Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 206 of 253
Found at i:67781259 original size:25 final size:25
Alignment explanation
Indices: 67781225--67781274 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
67781215 CAGGTAAGGC
*
67781225 TCCTTCTTCTTCTTCCGTTTTTCAT
1 TCCTTCTTCTTCTTCCGTTCTTCAT
* *
67781250 TCCTTTTTCTTCTTCTGTTCTTCAT
1 TCCTTCTTCTTCTTCCGTTCTTCAT
67781275 CTTCTCTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.04, C:0.30, G:0.04, T:0.62
Consensus pattern (25 bp):
TCCTTCTTCTTCTTCCGTTCTTCAT
Found at i:67784509 original size:15 final size:15
Alignment explanation
Indices: 67784470--67784522 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 15
67784460 GAACATTTGG
67784470 AATTTAATTAGATAAAA
1 AATTT-ATTA-ATAAAA
67784487 AACTTTTATTAATAAAA
1 AA--TTTATTAATAAAA
*
67784504 AATTTATTTATAAATA
1 AATTTATTAATAAA-A
67784520 AAT
1 AAT
67784523 CATTGCAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 11 0.34
16 4 0.12
17 10 0.31
18 4 0.12
19 3 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (15 bp):
AATTTATTAATAAAA
Found at i:67784596 original size:22 final size:20
Alignment explanation
Indices: 67784553--67784591 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
67784543 TAATTTAAAA
67784553 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
67784573 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
67784592 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:67784715 original size:20 final size:20
Alignment explanation
Indices: 67784690--67784729 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
67784680 AATATTTTCC
*
67784690 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
67784710 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
67784730 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:67784735 original size:34 final size:35
Alignment explanation
Indices: 67784678--67784744 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
67784668 CAAACACTAG
*
67784678 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
67784713 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
67784745 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:67784736 original size:14 final size:14
Alignment explanation
Indices: 67784713--67784752 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
67784703 ACAGAAAAGT
*
67784713 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
67784727 AAATCATTTTACGG
1 AAAACATTTTACAG
67784741 AAAACATTTTAC
1 AAAACATTTTAC
67784753 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:67785928 original size:47 final size:47
Alignment explanation
Indices: 67785874--67785968 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
67785864 AATAAAAGAA
* *
67785874 GATAAAATTTTAAAAATAGATACAGTGAGAGAAAATAAGGAAATTTT
1 GATAAAATTTTAAAAATAAATAAAGTGAGAGAAAATAAGGAAATTTT
67785921 GATAAAATTTTAAAAATAAATAAAGTGAGAGAAAATAAGGAAATTTT
1 GATAAAATTTTAAAAATAAATAAAGTGAGAGAAAATAAGGAAATTTT
67785968 G
1 G
67785969 TTTTTAAGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.55, C:0.01, G:0.17, T:0.27
Consensus pattern (47 bp):
GATAAAATTTTAAAAATAAATAAAGTGAGAGAAAATAAGGAAATTTT
Found at i:67787497 original size:3 final size:3
Alignment explanation
Indices: 67787489--67787515 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
67787479 CTAATGCTTT
67787489 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
67787516 AACCTGCCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:67792579 original size:25 final size:26
Alignment explanation
Indices: 67792519--67792567 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
67792509 ATTTGTCTTA
*
67792519 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
67792543 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
67792568 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:67795871 original size:19 final size:19
Alignment explanation
Indices: 67795844--67795884 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
67795834 TGATTTATTC
*
67795844 TAAGCTTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
67795863 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
67795882 TAA
1 TAA
67795885 CTTTAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:67798437 original size:53 final size:52
Alignment explanation
Indices: 67798238--67798531 Score: 263
Period size: 53 Copynumber: 5.8 Consensus size: 52
67798228 CCATGGCAAC
** * * *
67798238 ATGTGATATGTGCTTTGGTATAAGACCATAGCTGGGCTATGGTATCGGTGTG
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCAGTGAG
* * *
67798290 ATGTGATATGTGCTCCCGTATAAGACCATAG-TAAGGCTATGACATCAGTGAG
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCT-GGGCTATGGCATCAGTGAG
*
67798342 ATGTGATTATGTGC-TCTCGTATAAGACCATAGCAGGGCTATGGCATCAGTGAG
1 ATGTGA-TATGTGCTTC-CGTATAAGACCATAGCTGGGCTATGGCATCAGTGAG
* * * *
67798395 ATGTGATTATGTGCTTCCGTATAAGACCATATCTGAGTTATGGCATCGGT-A-
1 ATGTGA-TATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCAGTGAG
** * * *
67798446 A--T-ATATGTGCTTCTATGTAAGACCATATCTGGGATATGGCATC----AG
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCAGTGAG
* * * *
67798491 -TGTGATACGTG-ATCCGTGTAAGACCATGGCTGGGCTATGGC
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGC
67798532 TTCGGTGTGT
Statistics
Matches: 204, Mismatches: 29, Indels: 24
0.79 0.11 0.09
Matches are distributed among these distances:
44 1 0.00
46 25 0.12
47 41 0.20
48 1 0.00
49 1 0.00
51 2 0.01
52 50 0.25
53 81 0.40
54 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (52 bp):
ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCAGTGAG
Found at i:67805795 original size:8 final size:8
Alignment explanation
Indices: 67805784--67805828 Score: 63
Period size: 8 Copynumber: 5.4 Consensus size: 8
67805774 TTTAAGAAAT
67805784 TAATATAA
1 TAATATAA
67805792 TAATATAA
1 TAATATAA
67805800 TAATATAATA
1 TAATAT-A-A
67805810 TAATATAA
1 TAATATAA
*
67805818 TAATAAAA
1 TAATATAA
67805826 TAA
1 TAA
67805829 AGCATATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
8 25 0.74
9 2 0.06
10 7 0.21
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
TAATATAA
Found at i:67805807 original size:13 final size:13
Alignment explanation
Indices: 67805784--67805827 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
67805774 TTTAAGAAAT
67805784 TAATATAATAATA
1 TAATATAATAATA
67805797 TAATA-ATATAATA
1 TAATATA-ATAATA
67805810 TAATATAATAATA
1 TAATATAATAATA
*
67805823 AAATA
1 TAATA
67805828 AAGCATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 1 0.04
13 26 0.93
14 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TAATATAATAATA
Found at i:67805990 original size:42 final size:42
Alignment explanation
Indices: 67805927--67806019 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
67805917 ATTTTGAGTC
*
67805927 CACACGGCCTGGCACATGGGCGTGTGATCAGACCATGTGAGA
1 CACACGGCCTGGCACACGGGCGTGTGATCAGACCATGTGAGA
*
67805969 CACACGGCCTGGCACACGGGCGTGTGGTCAGACCATGTGAGA
1 CACACGGCCTGGCACACGGGCGTGTGATCAGACCATGTGAGA
67806011 CACACGGCC
1 CACACGGCC
67806020 CTTACACAGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.23, C:0.30, G:0.33, T:0.14
Consensus pattern (42 bp):
CACACGGCCTGGCACACGGGCGTGTGATCAGACCATGTGAGA
Found at i:67808896 original size:54 final size:53
Alignment explanation
Indices: 67808813--67808974 Score: 182
Period size: 54 Copynumber: 3.0 Consensus size: 53
67808803 CCATCGCAAC
* *
67808813 ATGTGATATGTGATTTTCGTAAAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
* * * * *
67808866 ATGTGATAATGTGATTTCCGTATAATACCATAGCTTGGCTATGGCATTGGAGAG
1 ATGTGAT-ATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
* * * * * *
67808920 ATGTGATTATGTG-CTTCCGTATAAGACAATATCTGGGATATAGCATCAGTGTG
1 ATGTGA-TATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
67808973 AT
1 AT
67808975 ATGTGATCCG
Statistics
Matches: 89, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 38 0.43
54 50 0.56
55 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (53 bp):
ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
Found at i:67819028 original size:8 final size:8
Alignment explanation
Indices: 67819017--67819069 Score: 79
Period size: 8 Copynumber: 6.4 Consensus size: 8
67819007 TTTAAGAAAT
67819017 TAATATAA
1 TAATATAA
67819025 TAATATAA
1 TAATATAA
67819033 TAATATAA
1 TAATATAA
67819041 TAATATAATA
1 TAATAT-A-A
67819051 TAATATAA
1 TAATATAA
*
67819059 TAATAAAA
1 TAATATAA
67819067 TAA
1 TAA
67819070 AGTATATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
8 33 0.79
9 2 0.05
10 7 0.17
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
TAATATAA
Found at i:67819040 original size:13 final size:12
Alignment explanation
Indices: 67819024--67819082 Score: 66
Period size: 13 Copynumber: 4.7 Consensus size: 12
67819014 AATTAATATA
67819024 ATAATATAATAAT
1 ATAATA-AATAAT
67819037 ATAATAATATAAT
1 ATAATAA-ATAAT
67819050 ATAATATAATAAT
1 ATAATA-AATAAT
*
67819063 AAAATAAAGT-AT
1 ATAATAAA-TAAT
67819075 ATAATAAA
1 ATAATAAA
67819083 AGAAAGAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
12 12 0.29
13 28 0.68
14 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:67821655 original size:52 final size:53
Alignment explanation
Indices: 67821591--67821778 Score: 227
Period size: 53 Copynumber: 3.6 Consensus size: 53
67821581 CCATGGCAAC
** * * *
67821591 ATGTGA-TATGTGCTATCGTATAAGACCATAGCTGGGCTATGGTATCAGTGTG
1 ATGTGATTATGTGCTCCCGTATAAGACCATAGCAGGGCTATGGCATCAGTGAG
* * * **
67821643 ATGTGA-TATGTGCTCCCATATAAGACTATAGCAGGGTTATGGCATTGGTGAG
1 ATGTGATTATGTGCTCCCGTATAAGACCATAGCAGGGCTATGGCATCAGTGAG
*
67821695 ATGTGATTATGTGCTCCCGTATAAGACCATAACAGGGCTATGGCATCAGTGAG
1 ATGTGATTATGTGCTCCCGTATAAGACCATAGCAGGGCTATGGCATCAGTGAG
* * * *
67821748 ATATGATTATGTGCTTCCATATAAGATCATA
1 ATGTGATTATGTGCTCCCGTATAAGACCATA
67821779 TCTGAGATAT
Statistics
Matches: 115, Mismatches: 20, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
52 48 0.42
53 67 0.58
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (53 bp):
ATGTGATTATGTGCTCCCGTATAAGACCATAGCAGGGCTATGGCATCAGTGAG
Found at i:67821795 original size:53 final size:53
Alignment explanation
Indices: 67821634--67821797 Score: 159
Period size: 53 Copynumber: 3.1 Consensus size: 53
67821624 GGGCTATGGT
* * * * * * *
67821634 ATCAGTGTGATGTGA-TATGTGCTCCCATATAAGACTATAGCAGGGTTATGGC
1 ATCAGTGAGATATGATTATGTGCTCCCATATAAGACCATAACAGAGATATGAC
** * * * * *
67821686 ATTGGTGAGATGTGATTATGTGCTCCCGTATAAGACCATAACAGGGCTATGGC
1 ATCAGTGAGATATGATTATGTGCTCCCATATAAGACCATAACAGAGATATGAC
* * * *
67821739 ATCAGTGAGATATGATTATGTGCTTCCATATAAGATCATATCTGAGATATGAC
1 ATCAGTGAGATATGATTATGTGCTCCCATATAAGACCATAACAGAGATATGAC
67821792 ATCAGT
1 ATCAGT
67821798 AATATATGTG
Statistics
Matches: 93, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
52 12 0.13
53 81 0.87
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (53 bp):
ATCAGTGAGATATGATTATGTGCTCCCATATAAGACCATAACAGAGATATGAC
Found at i:67821852 original size:47 final size:46
Alignment explanation
Indices: 67821776--67821867 Score: 107
Period size: 47 Copynumber: 2.0 Consensus size: 46
67821766 ATATAAGATC
* *
67821776 ATATCTGAGATATGACATCAGTAATATATGTGCTTCTGTGTAAGACT
1 ATATCTGAGATATGACATCAGTAATATATGTG-ATCCGTGTAAGACT
* *
67821823 ATATCTG-GAATATGGCATCAGT-GTGATATGTGATCCGTGTAAGAC
1 ATATCTGAG-ATATGACATCAGTAAT-ATATGTGATCCGTGTAAGAC
67821868 CATGGCTGGG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 13 0.33
47 26 0.67
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (46 bp):
ATATCTGAGATATGACATCAGTAATATATGTGATCCGTGTAAGACT
Found at i:67822247 original size:18 final size:18
Alignment explanation
Indices: 67822224--67822280 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
67822214 ATACATTCAG
67822224 AGGATCAGATCTACATCA
1 AGGATCAGATCTACATCA
* *
67822242 AGGATCACA-CT--ATCC
1 AGGATCAGATCTACATCA
67822257 A-GATCAGATCTACATCA
1 AGGATCAGATCTACATCA
67822274 AGGATCA
1 AGGATCA
67822281 CACTATCCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
17 6 0.19
18 13 0.42
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.21
Consensus pattern (18 bp):
AGGATCAGATCTACATCA
Found at i:67822267 original size:32 final size:32
Alignment explanation
Indices: 67822226--67822292 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
67822216 ACATTCAGAG
67822226 GATCAGATCTACATCAAGGATCACACTATCCA
1 GATCAGATCTACATCAAGGATCACACTATCCA
67822258 GATCAGATCTACATCAAGGATCACACTATCCA
1 GATCAGATCTACATCAAGGATCACACTATCCA
67822290 GAT
1 GAT
67822293 TTACTCTGGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.22
Consensus pattern (32 bp):
GATCAGATCTACATCAAGGATCACACTATCCA
Found at i:67828979 original size:8 final size:8
Alignment explanation
Indices: 67828966--67829002 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
67828956 CTAGATCAGC
67828966 AAAAGCCG
1 AAAAGCCG
67828974 AAAAGCCG
1 AAAAGCCG
67828982 AAAAGCCG
1 AAAAGCCG
*
67828990 AAAAGCTG
1 AAAAGCCG
67828998 AAAAG
1 AAAAG
67829003 TTGGCATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.54, C:0.19, G:0.24, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:67834365 original size:14 final size:14
Alignment explanation
Indices: 67834348--67834378 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67834338 ATATAAATCA
*
67834348 ATTTCTATATATAT
1 ATTTATATATATAT
67834362 ATTTATATATATAT
1 ATTTATATATATAT
67834376 ATT
1 ATT
67834379 AGATGTCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTATATATATAT
Found at i:67840976 original size:41 final size:43
Alignment explanation
Indices: 67840882--67841039 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
67840872 CCAACATCCC
* * * * *
67840882 AGACGTGGTCTTACATGCCATCACATATCGATGCCACTGTCCC
1 AGACATGGTCTTACACGCAATCACATATCGATGCCAATGTCCT
* * *
67840925 AGATAGGGTCTTACACG-AATCAAATA-CGATGCCAATGTCCT
1 AGACATGGTCTTACACGCAATCACATATCGATGCCAATGTCCT
* * **
67840966 AGACATGGTCTTACACGTAATCACATATCGATGCAAACATCCT
1 AGACATGGTCTTACACGCAATCACATATCGATGCCAATGTCCT
* *
67841009 AGACGTGGTCTTACACG-AGAACACATATCGA
1 AGACATGGTCTTACACGCA-ATCACATATCGA
67841040 AAATCCTATG
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 28 0.29
42 16 0.17
43 52 0.54
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
AGACATGGTCTTACACGCAATCACATATCGATGCCAATGTCCT
Found at i:67851916 original size:24 final size:24
Alignment explanation
Indices: 67851882--67851958 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
67851872 TAGAAAAATG
* *
67851882 GGTTACAAGAAGATGAAACGTTAAA
1 GGTTA-AAGAAGATGAAAGGTGAAA
* *
67851907 GGTTAAAGAAGATGGAAGGTGGAA
1 GGTTAAAGAAGATGAAAGGTGAAA
*
67851931 GGTTAAGGAAGATGAAAGGTGAAA
1 GGTTAAAGAAGATGAAAGGTGAAA
67851955 GGTT
1 GGTT
67851959 GAACATCCAC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
24 40 0.89
25 5 0.11
ACGTcount: A:0.43, C:0.03, G:0.35, T:0.19
Consensus pattern (24 bp):
GGTTAAAGAAGATGAAAGGTGAAA
Found at i:67855971 original size:35 final size:35
Alignment explanation
Indices: 67855843--67855969 Score: 166
Period size: 35 Copynumber: 3.6 Consensus size: 35
67855833 CATGGAAAAG
*
67855843 TGTGAAATGTAGGTATGGTATTATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTATCCATACTGAGT
67855878 TGTGAAACGTAGGTATGGTATTATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTATCCATACTGAGT
** * * * *
67855913 TAAGAAACGTAAGTATGGCATT-TCCCAAACCGAGT
1 TGTGAAACGTAGGTATGGTATTAT-CCATACTGAGT
*
67855948 TGTGAAATGTAGGTATGGTATT
1 TGTGAAACGTAGGTATGGTATT
67855970 TCAATGAGGA
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
34 1 0.01
35 78 0.99
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATTATCCATACTGAGT
Found at i:67868033 original size:8 final size:8
Alignment explanation
Indices: 67868020--67868045 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
67868010 TAAAAGATGG
67868020 ATATGAGA
1 ATATGAGA
67868028 ATATGAGA
1 ATATGAGA
67868036 ATATGAGA
1 ATATGAGA
67868044 AT
1 AT
67868046 TTCTTTTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.27
Consensus pattern (8 bp):
ATATGAGA
Found at i:67868205 original size:24 final size:24
Alignment explanation
Indices: 67868157--67868223 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
67868147 AATGGGTTAT
* * *
67868157 AAGAATATGAAAGGTTAAAGGTTA
1 AAGAAGATGAAAGGTGAAAGCTTA
*
67868181 AAGAAGATGAAAGGTGGAAGCTTA
1 AAGAAGATGAAAGGTGAAAGCTTA
* * *
67868205 AGGGAGATGAAAGATGAAA
1 AAGAAGATGAAAGGTGAAA
67868224 AGTTGAACAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.49, C:0.01, G:0.31, T:0.18
Consensus pattern (24 bp):
AAGAAGATGAAAGGTGAAAGCTTA
Found at i:67871771 original size:16 final size:16
Alignment explanation
Indices: 67871750--67871784 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
67871740 GAGTTCATCA
*
67871750 ATTTTCTTCATTCTTC
1 ATTTTCCTCATTCTTC
67871766 ATTTTCCTCATTCTTC
1 ATTTTCCTCATTCTTC
67871782 ATT
1 ATT
67871785 GACAAATCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.26, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTTTCCTCATTCTTC
Found at i:67874055 original size:18 final size:16
Alignment explanation
Indices: 67874030--67874078 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
67874020 CCTAATATTT
67874030 TATAATTTAATCAATTAA
1 TATAATTTAATCAA-T-A
* *
67874048 TTTAATTTAACCCAATA
1 TATAATTTAA-TCAATA
67874065 TATAATTTAATCAA
1 TATAATTTAATCAA
67874079 CACTTTTAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 3 0.12
17 10 0.38
18 10 0.38
19 3 0.12
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (16 bp):
TATAATTTAATCAATA
Found at i:67877793 original size:20 final size:20
Alignment explanation
Indices: 67877768--67877805 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
67877758 CTCCTAATAT
67877768 TTTTGGTGCTTTGGTTTTAG
1 TTTTGGTGCTTTGGTTTTAG
*
67877788 TTTTGGTGTTTTGGTTTT
1 TTTTGGTGCTTTGGTTTT
67877806 CTTTCGATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.03, C:0.03, G:0.29, T:0.66
Consensus pattern (20 bp):
TTTTGGTGCTTTGGTTTTAG
Found at i:67886436 original size:6 final size:6
Alignment explanation
Indices: 67886364--67886439 Score: 107
Period size: 6 Copynumber: 12.5 Consensus size: 6
67886354 ACACGATCTT
* * * *
67886364 CCCTTT CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCTTTTC CCTTTT
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CC-CTTC CCCTTC
67886413 CCCTTC CCCTTC CCCTTC CCCTTC CCC
1 CCCTTC CCCTTC CCCTTC CCCTTC CCC
67886440 CATCATTTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
6 59 0.92
7 5 0.08
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (6 bp):
CCCTTC
Found at i:67886449 original size:43 final size:42
Alignment explanation
Indices: 67886362--67886449 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 42
67886352 CAACACGATC
* *
67886362 TTCCCTTTCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCTT
1 TTCCCTTTCCCTTCCCCTTCCCCTTCCCCTTCCCCATCCATT
67886404 TTCCCTTTTCCCTTCCCCTTCCCCTTCCCCTTCCCCCAT-CATT
1 TTCCC-TTTCCCTTCCCCTTCCCCTTCCCCTT-CCCCATCCATT
67886447 TTC
1 TTC
67886450 GATAAGAGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
42 5 0.12
43 32 0.76
44 5 0.12
ACGTcount: A:0.02, C:0.57, G:0.00, T:0.41
Consensus pattern (42 bp):
TTCCCTTTCCCTTCCCCTTCCCCTTCCCCTTCCCCATCCATT
Found at i:67892627 original size:22 final size:22
Alignment explanation
Indices: 67892602--67892647 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
67892592 CCGTTTAATG
67892602 AGTTAGTGGATAGTTATGGACA
1 AGTTAGTGGATAGTTATGGACA
67892624 AGTTAGTGGATAGTTATGGACA
1 AGTTAGTGGATAGTTATGGACA
67892646 AG
1 AG
67892648 GTTTTATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.33, T:0.30
Consensus pattern (22 bp):
AGTTAGTGGATAGTTATGGACA
Found at i:67894492 original size:412 final size:412
Alignment explanation
Indices: 67893728--67894553 Score: 1553
Period size: 412 Copynumber: 2.0 Consensus size: 412
67893718 GTATCCGATG
67893728 TAATTCTAGATGATTCAACGGGTAAGAAAAGGAAATGAAAGAGGTAAGTATGCAAATAGAATGAA
1 TAATTCTAGATGATTCAACGGGTAAGAAAAGGAAATGAAAGAGGTAAGTATGCAAATAGAATGAA
*
67893793 TCATGATCTTATGAAAGAATTTATGAGCTAAATGATGTATTTACATATAGAAATCTACTTATCTT
66 TCATGATCTTATGAAAGAATTTACGAGCTAAATGATGTATTTACATATAGAAATCTACTTATCTT
67893858 ATGGTTGAATTCATTTGTATCATGAACAAGTGTACTAACTTGTGAGTTTGATTATGTTTTATAGG
131 ATGGTTGAATTCATTTGTATCATGAACAAGTGTACTAACTTGTGAGTTTGATTATGTTTTATAGG
* *
67893923 CTTATACTATGTTTATTGCATCGGTAATATTTTATGCTTAATCTATGAATTATATTAATGAAATG
196 CTTATACTATGTTTATGGCATCGGTAATATTTTATGCTTAATCTATAAATTATATTAATGAAATG
*
67893988 GTAAGTTATATTTAAGTTTATACTAGCTTACTAAGCACCCGTTGCTTATGTAGTTACTTTCTTTT
261 GTAAGTTATATTTAAGTTTATACTAGCTTACTAAGCACCCGCTGCTTATGTAGTTACTTTCTTTT
* *
67894053 GTTTTATAGATTATCGGGAGCTTGATCAGTTAGAAGCTCGTCGAAGACCTATCACACTAACCAGC
326 GTTTTATAGATTATCGGGAGCTTGATCAATTAGAAGCTCGTCGAAGACCTATCACACTAACCAGA
67894118 AATTATTTCGATAGATTTTGTA
391 AATTATTTCGATAGATTTTGTA
* *
67894140 TAATTCTAGTTGATTCAACGGGTAAGAAAAGGAAATGAAAGAGGTAAGTATGCAAATGGAATGAA
1 TAATTCTAGATGATTCAACGGGTAAGAAAAGGAAATGAAAGAGGTAAGTATGCAAATAGAATGAA
67894205 TCATGATCTTATGAAAGAATTTACGAGCTAAATGATGTATTTACATATAGAAATCTACTTATCTT
66 TCATGATCTTATGAAAGAATTTACGAGCTAAATGATGTATTTACATATAGAAATCTACTTATCTT
67894270 ATGGTTGAATTCATTTGTATCATGAACAAGTGTACTAACTTGTGAGTTTGATTATGTTTTATAGG
131 ATGGTTGAATTCATTTGTATCATGAACAAGTGTACTAACTTGTGAGTTTGATTATGTTTTATAGG
* *
67894335 CTTATACTATGTTTATGGCATTGGTAATGTTTTATGCTTAATCTATAAATTATATTAATGAAATG
196 CTTATACTATGTTTATGGCATCGGTAATATTTTATGCTTAATCTATAAATTATATTAATGAAATG
67894400 GTAAGTTATATTTAAGTTTATACTAGCTTACTAAGCACCCGCTGCTTATGTAGTTACTTTCTTTT
261 GTAAGTTATATTTAAGTTTATACTAGCTTACTAAGCACCCGCTGCTTATGTAGTTACTTTCTTTT
*
67894465 GTTTTATAGATTATCGGGAGCTTGATCAATTGGAAGCTCGTCGAAGACCTATCACACTAACCAGA
326 GTTTTATAGATTATCGGGAGCTTGATCAATTAGAAGCTCGTCGAAGACCTATCACACTAACCAGA
67894530 AATTATTTCGATAGATTTTGTA
391 AATTATTTCGATAGATTTTGTA
67894552 TA
1 TA
67894554 TTTTGGCTGA
Statistics
Matches: 403, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
412 403 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (412 bp):
TAATTCTAGATGATTCAACGGGTAAGAAAAGGAAATGAAAGAGGTAAGTATGCAAATAGAATGAA
TCATGATCTTATGAAAGAATTTACGAGCTAAATGATGTATTTACATATAGAAATCTACTTATCTT
ATGGTTGAATTCATTTGTATCATGAACAAGTGTACTAACTTGTGAGTTTGATTATGTTTTATAGG
CTTATACTATGTTTATGGCATCGGTAATATTTTATGCTTAATCTATAAATTATATTAATGAAATG
GTAAGTTATATTTAAGTTTATACTAGCTTACTAAGCACCCGCTGCTTATGTAGTTACTTTCTTTT
GTTTTATAGATTATCGGGAGCTTGATCAATTAGAAGCTCGTCGAAGACCTATCACACTAACCAGA
AATTATTTCGATAGATTTTGTA
Found at i:67897270 original size:28 final size:29
Alignment explanation
Indices: 67897232--67897300 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
67897222 AAAATATTAA
*
67897232 AAAATAGTTTTTAAT-ATTTTT-TACTTTT
1 AAAATAATTTTTAATGATTTTTAT-CTTTT
* *
67897260 GAAATAA-TTTTAATGATTTTTATTTTTT
1 AAAATAATTTTTAATGATTTTTATCTTTT
67897288 AAAATAATTTTTA
1 AAAATAATTTTTA
67897301 TTTTGAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
27 7 0.21
28 21 0.62
29 6 0.18
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.58
Consensus pattern (29 bp):
AAAATAATTTTTAATGATTTTTATCTTTT
Found at i:67898142 original size:53 final size:52
Alignment explanation
Indices: 67898033--67898135 Score: 161
Period size: 53 Copynumber: 2.0 Consensus size: 52
67898023 AATGCTTGAA
* * *
67898033 ATTTGTCCTTCTATGGTTGGTGCTAGTAATTAATTTGTTTTCAAACTTCATC
1 ATTTGTCCTCCTAAGGTTGGTGCTAGCAATTAATTTGTTTTCAAACTTCATC
*
67898085 ATTTGTTCTCCTAAGGTTGAGTGCTAGCAATTAATTTGTTTTCAAACTTCA
1 ATTTGTCCTCCTAAGGTTG-GTGCTAGCAATTAATTTGTTTTCAAACTTCA
67898136 CTATTTGCTT
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 16 0.35
53 30 0.65
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.46
Consensus pattern (52 bp):
ATTTGTCCTCCTAAGGTTGGTGCTAGCAATTAATTTGTTTTCAAACTTCATC
Found at i:67899417 original size:15 final size:15
Alignment explanation
Indices: 67899397--67899453 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
67899387 GCATAATATT
67899397 AATATTTTAATAATA
1 AATATTTTAATAATA
*
67899412 AATATTTATTAAAATTATA
1 AATA-TT-TT--AATAATA
*
67899431 AATATATTAATAATA
1 AATATTTTAATAATA
*
67899446 AATGTTTT
1 AATATTTT
67899454 GTAGTACAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:67901001 original size:27 final size:28
Alignment explanation
Indices: 67900948--67901001 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
67900938 CGTGTATAGT
*
67900948 AAAATATTAAAATATAAATATTGAAAAA
1 AAAATATTAAAATATAAATATTCAAAAA
*
67900976 AAAATA-T-AAATATTAAATTTTCAAAA
1 AAAATATTAAAATA-TAAATATTCAAAA
67901002 TTGATTGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 5 0.22
27 12 0.52
28 6 0.26
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (28 bp):
AAAATATTAAAATATAAATATTCAAAAA
Found at i:67914834 original size:14 final size:14
Alignment explanation
Indices: 67914815--67914842 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
67914805 GAGAAGAAAG
67914815 AAAGAAAAGAAAAT
1 AAAGAAAAGAAAAT
67914829 AAAGAAAAGAAAAT
1 AAAGAAAAGAAAAT
67914843 GTGATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (14 bp):
AAAGAAAAGAAAAT
Found at i:67917419 original size:6 final size:6
Alignment explanation
Indices: 67917408--67917475 Score: 68
Period size: 6 Copynumber: 11.7 Consensus size: 6
67917398 CCCTACTCAG
* * * * *
67917408 CTTCTC CTTCTC CTTCTC CTTCTT CTTCTT CTTCTT C-TCTT CTT-TT
1 CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC
*
67917454 CTTCTC CTTCTC TTTCTC CTTC
1 CTTCTC CTTCTC CTTCTC CTTC
67917476 ACTCACGGCC
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
5 10 0.18
6 46 0.82
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (6 bp):
CTTCTC
Found at i:67917425 original size:12 final size:12
Alignment explanation
Indices: 67917408--67917475 Score: 79
Period size: 12 Copynumber: 5.8 Consensus size: 12
67917398 CCCTACTCAG
*
67917408 CTTCTCCTTCTC
1 CTTCTCCTTCTT
67917420 CTTCTCCTTCTT
1 CTTCTCCTTCTT
*
67917432 CTTCTTCTTCTT
1 CTTCTCCTTCTT
*
67917444 C-TCTTCTT-TT
1 CTTCTCCTTCTT
67917454 CTTCTCCTTC-T
1 CTTCTCCTTCTT
67917465 CTTTCTCCTTC
1 C-TTCTCCTTC
67917476 ACTCACGGCC
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
10 3 0.06
11 15 0.30
12 32 0.64
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (12 bp):
CTTCTCCTTCTT
Found at i:67917434 original size:3 final size:3
Alignment explanation
Indices: 67917408--67917464 Score: 64
Period size: 3 Copynumber: 19.7 Consensus size: 3
67917398 CCCTACTCAG
* * *
67917408 CTT CTC CTT CTC CTT CTC CTT CTT CTT CTT CTT CTT C-T CTT CTT -TT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
67917454 CTT CTC CTT CT
1 CTT CTT CTT CT
67917465 CTTTCTCCTT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
2 4 0.09
3 40 0.91
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (3 bp):
CTT
Found at i:67922683 original size:13 final size:13
Alignment explanation
Indices: 67922649--67922693 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
67922639 AATACTTTTA
67922649 AAAAGTGTTGTGG
1 AAAAGTGTTGTGG
67922662 AAATA-TGTTGTGG
1 AAA-AGTGTTGTGG
* *
67922675 AAAAGTGTTTTTG
1 AAAAGTGTTGTGG
67922688 AAAAGT
1 AAAAGT
67922694 TTAGTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 1 0.04
13 26 0.93
14 1 0.04
ACGTcount: A:0.36, C:0.00, G:0.29, T:0.36
Consensus pattern (13 bp):
AAAAGTGTTGTGG
Found at i:67926667 original size:13 final size:13
Alignment explanation
Indices: 67926649--67926673 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67926639 AATTTTTTAA
67926649 ATATATTATTTTT
1 ATATATTATTTTT
67926662 ATATATTATTTT
1 ATATATTATTTT
67926674 ATTTTTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATATATTATTTTT
Found at i:67926677 original size:18 final size:17
Alignment explanation
Indices: 67926640--67926691 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
67926630 TTGGTACATA
*
67926640 ATTTTTTA-AATATATT
1 ATTTTTTATAATATTTT
*
67926656 ATTTTTATATATTATTTT
1 ATTTTT-TATAATATTTT
67926674 ATTTTTTATAATATTTT
1 ATTTTTTATAATATTTT
67926691 A
1 A
67926692 GTAAAAACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
16 6 0.19
17 13 0.42
18 12 0.39
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTTTTATAATATTTT
Found at i:67930782 original size:14 final size:16
Alignment explanation
Indices: 67930756--67930789 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
67930746 ATTGTTTGGA
67930756 TATTGTATAATTTT-T
1 TATTGTATAATTTTGT
67930771 TATTGT-TAATTTTGT
1 TATTGTATAATTTTGT
67930786 TATT
1 TATT
67930790 ATTTTAGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.68
Consensus pattern (16 bp):
TATTGTATAATTTTGT
Found at i:67936418 original size:39 final size:40
Alignment explanation
Indices: 67936348--67936447 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
67936338 TATTGATGAA
* *
67936348 CCTGATTGCACTCTGGTGTCCCTAATTGCACTTTCGTGCC
1 CCTGATTGCATTCAGGTGTCCCTAATTGCACTTTCGTGCC
* *
67936388 CTTGATTGCATTCAGGTG-CCCTGATTGCACTTTCGTGCC
1 CCTGATTGCATTCAGGTGTCCCTAATTGCACTTTCGTGCC
*
67936427 CCTGTTTGCACTT-AGGTGTCC
1 CCTGATTGCA-TTCAGGTGTCC
67936448 ATATATGAAC
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 33 0.63
40 19 0.37
ACGTcount: A:0.12, C:0.30, G:0.22, T:0.36
Consensus pattern (40 bp):
CCTGATTGCATTCAGGTGTCCCTAATTGCACTTTCGTGCC
Found at i:67936439 original size:20 final size:20
Alignment explanation
Indices: 67936348--67936439 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
67936338 TATTGATGAA
* * *
67936348 CCTGATTGCACTCTGGTGTC
1 CCTGATTGCACTTTCGTGCC
*
67936368 CCTAATTGCACTTTCGTGCC
1 CCTGATTGCACTTTCGTGCC
*
67936388 CTTGATTGCA--TTCAGGTG-C
1 CCTGATTGCACTTTC--GTGCC
67936407 CCTGATTGCACTTTCGTGCC
1 CCTGATTGCACTTTCGTGCC
*
67936427 CCTGTTTGCACTT
1 CCTGATTGCACTT
67936440 AGGTGTCCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
18 3 0.05
19 13 0.22
20 40 0.68
21 3 0.05
ACGTcount: A:0.12, C:0.30, G:0.21, T:0.37
Consensus pattern (20 bp):
CCTGATTGCACTTTCGTGCC
Found at i:67952739 original size:20 final size:20
Alignment explanation
Indices: 67952714--67952752 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67952704 AGGGACTAAA
*
67952714 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
*
67952734 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTATAAAATTT
67952753 TACGAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:67965931 original size:46 final size:46
Alignment explanation
Indices: 67965795--67966014 Score: 157
Period size: 46 Copynumber: 4.7 Consensus size: 46
67965785 TTCGTGTGTG
** **
67965795 AGCTAGTGTAAGACATGTCTGGGACATGCATTGGCGA-C-A-TTATAA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGC-ATCGAGACAT-A
* * * * *
67965840 GAGCCAGTGTAAGACCTTGTCTGGGACGTGGCATCAGCATTGAGACGA-G
1 -AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAGAC-ATA
* * * *
67965889 GGCTAGTGTAAGACATGTTTGGGATATGCATCAGCCTCGAGACATA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACATA
* *
67965935 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-TACGAGATGAT-
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAT-CGAGA-CATA
67965981 AG-TCAGTGTAAGACCATGTCTGGGACATGGCATC
1 AGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
67966015 GACTTGAGAT
Statistics
Matches: 139, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.02
46 73 0.53
47 39 0.28
48 22 0.16
49 1 0.01
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACATA
Found at i:67966024 original size:47 final size:47
Alignment explanation
Indices: 67965844--67966060 Score: 164
Period size: 47 Copynumber: 4.6 Consensus size: 47
67965834 TTATAAGAGC
* * * * **
67965844 CAGTGTAAGACCTTGTCTGGGACGTGGCATC-AGCATTGAGACGA-GGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TCGAGATGATAAG
* * * *
67965891 CTAGTGTAAGA-CATGTTTGGGATAT-GCATCAGCCTCGAGA-CATAAG
1 C-AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGATGATAAG
*
67965937 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGAT-AG
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGATGATAAG
* *
67965983 TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAT-ATGAG
1 -CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATGATAAG
* *
67966030 CCAGTGTAAGACCGTGTCTAGGACATGGCAT
1 -CAGTGTAAGACCATGTCTGGGACATGGCAT
67966061 AAACACCTTA
Statistics
Matches: 142, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
45 4 0.03
46 57 0.40
47 64 0.45
48 17 0.12
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATGATAAG
Found at i:67969824 original size:46 final size:46
Alignment explanation
Indices: 67969757--67970060 Score: 293
Period size: 46 Copynumber: 6.6 Consensus size: 46
67969747 GCCCATAAGC
67969757 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
*
67969803 GAACTCGGGCTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
* * * *
67969849 GAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-CTC--TT
1 GAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCCACAAGT
* * * * *
67969896 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
* * *
67969942 GAACTCGGACTCAACTCAACGAGCTCGGACCTAGTT-ACAT-CTC---T
1 GAACTCGGACTCAACTCAACGAGCTCGG-GC--GTTCGCATCCACAAGT
* ** * *
67969986 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
*
67970033 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGCTCGG
67970061 ATGCCCAAAT
Statistics
Matches: 212, Mismatches: 28, Indels: 36
0.77 0.10 0.13
Matches are distributed among these distances:
42 4 0.02
43 6 0.03
44 5 0.02
45 26 0.12
46 127 0.60
47 29 0.14
48 4 0.02
49 5 0.02
50 3 0.01
51 3 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
Found at i:67970019 original size:91 final size:92
Alignment explanation
Indices: 67969749--67970061 Score: 413
Period size: 91 Copynumber: 3.4 Consensus size: 92
67969739 TGTAACCCGC
* * *
67969749 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-G-C--GTTCGCATC-CACAAGTGAACTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCCTAGTT-ACATCTCTC----GAACTC
* * * *
67969809 GGGCTCAACTCAACGAGCTCGGGCGTTCGCAT
61 GGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
67969841 CCACAAGTGAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTTGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-GCCTAGTTACATCTCTCGAACTCGGAC
*
67969906 TCAACTCAACGAGTTTGGACATTCGCAT
65 TCAACTCAACGAGTTCGGACATTCGCAT
67969934 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CCTAGTTACATCTCTCGAACTCGGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCCTAGTTACATCTCTCGAACTCGGACT
*
67969998 CAACTCAACGAGTTCGAACATTCGCAT
66 CAACTCAACGAGTTCGGACATTCGCAT
*
67970025 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
67970062 TGCCCAAATA
Statistics
Matches: 198, Mismatches: 17, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
91 87 0.44
92 33 0.17
93 68 0.34
94 1 0.01
95 1 0.01
96 4 0.02
97 4 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCCTAGTTACATCTCTCGAACTCGGACT
CAACTCAACGAGTTCGGACATTCGCAT
Found at i:67990693 original size:13 final size:13
Alignment explanation
Indices: 67990675--67990700 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67990665 TATTTATCAT
67990675 TGTAAATTTTATA
1 TGTAAATTTTATA
67990688 TGTAAATTTTATA
1 TGTAAATTTTATA
67990701 AAAGATTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
TGTAAATTTTATA
Found at i:68003153 original size:67 final size:67
Alignment explanation
Indices: 68003024--68003263 Score: 214
Period size: 67 Copynumber: 3.6 Consensus size: 67
68003014 AATAGCCCAA
* * * * * *
68003024 TACACATCATACCCCATGTTTAATGTCCTAGTGGACTCTCTATGTTGCCCTAGCCGAGCTATGGA
1 TACACATCATACCCCATGTTTAATATCCTAGTGGACTCTCTATGCTGCCATAACCAAACTATGGA
*
68003089 GT
66 CT
* * *
68003091 TACACATCATACCCCATGTTTGATATCTTAGTGGACTCTCTATGCTGCCATAACCAAACTATGGT
1 TACACATCATACCCCATGTTTAATATCCTAGTGGACTCTCTATGCTGCCATAACCAAACTATGGA
68003156 CT
66 CT
* * * * * * * ** * * * *
68003158 TAAAAATCATATCCCATGTTTAATGTCCTCGCGGACTATCTATATTGCTATAATCAAGCTATGGT
1 TACACATCATACCCCATGTTTAATATCCTAGTGGACTCTCTATGCTGCCATAACCAAACTATGGA
68003223 CT
66 CT
* * *
68003225 TACATATCATACCCTATAG-TTAATGTCCTCA-TGGACTCT
1 TACACATCATACCCCAT-GTTTAATATCCT-AGTGGACTCT
68003264 ATTAGTTGCT
Statistics
Matches: 140, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
67 139 0.99
68 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.34
Consensus pattern (67 bp):
TACACATCATACCCCATGTTTAATATCCTAGTGGACTCTCTATGCTGCCATAACCAAACTATGGA
CT
Found at i:68003273 original size:67 final size:66
Alignment explanation
Indices: 68003140--68003289 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 66
68003130 CTATGCTGCC
* *
68003140 ATAACCAAACTATGGTCTTAAAAATCATATCCCATGTTTAATGTCCTCGCGGACTATCTATATTG
1 ATAACCAAGCTATGGTCTTAAAAATCATATCCCATGTTTAATGTCCTCACGGAC-ATCTATATTG
68003205 CT
65 CT
* * * *
68003207 ATAATCAAGCTATGGTCTTACATATCATA-CCCTATAG-TTAATGTCCTCATGGAC-TCTATTAG
1 ATAACCAAGCTATGGTCTTAAAAATCATATCCC-AT-GTTTAATGTCCTCACGGACATCTA-TA-
68003269 TTGCT
62 TTGCT
*
68003274 ATAGCCAAGCTATGGT
1 ATAACCAAGCTATGGT
68003290 TTTTCACATT
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
65 4 0.06
66 5 0.07
67 61 0.86
68 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (66 bp):
ATAACCAAGCTATGGTCTTAAAAATCATATCCCATGTTTAATGTCCTCACGGACATCTATATTGC
T
Found at i:68009662 original size:44 final size:44
Alignment explanation
Indices: 68009565--68009662 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 44
68009555 TGTCGGAGGT
* * *
68009565 AGGTCTTATACTGACACGCTACAAGCTAACGCCATGTCCCAGAC
1 AGGTCTTACATTGACACGCTACAAGCTAACGCCATGTCCCAAAC
* * *
68009609 ATGTCTTACATTGACACGCTACAAGCTGACGCCATGTCCCAAAT
1 AGGTCTTACATTGACACGCTACAAGCTAACGCCATGTCCCAAAC
*
68009653 AGGTTTTACA
1 AGGTCTTACA
68009663 CTAGCTTGAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (44 bp):
AGGTCTTACATTGACACGCTACAAGCTAACGCCATGTCCCAAAC
Found at i:68009787 original size:48 final size:48
Alignment explanation
Indices: 68009674--68009840 Score: 211
Period size: 46 Copynumber: 3.6 Consensus size: 48
68009664 TAGCTTGAAT
* *
68009674 CATGTCCCAGACATGTCTTACACTAGCTCTCG---TCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-GATATCTCGAGGCTGATG
* *
68009720 CATGTCCCAGACATGTCTTACACTGGC-CTAGATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-GATATCTCGAGGCTGATG
* *
68009768 CATGTCCCAGACATGTCTTACACTAGCTCTCATAT-T-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTGATATCTCGAGGCTGATG
*
68009814 CATGTCCCATACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
68009841 ACACATATCA
Statistics
Matches: 107, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
45 3 0.03
46 60 0.56
47 1 0.01
48 41 0.38
49 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTGATATCTCGAGGCTGATG
Found at i:68009849 original size:94 final size:94
Alignment explanation
Indices: 68009674--68009849 Score: 257
Period size: 94 Copynumber: 1.9 Consensus size: 94
68009664 TAGCTTGAAT
* *
68009674 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCTGATGCATGTCCCAGACATGTCTT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATATCAATGCTGATGCATGTCCCAGACATGTCTT
* *
68009739 ACACTGGCCTAGATATCTCGAGGCCGATG
66 ACACTAGCCTACATATCTCGAGGCCGATG
** *
68009768 CATGTCCCAGACATGTCTTACACTAGCTCTCATAT-TGTGGCTGATGCATGTCCCATACATGTCT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATATCAAT-GCTGATGCATGTCCCAGACATGTCT
68009832 TACACTAGCAC-ACATATC
65 TACACTAGC-CTACATATC
68009850 ACCCATTATC
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
93 1 0.01
94 71 0.97
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATATCAATGCTGATGCATGTCCCAGACATGTCTT
ACACTAGCCTACATATCTCGAGGCCGATG
Found at i:68018568 original size:26 final size:27
Alignment explanation
Indices: 68018508--68018578 Score: 108
Period size: 30 Copynumber: 2.6 Consensus size: 27
68018498 TTTAAGAGAA
68018508 AAATTAATTAAATTAGGGTTGAGGGTT
1 AAATTAATTAAATTAGGGTTGAGGGTT
68018535 AAAAAATTAATTAAATTAGGGTTGAGGGTT
1 ---AAATTAATTAAATTAGGGTTGAGGGTT
68018565 -AATTAATTAAATTA
1 AAATTAATTAAATTA
68018579 ACTATTAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
26 14 0.34
30 27 0.66
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.37
Consensus pattern (27 bp):
AAATTAATTAAATTAGGGTTGAGGGTT
Found at i:68018574 original size:30 final size:30
Alignment explanation
Indices: 68018506--68018566 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
68018496 TTTTTAAGAG
68018506 AAAAATTAATTAAATTAGGGTTGAGGGTTA
1 AAAAATTAATTAAATTAGGGTTGAGGGTTA
68018536 AAAAATTAATTAAATTAGGGTTGAGGGTTA
1 AAAAATTAATTAAATTAGGGTTGAGGGTTA
68018566 A
1 A
68018567 TTAATTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.44, C:0.00, G:0.23, T:0.33
Consensus pattern (30 bp):
AAAAATTAATTAAATTAGGGTTGAGGGTTA
Found at i:68018578 original size:56 final size:55
Alignment explanation
Indices: 68018533--68018708 Score: 300
Period size: 55 Copynumber: 3.2 Consensus size: 55
68018523 GGGTTGAGGG
*
68018533 TTAAAAAATTAATTAAATTAGGGTTGAGGGTTAATTAATTAAATTAACTATTAAT
1 TTAAAAAATTAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAAT
*
68018588 TTAAAAAATCT-ATTAAATTAGGGTTTAGGGTTTATTAATTAAATTAACTATTAAT
1 TTAAAAAAT-TAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAAT
*
68018643 TTAAAAGAATCAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAAT
1 TTAAAA-AATTAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAAT
68018699 TTAAAAAATT
1 TTAAAAAATT
68018709 TAATATCTAA
Statistics
Matches: 113, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
55 60 0.53
56 53 0.47
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.41
Consensus pattern (55 bp):
TTAAAAAATTAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAAT
Found at i:68018889 original size:125 final size:126
Alignment explanation
Indices: 68018741--68018997 Score: 356
Period size: 125 Copynumber: 2.0 Consensus size: 126
68018731 TTTTTATTGT
* * * * *
68018741 AGTAGTATTAGAGAAAATAATTTTGAGAAGACTTTTCTGAATAAATAGTGTCAAAAACGGTTCAA
1 AGTAGTATTAGAAAAAATAATTTTGAAAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTCAA
* * * * *
68018806 GCAGGATGCACTATCAGTAAAATTATGG-AAAAAGCTCTCACGTGGACGCTCTTTTGCTAC
66 GCAGGATGCACTACCAGCAAAATTACGGAAAAAAGCTCCCACGTGGACACTCTTTTGCTAC
* *
68018866 AGTAGTATCT-GAAAAAATAATTTTGAAAAGACATTTCTGAACAAATAGTGTCCAAAACGCTTTA
1 AGTAGTAT-TAGAAAAAATAATTTTGAAAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTCA
* * *
68018930 AGCAGTATGCACTGCCAGCAAAATTACGGAAAAAAGCTCCCACGTGGGCACTCTTTTGCTAC
65 AGCAGGATGCACTACCAGCAAAATTACGGAAAAAAGCTCCCACGTGGACACTCTTTTGCTAC
68018992 AGTAGT
1 AGTAGT
68018998 TACTATTTGA
Statistics
Matches: 115, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
125 79 0.69
126 36 0.31
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (126 bp):
AGTAGTATTAGAAAAAATAATTTTGAAAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTCAA
GCAGGATGCACTACCAGCAAAATTACGGAAAAAAGCTCCCACGTGGACACTCTTTTGCTAC
Found at i:68022365 original size:21 final size:20
Alignment explanation
Indices: 68022321--68022365 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
68022311 GCTTCCAGCA
*
68022321 AGGGTTGTGGTTGCTCCGGT
1 AGGGTTGTGGTTGCTCCGGC
* *
68022341 AGGGATTGTGGTTTCTCTGGC
1 AGGG-TTGTGGTTGCTCCGGC
68022362 AGGG
1 AGGG
68022366 GATCTGGCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.09, C:0.13, G:0.44, T:0.33
Consensus pattern (20 bp):
AGGGTTGTGGTTGCTCCGGC
Found at i:68024435 original size:21 final size:22
Alignment explanation
Indices: 68024394--68024436 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
68024384 AGCTTTTTTC
*
68024394 CAAAAATTAAAGAGAGCTTTGA
1 CAAAAATTAAAGAGAGATTTGA
68024416 CAAAAATTGAAAGA-A-ATTTGA
1 CAAAAATT-AAAGAGAGATTTGA
68024437 GAGAATTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 9 0.47
23 5 0.26
ACGTcount: A:0.53, C:0.07, G:0.16, T:0.23
Consensus pattern (22 bp):
CAAAAATTAAAGAGAGATTTGA
Found at i:68024459 original size:9 final size:10
Alignment explanation
Indices: 68024430--68024472 Score: 59
Period size: 11 Copynumber: 4.0 Consensus size: 10
68024420 AATTGAAAGA
68024430 AATTTGAGAG
1 AATTTGAGAG
68024440 AATTTGGAGAG
1 AATTT-GAGAG
68024451 AATTTAGAGAG
1 AATTT-GAGAG
68024462 AATTATGAGAG
1 AATT-TGAGAG
68024473 GACTATTGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 5 0.17
11 24 0.80
12 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (10 bp):
AATTTGAGAG
Found at i:68033990 original size:20 final size:21
Alignment explanation
Indices: 68033945--68033991 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
68033935 ATAATTAAAG
* * *
68033945 TGTTAAAAAATGTAATTTTTT
1 TGTTATAAAATATAATTTTGT
68033966 TGTTATAAAATATAA-TTTGT
1 TGTTATAAAATATAATTTTGT
68033986 TGTTAT
1 TGTTAT
68033992 TATTGTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (21 bp):
TGTTATAAAATATAATTTTGT
Found at i:68034387 original size:31 final size:30
Alignment explanation
Indices: 68034345--68034405 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
68034335 AATTATGAGT
**
68034345 TAAAAAATTATATTAACTTTTAAAATAACA
1 TAAAAAATTATACCAACTTTTAAAATAACA
*
68034375 TAAAAATATTATACCGACTTTTAAAATAACA
1 TAAAAA-ATTATACCAACTTTTAAAATAACA
68034406 ATACATACAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 6 0.22
31 21 0.78
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.34
Consensus pattern (30 bp):
TAAAAAATTATACCAACTTTTAAAATAACA
Found at i:68036733 original size:16 final size:17
Alignment explanation
Indices: 68036701--68036734 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
68036691 AATAATTTTA
68036701 TTTTATCTAAAATAAAT
1 TTTTATCTAAAATAAAT
*
68036718 TTTTATTTAAAA-AAAT
1 TTTTATCTAAAATAAAT
68036734 T
1 T
68036735 AATTCATCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTTATCTAAAATAAAT
Found at i:68037248 original size:12 final size:12
Alignment explanation
Indices: 68037233--68037257 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68037223 GCCCTATAGC
68037233 AAGATGAAGATA
1 AAGATGAAGATA
68037245 AAGATGAAGATA
1 AAGATGAAGATA
68037257 A
1 A
68037258 TGAAGTGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AAGATGAAGATA
Found at i:68040569 original size:21 final size:22
Alignment explanation
Indices: 68040534--68040575 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
68040524 TTTTAGATAA
68040534 ATTTTTTTTCCTTTTT-ATATG
1 ATTTTTTTTCCTTTTTCATATG
**
68040555 ATTTTTTTTGTTTTTTCATAT
1 ATTTTTTTTCCTTTTTCATAT
68040576 TTTCAGTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.74
Consensus pattern (22 bp):
ATTTTTTTTCCTTTTTCATATG
Found at i:68040570 original size:22 final size:23
Alignment explanation
Indices: 68040519--68040575 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 23
68040509 ATATTGTGTG
*
68040519 TGTTTTTTTAGATAAATTTTTTT
1 TGTTTTTTTATATAAATTTTTTT
** *
68040542 T-CCTTTTTATAT-GATTTTTTT
1 TGTTTTTTTATATAAATTTTTTT
*
68040563 TGTTTTTTCATAT
1 TGTTTTTTTATAT
68040576 TTTCAGTTGT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
21 9 0.35
22 16 0.62
23 1 0.04
ACGTcount: A:0.18, C:0.05, G:0.07, T:0.70
Consensus pattern (23 bp):
TGTTTTTTTATATAAATTTTTTT
Found at i:68049293 original size:10 final size:10
Alignment explanation
Indices: 68049278--68049327 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
68049268 TAATTCTAGG
68049278 ATTTAT-TTT
1 ATTTATCTTT
68049287 CATTTATCTTT
1 -ATTTATCTTT
68049298 ATTTATCTTT
1 ATTTATCTTT
68049308 ATTTAT-TTGT
1 ATTTATCTT-T
68049318 ATTTATCTTT
1 ATTTATCTTT
68049328 TAGAATTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:68054475 original size:3 final size:3
Alignment explanation
Indices: 68054467--68054624 Score: 71
Period size: 3 Copynumber: 52.7 Consensus size: 3
68054457 TAAAACATGT
* * * *
68054467 ATA ATA AT- ATG ACA ATA ATA ATA ACA ACA ATA ATAA ATAA ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A AT-A ATA
* * * *
68054514 ATA AAA ATA AGA GTA A-A GAAA ATA A-A GATA A-A ATTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA -ATA ATA A-TA ATA ATA ATA
* * *
68054559 CTA ACTA AT- ATA AGTA ATA ATA GTA A-A ATA ATA ATA ATA ATA ATG
1 ATA A-TA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
68054604 GTA AT- ATA A-A TTA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
68054625 GGTGATGTAA
Statistics
Matches: 119, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
2 13 0.11
3 85 0.71
4 21 0.18
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:68054885 original size:3 final size:3
Alignment explanation
Indices: 68054871--68054951 Score: 55
Period size: 3 Copynumber: 28.3 Consensus size: 3
68054861 TTAATAAGAG
* * * *
68054871 TAA TAG TAA TAA TAA TAA AAA TAA TAA TAG TAGA T-A TAA TAA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * *
68054916 TAC TAC TAA TAA TAA -AA -AA TGA TAA TAA -AA -AA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
68054952 TAATTTGAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
2 10 0.16
3 53 0.83
4 1 0.02
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:68054942 original size:13 final size:13
Alignment explanation
Indices: 68054924--68054948 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68054914 ACTACTACTA
68054924 ATAATAAAAAATG
1 ATAATAAAAAATG
68054937 ATAATAAAAAAT
1 ATAATAAAAAAT
68054949 AATTAATTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
ATAATAAAAAATG
Found at i:68055585 original size:15 final size:15
Alignment explanation
Indices: 68055557--68055610 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
68055547 TTTGTATTTA
*
68055557 AAAG-AAAAATGAAG
1 AAAGAAAAAAAGAAG
68055571 AAAGAAAAAAAGAAG
1 AAAGAAAAAAAGAAG
* *
68055586 TAAATAAAATAA-AAG
1 -AAAGAAAAAAAGAAG
68055601 AAA-AAAAAAA
1 AAAGAAAAAAA
68055611 CTTTTTCCCG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
13 6 0.18
14 7 0.21
15 12 0.35
16 9 0.26
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (15 bp):
AAAGAAAAAAAGAAG
Found at i:68056337 original size:5 final size:5
Alignment explanation
Indices: 68056323--68056391 Score: 56
Period size: 5 Copynumber: 13.8 Consensus size: 5
68056313 GCAACCCAAT
*
68056323 TTTTA TTTTTA TTTTA TTTTA TTTTA --TTA TTTTA TTAATTA -ATTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT--TTA TTTTA
*
68056368 CTTTA TTTTA TTTT- TTATTA TTTT
1 TTTTA TTTTA TTTTA TT-TTA TTTT
68056392 TTTAGGTAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
3 3 0.06
4 5 0.09
5 35 0.66
6 7 0.13
7 3 0.06
ACGTcount: A:0.23, C:0.01, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:68056385 original size:7 final size:8
Alignment explanation
Indices: 68056331--68056391 Score: 52
Period size: 8 Copynumber: 6.9 Consensus size: 8
68056321 ATTTTTATTT
68056331 TTATTTTA
1 TTATTTTA
68056339 TTTTATTTTA
1 --TTATTTTA
68056349 TTATTTTA
1 TTATTTTA
68056357 TTAATTAATTA
1 TT-ATT--TTA
68056368 CTTTATTTTA
1 --TTATTTTA
68056378 TT-TTTTA
1 TTATTTTA
68056385 TTATTTT
1 TTATTTT
68056392 TTTAGGTAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
7 7 0.16
8 16 0.36
9 3 0.07
10 11 0.24
11 3 0.07
12 3 0.07
13 2 0.04
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (8 bp):
TTATTTTA
Found at i:68056405 original size:39 final size:39
Alignment explanation
Indices: 68056330--68056405 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 39
68056320 AATTTTTATT
*
68056330 TTTATTTTATTTTATTTTATTATTTTATTAATTAATTAC
1 TTTATTTTATTTTATTTTATTATTTTAGTAATTAATTAC
*
68056369 TTTATTTTATTTT-TTATTATTTTTTTAGGTAA-TAATT
1 TTTATTTTATTTTATT-TTATTATTTTA-GTAATTAATT
68056406 CATTTCTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 2 0.06
39 28 0.85
40 3 0.09
ACGTcount: A:0.26, C:0.01, G:0.03, T:0.70
Consensus pattern (39 bp):
TTTATTTTATTTTATTTTATTATTTTAGTAATTAATTAC
Found at i:68058368 original size:10 final size:10
Alignment explanation
Indices: 68058353--68058402 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
68058343 TAATTTTAAG
68058353 ATTTATCTTT
1 ATTTATCTTT
68058363 ATTTATCTTT
1 ATTTATCTTT
*
68058373 AATTATCTTT
1 ATTTATCTTT
*
68058383 ATTCAT-TTGT
1 ATTTATCTT-T
68058393 ATTTATCTTT
1 ATTTATCTTT
68058403 TGGAATAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:68061816 original size:15 final size:15
Alignment explanation
Indices: 68061796--68061825 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
68061786 CGAGGAGATC
68061796 TATATGGAGCAACTT
1 TATATGGAGCAACTT
68061811 TATATGGAGCAACTT
1 TATATGGAGCAACTT
68061826 CCAAGATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (15 bp):
TATATGGAGCAACTT
Found at i:68062937 original size:29 final size:27
Alignment explanation
Indices: 68062899--68062968 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 27
68062889 CATTCCTTTC
*
68062899 CAATGATAGCCACAGGACATTCCTTTTAA
1 CAATGATAGCCAAAGG-C-TTCCTTTTAA
*
68062928 TAATGATAGCTACAAAGGCTTCCTTTTAA
1 CAATGATAGC--CAAAGGCTTCCTTTTAA
*
68062957 CAAAGATAGCCA
1 CAATGATAGCCA
68062969 TAAATGTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
27 2 0.06
29 27 0.77
30 1 0.03
31 5 0.14
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.27
Consensus pattern (27 bp):
CAATGATAGCCAAAGGCTTCCTTTTAA
Found at i:68063015 original size:29 final size:30
Alignment explanation
Indices: 68062983--68063158 Score: 164
Period size: 29 Copynumber: 6.0 Consensus size: 30
68062973 TGTATTATTT
* *
68062983 TAATAGAGATCACCACAAAGGCTTTTTTATAA
1 TAATAGAGATCACCACAAAGGCATTCTT-T-A
** *
68063015 TAATAGAGATCATAAAAAAGGCATTCTTT-
1 TAATAGAGATCACCACAAAGGCATTCTTTA
* * *
68063044 TAATAGAGATCATCACAAAAG-ATTCCTTA
1 TAATAGAGATCACCACAAAGGCATTCTTTA
* * * *
68063073 TAATAAAGATAACCAAAAAGGCATTGTTT-
1 TAATAGAGATCACCACAAAGGCATTCTTTA
*
68063102 TAATAGAGATCACCACAAAGGC-TTCCTTA
1 TAATAGAGATCACCACAAAGGCATTCTTTA
* *
68063131 TAACAGAGGTCACCACAAAGGC-TTCTTT
1 TAATAGAGATCACCACAAAGGCATTCTTT
68063159 TCAGAGGTAG
Statistics
Matches: 117, Mismatches: 24, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
28 10 0.09
29 78 0.67
30 5 0.04
31 1 0.01
32 23 0.20
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (30 bp):
TAATAGAGATCACCACAAAGGCATTCTTTA
Found at i:68063151 original size:58 final size:58
Alignment explanation
Indices: 68062939--68063152 Score: 214
Period size: 58 Copynumber: 3.6 Consensus size: 58
68062929 AATGATAGCT
* * * *
68062939 ACAAAGGCTTCCTTTTAACAAAGAT-AGCCATAAATGTATTATTTTAATAGAGATCACC
1 ACAAAGGCTTCCTTATAACAAAGATCA-CCAAAAAGGCATTATTTTAATAGAGATCACC
** * ** * *
68062997 ACAAAGGCTTTTTTATAATAATAGAGATCATAAAAAAGGCATTCTTTTAATAGAGATCATC
1 ACAAAGGCTTCCTTATAA-CA-A-AGATCACCAAAAAGGCATTATTTTAATAGAGATCACC
* * * * *
68063058 ACAAAAGATTCCTTATAATAAAGATAACCAAAAAGGCATTGTTTTAATAGAGATCACC
1 ACAAAGGCTTCCTTATAACAAAGATCACCAAAAAGGCATTATTTTAATAGAGATCACC
* * *
68063116 ACAAAGGCTTCCTTATAACAGAGGTCACCACAAAGGC
1 ACAAAGGCTTCCTTATAACAAAGATCACCAAAAAGGC
68063153 TTCTTTTCAG
Statistics
Matches: 124, Mismatches: 28, Indels: 8
0.77 0.17 0.05
Matches are distributed among these distances:
58 77 0.62
59 2 0.02
60 2 0.02
61 42 0.34
62 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (58 bp):
ACAAAGGCTTCCTTATAACAAAGATCACCAAAAAGGCATTATTTTAATAGAGATCACC
Found at i:68065555 original size:43 final size:44
Alignment explanation
Indices: 68065507--68065675 Score: 141
Period size: 43 Copynumber: 3.9 Consensus size: 44
68065497 TACCGAGATA
* *
68065507 TGATTACATGTAAGATAATGTCTGGGACATTGGCATTGTAT-TG
1 TGATTACATGTAAAACAATGTCTGGGACATTGGCATTGTATATG
* * **
68065550 TGATTACGTGTAAAACCATGTCTGGGACATTAACATTGTTATAT-
1 TGATTACATGTAAAACAATGTCTGGGACATTGGCATTG-TATATG
* * * * * *
68065594 T-ATTTCGTGTAAAACACTGTCTAGGACAGTGGCATCG-ATATG
1 TGATTACATGTAAAACAATGTCTGGGACATTGGCATTGTATATG
* * * * *
68065636 TGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 TGATTACATGTAAAACAATGTCTGGGACATTGGCATTGTAT
68065676 GAACTTTATG
Statistics
Matches: 97, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
41 4 0.04
42 8 0.08
43 80 0.82
44 4 0.04
45 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.34
Consensus pattern (44 bp):
TGATTACATGTAAAACAATGTCTGGGACATTGGCATTGTATATG
Found at i:68070057 original size:27 final size:26
Alignment explanation
Indices: 68070027--68070105 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
68070017 AGGCAAAATG
*
68070027 GTAATTTTACCCCACAAGGGTATCTTT
1 GTAATTTTACCCTACAAGGGTAT-TTT
* *
68070054 GTAATTCTACCCTACAGGGGTATTTT
1 GTAATTTTACCCTACAAGGGTATTTT
* *
68070080 GATATTTTTACGCTACAAGGGTATTT
1 G-TAATTTTACCCTACAAGGGTATTT
68070106 CGGTAATTCT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.09
27 40 0.91
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (26 bp):
GTAATTTTACCCTACAAGGGTATTTT
Found at i:68070080 original size:26 final size:26
Alignment explanation
Indices: 68070027--68070117 Score: 92
Period size: 27 Copynumber: 3.4 Consensus size: 26
68070017 AGGCAAAATG
* *
68070027 GTAATTTTACCCCACAAGGGTATCTTT
1 GTAATTCTACCCTACAAGGGTAT-TTT
*
68070054 GTAATTCTACCCTACAGGGGTATTTT
1 GTAATTCTACCCTACAAGGGTATTTT
* * * *
68070080 GATATTTTTACGCTACAAGGGTATTTCG
1 G-TAATTCTACCCTACAAGGGTATTT-T
68070108 GTAATTCTAC
1 GTAATTCTAC
68070118 AAATTATCCA
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.08
27 47 0.90
28 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (26 bp):
GTAATTCTACCCTACAAGGGTATTTT
Found at i:68077275 original size:27 final size:26
Alignment explanation
Indices: 68077187--68077277 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 26
68077177 AGGAAAAATG
* * *
68077187 GTAATTTTACCCCACAAGGGTATCTC
1 GTAATTCTACCCTACAAGGGTATTTC
*
68077213 GGTAATTCTACCCTACAGGGGTATTTC
1 -GTAATTCTACCCTACAAGGGTATTTC
*
68077240 GATATTTCTACCCTACAAGGGTATTTC
1 G-TAATTCTACCCTACAAGGGTATTTC
68077267 TGTAATTCTAC
1 -GTAATTCTAC
68077278 AAATTATCCA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.35
Consensus pattern (26 bp):
GTAATTCTACCCTACAAGGGTATTTC
Found at i:68078152 original size:41 final size:41
Alignment explanation
Indices: 68078107--68078184 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
68078097 CGTTACAAAA
* *
68078107 GGGATTTGCTTTAAACCAATCTAACTATATAGAGAAAATGT
1 GGGATCTGCTTTAAACCAATCTAACTATATAAAGAAAATGT
* *
68078148 GGGATCTGCTTTAAACCAATTTCACTATATAAAGAAA
1 GGGATCTGCTTTAAACCAATCTAACTATATAAAGAAA
68078185 GTGCTAAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (41 bp):
GGGATCTGCTTTAAACCAATCTAACTATATAAAGAAAATGT
Found at i:68084806 original size:113 final size:113
Alignment explanation
Indices: 68084605--68084815 Score: 377
Period size: 113 Copynumber: 1.9 Consensus size: 113
68084595 TTTTTATTAA
* *
68084605 TCAAATGAGTCCTTCAATTTGAAGTACCGTTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
1 TCAAATGAGTCCATCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
* *
68084670 ATGCTTAAGTTGTTCAACTACCTTTATTAATACTTTTTATTAAGTTGT
66 ATGCTTAAGTAGTTCAACAACCTTTATTAATACTTTTTATTAAGTTGT
*
68084718 TCAAATGAGTCCATCAATTTGAAGTGCCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
1 TCAAATGAGTCCATCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
68084783 ATGCTTAAGTAGTTCAACAACCTTTATTAATAC
66 ATGCTTAAGTAGTTCAACAACCTTTATTAATAC
68084816 AATGAGTCTT
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 93 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.36
Consensus pattern (113 bp):
TCAAATGAGTCCATCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
ATGCTTAAGTAGTTCAACAACCTTTATTAATACTTTTTATTAAGTTGT
Found at i:68085043 original size:6 final size:6
Alignment explanation
Indices: 68085032--68085091 Score: 75
Period size: 6 Copynumber: 10.0 Consensus size: 6
68085022 CTGTGAAATG
* * * *
68085032 GTTATT GTTATT GTTATT ATTATT GTTGTT GTTGTT GTTGTT GTTATT
1 GTTATT GTTATT GTTATT GTTATT GTTATT GTTATT GTTATT GTTATT
*
68085080 GTTGTT GTTATT
1 GTTATT GTTATT
68085092 TTGCATTGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.12, C:0.00, G:0.22, T:0.67
Consensus pattern (6 bp):
GTTATT
Found at i:68085049 original size:12 final size:12
Alignment explanation
Indices: 68085036--68085091 Score: 85
Period size: 12 Copynumber: 4.7 Consensus size: 12
68085026 GAAATGGTTA
*
68085036 TTGTTATTGTTA
1 TTGTTATTGTTG
*
68085048 TTATTATTGTTG
1 TTGTTATTGTTG
*
68085060 TTGTTGTTGTTG
1 TTGTTATTGTTG
68085072 TTGTTATTGTTG
1 TTGTTATTGTTG
68085084 TTGTTATT
1 TTGTTATT
68085092 TTGCATTGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.11, C:0.00, G:0.21, T:0.68
Consensus pattern (12 bp):
TTGTTATTGTTG
Found at i:68085060 original size:3 final size:3
Alignment explanation
Indices: 68085054--68085088 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
68085044 GTTATTATTA
*
68085054 TTG TTG TTG TTG TTG TTG TTG TTA TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
68085089 ATTTTGCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.03, C:0.00, G:0.29, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:68090054 original size:16 final size:16
Alignment explanation
Indices: 68090033--68090078 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
68090023 AAATAGCCAC
*
68090033 TTTTTTGTCGTTTATG
1 TTTTTTTTCGTTTATG
* *
68090049 TTTTTTTTCTTTTATT
1 TTTTTTTTCGTTTATG
68090065 TATTTTTTTCGTTT
1 T-TTTTTTTCGTTT
68090079 GGTTTAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.07, C:0.07, G:0.09, T:0.78
Consensus pattern (16 bp):
TTTTTTTTCGTTTATG
Found at i:68099022 original size:53 final size:53
Alignment explanation
Indices: 68098941--68099086 Score: 195
Period size: 53 Copynumber: 2.7 Consensus size: 53
68098931 CTTACACGGT
* *
68098941 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACAGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACAGAATCACATTA
* *
68098996 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACAGAATCACATTA
** *
68099049 TCACATTGCACCGATGCCATAGCCCAGCTATAGTCTTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTA
68099087 AATGGGCGCA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 75 0.90
54 1 0.01
55 6 0.07
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACAGAATCACATTA
Found at i:68103040 original size:55 final size:55
Alignment explanation
Indices: 68102976--68103117 Score: 140
Period size: 55 Copynumber: 2.6 Consensus size: 55
68102966 GTGCACGCCC
* * *
68102976 CACGCCCGTGTTAATTTGACAGGTTCGACCACGGGTGTTAGACACTGGCGTCTCG
1 CACGCCCGTGTTAATTTGACAGGTTCGACCACGGGTCTTACACACGGGCGTCTCG
* * * ** * * * *
68103031 CATGCCCGTGCTAGTTTCTCAGTTTCAACCACGGGTCTTCCACACGGGCGTGTCG
1 CACGCCCGTGTTAATTTGACAGGTTCGACCACGGGTCTTACACACGGGCGTCTCG
** * *
68103086 CACGCCCGTGTTGTTTTGGCAGGCTCGACCAC
1 CACGCCCGTGTTAATTTGACAGGTTCGACCAC
68103118 AGTTATGTCA
Statistics
Matches: 66, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.15, C:0.31, G:0.27, T:0.26
Consensus pattern (55 bp):
CACGCCCGTGTTAATTTGACAGGTTCGACCACGGGTCTTACACACGGGCGTCTCG
Found at i:68113580 original size:24 final size:24
Alignment explanation
Indices: 68113553--68113599 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
68113543 GTTATTTTAC
68113553 TTTTTCAAAAATTTAGAATTTAAT
1 TTTTTCAAAAATTTAGAATTTAAT
* ** *
68113577 TTTTTTAAATTTTTAGATTTTAA
1 TTTTTCAAAAATTTAGAATTTAA
68113600 AATTTTATTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (24 bp):
TTTTTCAAAAATTTAGAATTTAAT
Found at i:68114950 original size:2 final size:2
Alignment explanation
Indices: 68114943--68114969 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
68114933 CTTAAACCTA
68114943 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
68114970 ACGTTAGTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68115149 original size:5 final size:5
Alignment explanation
Indices: 68115139--68115176 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
68115129 TTGGTGCTTG
*
68115139 AGCTA AGCTA AGCTA AGCTA AGCTA AGCAA AGC-A AGCT
1 AGCTA AGCTA AGCTA AGCTA AGCTA AGCTA AGCTA AGCT
68115177 TTTGAATTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.16
Consensus pattern (5 bp):
AGCTA
Found at i:68115960 original size:50 final size:50
Alignment explanation
Indices: 68115899--68116002 Score: 208
Period size: 50 Copynumber: 2.1 Consensus size: 50
68115889 AGTTATATCA
68115899 TTTGTATTGTGAGGTTTTGGGGAGAGTGATTGTGACAACTTGGATTTGAC
1 TTTGTATTGTGAGGTTTTGGGGAGAGTGATTGTGACAACTTGGATTTGAC
68115949 TTTGTATTGTGAGGTTTTGGGGAGAGTGATTGTGACAACTTGGATTTGAC
1 TTTGTATTGTGAGGTTTTGGGGAGAGTGATTGTGACAACTTGGATTTGAC
68115999 TTTG
1 TTTG
68116003 GGGATGCAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.19, C:0.06, G:0.34, T:0.41
Consensus pattern (50 bp):
TTTGTATTGTGAGGTTTTGGGGAGAGTGATTGTGACAACTTGGATTTGAC
Found at i:68120431 original size:3 final size:3
Alignment explanation
Indices: 68120423--68120451 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
68120413 GGTTTATCAG
68120423 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
68120452 TAAGGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:68132545 original size:25 final size:25
Alignment explanation
Indices: 68132482--68132547 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
68132472 GTCATTAGGG
* * *
68132482 TTACCTATTCTCAGCTCGTATAAGC
1 TTACCGATACTCAGCTCGTAGAAGC
* * *
68132507 TTACTGATATTCAGCTCGTAGGAGC
1 TTACCGATACTCAGCTCGTAGAAGC
*
68132532 TTACCGTTACTCAGCT
1 TTACCGATACTCAGCT
68132548 TGAAAGGGCT
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (25 bp):
TTACCGATACTCAGCTCGTAGAAGC
Found at i:68135484 original size:18 final size:20
Alignment explanation
Indices: 68135442--68135478 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
68135432 ATATTTTATG
*
68135442 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
68135461 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
68135479 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:68137684 original size:46 final size:46
Alignment explanation
Indices: 68137632--68137996 Score: 457
Period size: 46 Copynumber: 8.0 Consensus size: 46
68137622 AGTGTGCTCT
*
68137632 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
68137678 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
68137724 CTGATATGAAACGTGTAAAACCATGGTTGAAAGATACCATGAC-AC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
68137769 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
68137815 TTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *** * *
68137861 ATGACGA-GAAATAAATAAGACCATGGTTGAAAGATACCATGGTAGC
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
68137907 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
68137953 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
68137997 TCATGTCAAA
Statistics
Matches: 286, Mismatches: 29, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
45 44 0.15
46 241 0.84
47 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:68137884 original size:137 final size:137
Alignment explanation
Indices: 68137632--68138019 Score: 476
Period size: 137 Copynumber: 2.8 Consensus size: 137
68137622 AGTGTGCTCT
* *
68137632 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAG
* * * **** *
68137697 ACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAACGTGTAAAACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAACATGACA-GAAATAAATAAGACCATGGTTGAAAGATACC
68137762 ATGACA-C
130 ATGACAGC
* * * *
68137769 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGCTTGATATGAAACGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAG
68137834 ACCATGGTTGAAAGATACCATGGCAACATGACGAGAAATAAATAAGACCATGGTTGAAAGATACC
66 ACCATGGTTGAAAGATACCATGGCAACATGAC-AGAAATAAATAAGACCATGGTTGAAAGATACC
**
68137899 ATGGTAGC
130 ATGACAGC
* * ** * *
68137907 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATGTGTAA
* * * * *
68137971 GACCATAGTTGAAAGACACTATGGCATCATGTCA-AAGATAAATAAGACC
65 GACCATGGTTGAAAGATACCATGGCAACATGACAGAA-ATAAATAAGACC
68138020 GTGGATGGGA
Statistics
Matches: 217, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
136 2 0.01
137 133 0.61
138 82 0.38
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (137 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAG
ACCATGGTTGAAAGATACCATGGCAACATGACAGAAATAAATAAGACCATGGTTGAAAGATACCA
TGACAGC
Found at i:68137941 original size:183 final size:184
Alignment explanation
Indices: 68137633--68137996 Score: 491
Period size: 183 Copynumber: 2.0 Consensus size: 184
68137623 GTGTGCTCTC
* * * ***
68137633 TGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAACGTGTAAGACCATAGTTGAAAGATACCATGGCAACATGAGATGAAATAAATAAGA
* **
68137698 CCATGGTTGAAAGATACCATGGCAGCCTGATATGAAACGTGTAAAACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAAACCATGGTTGAAAGATACCA
* * * * *
68137763 TGAC-ACCTGATATG-AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGCT
131 TGACAACATGACA-GAAAACGAGTAAGACCATAGTTGAAAGACACCATGGCAGCT
*
68137816 TGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGA-GAAATAAATAAG
1 TGATATGAAACGTGTAAGACCATAGTTGAAAGATACCATGGCAACATGA-GATGAAATAAATAAG
* * * *
68137880 ACCATGGTTGAAAGATACCATGGTAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACC
65 ACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAAACCATGGTTGAAAGATACC
* * *
68137945 ATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
130 ATGACAACATGACAGAAAACGAGTAAGACCATAGTTGAAAGACACCATGGCA
68137997 TCATGTCAAA
Statistics
Matches: 156, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
183 118 0.76
184 38 0.24
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (184 bp):
TGATATGAAACGTGTAAGACCATAGTTGAAAGATACCATGGCAACATGAGATGAAATAAATAAGA
CCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAAACCATGGTTGAAAGATACCA
TGACAACATGACAGAAAACGAGTAAGACCATAGTTGAAAGACACCATGGCAGCT
Found at i:68146070 original size:20 final size:20
Alignment explanation
Indices: 68146045--68146086 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
68146035 TGTACGCATC
68146045 CCGACGAATCTTACAAAAGA
1 CCGACGAATCTTACAAAAGA
68146065 CCGACGAATCTTACAAAAGA
1 CCGACGAATCTTACAAAAGA
68146085 CC
1 CC
68146087 TAAACTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.29, G:0.14, T:0.14
Consensus pattern (20 bp):
CCGACGAATCTTACAAAAGA
Found at i:68149869 original size:28 final size:28
Alignment explanation
Indices: 68149829--68150037 Score: 147
Period size: 28 Copynumber: 7.5 Consensus size: 28
68149819 TCTACAGAAT
* * * *
68149829 AGATAGACCTTGGAGGTCATTCCACATA
1 AGATAGTCTTTGGAGGACTTTCCACATA
* **
68149857 AGATAGTCTTTGGCGGACTTTCCATGTA
1 AGATAGTCTTTGGAGGACTTTCCACATA
* *
68149885 AGATATTCCTTGGCA-GACTTTCCACATA
1 AGATAGTCTTTGG-AGGACTTTCCACATA
* * * * **
68149913 AGATAGTCATTGGCGGGCATTCCATGTA
1 AGATAGTCTTTGGAGGACTTTCCACATA
* * *
68149941 AGATAGTCTTT-AACGGGCTTTCCACGTA
1 AGATAGTCTTTGGA-GGACTTTCCACATA
* * *
68149969 AGATAGTCATTAGCA-GACTTTCCAAATA
1 AGATAGTC-TTTGGAGGACTTTCCACATA
* *
68149997 AGATAGTCTTTCGTA-AACTTTCCACATA
1 AGATAGTCTTT-GGAGGACTTTCCACATA
68150025 AGATAGTCTTTGG
1 AGATAGTCTTTGG
68150038 TAGGCTTCCC
Statistics
Matches: 141, Mismatches: 34, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
27 3 0.02
28 135 0.96
29 2 0.01
30 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (28 bp):
AGATAGTCTTTGGAGGACTTTCCACATA
Found at i:68149917 original size:84 final size:84
Alignment explanation
Indices: 68149829--68150037 Score: 231
Period size: 84 Copynumber: 2.5 Consensus size: 84
68149819 TCTACAGAAT
* * * * * *
68149829 AGATAGACCTTGGAGGTCATTCCACATAAGATAGTCTTTGGCGGACTTTCCATGTAAGATATTCC
1 AGATAGTCATTGGAGGACATTCCACATAAGATAGTCTTTGGCGGACTTTCCACGTAAGATAGTCA
* *
68149894 TTGGCAGACTTTCCACATA
66 TTAGCAGACTTTCCAAATA
* * ** ** *
68149913 AGATAGTCATTGGCGGGCATTCCATGTAAGATAGTCTTTAACGGGCTTTCCACGTAAGATAGTCA
1 AGATAGTCATTGGAGGACATTCCACATAAGATAGTCTTTGGCGGACTTTCCACGTAAGATAGTCA
68149978 TTAGCAGACTTTCCAAATA
66 TTAGCAGACTTTCCAAATA
* * * *
68149997 AGATAGTCTTTCGTA-AACTTTCCACATAAGATAGTCTTTGG
1 AGATAGTCATT-GGAGGACATTCCACATAAGATAGTCTTTGG
68150038 TAGGCTTCCC
Statistics
Matches: 100, Mismatches: 24, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
84 99 0.99
85 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (84 bp):
AGATAGTCATTGGAGGACATTCCACATAAGATAGTCTTTGGCGGACTTTCCACGTAAGATAGTCA
TTAGCAGACTTTCCAAATA
Found at i:68152690 original size:39 final size:39
Alignment explanation
Indices: 68152636--68152719 Score: 159
Period size: 39 Copynumber: 2.2 Consensus size: 39
68152626 CAAACGACTG
68152636 ATCTTCTAAGGAAACCCTACACAACACTTAATTAATCAT
1 ATCTTCTAAGGAAACCCTACACAACACTTAATTAATCAT
68152675 ATCTTCTAAGGAAACCCTACACAACACTTAATTAATCAT
1 ATCTTCTAAGGAAACCCTACACAACACTTAATTAATCAT
*
68152714 ACCTTC
1 ATCTTC
68152720 ACTCGCTAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.39, C:0.27, G:0.05, T:0.29
Consensus pattern (39 bp):
ATCTTCTAAGGAAACCCTACACAACACTTAATTAATCAT
Found at i:68153985 original size:18 final size:18
Alignment explanation
Indices: 68153962--68153996 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
68153952 CAAGAACTAT
68153962 AAGCATCAAAATAGTTTC
1 AAGCATCAAAATAGTTTC
*
68153980 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
68153997 GACACATCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:68180070 original size:36 final size:36
Alignment explanation
Indices: 68180030--68180098 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
68180020 TAAGAACTTA
*
68180030 AGAAGA-TCCGATATCTCGTTTAGGATCTTGGGATTG
1 AGAAGACT-CGATATCTCGTTTAGGAGCTTGGGATTG
*
68180066 AGAAGACTTGATATCTCGTTTAGGAGCTTGGGA
1 AGAAGACTCGATATCTCGTTTAGGAGCTTGGGA
68180099 AGACTCTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
36 29 0.97
37 1 0.03
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (36 bp):
AGAAGACTCGATATCTCGTTTAGGAGCTTGGGATTG
Found at i:68188234 original size:45 final size:45
Alignment explanation
Indices: 68188126--68188491 Score: 243
Period size: 45 Copynumber: 7.8 Consensus size: 45
68188116 TTATAGCCAC
* * *
68188126 AAATCTTATCTCCCTAAAGTTACAGTAGAGCAGATTGAAGATAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGT
68188171 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGT
* * ** * ** * *
68188216 GAATCTTATTTCTTTGAAGTTGCAATGGAATAGATTAAAGCTACAAGTTAT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--A-TAG---T
* * *
68188267 AAACCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGT
* * ** * * *
68188312 AAATCTT-TTTTCCTGAAGTTAAAGTGGAACAGATTAAAGCTTCAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-AT--AG-T
* * * * * * *
68188360 ACAAATCTTATCTACCTAAAGTTGCAGTAGG-TCGGATTAAATCTACAGT
1 --AAATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTGAA--GATAGT
* *
68188409 GGAGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-C
1 --A-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGT
* **
68188456 AAATCTTATCTCCCTGAAGTTGTAGCAGAGCAGATT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
68188492 AAAGCAACAA
Statistics
Matches: 246, Mismatches: 57, Indels: 37
0.72 0.17 0.11
Matches are distributed among these distances:
44 58 0.24
45 82 0.33
47 3 0.01
48 5 0.02
49 5 0.02
50 39 0.16
51 52 0.21
52 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (45 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGT
Found at i:68188292 original size:96 final size:95
Alignment explanation
Indices: 68188170--68188387 Score: 303
Period size: 96 Copynumber: 2.3 Consensus size: 95
68188160 TTGAAGATAG
** *
68188170 TAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTGAATCTTATTTCTTTGAAG
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTC-CTGAAG
* *
68188235 TTGCAA-TGGAATAGATTAAAGCTACAAGTTA
65 TT-AAAGTGGAACAGATTAAAGCTACAAGTTA
* * *
68188266 TAAACCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTTTTTCCTGAAGT
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCTGAAGT
*
68188331 TAAAGTGGAACAGATTAAAGCTTCAAGTTA
66 TAAAGTGGAACAGATTAAAGCTACAAGTTA
* * *
68188361 CAAATCTTATCTACCTAAAGTTGCAGT
1 TAAATCTTATCTCCCTGAAGTTGCAGT
68188388 AGGTCGGATT
Statistics
Matches: 107, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
94 2 0.02
95 52 0.49
96 53 0.50
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (95 bp):
TAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATTTCCTGAAGT
TAAAGTGGAACAGATTAAAGCTACAAGTTA
Found at i:68188502 original size:44 final size:44
Alignment explanation
Indices: 68188413--68188504 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
68188403 TACAGTGGAG
** * **
68188413 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATTAAAGCAACA
*
68188457 AATCTTATCTCCCTGAAGTTGTAGCAGAGCAGATTAAAGCAACA
1 AATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATTAAAGCAACA
68188501 AATC
1 AATC
68188505 CTATACCTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATTAAAGCAACA
Found at i:68190267 original size:15 final size:16
Alignment explanation
Indices: 68190241--68190274 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
68190231 ATCGAACATC
68190241 ATTTATTTATTTTACT
1 ATTTATTTATTTTACT
*
68190257 ATTTA-TTATTTTATT
1 ATTTATTTATTTTACT
68190272 ATT
1 ATT
68190275 ATCTATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTATTTATTTTACT
Found at i:68190281 original size:15 final size:14
Alignment explanation
Indices: 68190247--68190295 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
68190237 CATCATTTAT
*
68190247 TTATTTTACTATTTA
1 TTATTTTATTA-TTA
68190262 TTATTTTATTATTA
1 TTATTTTATTATTA
68190276 TCTA-TTTA-T-TTA
1 T-TATTTTATTATTA
68190288 TTATTTTA
1 TTATTTTA
68190296 ATTTTTAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
11 2 0.06
12 8 0.26
13 1 0.03
14 8 0.26
15 12 0.39
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (14 bp):
TTATTTTATTATTA
Done.