T-
1 GCCGATGCATGTCCCATACATGTCTTACACTAG--CTC-TCATAATGTG
* *
67449622 GCTGATACCATGT--CATGGACATGGTCTTACACTAGCTCTCATAATGTG
1 GCCGAT-GCATGTCCCAT--ACAT-GTCTTACACTAGCTCTCATAATGTG
67449670 GCCGATGCATGTCCCATACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCATACATGTCTTACACTAGCTC
67449706 ACGCAACTAA
Statistics
Matches: 105, Mismatches: 11, Indels: 28
0.73 0.08 0.19
Matches are distributed among these distances:
45 8 0.08
46 53 0.50
47 19 0.18
48 19 0.18
49 5 0.05
50 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCATACATGTCTTACACTAGCTCTCATAATGTG
Found at i:67452595 original size:23 final size:23
Alignment explanation
Indices: 67452569--67452615 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
67452559 TTGTCGTTGC
67452569 CTTAGATTCAACTCCTTTTGAGT
1 CTTAGATTCAACTCCTTTTGAGT
67452592 CTTAGATTCAACTCCTTTTGAGT
1 CTTAGATTCAACTCCTTTTGAGT
67452615 C
1 C
67452616 ATCAAGTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (23 bp):
CTTAGATTCAACTCCTTTTGAGT
Found at i:67457323 original size:94 final size:92
Alignment explanation
Indices: 67457197--67457367 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 92
67457187 TCTCCTAGCC
* *
67457197 GATGCATGTCCCAGGCATGTCTTACACTGGCTTACGT-CTCGA-GGCCAATGCATGTCCTAGACA
1 GATGCATGTCCCAGGCATGTCTTACACTGGCTTACATAAT--ATGGCCAATGCATGTCCTAGACA
67457260 TGTCTTACACTAGCACTCGTCTTAATGCT
64 TGTCTTACACTAGCACTCGTCTTAATGCT
* *
67457289 GATGCCATGTCCC-GGACATGGTCTTACACTGGCTTTCATAATATGGCCGATGCATGTCCTAGAC
1 GATG-CATGTCCCAGG-CAT-GTCTTACACTGGCTTACATAATATGGCCAATGCATGTCCTAGAC
*
67457353 ATGTCTTACAGTAGC
63 ATGTCTTACACTAGC
67457368 TCAGGCAAGT
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
92 6 0.09
93 12 0.17
94 50 0.72
95 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGGCATGTCTTACACTGGCTTACATAATATGGCCAATGCATGTCCTAGACATG
TCTTACACTAGCACTCGTCTTAATGCT
Found at i:67459792 original size:17 final size:17
Alignment explanation
Indices: 67459770--67459821 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
67459760 ATAGAAACAT
*
67459770 AATCTTCGAAGATATGC
1 AATCTTAGAAGATATGC
*
67459787 AATCTTAGATATGATATGT
1 AATCTTAGA-A-GATATGC
*
67459806 AATCTTAAAAGATATG
1 AATCTTAGAAGATATG
67459822 ATTCATTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 14 0.47
18 2 0.07
19 14 0.47
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (17 bp):
AATCTTAGAAGATATGC
Found at i:67459840 original size:22 final size:23
Alignment explanation
Indices: 67459793--67459835 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
67459783 ATGCAATCTT
67459793 AGATATGA-TATGTAATCTTAAA
1 AGATATGATTATGTAATCTTAAA
67459815 AGATATGATTCAT-TAATCTTA
1 AGATATGATT-ATGTAATCTTA
67459836 GAGATTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.42
23 9 0.47
24 2 0.11
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAAA
Found at i:67464204 original size:27 final size:27
Alignment explanation
Indices: 67464173--67464245 Score: 128
Period size: 27 Copynumber: 2.7 Consensus size: 27
67464163 TTAGTTTACC
*
67464173 AAATTACTAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
*
67464200 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAATTTGTA
67464227 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
67464246 GTAGGGTAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.44, C:0.23, G:0.04, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAATTTGTA
Found at i:67464261 original size:27 final size:27
Alignment explanation
Indices: 67464228--67464639 Score: 545
Period size: 27 Copynumber: 15.3 Consensus size: 27
67464218 TAATTTGTGA
*
67464228 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67464255 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
67464282 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67464309 AATTACCAAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
67464336 AATTACCGAAATACCCCTGTAGAATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
67464363 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
67464390 AATTACCGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67464417 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67464444 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
67464471 AATTATCTATATATCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
67464498 AAATACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67464525 AATTACTGAAATACCCGTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67464552 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
67464579 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
67464606 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
67464633 AATTACC
1 AATTACC
67464640 ATTTTGCCCC
Statistics
Matches: 346, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 346 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:67465063 original size:6 final size:6
Alignment explanation
Indices: 67465054--67465141 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
67465044 TTGCATTCAC
* * * *
67465054 ATTCTT ATTCTG ATTCTG -TCACCTG ATACTG ATTCTG ACTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
67465103 -TCACCTG ATTCTG ATTCTG ATTCTA ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
67465142 AATGTTTCTT
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 3 0.05
6 53 0.82
7 7 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (6 bp):
ATTCTG
Found at i:67465087 original size:19 final size:18
Alignment explanation
Indices: 67465062--67465121 Score: 60
Period size: 19 Copynumber: 3.6 Consensus size: 18
67465052 ACATTCTTAT
67465062 TCTGATTCTGTCACCTGA
1 TCTGATTCTGTCACCTGA
67465080 TACTGATTCTG--A-C---
1 T-CTGATTCTGTCACCTGA
67465093 TCTGATTCTGTCACCTGA
1 TCTGATTCTGTCACCTGA
67465111 TTCTGATTCTG
1 -TCTGATTCTG
67465122 ATTCTAATTC
Statistics
Matches: 34, Mismatches: 0, Indels: 15
0.69 0.00 0.31
Matches are distributed among these distances:
12 9 0.26
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 19 0.56
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.42
Consensus pattern (18 bp):
TCTGATTCTGTCACCTGA
Found at i:67465097 original size:31 final size:31
Alignment explanation
Indices: 67465062--67465132 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
67465052 ACATTCTTAT
67465062 TCTGATTCTGTCACCTGATACTGATTCTGAC
1 TCTGATTCTGTCACCTGATACTGATTCTGAC
* *
67465093 TCTGATTCTGTCACCTGATTCTGATTCTGAT
1 TCTGATTCTGTCACCTGATACTGATTCTGAC
*
67465124 TCTAATTCT
1 TCTGATTCT
67465133 AGTTCTGATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.44
Consensus pattern (31 bp):
TCTGATTCTGTCACCTGATACTGATTCTGAC
Found at i:67465856 original size:40 final size:41
Alignment explanation
Indices: 67465786--67465863 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
67465776 GTTACAATCG
* *
67465786 CATTAAACCAAAGCTATCTCAGTATCGCACACTTAGTGTCA
1 CATTAAACCAAAGCTATCTCAATATCGCACACTAAGTGTCA
* * *
67465827 CATTCAACCGAAGCTATTTCAAT-TCGCACACTAAGTG
1 CATTAAACCAAAGCTATCTCAATATCGCACACTAAGTG
67465864 CTATATATAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
40 13 0.41
41 19 0.59
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (41 bp):
CATTAAACCAAAGCTATCTCAATATCGCACACTAAGTGTCA
Found at i:67489345 original size:16 final size:17
Alignment explanation
Indices: 67489321--67489394 Score: 69
Period size: 18 Copynumber: 4.3 Consensus size: 17
67489311 AAAAATAGAA
*
67489321 ATAATAATATAT-AAAT
1 ATAAAAATATATAAAAT
67489337 ATAAAAATATATAAAAT
1 ATAAAAATATATAAAAT
* * *
67489354 ATTTAGAATATATAAAAA
1 A-TAAAAATATATAAAAT
* *
67489372 ATAAAATAGATATAATAT
1 ATAAAA-ATATATAAAAT
67489390 ATAAA
1 ATAAA
67489395 TAGATTGAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
16 11 0.24
17 8 0.17
18 27 0.59
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
ATAAAAATATATAAAAT
Found at i:67496072 original size:20 final size:20
Alignment explanation
Indices: 67496026--67496064 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67496016 AGGGACAATT
*
67496026 AGAAAAGAAAAAAATTAAGA
1 AGAAAAGAAAAAAATTAACA
*
67496046 AAAAAAGAAAAAAATTAAC
1 AGAAAAGAAAAAAATTAAC
67496065 TTGAAAAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.10, T:0.10
Consensus pattern (20 bp):
AGAAAAGAAAAAAATTAACA
Found at i:67496621 original size:21 final size:21
Alignment explanation
Indices: 67496596--67496639 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
67496586 TACTTTATTT
67496596 ATTTTTTTAACTTTTAAC-TC
1 ATTTTTTTAACTTTTAACTTC
*
67496616 ATTTTTTTAGCTTTTAACTTC
1 ATTTTTTTAACTTTTAACTTC
67496637 ATT
1 ATT
67496640 ACTTTATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.23, C:0.14, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTTTTTTAACTTTTAACTTC
Found at i:67496645 original size:21 final size:20
Alignment explanation
Indices: 67496601--67496645 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
67496591 TATTTATTTT
**
67496601 TTTAACTTTTAACTCATTTT
1 TTTAACTTTTAACTCATTAC
*
67496621 TTTAGCTTTTAACTTCATTAC
1 TTTAACTTTTAAC-TCATTAC
67496642 TTTA
1 TTTA
67496646 TATAATTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.24, C:0.16, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTAACTTTTAACTCATTAC
Found at i:67498218 original size:46 final size:46
Alignment explanation
Indices: 67498165--67498283 Score: 168
Period size: 46 Copynumber: 2.6 Consensus size: 46
67498155 TGTGCTAGTC
* * *
67498165 TAAGACATGTCCGGGACATGCATCGGC-TACATTATGAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATACA-GACGAGAGCCAGTG
** *
67498211 TAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATACAGACGAGAGCCAGTG
67498257 TAAGACATGTCTGGGACATGCATCGGC
1 TAAGACATGTCTGGGACATGCATCGGC
67498284 CTCGAGATAT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 64 0.97
47 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGGCATACAGACGAGAGCCAGTG
Found at i:67498324 original size:48 final size:46
Alignment explanation
Indices: 67498158--67498324 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 46
67498148 TGATATGTGT
* * * * *
67498158 GCTAGTCTAAGACATGTCCGGGACATGCATCGGC-TAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGA-GAAGAAA
* * * *
67498204 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAAGAAA
* *
67498250 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGA-AGA-AA
* *
67498298 GCTAGTGTAAGACCTGTCTGGAACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
67498325 GTGTCTGATA
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
46 74 0.72
47 3 0.03
48 26 0.25
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAAGAAA
Found at i:67508245 original size:49 final size:49
Alignment explanation
Indices: 67508192--67508349 Score: 142
Period size: 49 Copynumber: 3.2 Consensus size: 49
67508182 TAAAACCCGC
* *
67508192 CTGGGACATGGCATCAACACT-GATAGATGAGAGCCAGTGTAAGACTTGT
1 CTGGGACATGGCATCAAC-CTCGATAGATGAAAGCCAATGTAAGACTTGT
* ** * ** * *
67508241 CTGGGACACGGCATCGGCCTCGATATATGAAAGTTAATGTAAGACCTGC
1 CTGGGACATGGCATCAACCTCGATAGATGAAAGCCAATGTAAGACTTGT
* * **
67508290 CTGGGACATGGCATCAACTTGGAT-G-TGCTAGCCAATGTAAGACCTTGT
1 CTGGGACATGGCATCAACCTCGATAGATGAAAGCCAATGTAAGA-CTTGT
*
67508338 CTAGGACATGGC
1 CTGGGACATGGC
67508350 GTTGGCATCT
Statistics
Matches: 84, Mismatches: 23, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
47 13 0.15
48 16 0.19
49 55 0.65
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (49 bp):
CTGGGACATGGCATCAACCTCGATAGATGAAAGCCAATGTAAGACTTGT
Found at i:67521801 original size:14 final size:13
Alignment explanation
Indices: 67521781--67521812 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
67521771 AATATTTGAC
67521781 TTGTTCTTAATTA
1 TTGTTCTTAATTA
67521794 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
67521808 TTGTT
1 TTGTT
67521813 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:67522965 original size:580 final size:578
Alignment explanation
Indices: 67521864--67523024 Score: 1846
Period size: 580 Copynumber: 2.0 Consensus size: 578
67521854 GATGAGGAAT
*
67521864 AGACCCTTTCTAAGAGTAAATTTGTCATAATTAAGCGGAGTTGATTGCGCGCCTAGAGATAGGGT
1 AGACCCTGTCTAAGAGTAAATTTGTCATAATTAAGCGGAGTTGATTGCGCGCCTAGAGATAGGGT
*
67521929 GATAAGATTTTACCGGATTAGGGTGAAACCTAATAAGGGAATCCATAGATCGAGTTAATGCAATT
66 GACAAGATTTTACCGGATTAGGGTGAAACCTAATAAGGGAATCCATAGATCGAGTTAATGCAATT
* **
67521994 CTAGGGTGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGGTTAGATGTTATTAGTCTCGAG
131 CTAGGGTGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGATTAGACATTATTAGTCTCGAG
*
67522059 AGAGATAATAATATAACTTAGGGATTTCTATGGATCAAGTCAAATGAATAAATAGTTTGATTCAA
196 AGAGATAATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATAGTTTGATTCAA
*
67522124 AGTCAAATAACAAGTGAAGTCTAGGTGGATCTGTCCTTAGGTATTGTCTCAATCAATCGAATTTT
261 AGTCAAATAACAAGTGAAGTCTAGGTGGATCTGTCCTT--GTATTGTCTCAATCAATCAAATTTT
* *
67522189 CCCAAAAGTATTTTCCCAAGTTTTTCTTTCTGTGCATTCTTAGTTTGTAATTAGTTTAGACAACC
324 CCCAAAAGTATTTTCCCAAGTTTTTCTTTCTGTGCATTCTTAGTTAGTAATTAGTTCAGACAACC
* **
67522254 AAAACTCTTAAATTTTAGGCTAGATAATAAAAAGGAAGTAAGTACTTATAGTTCCTTTGGGTTTG
389 AAAACTCTTAAATTTTAGGCTAGATAATAAAAAGGAAGTAAGTACTCATAGTTCCTTTGGGTTCA
* * *
67522319 GCAATCCGGTCTTGCTGAACTATACTACTGTTCGATAGGTACACTTACATTAATCATGAGAATAA
454 ACAATCCGGTCTTGCTAAACTATACTACTATTCGATAGGTACACTTACATTAATCATGAGAATAA
*** * *
67522384 GTTAGTCTCAAGAATGTTTCATTTATAAATCTTTAAAACCTGTTATGAATACCACGCATC
519 GTTAGTCTCAAGAAAAATTCATGTATAAATCTTTAAAACCTGTTACGAATACCACGCATC
* * *
67522444 AGACCCTGTCTAAGAGTAAATTTGTCGTAATTGAGTGGAGTTGATTGCGCGCCTAGAGATAGGGT
1 AGACCCTGTCTAAGAGTAAATTTGTCATAATTAAGCGGAGTTGATTGCGCGCCTAGAGATAGGGT
* * *
67522509 GACAAGATTTTGCTGGATTAGGGTGAAACCTAATAGGGGAATCCATAGATCGAGTTAATGCAATT
66 GACAAGATTTTACCGGATTAGGGTGAAACCTAATAAGGGAATCCATAGATCGAGTTAATGCAATT
67522574 CTAGGGTGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGATTAGACATTATTAGTCTCGAG
131 CTAGGGTGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGATTAGACATTATTAGTCTCGAG
* * *
67522639 AGAGATAATAATATAACTTAGGGATTTCTACGGATCAAGTCAATTGAATAAATTGTTTGATTCAG
196 AGAGATAATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATAGTTTGATTCAA
* *
67522704 AGTCAAATAACAAGTGAAGTCTAGGTGGATTTTTCC-T-TA-TGTCTCAATCAATCAAATTTTCC
261 AGTCAAATAACAAGTGAAGTCTAGGTGGATCTGTCCTTGTATTGTCTCAATCAATCAAATTTTCC
*
67522766 CAAAAGTATTTTCCCAAG-TTTTCTTTCTG-GACATTCTTAGTTAGTAATTAGTTCAGATAACCA
326 CAAAAGTATTTTCCCAAGTTTTTCTTTCTGTG-CATTCTTAGTTAGTAATTAGTTCAGACAACCA
* *
67522829 AACCTCTTAATTTTTAGGCTAGATAATAAAAAGGAAGTAAATACTAGTACTCATAGTTCCTTTGG
390 AAACTCTTAAATTTTAGGCTAGATAATAAAAAGGAAG----TA--AGTACTCATAGTTCCTTTGG
* * * *
67522894 GTTCAACAATCCGGTCTTGCTAAACTATACTACTATTCGATAGGTTCACTTGCCTTAATCATGAT
449 GTTCAACAATCCGGTCTTGCTAAACTATACTACTATTCGATAGGTACACTTACATTAATCATGAG
* *
67522959 AATAAGTTAGTCTCAAGAAAAATTCATGTATAAATTTTTAAAACCTGTTACGAATATCACGCATC
514 AATAAGTTAGTCTCAAGAAAAATTCATGTATAAATCTTTAAAACCTGTTACGAATACCACGCATC
67523024 A
1 A
67523025 ATAAGGTCAC
Statistics
Matches: 534, Mismatches: 40, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
573 1 0.00
574 75 0.14
575 40 0.07
576 2 0.00
578 2 0.00
579 1 0.00
580 413 0.77
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (578 bp):
AGACCCTGTCTAAGAGTAAATTTGTCATAATTAAGCGGAGTTGATTGCGCGCCTAGAGATAGGGT
GACAAGATTTTACCGGATTAGGGTGAAACCTAATAAGGGAATCCATAGATCGAGTTAATGCAATT
CTAGGGTGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGATTAGACATTATTAGTCTCGAG
AGAGATAATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATAGTTTGATTCAA
AGTCAAATAACAAGTGAAGTCTAGGTGGATCTGTCCTTGTATTGTCTCAATCAATCAAATTTTCC
CAAAAGTATTTTCCCAAGTTTTTCTTTCTGTGCATTCTTAGTTAGTAATTAGTTCAGACAACCAA
AACTCTTAAATTTTAGGCTAGATAATAAAAAGGAAGTAAGTACTCATAGTTCCTTTGGGTTCAAC
AATCCGGTCTTGCTAAACTATACTACTATTCGATAGGTACACTTACATTAATCATGAGAATAAGT
TAGTCTCAAGAAAAATTCATGTATAAATCTTTAAAACCTGTTACGAATACCACGCATC
Found at i:67526365 original size:22 final size:22
Alignment explanation
Indices: 67526340--67526384 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
67526330 GGGAGGCCAA
67526340 GGAAATCAGAGACCACCTCCAG
1 GGAAATCAGAGACCACCTCCAG
67526362 GGAAATCAGAGACCACCTCCAG
1 GGAAATCAGAGACCACCTCCAG
67526384 G
1 G
67526385 CTACCAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.31, G:0.24, T:0.09
Consensus pattern (22 bp):
GGAAATCAGAGACCACCTCCAG
Found at i:67533873 original size:47 final size:45
Alignment explanation
Indices: 67533771--67533975 Score: 159
Period size: 47 Copynumber: 4.4 Consensus size: 45
67533761 TCATCTGTGT
*
67533771 CGATGCCATGTCCCAGACA-GGTCTTACACTGACACATGTCAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCAAGC
* * *
67533815 CGATGCCATGTCACAGACATGGTCTTACACTAGCTCACATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCAAGC
* * * * * *
67533862 GGATGCTATGTCCCAAACATGGTCTTACATTGACTATCATCATCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-A-CATC-TC-AAGC
* * * *
67533911 CGATG-CGTGTCCGAGACA-CGTCTTACACT-AGCACTTGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CAC--ATCTCAA-GC
67533957 CGATG-CATGTCCCAGACAT
1 CGATGCCATGTCCCAGACAT
67533976 ATCTTACTCT
Statistics
Matches: 126, Mismatches: 23, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
44 18 0.14
45 14 0.11
46 24 0.19
47 52 0.41
48 11 0.09
49 7 0.06
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (45 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCAAGC
Found at i:67533981 original size:46 final size:46
Alignment explanation
Indices: 67533911--67534034 Score: 119
Period size: 46 Copynumber: 2.7 Consensus size: 46
67533901 TCATCGAGGT
* * * *
67533911 CGATGCGTGTCCGAGACACGTCTTACACTAGCACTTGTCTCAAT-GC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTT-TCACAATGGC
* * * *
67533957 CGATGCATGTCCCAGACATATCTTACTCT-G-GCTTTCACTATGCGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTTTCACAAT--GGC
*
67534003 CGATACATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
67534035 GCACATATCA
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
43 5 0.08
44 3 0.05
45 1 0.02
46 52 0.84
47 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTTTCACAATGGC
Found at i:67539545 original size:29 final size:30
Alignment explanation
Indices: 67539489--67539545 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
67539479 GTTCGATTAC
* *
67539489 TTTTGGTTGAGTCTTGTTAGTGTCATTAGT
1 TTTTGGTTGAATCTTGTTAGTGTAATTAGT
*
67539519 TTTTGGTTGAAT-TTGTTAGTTTAATTA
1 TTTTGGTTGAATCTTGTTAGTGTAATTA
67539546 TATTCATGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.18, C:0.04, G:0.23, T:0.56
Consensus pattern (30 bp):
TTTTGGTTGAATCTTGTTAGTGTAATTAGT
Found at i:67540874 original size:17 final size:18
Alignment explanation
Indices: 67540834--67540867 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67540824 ATTTTTGAAG
*
67540834 ACTTTTATTTATTATTTT
1 ACTTTTATCTATTATTTT
67540852 ACTTTTATCT-TTATTT
1 ACTTTTATCTATTATTT
67540868 ATCTTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.71
Consensus pattern (18 bp):
ACTTTTATCTATTATTTT
Found at i:67546850 original size:24 final size:24
Alignment explanation
Indices: 67546664--67546889 Score: 90
Period size: 25 Copynumber: 9.2 Consensus size: 24
67546654 TCCCTATATT
67546664 TGGCTC-TGATGAGCTTCCCGTTATA
1 TGGCTCTTG-TGAGCTTCCCGTT-TA
* * *
67546689 TGGTTATTGTGAGCTTCCCTTTTA
1 TGGCTCTTGTGAGCTTCCCGTTTA
* ** *
67546713 TGGCTCTTCG-AAGCTTCCCAATAA
1 TGGCTCTT-GTGAGCTTCCCGTTTA
* * * *
67546737 TTTGTTCTT-TGGAGCTTCCCGATAA
1 -TGGCTCTTGT-GAGCTTCCCGTTTA
* * *
67546762 CTAGCTCTTTTGAGCTT-CCGTTAA
1 -TGGCTCTTGTGAGCTTCCCGTTTA
*
67546786 TGGCTCTCTG-GAGCTTCCCG-ATA
1 TGGCTCT-TGTGAGCTTCCCGTTTA
*
67546809 TTGG--CTTGCTAGAACTTCCCGTTTA
1 -TGGCTCTTG-T-GAGCTTCCCGTTTA
* *
67546834 TGGCTCTTGTGAGCTTCCTGTTACA
1 TGGCTCTTGTGAGCTTCCCGTT-TA
*** *
67546859 TGGCTCACATGAGCTTCCTGTTTA
1 TGGCTCTTGTGAGCTTCCCGTTTA
67546883 TGTGCTC
1 TG-GCTC
67546890 GTATGCACAT
Statistics
Matches: 154, Mismatches: 30, Indels: 34
0.71 0.14 0.16
Matches are distributed among these distances:
21 2 0.01
22 2 0.01
23 13 0.08
24 56 0.36
25 74 0.48
26 7 0.05
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.39
Consensus pattern (24 bp):
TGGCTCTTGTGAGCTTCCCGTTTA
Found at i:67546932 original size:19 final size:19
Alignment explanation
Indices: 67546908--67546957 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
67546898 ATTCCTATAT
*
67546908 ATGAATTGACGGATAATAC
1 ATGAATTGAAGGATAATAC
67546927 ATGAATTGAAGGATAATAC
1 ATGAATTGAAGGATAATAC
67546946 ATGAATTGAAGG
1 ATGAATTGAAGG
67546958 GTTACAGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (19 bp):
ATGAATTGAAGGATAATAC
Found at i:67547276 original size:24 final size:24
Alignment explanation
Indices: 67547244--67547291 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
67547234 GAATGATAAG
67547244 TTAATTTCTCGTTATACGAACTTA
1 TTAATTTCTCGTTATACGAACTTA
*
67547268 TTAATTTCTTGTTATACGAACTTA
1 TTAATTTCTCGTTATACGAACTTA
67547292 CTAAGCATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.08, T:0.48
Consensus pattern (24 bp):
TTAATTTCTCGTTATACGAACTTA
Found at i:67556711 original size:22 final size:23
Alignment explanation
Indices: 67556664--67556715 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
67556654 CATGTGATTT
* *
67556664 TATATTTTTAATTTATTAAATAA
1 TATATTTTTAAATTATCAAATAA
67556687 TATATTTTTACAATT-TCAAAT-A
1 TATATTTTTA-AATTATCAAATAA
67556709 TATATTT
1 TATATTT
67556716 ACGCTAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 8 0.31
23 15 0.58
24 3 0.12
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (23 bp):
TATATTTTTAAATTATCAAATAA
Found at i:67561156 original size:33 final size:34
Alignment explanation
Indices: 67561108--67561173 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
67561098 ATGACTGCTA
67561108 CTGATACTATAATGGG-CAAGGCCCTAATGCATG
1 CTGATACTATAATGGGTCAAGGCCCTAATGCATG
* * *
67561141 CTGATACTGTGATGGGTTAAGGCCCTAATGCAT
1 CTGATACTATAATGGGTCAAGGCCCTAATGCAT
67561174 ACTAGTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 14 0.48
34 15 0.52
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (34 bp):
CTGATACTATAATGGGTCAAGGCCCTAATGCATG
Found at i:67561183 original size:34 final size:34
Alignment explanation
Indices: 67561125--67561198 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
67561115 TATAATGGGC
* * **
67561125 AAGGCCCTAATGCATGCTGATACTGTGATGGGTT
1 AAGGCCCTAATGCATACTGATACTGAGATGGACT
67561159 AAGGCCCTAATGCATACT-AGTACTGAGATGGACT
1 AAGGCCCTAATGCATACTGA-TACTGAGATGGACT
67561193 AAGGCC
1 AAGGCC
67561199 AAACTGTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 1 0.03
34 34 0.97
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (34 bp):
AAGGCCCTAATGCATACTGATACTGAGATGGACT
Found at i:67573102 original size:16 final size:18
Alignment explanation
Indices: 67573075--67573109 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
67573065 CATTACCTCA
67573075 AAATTAATAAGATT-TGG
1 AAATTAATAAGATTATGG
67573092 AAATT-ATAAGATTATGG
1 AAATTAATAAGATTATGG
67573109 A
1 A
67573110 TATCACAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (18 bp):
AAATTAATAAGATTATGG
Found at i:67575845 original size:12 final size:12
Alignment explanation
Indices: 67575828--67575853 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67575818 TTGCCTGCCA
67575828 TTGAATAAAATC
1 TTGAATAAAATC
67575840 TTGAATAAAATC
1 TTGAATAAAATC
67575852 TT
1 TT
67575854 TTTTAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (12 bp):
TTGAATAAAATC
Found at i:67584618 original size:17 final size:17
Alignment explanation
Indices: 67584598--67584652 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
67584588 ACTTTTAGGG
67584598 TAAAAATATTTTTGAGA
1 TAAAAATATTTTTGAGA
* *
67584615 TAAAAATATTGTT-ATA
1 TAAAAATATTTTTGAGA
*
67584631 T-AAAATACTTTTGAGA
1 TAAAAATATTTTTGAGA
*
67584647 CAAAAA
1 TAAAAA
67584653 ATAATTTACA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
15 9 0.30
16 5 0.17
17 16 0.53
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.36
Consensus pattern (17 bp):
TAAAAATATTTTTGAGA
Found at i:67584897 original size:3 final size:3
Alignment explanation
Indices: 67584889--67584920 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
67584879 AACCACAAAA
67584889 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
67584921 AAAGAAAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:67589295 original size:181 final size:182
Alignment explanation
Indices: 67588944--67589313 Score: 582
Period size: 181 Copynumber: 2.0 Consensus size: 182
67588934 AATAAATAAG
* * *
67588944 AAAGAGAAGGATCAAGTGTACTCCCCGTGTATGTTTAATTCGGTAGAGGGTGGTTTGGGTAGTTC
1 AAAGAGAAGGATCAAGTGTACTCCCCATGTATGTTTAATTCAGCAGAGGGTGGTTTGGGTAGTTC
*
67589009 GGGTTGGACCTGGTTGGTTCGGTCCTAGGTGTATGTTTCAACAAATGGCAGCACTGAAATTTTAC
66 GGGTTGGACCTGGTTGGTTCGGTCCTAGGTGTATGTTTCAACAAATGGCAGCACTGAAATTTCAC
* * * *
67589074 AAGGTGTGCTCGTCCTACAAAAGAAATCCCATTTTGATTTATTTTTGCATGA
131 AAGGCGTGCCCGTCCTACAAAAAAAATCCCATTCTGATTTATTTTTGCATGA
* *
67589126 AAAGGGAAGGGTCAAGTGTACT-CCCATGTATGTTTAATTCAGCAGAGGGTGGTTTGGGTAGTTC
1 AAAGAGAAGGATCAAGTGTACTCCCCATGTATGTTTAATTCAGCAGAGGGTGGTTTGGGTAGTTC
*** *
67589190 GGGTTGGTTTTGGTTGGTTCGGTCCTAGGTGTATGTTTCAACAAATGGCATCACTGAAATTTCAC
66 GGGTTGGACCTGGTTGGTTCGGTCCTAGGTGTATGTTTCAACAAATGGCAGCACTGAAATTTCAC
*
67589255 AAGGCGTGCCCGTGCC-ACAAAAAAAATCCGATTCTGATTTATTTTTGCATGA
131 AAGGCGTGCCCGT-CCTACAAAAAAAATCCCATTCTGATTTATTTTTGCATGA
67589307 AAAGAGA
1 AAAGAGA
67589314 TAGCCTCCAC
Statistics
Matches: 171, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
181 149 0.87
182 22 0.13
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (182 bp):
AAAGAGAAGGATCAAGTGTACTCCCCATGTATGTTTAATTCAGCAGAGGGTGGTTTGGGTAGTTC
GGGTTGGACCTGGTTGGTTCGGTCCTAGGTGTATGTTTCAACAAATGGCAGCACTGAAATTTCAC
AAGGCGTGCCCGTCCTACAAAAAAAATCCCATTCTGATTTATTTTTGCATGA
Found at i:67589418 original size:14 final size:16
Alignment explanation
Indices: 67589389--67589421 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
67589379 AACTAAACTG
67589389 AATTCAAAATTAAATA
1 AATTCAAAATTAAATA
67589405 AATT-AAAA-TAAATA
1 AATTCAAAATTAAATA
67589419 AAT
1 AAT
67589422 ATGGGTTGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 4 0.24
16 4 0.24
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AATTCAAAATTAAATA
Found at i:67591678 original size:18 final size:16
Alignment explanation
Indices: 67591651--67591693 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
67591641 TAGTTAAATA
67591651 AATTTAAATAAAACTCTT
1 AATTT-AATAAAACTC-T
*
67591669 AATTATAATAGAACTCT
1 AATT-TAATAAAACTCT
67591686 AATTTAAT
1 AATTTAAT
67591694 TTAAATAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 4 0.17
17 5 0.22
18 13 0.57
19 1 0.04
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (16 bp):
AATTTAATAAAACTCT
Found at i:67593803 original size:42 final size:42
Alignment explanation
Indices: 67593738--67593817 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
67593728 CATAATGATG
* * *
67593738 CCATGTCCCAGACATGGTCTTACACG-AAATCTTATAACAATT
1 CCATATCCCAGACATGATATTACACGTAAA-CTTATAACAATT
*
67593780 CCATATCCCAGATATGATATTACACGTAAACTTATAAC
1 CCATATCCCAGACATGATATTACACGTAAACTTATAAC
67593818 CCTAATGTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 30 0.91
43 3 0.09
ACGTcount: A:0.36, C:0.25, G:0.10, T:0.29
Consensus pattern (42 bp):
CCATATCCCAGACATGATATTACACGTAAACTTATAACAATT
Found at i:67601835 original size:53 final size:53
Alignment explanation
Indices: 67601754--67601904 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
67601744 CTTACACGGT
* *
67601754 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
67601809 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
67601862 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
67601905 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:67603754 original size:41 final size:41
Alignment explanation
Indices: 67603692--67603813 Score: 199
Period size: 41 Copynumber: 3.0 Consensus size: 41
67603682 AGAAAAAGGC
*
67603692 ATAACGTTAATAGATGCACCTAAGTCGCACGTGACTTTTGT
1 ATAACGTTAATAGATGCACCTAAGTCGCACATGACTTTTGT
*
67603733 ATAATGTTAATAGATGCACCTAAGTCGCACATGACTTTTGT
1 ATAACGTTAATAGATGCACCTAAGTCGCACATGACTTTTGT
* *
67603774 ATAACATTAATAGATGCACCTAAGTCGAACATGACCTTTT
1 ATAACGTTAATAGATGCACCTAAGTCGCACATGA-CTTTT
67603814 TAATTCCAAC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
41 70 0.93
42 5 0.07
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (41 bp):
ATAACGTTAATAGATGCACCTAAGTCGCACATGACTTTTGT
Found at i:67605744 original size:27 final size:27
Alignment explanation
Indices: 67605713--67605767 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
67605703 TATAGAGCAG
67605713 TAGGGTCAAATCCATAGAGATTGGTTA
1 TAGGGTCAAATCCATAGAGATTGGTTA
67605740 TAGGGTCAAATCCATAGAGATTGGTTA
1 TAGGGTCAAATCCATAGAGATTGGTTA
67605767 T
1 T
67605768 CTAATTTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (27 bp):
TAGGGTCAAATCCATAGAGATTGGTTA
Found at i:67611323 original size:17 final size:16
Alignment explanation
Indices: 67611300--67611359 Score: 59
Period size: 16 Copynumber: 3.7 Consensus size: 16
67611290 TTAATAAGAT
67611300 TTAATATTAAATTTAA
1 TTAATATTAAATTTAA
* *
67611316 TCTAATATTTATTTTAA
1 T-TAATATTAAATTTAA
* *
67611333 TAAATATTATA-TTAA
1 TTAATATTAAATTTAA
67611348 TTTAATATTAAA
1 -TTAATATTAAA
67611360 GTGATTAAGT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
15 4 0.12
16 16 0.47
17 14 0.41
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAATATTAAATTTAA
Found at i:67614381 original size:50 final size:50
Alignment explanation
Indices: 67614266--67614551 Score: 461
Period size: 50 Copynumber: 5.8 Consensus size: 50
67614256 GATAATAACA
* ** * *
67614266 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
67614317 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
67614367 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
67614417 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA---CTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
67614464 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
67614514 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAC
67614552 TCTTTACCCA
Statistics
Matches: 219, Mismatches: 13, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
47 47 0.21
50 139 0.63
51 33 0.15
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:67614496 original size:97 final size:97
Alignment explanation
Indices: 67614266--67614553 Score: 459
Period size: 97 Copynumber: 2.9 Consensus size: 97
67614256 GATAATAACA
** * * *
67614266 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGGTGCCCATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAATGCCATGT
* *
67614331 CCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
65 CCCAGACATGGTCTTACATGGGA---CTCATCTCGG
*
67614367 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
67614432 CCAGACATGGTCTTACATGGGACTCATCTCGG
66 CCAGACATGGTCTTACATGGGACTCATCTCGG
*
67614464 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
67614529 CCAGACATGGTCTTACATGGGACTC
66 CCAGACATGGTCTTACATGGGACTC
67614554 TTTACCCAAA
Statistics
Matches: 178, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
97 99 0.56
100 43 0.24
101 36 0.20
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.26
Consensus pattern (97 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
CCAGACATGGTCTTACATGGGACTCATCTCGG
Found at i:67614537 original size:147 final size:148
Alignment explanation
Indices: 67614266--67614551 Score: 475
Period size: 147 Copynumber: 1.9 Consensus size: 148
67614256 GATAATAACA
* * *
67614266 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGGTGCCCATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA---TCTCATCTCGGTGCCAATGCCATGT
*
67614331 CCCAGACATGGTCTTATAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTT
63 CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTT
67614396 ACATGGGACCTCTCATCTCGG
128 ACATGGGACCTCTCATCTCGG
*
67614417 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CTCATCTCGGTGCCAATGCCATGTCCC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTCATCTCGGTGCCAATGCCATGTCCC
* *
67614481 AGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACA
66 AGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACA
67614546 TGGGAC
131 TGGGAC
67614552 TCTTTACCCA
Statistics
Matches: 128, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
147 92 0.72
151 36 0.28
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (148 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTCATCTCGGTGCCAATGCCATGTCCC
AGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACA
TGGGACCTCTCATCTCGG
Found at i:67614663 original size:13 final size:13
Alignment explanation
Indices: 67614647--67614677 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
67614637 TGCTTGATCA
*
67614647 TCATCAAATAAAT
1 TCATAAAATAAAT
67614660 TCATAAAATAAAT
1 TCATAAAATAAAT
67614673 TCATA
1 TCATA
67614678 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:67619976 original size:13 final size:13
Alignment explanation
Indices: 67619960--67619985 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67619950 AAGTTAGCTG
67619960 AGATGGTTAATGC
1 AGATGGTTAATGC
67619973 AGATGGTTAATGC
1 AGATGGTTAATGC
67619986 GGAGATGTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
AGATGGTTAATGC
Found at i:67624826 original size:21 final size:21
Alignment explanation
Indices: 67624802--67624841 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
67624792 TAGAACGACG
*
67624802 TAGTTTTGCCTTTTAACTTAA
1 TAGTTTTGACTTTTAACTTAA
67624823 TAGTTTTGACTTTTAACTT
1 TAGTTTTGACTTTTAACTT
67624842 TAGAAAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.10, T:0.55
Consensus pattern (21 bp):
TAGTTTTGACTTTTAACTTAA
Found at i:67630236 original size:17 final size:17
Alignment explanation
Indices: 67630196--67630227 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67630186 TCAAAGTTGC
67630196 AATAATTATACATTTAA
1 AATAATTATACATTTAA
67630213 AATAATTATA-ATTTA
1 AATAATTATACATTTA
67630228 TTAAAAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAATTATACATTTAA
Found at i:67630381 original size:6 final size:6
Alignment explanation
Indices: 67630370--67630396 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
67630360 GGAAAACGTC
67630370 AATTAT AATTAT AATTAT AATTAT AAT
1 AATTAT AATTAT AATTAT AATTAT AAT
67630397 ATTTTCAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTAT
Found at i:67630502 original size:44 final size:44
Alignment explanation
Indices: 67630454--67630539 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
67630444 AGCAAAACAA
* * *
67630454 AAGTTGTTATAAGTATACATTTAAAAATAATTGTAATTTAATAG
1 AAGTTGTGATAAGTACACATTTAAAAATAATTATAATTTAATAG
* *
67630498 AAGTTGTGATAATTACATATTTAAAAATAATTATAATTTAAT
1 AAGTTGTGATAAGTACACATTTAAAAATAATTATAATTTAAT
67630540 TTACAATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (44 bp):
AAGTTGTGATAAGTACACATTTAAAAATAATTATAATTTAATAG
Found at i:67630559 original size:260 final size:257
Alignment explanation
Indices: 67630146--67630617 Score: 603
Period size: 259 Copynumber: 1.8 Consensus size: 257
67630136 ATTTTTCTTT
* * *
67630146 ATATTACTAAATTTACATTTAGAAAAAAGTTAAAGTAAAATCAAAGTTGCAATAATTATACATTT
1 ATATTACTAAATTCACATTTAGAAAAAAGTTAAAGCAAAATCAAAGTTGCAATAAGTATACATTT
* * *
67630211 AAAATAATTATAATTTATTAAAAATTGAAATTGTGACCAATTATATTTTAGAAATAATTATAATT
66 AAAATAATTATAA-TTATT--AAATAGAAATTGTGACCAATTACATTTTAAAAATAATTATAATT
* * * * *
67630276 TAATTTACAATTATTAATTAAAAATGTTGTGCTAATTTTAAAATAGATTTATTACTTAAATAAAA
128 TAATTTACAATTATTAATTAAAAA-ATTCTACTAACTTTAAAATAGAGTTATTACTTAAATAAAA
*
67630341 ATCTAAGCTTAAAATATAGGGAAAACGTCAATTATAATTATAATTATAATTATAATATTTTCAAT
192 ATCTAAGCATAAAATATAGGGAAAACGTCAATTATAATTATAATTATAATTATAATATTTTCAAT
67630406 C
257 C
* **
67630407 ATATTACTAAATTCACATTTAGAAATTAAATAGTTGAAGCAAAA-CAAAAGTTGTTATAAGTATA
1 ATATTACTAAATTCACATTTAG-AA--AAA-AGTTAAAGCAAAATC-AAAGTTGCAATAAGTATA
* * *
67630471 CATTTAAAAATAATTGTAA-T-TT-AATAGAAGTTGTGA-TAATTACATATTTAAAAATAATTAT
61 CATTT-AAAATAATTATAATTATTAAATAGAAATTGTGACCAATTACAT-TTTAAAAATAATTAT
* *
67630532 AATTTAATTTACAATTATTAGTTAAAAAATTCTACTAACTTTAAAATAGAGTTATTACTTGAATA
124 AATTTAATTTACAATTATTAATTAAAAAATTCTACTAACTTTAAAATAGAGTTATTACTTAAATA
* * *
67630597 GAACTCTAAGCATAGAATATA
189 AAAATCTAAGCATAAAATATA
67630618 AGAAAATGTT
Statistics
Matches: 181, Mismatches: 23, Indels: 16
0.82 0.10 0.07
Matches are distributed among these distances:
259 55 0.30
260 53 0.29
261 21 0.12
262 2 0.01
263 2 0.01
264 5 0.03
265 31 0.17
266 12 0.07
ACGTcount: A:0.47, C:0.07, G:0.08, T:0.38
Consensus pattern (257 bp):
ATATTACTAAATTCACATTTAGAAAAAAGTTAAAGCAAAATCAAAGTTGCAATAAGTATACATTT
AAAATAATTATAATTATTAAATAGAAATTGTGACCAATTACATTTTAAAAATAATTATAATTTAA
TTTACAATTATTAATTAAAAAATTCTACTAACTTTAAAATAGAGTTATTACTTAAATAAAAATCT
AAGCATAAAATATAGGGAAAACGTCAATTATAATTATAATTATAATTATAATATTTTCAATC
Found at i:67630649 original size:6 final size:6
Alignment explanation
Indices: 67630633--67630673 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
67630623 ATGTTGTGAT
*
67630633 AATTAC GATTAC AATTAC AATTAC AATTAC AATTAC AATTA
1 AATTAC AATTAC AATTAC AATTAC AATTAC AATTAC AATTA
67630674 TTAGTTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.34
Consensus pattern (6 bp):
AATTAC
Found at i:67630844 original size:15 final size:15
Alignment explanation
Indices: 67630824--67630853 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67630814 GTTAATTAGT
67630824 TATTGTTTTGAATAA
1 TATTGTTTTGAATAA
*
67630839 TATTGTTTTGCATAA
1 TATTGTTTTGAATAA
67630854 ATTATATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.03, G:0.13, T:0.53
Consensus pattern (15 bp):
TATTGTTTTGAATAA
Found at i:67630918 original size:21 final size:21
Alignment explanation
Indices: 67630889--67630930 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67630879 ATGTTCAGTA
*
67630889 TATTAAAAATATTTTAATTAT
1 TATTAAAAAAATTTTAATTAT
* *
67630910 TATTTAAAAAATTTTTATTAT
1 TATTAAAAAAATTTTAATTAT
67630931 GATATTTGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTAAAAAAATTTTAATTAT
Found at i:67641157 original size:22 final size:22
Alignment explanation
Indices: 67641130--67641175 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
67641120 TCAAAAGATA
67641130 AAATTGAGCCACTTAGTAATTT
1 AAATTGAGCCACTTAGTAATTT
67641152 AAATTGAGCCACTTAGTAATTT
1 AAATTGAGCCACTTAGTAATTT
67641174 AA
1 AA
67641176 GCGATTTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (22 bp):
AAATTGAGCCACTTAGTAATTT
Found at i:67650785 original size:11 final size:11
Alignment explanation
Indices: 67650771--67650796 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67650761 ATTGACATGG
67650771 AATTTACCTAA
1 AATTTACCTAA
67650782 AATTTACCTAA
1 AATTTACCTAA
67650793 AATT
1 AATT
67650797 AGGGCCTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (11 bp):
AATTTACCTAA
Found at i:67655162 original size:16 final size:17
Alignment explanation
Indices: 67655131--67655163 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67655121 TTCATAAGTA
67655131 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
67655148 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
67655164 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:67655509 original size:46 final size:47
Alignment explanation
Indices: 67655444--67655732 Score: 291
Period size: 46 Copynumber: 6.0 Consensus size: 47
67655434 TTATCTTTAA
* * * * * *
67655444 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATAT
*
67655490 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATAT
* * * **
67655536 CACGCTACCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCCCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATAT
*
67655582 CATGTTGCCATGGTATCTTTCAAACATGGTCTTATTCA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATAT
* *
67655628 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTT----A----TT-CA-TTTTCATAT
* **
67655685 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATAT
67655731 CA
1 CA
67655733 GGGAACACAC
Statistics
Matches: 209, Mismatches: 22, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
45 4 0.02
46 157 0.75
48 2 0.01
50 1 0.00
53 1 0.00
54 2 0.01
55 2 0.01
57 40 0.19
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATAT
Found at i:67655616 original size:92 final size:92
Alignment explanation
Indices: 67655459--67655732 Score: 332
Period size: 92 Copynumber: 2.9 Consensus size: 92
67655449 TGCCATAGTG
* * ** *
67655459 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCCATCATGTTGCCATGGTATCTTTCAAACATGGTCTTA
*
67655524 TTCATTTCATGTCACGCTACCATGGTA
66 TTCATTTCATATCACGCTACCATGGTA
*
67655551 TCTTTCAACCATGGTCTTATTCATTTCCCATCATGTTGCCATGGTATCTTTCAAACATGGTCTTA
1 TCTTTCAACCATGGTCTTACTCATTTCCCATCATGTTGCCATGGTATCTTTCAAACATGGTCTTA
* *
67655616 TTCATTTCATATCACGTTGCCATGGTA
66 TTCATTTCATATCACGCTACCATGGTA
*
67655643 TCTTTCAACCATGGTCTTACACATTTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAA
1 TCTTTCAACCATGGTCTTACTCATTTC---C-CA--TC--AT---GTTGCCATGGTATCTTTCAA
* **
67655708 CCATGGTCTTACACATTTCATATCA
55 ACATGGTCTTATTCATTTCATATCA
67655733 GGGAACACAC
Statistics
Matches: 157, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
92 108 0.69
95 1 0.01
96 2 0.01
98 2 0.01
100 2 0.01
103 42 0.27
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.41
Consensus pattern (92 bp):
TCTTTCAACCATGGTCTTACTCATTTCCCATCATGTTGCCATGGTATCTTTCAAACATGGTCTTA
TTCATTTCATATCACGCTACCATGGTA
Found at i:67655682 original size:57 final size:57
Alignment explanation
Indices: 67655618--67655726 Score: 209
Period size: 57 Copynumber: 1.9 Consensus size: 57
67655608 TGGTCTTATT
67655618 CATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTTACA
1 CATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTTACA
*
67655675 CATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
1 CATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
67655727 ATATCAGGGA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.39
Consensus pattern (57 bp):
CATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTTACA
Found at i:67663946 original size:29 final size:29
Alignment explanation
Indices: 67663907--67663963 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
67663897 AGGGTATAAG
67663907 AAAGCTTACACTCAGAACTTTAGGATAGA
1 AAAGCTTACACTCAGAACTTTAGGATAGA
67663936 AAAGCTTACACTCAGAACTTTAGGATAG
1 AAAGCTTACACTCAGAACTTTAGGATAG
67663964 GGGTTTAGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.25
Consensus pattern (29 bp):
AAAGCTTACACTCAGAACTTTAGGATAGA
Found at i:67669123 original size:17 final size:19
Alignment explanation
Indices: 67669089--67669131 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 19
67669079 GAAACATGAG
67669089 TTGAGCTCGTATCTTTTGA
1 TTGAGCTCGTATCTTTTGA
67669108 -TGAGCTCGTA-CTTTTGA
1 TTGAGCTCGTATCTTTTGA
67669125 TTGAGCT
1 TTGAGCT
67669132 TGCAAACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.16, C:0.16, G:0.23, T:0.44
Consensus pattern (19 bp):
TTGAGCTCGTATCTTTTGA
Found at i:67671429 original size:39 final size:40
Alignment explanation
Indices: 67671375--67671552 Score: 211
Period size: 40 Copynumber: 4.5 Consensus size: 40
67671365 CAACCAAGTA
* * **
67671375 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTTAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
67671414 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67671454 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
67671494 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
67671534 CCGTCGAGG-CTTAGCCCGG
1 CCTTCG-GGACTTAGCCCGG
67671553 TTATCATCCG
Statistics
Matches: 123, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 15 0.12
40 106 0.86
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67679402 original size:40 final size:40
Alignment explanation
Indices: 67679334--67679540 Score: 289
Period size: 40 Copynumber: 5.2 Consensus size: 40
67679324 CCTTCGAAAT
* *
67679334 TTAG-CCGGACATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
67679373 TTAGCCC-GATTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGA-TATAGTAACTCGCACAAATGCCTTCGGGAC
67679413 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
67679453 TTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGGC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
67679493 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCGTCGGG-C
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
67679532 TTAGCCCGG
1 TTAGCCCGG
67679541 TTATCATCCG
Statistics
Matches: 155, Mismatches: 8, Indels: 10
0.90 0.05 0.06
Matches are distributed among these distances:
39 18 0.12
40 135 0.87
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:67684536 original size:5 final size:5
Alignment explanation
Indices: 67684526--67684551 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
67684516 GTGTTTTAAG
67684526 TAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA T
67684552 TAAAGCAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:67686453 original size:44 final size:44
Alignment explanation
Indices: 67686390--67687319 Score: 1020
Period size: 44 Copynumber: 21.1 Consensus size: 44
67686380 CGGGAACACC
* * * ** * *
67686390 AATCTGTTATTTTCAATCTGCTCTCTACCAATATAGATACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * * *
67686434 AATCTG-TCATTTTCGATCTGCCCTCTGACAATACAGAGACACCA
1 AATCTGCT-ATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
** * * *
67686478 AATCTATTATATTCGATTTGCTCTCCGCCACTACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * * * **
67686522 AATCTGTTATCTTCGATCTGCTCTCCGGCACTAAAGAGATGGAA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * *
67686566 AATCTGTTATCTTCGATCTGCTCTCCGCCATTATAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * *
67686610 AATTTGCTATCTTCGATCTACTCTCCGCCAATATAGAGACGCTA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * * *
67686654 AATCTGCTATCTTTGATCTGCTCTCCACCAACACAGAGAAGCCG
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
*
67686698 AATCTG-TCATCTTCGATCTGCTCTCCG-CAACTACAGAGATGCCA
1 AATCTGCT-ATCTTCGATCTGCTCTCCGCCAA-TACAGAGACGCCA
* * * *
67686742 AATCTGTTATCTTCGATCTGCGCTCCGCCACTACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * * *
67686786 AATCTGCTATCTTCGATCTGCTCTCTGTCAACATAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * * *
67686830 AATCTGTTATCTTCGATCTGCTCTCTGCCACTTCAGAGAGGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* **
67686874 AATCTGCTATCTTCGATCTACTCTCCGCCAATAGGGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * *
67686918 AATCTGCTATCTTCGATCTGCTCTCCGCTACTACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * * *
67686962 AATCTGTTATCTTCGATCTGCACACCGCCACTACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
** * * *
67687006 AATCTGCTATCTTCGATCTGCTCTTTGTCAACACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * * *
67687050 AATATGTTATCTTCGATCTGCTCTCTGCCACTACAGAGACGTCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
*
67687094 AATCTGCTATCTTCGATCTGCTCTCCGCCAACACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * *
67687138 AATCTGCTATTTTTGATCTGCTCTCCGCCAATACAGAAATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * *
67687182 AATCTGCTATTTTCGATCTGCTCTCTGCCAATATAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * * *
67687226 AATCTGCTATCTTCGATTTGCTCTCCACCACTACAGAGATGCTA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
* * *
67687270 AATCTGCTATCTTCGATTTGCTCTCCGCTACTACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
67687314 AATCTG
1 AATCTG
67687320 TCTGGTCTTG
Statistics
Matches: 754, Mismatches: 126, Indels: 12
0.85 0.14 0.01
Matches are distributed among these distances:
43 5 0.01
44 745 0.99
45 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (44 bp):
AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
Found at i:67687962 original size:260 final size:262
Alignment explanation
Indices: 67687499--67688569 Score: 1290
Period size: 260 Copynumber: 4.1 Consensus size: 262
67687489 TCGAGAAGAT
* * * * * * *
67687499 AAGATCTACAATCTTCAGCCCAATTCACTACAACCTTAGGGAGCTAGAACTTGCTTAAATCTGCT
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACCTTAGGGAGCTAGGAGTGGCTTAAATCTGCT
* * * * *
67687564 TCGCTGCATCTTCAGGAAGC-CAAGATTTATCGTCTTTGATTTGCCTCACTGCAACTTCAGGGAG
66 TCACTGCAACTTCAGGAAGCTC-AGATTTATCGTCTTCGATCTGCCTCACTGCAACTTCAGGGAA
* * *
67687628 ACGAGATCT-ACAATCCTCAGCTTACTCCACTACAACTTTAGAGAGCTAGAACT-T-GCTTAAAT
130 ACAAGATCTGA-AAT-CTCAGCCTACTCCACTACAACTTTAGAGAGCTAG-GCTGTGGCTTAAAT
*
67687690 CTGCTTTACTGCAACATCAGGAAGC-CTAGATTCGCCGTCTTCGATCTGCCCCACTGCAATCTCA
192 CTGCTTCACTGCAACATCAGGAAGCTC-AGATTCGCCGTCTTCGATCTGCCCCACTGCAATCTCA
*
67687754 GGGAAGC
256 GGGAAAC
*
67687761 AAGATCTATAATCTTCAGCCTACTCCACTACAACCTTAGGGAGCTAGGA-T-GCTTAAATCTGCT
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACCTTAGGGAGCTAGGAGTGGCTTAAATCTGCT
* * * * * *
67687824 TCGCTGCATCTTCAGGAAGC-CAAGATTTATCTTCTTTGATTTGCCTCACTGCAACTTCAGGGAG
66 TCACTGCAACTTCAGGAAGCTC-AGATTTATCGTCTTCGATCTGCCTCACTGCAACTTCAGGGAA
* *
67687888 GCGAGATCT-ACAATCCTCAGCCTACTCCACTACAACTTTAGAGAGCTAGGACT-T-GCTTAAAT
130 ACAAGATCTGA-AAT-CTCAGCCTACTCCACTACAACTTTAGAGAGCTAGG-CTGTGGCTTAAAT
* * *
67687950 CTGCTTTACTGCAACATCAGAAAGC-CTAGATTCGCCGTCTTCGATCTGCCCTACTGCAATCTCA
192 CTGCTTCACTGCAACATCAGGAAGCTC-AGATTCGCCGTCTTCGATCTGCCCCACTGCAATCTCA
67688014 GGGAAAC
256 GGGAAAC
* *
67688021 AAGATCTATAATCTTCAGCCTACTCCACTACAACCTTAGGGAGCTAGGATGGTGGCTTAAATCTA
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACCTTAGGGAGCTAGGA--GTGGCTTAAATCTG
* ** ** *
67688086 CTTCACTGCAACTTTAGGAAGCTCAGATTCGTCGTCTTCGATCTGTTTCACTGTAACTTCAGGGA
64 CTTCACTGCAACTTCAGGAAGCTCAGATTTATCGTCTTCGATCTGCCTCACTGCAACTTCAGGGA
* * * * *
67688151 AACAAGATCTTGAAATTTTAGCTTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAAT
129 AACAAGATC-TGAAATCTCAGCCTACTCCACTACAACTTTAGAGAGCTAGGCT-GTGGCTTAAAT
* ** * * *
67688216 CTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCTTCACTTCAATTTTAG
192 CTGCTTCACTGCAACATCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCCCCACTGCAATCTCAG
67688281 GGAAAC
257 GGAAAC
* * *
67688287 AAGATCTAAAAT-TTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTG
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACCTTAGGGAGCTAGG--AGTGGCTTAAATCTG
** * *
67688351 CTTCACTGCAACTTCAGGAAGCTCAGATTTGCCATCTTCGATCTGCTTCACTGCAACTTCAGGGA
64 CTTCACTGCAACTTCAGGAAGCTCAGATTTATCGTCTTCGATCTGCCTCACTGCAACTTCAGGGA
* * * *
67688416 AACAAGATCTGAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATC
129 AACAAGATCTGAAATCTCAGCCTACTCCACTACAACTTTAGAGAGCTAGGCT-GTGGCTTAAATC
* * ** * *
67688481 TGCTTCACTGCAA-ATTCAGGAAGCTCAGATTCGTCGTCTTTGATCTGCTTCACTTCAATTTCAG
193 TGCTTCACTGCAACA-TCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCCCCACTGCAATCTCAG
67688545 GGAAAC
257 GGAAAC
67688551 AAGATCTAAAAT-TTCAGCC
1 AAGATCTAAAATCTTCAGCC
67688570 CCATAGGCCC
Statistics
Matches: 736, Mismatches: 58, Indels: 28
0.90 0.07 0.03
Matches are distributed among these distances:
260 251 0.34
261 1 0.00
262 44 0.06
263 2 0.00
264 237 0.32
265 120 0.16
266 80 0.11
267 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (262 bp):
AAGATCTAAAATCTTCAGCCTACTCCACTACAACCTTAGGGAGCTAGGAGTGGCTTAAATCTGCT
TCACTGCAACTTCAGGAAGCTCAGATTTATCGTCTTCGATCTGCCTCACTGCAACTTCAGGGAAA
CAAGATCTGAAATCTCAGCCTACTCCACTACAACTTTAGAGAGCTAGGCTGTGGCTTAAATCTGC
TTCACTGCAACATCAGGAAGCTCAGATTCGCCGTCTTCGATCTGCCCCACTGCAATCTCAGGGAA
AC
Found at i:67688264 original size:45 final size:45
Alignment explanation
Indices: 67688209--67688545 Score: 127
Period size: 45 Copynumber: 7.6 Consensus size: 45
67688199 AGGTTGGTGG
* *
67688209 CTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCGT
1 CTTAGATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCAT
* * * * * * ***
67688254 CTTCGATCTGCTTCACTTCAATTTTAGGGAAAC-AAGA-TCTAAAAT
1 CTTAGATCTGCTTCACTGCAACTTCA-GGAAGCTCAGATTC-GCCAT
* * * * * * * * ****
67688299 TTTAG-CCTACTCCACTACAACTTTAGGGAGCT-AGGTT-GGTGG
1 CTTAGATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCAT
* *
67688341 CTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTTGCCAT
1 CTTAGATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCAT
* * * **
67688386 CTTCGATCTGCTTCACTGCAACTTCAGGGAAAC-AAGA-TCTGAAAT
1 CTTAGATCTGCTTCACTGCAACTTCA-GGAAGCTCAGATTC-GCCAT
* * * * * * * * ****
67688431 TTTAG-CCTACTCCACTACAACTTTAGGGAGCT-AGGTT-GGTGG
1 CTTAGATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCAT
* * * *
67688473 CTTAAATCTGCTTCACTGCAAATTCAGGAAGCTCAGATTCGTCGT
1 CTTAGATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCAT
* * *
67688518 CTTTGATCTGCTTCACTTCAATTTCAGG
1 CTTAGATCTGCTTCACTGCAACTTCAGG
67688546 GAAACAAGAT
Statistics
Matches: 201, Mismatches: 77, Indels: 28
0.66 0.25 0.09
Matches are distributed among these distances:
42 7 0.03
43 53 0.26
44 43 0.21
45 88 0.44
46 10 0.05
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (45 bp):
CTTAGATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCAT
Found at i:67688359 original size:132 final size:133
Alignment explanation
Indices: 67687499--67688569 Score: 1182
Period size: 132 Copynumber: 8.2 Consensus size: 133
67687489 TCGAGAAGAT
* * * * * **
67687499 AAGATCTACAATCTTCAGCCCAATTCACTACAACCTTAGGGAGCTAGAACT--T-GCTTAAATCT
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAG-GTTGGTGGCTTAAATCT
* * *** * * *
67687561 GCTTCGCTGCATCTTCAGGAAGCCAAGATTTATCGTCTTTGATTTGCCTCACTGCAACTTCAGGG
65 GCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGGG
*
67687626 AGAC
130 AAAC
* * * * * **
67687630 GAGATCTACAATCCTCAGCTTACTCCACTACAACTTTAGAGAGCTAGAACT--T-GCTTAAATCT
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAG-GTTGGTGGCTTAAATCT
* * * **
67687692 GCTTTACTGCAACATCAGGAAGCCTAGATTCGCCGTCTTCGATCTGCCCCACTGCAA-TCTCAGG
65 GCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTTCACTGCAACT-TCAGG
*
67687756 GAAGC
129 GAAAC
* * *
67687761 AAGATCTATAATCTTCAGCCTACTCCACTACAACCTTAGGGAGCTA-G--GAT-GCTTAAATCTG
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTG
* * *** * * * *
67687822 CTTCGCTGCATCTTCAGGAAGCCAAGATTTATCTTCTTTGATTTGCCTCACTGCAACTTCAGGGA
66 CTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGGGA
**
67687887 GGC
131 AAC
* * * * *
67687890 GAGATCTACAATCCTCAGCCTACTCCACTACAACTTTAGAGAGCTAGGACT--T-GCTTAAATCT
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGG-TTGGTGGCTTAAATCT
* * * * *
67687952 GCTTTACTGCAACATCAGAAAGCCTAGATTCGCCGTCTTCGATCTGC-CCTACTGCAA-TCTCAG
65 GCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTTC-ACTGCAACT-TCAG
67688015 GGAAAC
128 GGAAAC
* * * *
67688021 AAGATCTATAATCTTCAGCCTACTCCACTACAACCTTAGGGAGCTAGGATGGTGGCTTAAATCTA
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTG
* * * *
67688086 CTTCACTGCAACTTTAGGAAGCTC-AGATTCGTCGTCTTCGATCTGTTTCACTGTAACTTCAGGG
66 CTTCACTGCAACTTCAGGAAGC-CAAGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGGG
67688150 AAAC
130 AAAC
* * *
67688154 AAGATCTTGAAAT-TTTAGCTTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCT
1 AAGATC-TAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCT
* * *
67688218 GCTTCACTGCAACTTCAGGAAGCTC-AGATTCGCCGTCTTCGATCTGCTTCACTTCAATTTTAGG
65 GCTTCACTGCAACTTCAGGAAGC-CAAGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGG
67688282 GAAAC
129 GAAAC
*
67688287 AAGATCTAAAAT-TTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTG
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTG
* *
67688351 CTTCACTGCAACTTCAGGAAGCTC-AGATTTGCCATCTTCGATCTGCTTCACTGCAACTTCAGGG
66 CTTCACTGCAACTTCAGGAAGC-CAAGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGGG
67688415 AAAC
130 AAAC
* *
67688419 AAGATCTGAAAT-TTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTG
1 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTG
* * * * *
67688483 CTTCACTGCAAATTCAGGAAGCTC-AGATTCGTCGTCTTTGATCTGCTTCACTTCAATTTCAGGG
66 CTTCACTGCAACTTCAGGAAGC-CAAGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGGG
67688547 AAAC
130 AAAC
67688551 AAGATCTAAAAT-TTCAGCC
1 AAGATCTAAAATCTTCAGCC
67688570 CCATAGGCCC
Statistics
Matches: 816, Mismatches: 107, Indels: 33
0.85 0.11 0.03
Matches are distributed among these distances:
129 106 0.13
130 6 0.01
131 252 0.31
132 261 0.32
133 184 0.23
134 7 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (133 bp):
AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTG
CTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGGGA
AAC
Found at i:67692381 original size:5 final size:5
Alignment explanation
Indices: 67692371--67692422 Score: 72
Period size: 5 Copynumber: 10.6 Consensus size: 5
67692361 AATGCAAATG
*
67692371 ATGCA ATGCA ATGCT ATGCAA ATG-- ATGCA ATGCA ATGCA ATGCA ATGCA
1 ATGCA ATGCA ATGCA ATGC-A ATGCA ATGCA ATGCA ATGCA ATGCA ATGCA
67692420 ATG
1 ATG
67692423 TAAATGCATG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
3 3 0.07
5 36 0.86
6 3 0.07
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.23
Consensus pattern (5 bp):
ATGCA
Found at i:67692394 original size:24 final size:24
Alignment explanation
Indices: 67692361--67692415 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
67692351 TGGGAAATTT
67692361 AATGCAAATGATGCAATGCAATGC
1 AATGCAAATGATGCAATGCAATGC
*
67692385 TATGCAAATGATGCAATGCAATGC
1 AATGCAAATGATGCAATGCAATGC
67692409 AATGCAA
1 AATGCAA
67692416 TGCAATGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (24 bp):
AATGCAAATGATGCAATGCAATGC
Found at i:67699490 original size:18 final size:18
Alignment explanation
Indices: 67699467--67699513 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
67699457 TCTTCAAAAA
*
67699467 GAGTGTTCACACTTGGAG
1 GAGTGTTCACACTTAGAG
*
67699485 GAGTG-TCTATACTTAGAG
1 GAGTGTTC-ACACTTAGAG
*
67699503 TAGTGTTCACA
1 GAGTGTTCACA
67699514 GTGAAAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
17 2 0.09
18 19 0.83
19 2 0.09
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.32
Consensus pattern (18 bp):
GAGTGTTCACACTTAGAG
Found at i:67706098 original size:4 final size:4
Alignment explanation
Indices: 67706084--67706114 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
67706074 TATAAAATCA
67706084 AAAT AAAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AA
67706115 TAAGATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:67707688 original size:103 final size:102
Alignment explanation
Indices: 67707540--67707734 Score: 241
Period size: 103 Copynumber: 1.9 Consensus size: 102
67707530 CAATGTTTAA
** * * **
67707540 ATGTAAGACCATAGCTGGGCTATTGCATTTTAGTGAAAATGCCATAATTAGATTATGGCACCGTG
1 ATGTAAGACCATAGCTGGGCTATTGCATCCTAATGAAAATGCCATAACTAG-TTATGGCACCACG
67707605 AACGTAAGACCATAGTTGGACCATGGCAGTAAATATAC
65 AACGTAAGACCATAGTTGGACCATGGCAGTAAATATAC
* * *
67707643 ATGTAAGACCATAGTTGGGCTA-TGACATCCTAATGATAA-GACCATAACTAGTTATGGCACTAC
1 ATGTAAGACCATAGCTGGGCTATTG-CATCCTAATGAAAATG-CCATAACTAGTTATGGCACCAC
** *
67707706 GAGTGTAAGACCATAGTTGGACTATGGCA
64 GAACGTAAGACCATAGTTGGACCATGGCA
67707735 TCAATAAAAT
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
102 38 0.49
103 40 0.51
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.27
Consensus pattern (102 bp):
ATGTAAGACCATAGCTGGGCTATTGCATCCTAATGAAAATGCCATAACTAGTTATGGCACCACGA
ACGTAAGACCATAGTTGGACCATGGCAGTAAATATAC
Found at i:67709067 original size:27 final size:27
Alignment explanation
Indices: 67709037--67709095 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
67709027 ATTTTCAAAG
67709037 AGTTATTTTATATTCACTTAAATTCTA
1 AGTTATTTTATATTCACTTAAATTCTA
67709064 AGTTATTTTATATTCACTTAAATTCTA
1 AGTTATTTTATATTCACTTAAATTCTA
*
67709091 TGTTA
1 AGTTA
67709096 GCAAGTTGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.53
Consensus pattern (27 bp):
AGTTATTTTATATTCACTTAAATTCTA
Found at i:67709293 original size:24 final size:24
Alignment explanation
Indices: 67709259--67709310 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
67709249 TTTTTTAAAG
* * *
67709259 ATTTAGTATTTGTTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
67709283 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
67709307 ATTT
1 ATTT
67709311 GACCTACGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:67710509 original size:42 final size:42
Alignment explanation
Indices: 67710402--67710561 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 42
67710392 ATATGTGTTA
* * **
67710402 TCGTGTAAGACCACATCTGGGACGTTGGCATCGACTTCTTTTT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGAC-TCTGATT
*
67710445 TACGTGTAAGACCACGTTTGGGACATTGGCATCGTA-TCTGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCG-ACTCTGATT
* * *
67710488 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATGTTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCGA-CTCTGATT
* * ** *
67710531 ACATGTAAGACCACACCTGGGACGTTGGCAT
1 TCGTGTAAGACCACGTCTGGGACATTGGCAT
67710562 TGTATATGCT
Statistics
Matches: 97, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
41 2 0.02
42 28 0.29
43 36 0.37
44 30 0.31
45 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGACTCTGATT
Found at i:67710551 original size:43 final size:42
Alignment explanation
Indices: 67710403--67710561 Score: 153
Period size: 42 Copynumber: 3.7 Consensus size: 42
67710393 TATGTGTTAT
**
67710403 CGTGTAAGACCACATCTGGGACGTTGGCATCGACTTCTTTTTTA
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGA-TT-TTGATTA
* * * * *
67710447 CGTGTAAGACCACGTTTGGGACATTGGCATCG-TATCTGATTT
1 CGTGTAAGACCACATCTGGGACGTTGGCATCGAT-TTTGATTA
*
67710489 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATGTTTGATTA
1 CGTGTAAGACCAC-ATCTGGGAC-GTTGGCATCGAT-TTTGATTA
* *
67710532 CATGTAAGACCACACCTGGGACGTTGGCAT
1 CGTGTAAGACCACATCTGGGACGTTGGCAT
67710562 TGTATATGCT
Statistics
Matches: 94, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 32 0.34
43 31 0.33
44 30 0.32
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCACATCTGGGACGTTGGCATCGATTTTGATTA
Found at i:67710576 original size:86 final size:86
Alignment explanation
Indices: 67710402--67710569 Score: 191
Period size: 85 Copynumber: 2.0 Consensus size: 86
67710392 ATATGTGTTA
** * ***
67710402 TCGTGTAAGACCACATCTGGGACGTTGGCATCGACTTCTTTTTTACGTGTAAGACCACGTTTGGG
1 TCGTGTAAGACCACATCTGGGACGTTGGCATCGACTTCTTGATTACATGTAAGACCACACCTGGG
*
67710467 ACATTGGCATCGTATCTGATT
66 ACATTGGCATCGTATATGATT
*
67710488 TCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGA-TGT-TTGATTACATGTAAGACCACACCT
1 TCGTGTAAGACCAC-ATCTGGGAC-GTTGGCATCGACT-TCTTGATTACATGTAAGACCACACCT
* *
67710549 GGGACGTTGGCATTGTATATG
63 GGGACATTGGCATCGTATATG
67710570 CTTTTCGAGC
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
85 38 0.55
86 30 0.43
87 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (86 bp):
TCGTGTAAGACCACATCTGGGACGTTGGCATCGACTTCTTGATTACATGTAAGACCACACCTGGG
ACATTGGCATCGTATATGATT
Found at i:67710702 original size:27 final size:27
Alignment explanation
Indices: 67710642--67710695 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
67710632 TGAATGAATA
*
67710642 AATGAATATATATCTCATTCAGGTATG
1 AATGAATATATATCTAATTCAGGTATG
67710669 AATGAATATATATCTAATTCAGGTATG
1 AATGAATATATATCTAATTCAGGTATG
67710696 TTTGAATTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (27 bp):
AATGAATATATATCTAATTCAGGTATG
Found at i:67724932 original size:57 final size:58
Alignment explanation
Indices: 67724871--67724988 Score: 141
Period size: 58 Copynumber: 2.1 Consensus size: 58
67724861 TCCTGTTTCC
* * *
67724871 AATATATGATCATA-AGAGTTTAT-TCAGGATTACCCGTCCGGGCTAAATCCTATCTAT
1 AATATATGATCA-AGAGAGTTTATATCAGAATTACCAGTCCAGGCTAAATCCTATCTAT
* * * * *
67724928 AATATATGCTCAAGAGGGTTTATATCAGAATTATCAGTCCAGGCTAAATCCTTTCTGT
1 AATATATGATCAAGAGAGTTTATATCAGAATTACCAGTCCAGGCTAAATCCTATCTAT
67724986 AAT
1 AAT
67724989 GAGGTCAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
56 1 0.02
57 19 0.37
58 31 0.61
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (58 bp):
AATATATGATCAAGAGAGTTTATATCAGAATTACCAGTCCAGGCTAAATCCTATCTAT
Found at i:67729924 original size:39 final size:39
Alignment explanation
Indices: 67729870--67729985 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
67729860 TTCAGTGATG
*
67729870 TATATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
67729909 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
67729948 TCTATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
67729986 ATATGTTCGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:67735638 original size:4 final size:4
Alignment explanation
Indices: 67735629--67735669 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
67735619 TAAATGTTAA
67735629 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
67735670 GAATTAGAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:67736402 original size:24 final size:24
Alignment explanation
Indices: 67736375--67736456 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
67736365 AATAAAAATT
67736375 ATAAAATATAT-TATTTATATATAA
1 ATAAAAT-TATGTATTTATATATAA
* *
67736399 ATAATATTATGTGTTTATATATAA
1 ATAAAATTATGTATTTATATATAA
* * *
67736423 ATAATATTATGTGTTTATATTTAA
1 ATAAAATTATGTATTTATATATAA
* *
67736447 TTATAATTAT
1 ATAAAATTAT
67736457 AAGGCTCATA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
23 3 0.06
24 48 0.94
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (24 bp):
ATAAAATTATGTATTTATATATAA
Found at i:67748241 original size:42 final size:42
Alignment explanation
Indices: 67748182--67748269 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
67748172 ATTAATCCCA
67748182 AATCTTCATAGCTTAGTCATAATCTAAACACAATGAACCTGT
1 AATCTTCATAGCTTAGTCATAATCTAAACACAATGAACCTGT
67748224 AATCTTCATAGCTTAGTCATAATCTAAACACAATGAACCTGT
1 AATCTTCATAGCTTAGTCATAATCTAAACACAATGAACCTGT
67748266 AATC
1 AATC
67748270 ACAAATCTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (42 bp):
AATCTTCATAGCTTAGTCATAATCTAAACACAATGAACCTGT
Found at i:67748341 original size:62 final size:62
Alignment explanation
Indices: 67748265--67748443 Score: 241
Period size: 62 Copynumber: 2.9 Consensus size: 62
67748255 AATGAACCTG
* * * *
67748265 TAATCACAAATCTTCAAAACTCAATTCAAATGCAGTAGCATCATAAGTATCGTCACTACTAT
1 TAATCCCAAATCTTCAAAACTCAATTCAAATGCAGTAGCATCATAAGTACCATCACTACCAT
* * *
67748327 TAATCCCAAATCTTCAAAACTCAATTCAAATGTAGTACCATCCTAAGTACCATCACTACCAT
1 TAATCCCAAATCTTCAAAACTCAATTCAAATGCAGTAGCATCATAAGTACCATCACTACCAT
* * * * * *
67748389 TAATCCCAAATTTTCATAACTCAGTTCAAATGCAATAGCATCTTAAGAACCATCA
1 TAATCCCAAATCTTCAAAACTCAATTCAAATGCAGTAGCATCATAAGTACCATCA
67748444 TGCAATGAAC
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 102 1.00
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (62 bp):
TAATCCCAAATCTTCAAAACTCAATTCAAATGCAGTAGCATCATAAGTACCATCACTACCAT
Found at i:67755902 original size:31 final size:31
Alignment explanation
Indices: 67755867--67755971 Score: 156
Period size: 31 Copynumber: 3.4 Consensus size: 31
67755857 TGGCTTAGGG
* * *
67755867 ACACGGGTGTGTATTACCACATGGCTTGCCC
1 ACACGGGCGTGTGTTACCACATGGCCTGCCC
67755898 ACACGGGCGTGTGTTACCACATGGCCTGCCC
1 ACACGGGCGTGTGTTACCACATGGCCTGCCC
* *
67755929 ACACGGGCGTGTGTTACCACACGTCCTGCCC
1 ACACGGGCGTGTGTTACCACATGGCCTGCCC
*
67755960 ACACGGACGTGT
1 ACACGGGCGTGT
67755972 CCCAAACCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.18, C:0.33, G:0.28, T:0.21
Consensus pattern (31 bp):
ACACGGGCGTGTGTTACCACATGGCCTGCCC
Found at i:67756655 original size:11 final size:11
Alignment explanation
Indices: 67756639--67756663 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
67756629 CACAAATAAA
67756639 CATACATTTTT
1 CATACATTTTT
67756650 CATACATTTTT
1 CATACATTTTT
67756661 CAT
1 CAT
67756664 TTTCAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.20, G:0.00, T:0.52
Consensus pattern (11 bp):
CATACATTTTT
Found at i:67758878 original size:16 final size:16
Alignment explanation
Indices: 67758859--67758897 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
67758849 AAAGAGAAGG
* *
67758859 GGAAAGAAAGAAGGAA
1 GGAAAAAAAGAAAGAA
67758875 GGAAAAAAAGAAAGAA
1 GGAAAAAAAGAAAGAA
67758891 GGGAAAA
1 -GGAAAA
67758898 GGGGAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAAGAA
Found at i:67760607 original size:45 final size:44
Alignment explanation
Indices: 67760557--67760667 Score: 118
Period size: 45 Copynumber: 2.5 Consensus size: 44
67760547 CGACTACTGT
*
67760557 TACTGTTACTATTACTGTTACAGATTC-GACACTTTAG-GTGCCGAA
1 TACTGTTACTGTTACTGTTAC-GATTCAG-CACTTT-GTGTGCCGAA
* * **
67760602 TACTGTTACCGTTACCGTTATCGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTA-CGATTCAGCACTTTGTGTGCCGAA
*
67760647 TATTGTTACTGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
67760668 TGTTCTAGAT
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
44 2 0.04
45 51 0.93
46 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.41
Consensus pattern (44 bp):
TACTGTTACTGTTACTGTTACGATTCAGCACTTTGTGTGCCGAA
Found at i:67760893 original size:18 final size:18
Alignment explanation
Indices: 67760847--67760893 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
67760837 CAACTGATTA
*
67760847 TTACTGAATAATTGTCTG
1 TTACTGAATAATTGACTG
*
67760865 TTACCGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
67760883 TTACTGGATAA
1 TTACTGAATAA
67760894 CCGATCAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:67760972 original size:18 final size:18
Alignment explanation
Indices: 67760910--67760973 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
67760900 AATTGATCGA
*
67760910 TACTGAATAACTGGTTAT
1 TACTGAATAACTGGTTGT
* * *
67760928 TATTGAATAATTGATTGT
1 TACTGAATAACTGGTTGT
* *
67760946 TACCGAATAAGTGGTTGT
1 TACTGAATAACTGGTTGT
*
67760964 TACTAAATAA
1 TACTGAATAA
67760974 ATAATTGTTC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (18 bp):
TACTGAATAACTGGTTGT
Found at i:67760973 original size:36 final size:36
Alignment explanation
Indices: 67760900--67760982 Score: 85
Period size: 36 Copynumber: 2.3 Consensus size: 36
67760890 ATAACCGATC
* * * * *
67760900 AATTGATCGATACTGAATAACTGGTTATTATTGAAT
1 AATTGATTGTTACCGAATAACTGGTTATTACTAAAT
* *
67760936 AATTGATTGTTACCGAATAAGTGGTTGTTACTAAAT
1 AATTGATTGTTACCGAATAACTGGTTATTACTAAAT
* *
67760972 AAATAATTGTT
1 AATTGATTGTT
67760983 CTGATTGTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.40
Consensus pattern (36 bp):
AATTGATTGTTACCGAATAACTGGTTATTACTAAAT
Found at i:67762124 original size:18 final size:20
Alignment explanation
Indices: 67762082--67762118 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67762072 ATATTTTATG
*
67762082 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
67762101 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
67762119 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:67764348 original size:46 final size:46
Alignment explanation
Indices: 67764281--67764599 Score: 417
Period size: 46 Copynumber: 7.0 Consensus size: 46
67764271 AGTGTGCTCT
*
67764281 CTGATATGAAATGTTTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
67764327 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
67764373 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGC-AC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
67764418 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
67764464 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
67764510 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
67764556 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
67764600 TCATGTCAAA
Statistics
Matches: 248, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
45 45 0.18
46 203 0.82
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:67764529 original size:137 final size:138
Alignment explanation
Indices: 67764281--67764622 Score: 440
Period size: 137 Copynumber: 2.5 Consensus size: 138
67764271 AGTGTGCTCT
* * * * ***
67764281 CTGATATGAAATGTTTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAG
* **
67764346 ACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAACGTGTAAGACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAGACCATGGTTGAAAGATACC
67764411 ATGGC-AC
131 ATGGCAAC
* *
67764418 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAG
* *
67764483 ACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAGACCATGGTTGAAAGATACC
67764548 ATGGCAAC
131 ATGGCAAC
* * * * * * * *
67764556 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCA--AAGATAAATA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAA-ATAAATA
67764618 AGACC
64 AGACC
67764623 GTGGATGGGA
Statistics
Matches: 178, Mismatches: 24, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
136 2 0.01
137 134 0.75
138 42 0.24
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.21
Consensus pattern (138 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAG
ACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAGACCATGGTTGAAAGATACC
ATGGCAAC
Found at i:67767480 original size:18 final size:18
Alignment explanation
Indices: 67767457--67767493 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
67767447 CAAATAAGAG
67767457 ACAGTATGTATGAGTTTA
1 ACAGTATGTATGAGTTTA
67767475 ACAGTATGTATGAGTTTA
1 ACAGTATGTATGAGTTTA
67767493 A
1 A
67767494 TTGGTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (18 bp):
ACAGTATGTATGAGTTTA
Found at i:67770952 original size:15 final size:18
Alignment explanation
Indices: 67770918--67770960 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 18
67770908 AGAAATTAGG
67770918 ATTGATTATATTTATAAT
1 ATTGATTATATTTATAAT
67770936 ATTGATT-T-TTT-TAAT
1 ATTGATTATATTTATAAT
*
67770951 ATTAATTATA
1 ATTGATTATA
67770961 AATTTAGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 10 0.45
16 4 0.18
17 1 0.05
18 7 0.32
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (18 bp):
ATTGATTATATTTATAAT
Found at i:67775702 original size:43 final size:43
Alignment explanation
Indices: 67775629--67775778 Score: 169
Period size: 43 Copynumber: 3.5 Consensus size: 43
67775619 TATCCTAAAT
* * * *
67775629 ATGGTCTTACATGTTATCAC-ATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACAATA-CAATGCCAATGTCCCAGAC
* * * * *
67775672 ATAGTCTTACACGTAATC-GATTAACAATGCCAATGTCCTAGAT
1 ATGGTCTTACACGTAATCACAAT-ACAATGCCAATGTCCCAGAC
67775715 ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
**
67775758 ATGGTCTTACATTTAATCACA
1 ATGGTCTTACACGTAATCACA
67775779 TCTCGGTAAC
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
43 85 0.97
44 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
Found at i:67776687 original size:17 final size:17
Alignment explanation
Indices: 67776665--67776697 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67776655 ATTTTATGTT
*
67776665 ATTTTATCATTTTAACA
1 ATTTTACCATTTTAACA
67776682 ATTTTACCATTTTAAC
1 ATTTTACCATTTTAAC
67776698 CATTAATAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTTTACCATTTTAACA
Found at i:67777526 original size:20 final size:20
Alignment explanation
Indices: 67777503--67777541 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
67777493 ATTAGAACTT
*
67777503 ATAACGCTTTTGGAGAATTC
1 ATAACACTTTTGGAGAATTC
67777523 ATAACACTTTTGGAGAATT
1 ATAACACTTTTGGAGAATT
67777542 TTGTATTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (20 bp):
ATAACACTTTTGGAGAATTC
Found at i:67781149 original size:18 final size:18
Alignment explanation
Indices: 67781128--67781165 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
67781118 CTTCTACCCT
67781128 TTCCCCTTTCCCTTCCCC
1 TTCCCCTTTCCCTTCCCC
*
67781146 TTCCCTTTTCCCTTCCCC
1 TTCCCCTTTCCCTTCCCC
67781164 TT
1 TT
67781166 GGATTGCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (18 bp):
TTCCCCTTTCCCTTCCCC
Done.