Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 207 of 253
Found at i:68202605 original size:20 final size:20
Alignment explanation
Indices: 68202582--68202637 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
68202572 TGCTAATAAT
*
68202582 GGCACCAAAGTGCAATCAGG
1 GGCACCAAAGTGCAAACAGG
** *
68202602 GGCACTGAAGTGTAAACAGG
1 GGCACCAAAGTGCAAACAGG
68202622 GGCACCAAAGTGCAAA
1 GGCACCAAAGTGCAAA
68202638 TATATAGACA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.30, T:0.11
Consensus pattern (20 bp):
GGCACCAAAGTGCAAACAGG
Found at i:68203676 original size:3 final size:3
Alignment explanation
Indices: 68203668--68203702 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
68203658 TATTTTAACA
68203668 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
68203703 AAGCATAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:68209541 original size:22 final size:22
Alignment explanation
Indices: 68209516--68209561 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
68209506 TAATACAAAA
68209516 TTAATTTTTTATAAT-TTTTTAT
1 TTAA-TTTTTATAATATTTTTAT
*
68209538 TTAATTTTTATTATATTTTTAT
1 TTAATTTTTATAATATTTTTAT
68209560 TT
1 TT
68209562 TAGTCACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (22 bp):
TTAATTTTTATAATATTTTTAT
Found at i:68209542 original size:12 final size:11
Alignment explanation
Indices: 68209515--68209557 Score: 54
Period size: 10 Copynumber: 3.9 Consensus size: 11
68209505 GTAATACAAA
68209515 ATTAATTTTTT
1 ATTAATTTTTT
68209526 A-TAATTTTTT
1 ATTAATTTTTT
68209536 ATTTAA-TTTTT
1 A-TTAATTTTTT
68209547 ATTATATTTTT
1 ATTA-ATTTTT
68209558 ATTTTAGTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 13 0.46
11 8 0.29
12 7 0.25
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTAATTTTTT
Found at i:68222596 original size:25 final size:24
Alignment explanation
Indices: 68222564--68222611 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
68222554 TTAAGTTCAT
* *
68222564 TTTCATATCATTTTTGTTATTTTA
1 TTTCATATCATTATTATTATTTTA
*
68222588 TTTCTATATTATTATTATTATTTT
1 TTTC-ATATCATTATTATTATTTT
68222612 TATTATTCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (24 bp):
TTTCATATCATTATTATTATTTTA
Found at i:68222889 original size:22 final size:25
Alignment explanation
Indices: 68222856--68222907 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 25
68222846 CATACTTTTG
68222856 TTGTTATGTAT-ATA-TTT-TAATA
1 TTGTTATGTATAATATTTTATAATA
68222878 TTGTTA-GTTATAAATATTTTATAATA
1 TTGTTATG-TAT-AATATTTTATAATA
68222904 TTGT
1 TTGT
68222908 ATGCATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
21 1 0.04
22 9 0.36
24 3 0.12
25 3 0.12
26 9 0.36
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.58
Consensus pattern (25 bp):
TTGTTATGTATAATATTTTATAATA
Found at i:68226500 original size:11 final size:11
Alignment explanation
Indices: 68226463--68226513 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
68226453 CACAATAGTC
68226463 CTCTCATAATTAT
1 CTCTCA-AATT-T
68226476 CTCT-AAA-TT
1 CTCTCAAATTT
68226485 CTCTCAAATTT
1 CTCTCAAATTT
*
68226496 CTCTCATATTT
1 CTCTCAAATTT
68226507 -TCTCAAA
1 CTCTCAAA
68226514 GCTCTCTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
9 5 0.15
10 10 0.29
11 14 0.41
12 1 0.03
13 4 0.12
ACGTcount: A:0.29, C:0.25, G:0.00, T:0.45
Consensus pattern (11 bp):
CTCTCAAATTT
Found at i:68226510 original size:21 final size:21
Alignment explanation
Indices: 68226463--68226513 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
68226453 CACAATAGTC
68226463 CTCTCATAATTATCTCTAAATT
1 CTCTCA-AATTATCTCTAAATT
*
68226485 CTCTCAAATT-TCTCTCATATT
1 CTCTCAAATTATCTCT-AAATT
*
68226506 TTCTCAAA
1 CTCTCAAA
68226514 GCTCTCTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 5 0.19
21 15 0.58
22 6 0.23
ACGTcount: A:0.29, C:0.25, G:0.00, T:0.45
Consensus pattern (21 bp):
CTCTCAAATTATCTCTAAATT
Found at i:68228824 original size:97 final size:97
Alignment explanation
Indices: 68228657--68229072 Score: 351
Period size: 97 Copynumber: 4.4 Consensus size: 97
68228647 CCAAGATGTA
* * * * * * *
68228657 ATGCCGATGCCATATCTCAGACATGTTCTTAAACTGGCTTATCCATCAAGTTGATGTCATGTCCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCTCATCCATCAAGTCGATGCCATGTCCC
* *
68228722 AGACATGGTCTTACATTGATTCTCACATATCC
66 AGACATGGTCTTACACTGACTCTCACATATCC
* * *
68228754 GTGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCTCATCCATCAAGTCGATGCCATGTCCC
68228819 AGACATGGTCTTACACTGACTCTCACATATCC
66 AGACATGGTCTTACACTGACTCTCACATATCC
* * * ** ** * *
68228851 ATGTCGATGCCATGTTCCAGACATGGTCTTAAACT-GACACAT-TTTGTAGCCAATG-CATGTCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTAAACTAG-CTCATCCATCAAGTCGATGCCATGTCC
* * *
68228913 CAGACAT-GTCTTACACTGGCT-T-ACATCTCG
65 CAGACATGGTCTTACACTGACTCTCACATATCC
* * * * *
68228943 AGGCCGATG-CATGTCCCAGACAT-GTCCTACACTAGCTC-TCGTC-TCAATGCCAATGCCATGT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCTCATC--CATCAA-GTCGATGCCATG-
** * *
68229004 TATC-GACATGGTCTTACACTGGCTCTCATA-AT--
62 TCCCAGACATGGTCTTACACTGACTCTCACATATCC
* *
68229036 GTGCCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ATG-CCGATGCCATGTCCCAGACATGGTCTTAAACTAGC
68229073 ACACAAATGA
Statistics
Matches: 264, Mismatches: 43, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
89 1 0.00
90 10 0.04
91 16 0.06
92 20 0.08
93 11 0.04
94 61 0.23
95 16 0.06
96 10 0.04
97 119 0.45
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (97 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTAAACTAGCTCATCCATCAAGTCGATGCCATGTCCC
AGACATGGTCTTACACTGACTCTCACATATCC
Found at i:68228825 original size:47 final size:47
Alignment explanation
Indices: 68228661--68229072 Score: 198
Period size: 47 Copynumber: 8.7 Consensus size: 47
68228651 GATGTAATGC
* * * * * *
68228661 CGATGCCATATCTCAGACATGTTCTTAAACTGGCTTATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
* * * * * *
68228708 TGATGTCATGTCCCAGACATGGTCTTACATTGATTCTCA-CATATC-CGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-A-GCTCATC-CATCAAGT
*
68228756 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGT
1 --CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
*
68228805 CGATGCCATGTCCCAGACATGGTCTTACACT-GACTC-TCACATATCCATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATC-C--AT-CAAGT
* * * ** ** *
68228855 CGATGCCATGTTCCAGACATGGTCTTAAACT-GACACAT-TTTGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCCATCAAGT
* * * *
68228901 CAATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-C-TCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC-T-CATCCATC-AAGT
* *
68228947 CGATG-CATGTCCCAGACAT-GTCCTACACTAGCTC-TCGTC-TCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC--CATCAA-GT
* ** *
68228993 CAATGCCATGTTATC-GACATGGTCTTACACTGGCTC-T-CAT-AATGT
1 CGATGCCATG-TCCCAGACATGGTCTTACACTAGCTCATCCATCAA-GT
68229038 GCCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ---CGATGCCATGTCCCAGACATGGTCTTACACTAGC
68229073 ACACAAATGA
Statistics
Matches: 284, Mismatches: 52, Indels: 59
0.72 0.13 0.15
Matches are distributed among these distances:
43 1 0.00
44 11 0.04
45 22 0.08
46 66 0.23
47 77 0.27
48 30 0.11
49 12 0.04
50 64 0.23
51 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
Found at i:68228888 original size:50 final size:50
Alignment explanation
Indices: 68228709--68228888 Score: 226
Period size: 50 Copynumber: 3.7 Consensus size: 50
68228699 CCATCAAGTT
* * * * *
68228709 GATGTCATGTCCCAGACATGGTCTTACATTGATTCTCACATATCCGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCATGTC
* *
68228759 GATGCCATGTCCCAAACATGGTCTTACACT-AGCTCATC-C--AT-CAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTC-TCACATATCCATGTC
68228806 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCATGTC
* *
68228856 GATGCCATGTTCCAGACATGGTCTTAAACTGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC
68228889 ACATTTTGTA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
46 2 0.02
47 36 0.32
48 3 0.03
49 3 0.03
50 66 0.59
51 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCATGTC
Found at i:68228957 original size:46 final size:48
Alignment explanation
Indices: 68228709--68229069 Score: 214
Period size: 46 Copynumber: 7.6 Consensus size: 48
68228699 CCATCAAGTT
* * * * * *
68228709 GATGTCATGTCCCAGACATGGTCTTACATTGATTCTCACATATCCG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTG--GCTCTCATCT-CGAGGCC
* * * *
68228759 GATGCCATGTCCCAAACATGGTCTTACACTAG--CTCATCCATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-C-TCGAGGCC
* * * * *
68228806 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CATCTCGAGGCC
* * * * * *
68228856 GATGCCATGTTCCAGACATGGTCTTAAACT-G-ACACATTTTGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCG-AGGCC
*
68228902 AATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTCGAGGCC
* * * * *
68228948 GATG-CATGTCCCAGACAT-GTCCTACACTAGCTCTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAGGCC
* ** * * *
68228994 AATGCCATGTTATC-GACATGGTCTTACACTGGCTCTCATAAT-GTGCCC
1 GATGCCATG-TCCCAGACATGGTCTTACACTGGCTCTCAT-CTCGAGGCC
68229042 GATG-CATGTCCCAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
68229070 AGCACACAAA
Statistics
Matches: 242, Mismatches: 50, Indels: 42
0.72 0.15 0.13
Matches are distributed among these distances:
44 9 0.04
45 15 0.06
46 74 0.31
47 52 0.21
48 25 0.10
49 5 0.02
50 59 0.24
51 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAGGCC
Found at i:68236567 original size:47 final size:47
Alignment explanation
Indices: 68236408--68236633 Score: 217
Period size: 50 Copynumber: 4.7 Consensus size: 47
68236398 GATATAATGC
* *
68236408 CGATGCCATGTCCCAGAAATGGTCTT-CACTGATTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAGT
* * * * *
68236454 CGATGCCATGTCCCTGGCATGGTCTTATATTGACTC-TCACATATCCATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC-C--AT-CAAGT
* *
68236504 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAGT
* * * *
68236551 CGGTGCCATGACCCAGACATGGTCTAACACTGACTC-TCGCAT-ATCCGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC-CATCA--AGT
*
68236599 ACCGATGCCATGTACCAGACATGGTCTTACACTGA
1 --CGATGCCATGTCCCAGACATGGTCTTACACTGA
68236634 TACATTTTGT
Statistics
Matches: 145, Mismatches: 24, Indels: 18
0.78 0.13 0.10
Matches are distributed among these distances:
46 28 0.19
47 45 0.31
48 3 0.02
49 2 0.01
50 65 0.45
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAGT
Found at i:68236573 original size:97 final size:97
Alignment explanation
Indices: 68236407--68236633 Score: 303
Period size: 97 Copynumber: 2.4 Consensus size: 97
68236397 AGATATAATG
* * * * * *
68236407 CCGATGCCATGTCCCAGAAATGGTCTT-CACTGATTCATCCATCAAGTCGATGCCATGTCCCTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAATCGATGCCATGACCCAGA
* * * *
68236471 CATGGTCTTATATTGACTCTCACATATCCATG
66 CATGGTCTAACACTGACTCTCACATATCCATA
* * *
68236503 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAATCGGTGCCATGACCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAATCGATGCCATGACCCAGA
* *
68236568 CATGGTCTAACACTGACTCTCGCATATCCGTA
66 CATGGTCTAACACTGACTCTCACATATCCATA
*
68236600 CCGATGCCATGTACCAGACATGGTCTTACACTGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA
68236634 TACATTTTGT
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
96 25 0.22
97 87 0.78
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (97 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATCAAATCGATGCCATGACCCAGA
CATGGTCTAACACTGACTCTCACATATCCATA
Found at i:68238321 original size:10 final size:10
Alignment explanation
Indices: 68238300--68238351 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
68238290 AATTAAATTC
68238300 TAAAAGATAAA
1 TAAAA-ATAAA
68238311 TAAAAATAAA
1 TAAAAATAAA
* *
68238321 TAAAGATAAT
1 TAAAAATAAA
*
68238331 TAAAGATAAA
1 TAAAAATAAA
*
68238341 TGAAAATAAA
1 TAAAAATAAA
68238351 T
1 T
68238352 CCTAAAGTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
10 31 0.86
11 5 0.14
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:68238325 original size:20 final size:21
Alignment explanation
Indices: 68238302--68238351 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
68238292 TTAAATTCTA
68238302 AAAGATAAATAAAAATAAAT-
1 AAAGATAAATAAAAATAAATG
* *
68238322 AAAGATAATTAAAGATAAATG
1 AAAGATAAATAAAAATAAATG
68238343 AAA-ATAAAT
1 AAAGATAAAT
68238352 CCTAAAGTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.22
Consensus pattern (21 bp):
AAAGATAAATAAAAATAAATG
Found at i:68239184 original size:93 final size:93
Alignment explanation
Indices: 68239016--68239189 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
68239006 TTTATGTTTA
* * *
68239016 CTTAGGAATATATTAAACCTTTTGACTCGAAGAGAGATGACAGCCAAGCACCCCGCCCCGGTTAC
1 CTTAAGAACATATTAAACCTTTTGACTCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTAC
68239081 TCAGCCCAACACATTCCTAATTTTTTTT
66 TCAGCCCAACACATTCCTAATTTTTTTT
* * * *
68239109 CTTAAGAACATATTGAACCTTTTGACTTGAAGAGAGATGATAGCCAAGCACCTCACCCCGGTTAC
1 CTTAAGAACATATTAAACCTTTTGACTCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTAC
68239174 TCAGCCCAACACATTC
66 TCAGCCCAACACATTC
68239190 TTAAAAATTA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (93 bp):
CTTAAGAACATATTAAACCTTTTGACTCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTAC
TCAGCCCAACACATTCCTAATTTTTTTT
Found at i:68240091 original size:21 final size:21
Alignment explanation
Indices: 68240065--68240147 Score: 73
Period size: 21 Copynumber: 4.0 Consensus size: 21
68240055 AATAATTATG
*
68240065 TAATAAATCATT-AAGATAAAA
1 TAATAAAT-ATTAAAAATAAAA
68240086 TAATAAATATTAAAAATAAAA
1 TAATAAATATTAAAAATAAAA
*
68240107 TAATAAA-AAT-AAAATAAAGA
1 TAATAAATATTAAAAATAAA-A
* * *
68240127 AAAGTAAAAATAAAAAATAAA
1 TAA-TAAATATTAAAAATAAA
68240148 GAGAAATAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
19 8 0.15
20 8 0.15
21 27 0.52
22 1 0.02
23 8 0.15
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.23
Consensus pattern (21 bp):
TAATAAATATTAAAAATAAAA
Found at i:68240103 original size:13 final size:13
Alignment explanation
Indices: 68240087--68240147 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 13
68240077 AAGATAAAAT
*
68240087 AATAAATATTAAA
1 AATAAATAATAAA
68240100 AATAAAATAATAAA
1 AAT-AAATAATAAA
68240114 AATAAAATAA-AGAA
1 AAT-AAATAATA-AA
68240128 AAGTAAA-AATAAAA
1 AA-TAAATAAT-AAA
68240142 AATAAA
1 AATAAA
68240148 GAGAAATAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
13 10 0.24
14 30 0.71
15 2 0.05
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (13 bp):
AATAAATAATAAA
Found at i:68240113 original size:14 final size:14
Alignment explanation
Indices: 68240090--68240123 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
68240080 ATAAAATAAT
*
68240090 AAATATTAAAAATA
1 AAATAATAAAAATA
68240104 AAATAATAAAAATA
1 AAATAATAAAAATA
68240118 AAATAA
1 AAATAA
68240124 AGAAAAGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAATAATAAAAATA
Found at i:68240129 original size:14 final size:13
Alignment explanation
Indices: 68240097--68240147 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 13
68240087 AATAAATATT
68240097 AAAAATAAAATAA
1 AAAAATAAAATAA
68240110 TAAAAATAAAATAA
1 -AAAAATAAAATAA
68240124 AGAAAAGTAAAA-ATA
1 A-AAAA-TAAAATA-A
68240139 AAAAATAAA
1 AAAAATAAA
68240148 GAGAAATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
13 5 0.15
14 22 0.65
15 7 0.21
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATAAAATAA
Found at i:68240143 original size:23 final size:21
Alignment explanation
Indices: 68240087--68240160 Score: 80
Period size: 23 Copynumber: 3.4 Consensus size: 21
68240077 AAGATAAAAT
* *
68240087 AATAAATATTAAAAATAAA-AT
1 AATAAA-AATAAAAATAAAGAA
68240108 AATAAAAAT-AAAATAAAGAA
1 AATAAAAATAAAAATAAAGAA
68240128 AAGTAAAAATAAAAAATAAAGAGA
1 AA-TAAAAAT-AAAAATAAAGA-A
68240152 AATAAAAAT
1 AATAAAAAT
68240161 TGGGTTGCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.17
20 5 0.11
21 13 0.28
23 17 0.37
24 3 0.07
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (21 bp):
AATAAAAATAAAAATAAAGAA
Found at i:68243654 original size:10 final size:10
Alignment explanation
Indices: 68243633--68243674 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
68243623 AATTAAATTC
68243633 TAAAAGATAAA
1 TAAAA-ATAAA
68243644 TAAAAATAAA
1 TAAAAATAAA
*
68243654 TAAAGATAAA
1 TAAAAATAAA
*
68243664 TGAAAATAAA
1 TAAAAATAAA
68243674 T
1 T
68243675 CCTAAAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 23 0.82
11 5 0.18
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:68243658 original size:20 final size:20
Alignment explanation
Indices: 68243635--68243674 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
68243625 TTAAATTCTA
68243635 AAAGATAAATAAAAATAAAT
1 AAAGATAAATAAAAATAAAT
*
68243655 AAAGATAAATGAAAATAAAT
1 AAAGATAAATAAAAATAAAT
68243675 CCTAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.20
Consensus pattern (20 bp):
AAAGATAAATAAAAATAAAT
Found at i:68245007 original size:7 final size:7
Alignment explanation
Indices: 68244987--68245022 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
68244977 CATAATAAAA
68244987 TAGTCATT
1 TAGT-ATT
*
68244995 TCGTATT
1 TAGTATT
68245002 TAGTATT
1 TAGTATT
68245009 TAGTATT
1 TAGTATT
68245016 TAGTATT
1 TAGTATT
68245023 ATGTATGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 23 0.88
8 3 0.12
ACGTcount: A:0.25, C:0.06, G:0.14, T:0.56
Consensus pattern (7 bp):
TAGTATT
Found at i:68245562 original size:30 final size:30
Alignment explanation
Indices: 68245521--68245586 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
68245511 TGACGATACA
* *
68245521 GGCCCATCAACAGCACCCACACAATCACCG
1 GGCCCACCAACAACACCCACACAATCACCG
* * *
68245551 GGCCCACCAACAACGCTCACACAGTCACCG
1 GGCCCACCAACAACACCCACACAATCACCG
68245581 GGCCCA
1 GGCCCA
68245587 ACACTCCAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.47, G:0.17, T:0.06
Consensus pattern (30 bp):
GGCCCACCAACAACACCCACACAATCACCG
Found at i:68246210 original size:8 final size:9
Alignment explanation
Indices: 68246194--68246223 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
68246184 TGAATAAGGC
68246194 AATATTTTT
1 AATATTTTT
68246203 AATATTTTT
1 AATATTTTT
68246212 -ATATTTTT
1 AATATTTTT
68246220 AATA
1 AATA
68246224 AAATATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
AATATTTTT
Found at i:68249425 original size:126 final size:126
Alignment explanation
Indices: 68249200--68249629 Score: 698
Period size: 126 Copynumber: 3.4 Consensus size: 126
68249190 CCAAACAGTA
* * *
68249200 ACTACTGTAGCAAAAGAGTGTCGACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
68249265 GCTTGAAGTGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
66 GCTTGAAGTGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * *
68249326 ACTACTGTAACAAAAGAGGGTCCACGTGGGAGCTTTTTTCAGTAATTTTACTAATAGTGCATCCT
1 ACTACTGTAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
* * * **
68249391 GCTTGAAGCGTTTTGGACACTATTTTTTCAGAAACGTCTTTTCAAAATTATTTTTTTTGAT
66 GCTTGAAGTGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* *
68249452 ACTACTATAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
* *
68249517 GCTTGAAGTGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATAATTTTTTCATAT
66 GCTTGAAGTGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* *
68249578 ACTACTGTAGCAAAAGAGCGTCCACGTAGAAGCTTTTTTCAGTAATTTTGCT
1 ACTACTGTAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCT
68249630 GATAGTGCTC
Statistics
Matches: 278, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 278 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (126 bp):
ACTACTGTAGCAAAAGAGGGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
GCTTGAAGTGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
Found at i:68252682 original size:24 final size:24
Alignment explanation
Indices: 68252650--68252698 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
68252640 GTTTCAATCT
68252650 TACTACACTCCTTCTATTAGAATA
1 TACTACACTCCTTCTATTAGAATA
68252674 TACTACACTCCTTCTATTAGAATA
1 TACTACACTCCTTCTATTAGAATA
68252698 T
1 T
68252699 GGTTTTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.39
Consensus pattern (24 bp):
TACTACACTCCTTCTATTAGAATA
Found at i:68255786 original size:27 final size:27
Alignment explanation
Indices: 68255756--68255873 Score: 173
Period size: 27 Copynumber: 4.4 Consensus size: 27
68255746 CCCCAAAATA
*
68255756 GGTAAAATGACCGTACTACCCTTGTAG
1 GGTAAAATGACCGTACTACCCCTGTAG
*
68255783 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTACTACCCCTGTAG
* *
68255810 GGTAAAATGACCGTAGTACCCCTATAG
1 GGTAAAATGACCGTACTACCCCTGTAG
* * *
68255837 GGTAAAATGACCGTACTACTCTTGTAT
1 GGTAAAATGACCGTACTACCCCTGTAG
68255864 GGTAAAATGA
1 GGTAAAATGA
68255874 TGATTATGCC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTACTACCCCTGTAG
Found at i:68256324 original size:28 final size:28
Alignment explanation
Indices: 68256291--68256344 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
68256281 ACTGTACTGA
68256291 TACTGAAT-AGGGCTCAGGCCCAGACTCT
1 TACTG-ATCAGGGCTCAGGCCCAGACTCT
* *
68256319 TACTGATCGGGGCTTAGGCCCAGACT
1 TACTGATCAGGGCTCAGGCCCAGACT
68256345 GTGTTATTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.09
28 21 0.91
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (28 bp):
TACTGATCAGGGCTCAGGCCCAGACTCT
Found at i:68259935 original size:27 final size:27
Alignment explanation
Indices: 68259900--68259962 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
68259890 CCCCAAAATA
* *
68259900 GGTAAAATGACCGTAATATCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTATAG
*
68259927 GGTAAAATGACCGTAATACCCCTATAT
1 GGTAAAATGACCGTAATACCCCTATAG
68259954 GGTAAAATG
1 GGTAAAATG
68259963 CTGATTATGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTATAG
Found at i:68260150 original size:27 final size:27
Alignment explanation
Indices: 68260101--68260159 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
68260091 TGGAAGAAGT
*
68260101 ACTG-TACTGGTGACTATGTCACATTC
1 ACTGTTACTGGTGACTATGCCACATTC
* * *
68260127 ACTGTTACTGGTGGCTTTGCCACATTT
1 ACTGTTACTGGTGACTATGCCACATTC
68260154 ACTGTT
1 ACTGTT
68260160 TCTGACAGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 4 0.14
27 24 0.86
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (27 bp):
ACTGTTACTGGTGACTATGCCACATTC
Found at i:68261833 original size:94 final size:89
Alignment explanation
Indices: 68261661--68261911 Score: 279
Period size: 90 Copynumber: 2.7 Consensus size: 89
68261651 AACTACAAAA
* * * * * * *
68261661 GTTGCAGGTTAATATGCTGTCAGATGGTTGTGAGTGTACAAAATATTTACAGATGAGAGCTGCCA
1 GTTGCAGGTTAATAAG-TGTCAGATGGTTGTGAATGCACAACATATTTGCAGATAAGAGCTACCA
* *
68261726 GGATATGGATGGATGAATGAACCACCAAT
65 GAAAATGGATGGATG-A-G--CCACCAAT
* * *
68261755 GTTGTAGGTTAATAAGTTGTCAGATGGTTGTGAATACACAACGTATTTGCAGATAAGAGCTACCA
1 GTTGCAGGTTAATAAG-TGTCAGATGGTTGTGAATGCACAACATATTTGCAGATAAGAGCTACCA
68261820 GAAAAT-GAGTGGATGAGCCACCAAT
65 GAAAATGGA-TGGATGAGCCACCAAT
* * * *
68261845 GTTGCAGGTTAATACAGTCTCAGATGGTTGTGAATGCATAACATAATTGCAAATAAGAGCTACCA
1 GTTGCAGGTTAATA-AGTGTCAGATGGTTGTGAATGCACAACATATTTGCAGATAAGAGCTACCA
68261910 GA
65 GA
68261912 TAATTTGAGG
Statistics
Matches: 135, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
90 65 0.48
91 2 0.01
92 1 0.01
93 3 0.02
94 64 0.47
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (89 bp):
GTTGCAGGTTAATAAGTGTCAGATGGTTGTGAATGCACAACATATTTGCAGATAAGAGCTACCAG
AAAATGGATGGATGAGCCACCAAT
Found at i:68261931 original size:90 final size:90
Alignment explanation
Indices: 68261742--68261932 Score: 249
Period size: 90 Copynumber: 2.1 Consensus size: 90
68261732 GGATGGATGA
* * * * *
68261742 ATGAACCACCAATGTTGTAGGTTAATAAGTTGTCAGATGGTTGTGAATACACAACGTATTTGCAG
1 ATGAACCACCAATGTTGCAGGTTAATAAGTTCTCAGATGGTTGTGAATACACAACATAATTGCAA
*
68261807 ATAAGAGCTACCAGAAAATGAGTGG
66 ATAAGAGCTACCAGAAAATGAGAGG
* * *
68261832 ATGAGCCACCAATGTTGCAGGTTAATACAG-TCTCAGATGGTTGTGAATGCATAACATAATTGCA
1 ATGAACCACCAATGTTGCAGGTTAATA-AGTTCTCAGATGGTTGTGAATACACAACATAATTGCA
* **
68261896 AATAAGAGCTACCAGATAATTTGAGG
65 AATAAGAGCTACCAGAAAATGAGAGG
*
68261922 ATTAACCACCA
1 ATGAACCACCA
68261933 GAGTTGTAGA
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
90 84 0.98
91 2 0.02
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (90 bp):
ATGAACCACCAATGTTGCAGGTTAATAAGTTCTCAGATGGTTGTGAATACACAACATAATTGCAA
ATAAGAGCTACCAGAAAATGAGAGG
Found at i:68268021 original size:16 final size:16
Alignment explanation
Indices: 68267977--68268015 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
68267967 AGAGAGCAGG
* *
68267977 GGAAAGAAAGAAGGAA
1 GGAAAAAAAGAAAGAA
68267993 GGAAAAAAAGAAAGAA
1 GGAAAAAAAGAAAGAA
68268009 GGAAAAA
1 GGAAAAA
68268016 GGGAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAAGAA
Found at i:68270099 original size:46 final size:46
Alignment explanation
Indices: 68270047--68270273 Score: 346
Period size: 46 Copynumber: 4.9 Consensus size: 46
68270037 GTGCTCTCTA
*
68270047 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
68270093 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATAGCAACCTA
1 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
68270139 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * *
68270185 ACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * * *
68270231 ACATGAAAAGAATAAGACCATGGTTGAAAGATACTATGGCAAC
1 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
68270274 ATGACAGAAA
Statistics
Matches: 169, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 169 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (46 bp):
ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:68270333 original size:92 final size:90
Alignment explanation
Indices: 68270059--68270321 Score: 294
Period size: 92 Copynumber: 2.8 Consensus size: 90
68270049 ATGAAATGTG
* * * *
68270059 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATAGTTGAAAGA
* * * * **
68270124 TACCATAGCAACCTAATATGAAATGTG
66 CACCATGGCAA-CT-ACATGAAAAGAA
* *
68270151 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATAGTTGAAAGA
*
68270216 TACCATGGCAACGTGACATGAAAAGAA
66 CACCATGGCAAC-T-ACATGAAAAGAA
* *
68270243 TAAGACCATGGTTGAAAGATACTATGGCAACATGACA-GAAAATGAATGAGTAATACCATAGTTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATG-A--A-TAAGACCATAGTTG
*
68270307 AAAGACACTATGGCA
61 AAAGACACCATGGCA
68270322 TCATGTCAAA
Statistics
Matches: 150, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
91 2 0.01
92 121 0.81
93 1 0.01
95 1 0.01
96 25 0.17
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (90 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATAGTTGAAAGA
CACCATGGCAACTACATGAAAAGAA
Found at i:68272556 original size:19 final size:18
Alignment explanation
Indices: 68272532--68272572 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
68272522 CATAATAGAA
*
68272532 TAATATATTCTAAAACTAT
1 TAATATA-TATAAAACTAT
*
68272551 TAATATATATATAACTAT
1 TAATATATATAAAACTAT
68272569 TAAT
1 TAAT
68272573 TGATACAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (18 bp):
TAATATATATAAAACTAT
Found at i:68273320 original size:20 final size:19
Alignment explanation
Indices: 68273283--68273326 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
68273273 AGTATATTTC
68273283 ATATAATAATAAACAATAAT
1 ATATAATAATAAACAAT-AT
* **
68273303 ATATAATGATAATTAATAT
1 ATATAATAATAAACAATAT
68273322 ATATA
1 ATATA
68273327 TTTTTAAAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATAATAATAAACAATAT
Found at i:68273457 original size:4 final size:4
Alignment explanation
Indices: 68273450--68273527 Score: 156
Period size: 4 Copynumber: 19.5 Consensus size: 4
68273440 TATGCATGCT
68273450 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
68273498 TACA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TA
68273528 ACTATTAATT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 74 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:68274887 original size:41 final size:40
Alignment explanation
Indices: 68274842--68274951 Score: 127
Period size: 37 Copynumber: 2.8 Consensus size: 40
68274832 ACTTCGAGTT
**
68274842 GATGAGACACTGGGTGTCAATTTATTACTTCGGATATATTC
1 GATGAGACACTGGGTGTCAATTTATTACTTCGG-TATAGCC
* *
68274883 GATGAGGCACTGGGTGTCAATTTA-T--TTCGGTTTAGCC
1 GATGAGACACTGGGTGTCAATTTATTACTTCGGTATAGCC
* * *
68274920 GATGAGACACTAGGAGTCAAATTATTACTTCG
1 GATGAGACACTGGGTGTCAATTTATTACTTCG
68274952 AACGATCTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
37 24 0.41
38 6 0.10
40 5 0.09
41 23 0.40
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (40 bp):
GATGAGACACTGGGTGTCAATTTATTACTTCGGTATAGCC
Found at i:68292499 original size:21 final size:22
Alignment explanation
Indices: 68292473--68292513 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
68292463 TCGATCGAAT
68292473 AAATTA-ATTAAACTGAAAATG
1 AAATTAGATTAAACTGAAAATG
*
68292494 AAATTAGATTAAGCTGAAAA
1 AAATTAGATTAAACTGAAAA
68292514 ATGGAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.56, C:0.05, G:0.12, T:0.27
Consensus pattern (22 bp):
AAATTAGATTAAACTGAAAATG
Found at i:68293245 original size:9 final size:9
Alignment explanation
Indices: 68293216--68293255 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
68293206 ATTGTATTTT
68293216 ATAATTCGA
1 ATAATTCGA
* *
68293225 ATAACTCCA
1 ATAATTCGA
*
68293234 ATAGTTCGA
1 ATAATTCGA
68293243 ATAATTCGA
1 ATAATTCGA
68293252 ATAA
1 ATAA
68293256 CAGATTGGTG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (9 bp):
ATAATTCGA
Found at i:68294445 original size:14 final size:14
Alignment explanation
Indices: 68294428--68294458 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
68294418 TAAAAAAAGA
*
68294428 ATATATAGAAAATT
1 ATATATAAAAAATT
68294442 ATATATAAAAAATT
1 ATATATAAAAAATT
68294456 ATA
1 ATA
68294459 AAATTATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (14 bp):
ATATATAAAAAATT
Found at i:68294474 original size:29 final size:28
Alignment explanation
Indices: 68294442--68294510 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
68294432 ATAGAAAATT
*
68294442 ATATATAAAAAATTATAAAATTATTAAAA
1 ATATATAAAAAATTATAAAA-TATAAAAA
***
68294471 ATATATAATTTATTATAAAATATAAAAA
1 ATATATAAAAAATTATAAAATATAAAAA
68294499 ACT-TATAAAAAA
1 A-TATATAAAAAA
68294511 ACAAAAAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
28 14 0.44
29 18 0.56
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (28 bp):
ATATATAAAAAATTATAAAATATAAAAA
Found at i:68294475 original size:17 final size:17
Alignment explanation
Indices: 68294449--68294497 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 17
68294439 ATTATATATA
68294449 AAAAATTATAAAATTATT
1 AAAAA-TATAAAATTATT
*
68294467 AAAAATATATAATTTATT
1 AAAAATATA-AAATTATT
68294485 ATAAAATATAAAA
1 A-AAAATATAAAA
68294498 AACTTATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 4 0.15
18 15 0.56
19 8 0.30
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAAATATAAAATTATT
Found at i:68295330 original size:18 final size:18
Alignment explanation
Indices: 68295294--68295332 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
68295284 TCTTTCTAGG
* *
68295294 AAAACCATTGTTTGCATA
1 AAAACCATCGTTTGAATA
*
68295312 AAAACCATCGTTTTAATA
1 AAAACCATCGTTTGAATA
68295330 AAA
1 AAA
68295333 TAATTTTACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (18 bp):
AAAACCATCGTTTGAATA
Found at i:68298236 original size:46 final size:46
Alignment explanation
Indices: 68298078--68298295 Score: 208
Period size: 46 Copynumber: 4.7 Consensus size: 46
68298068 TGTAACCCGA
** * * *
68298078 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * * * * *
68298124 CCATAAGTG-ACTCGGATTTAACTCAACGAGCTCGGATGCCTAGTTAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACG-TTCG-CAT
* * * *
68298171 ATC-TCA-CGAACTCAGACTCAAATCAACGAGTTCGGACGTTCGCAT
1 -CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
68298216 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
68298262 CCATAAGTGAACTCGGACTCAACTCAACAAGTTC
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC
68298296 AGATACCCAA
Statistics
Matches: 138, Mismatches: 28, Indels: 12
0.78 0.16 0.07
Matches are distributed among these distances:
44 1 0.01
45 29 0.21
46 80 0.58
47 27 0.20
48 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:68298274 original size:92 final size:94
Alignment explanation
Indices: 68298077--68298295 Score: 250
Period size: 92 Copynumber: 2.4 Consensus size: 94
68298067 ATGTAACCCG
* * * * *
68298077 ACCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGACTCGGATT
1 ACCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGACTCAGACT
* *
68298142 TAACTCAACGAGCTCGGATGCCTAGTTAT
66 CAACTCAACGAGCTCGGATGCCTAGTCAT
* * * *
68298171 ATC-TCA-CGAACTCAGACTCAAATCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGAC
1 ACCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTG-ACTCAGAC
* * *
68298234 TCAACTCAACGAGTTCGGATG-TTCG-CAT
65 TCAACTCAACGAGCTCGGATGCCTAGTCAT
* *
68298262 -CCATAAGTGAACTCGGACTCAACTCAACAAGTTC
1 ACCATAAGCGAACTCGGACTCAACTCAACGAGTTC
68298296 AGATACCCAA
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
90 1 0.01
91 4 0.04
92 68 0.67
93 27 0.26
94 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (94 bp):
ACCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGACTCAGACT
CAACTCAACGAGCTCGGATGCCTAGTCAT
Found at i:68304781 original size:7 final size:7
Alignment explanation
Indices: 68304769--68304794 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
68304759 TAAGGCGTTT
68304769 TATAAAA
1 TATAAAA
68304776 TATAAAA
1 TATAAAA
68304783 TATAAAA
1 TATAAAA
68304790 TATAA
1 TATAA
68304795 TATTTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TATAAAA
Found at i:68305323 original size:19 final size:20
Alignment explanation
Indices: 68305286--68305324 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
68305276 TTTTTCTCTA
*
68305286 TTTTAATAATTTTTCAATTT
1 TTTTAATAATTTATCAATTT
*
68305306 TTTTAA-AATTTATGAATTT
1 TTTTAATAATTTATCAATTT
68305325 AAAAAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTTAATAATTTATCAATTT
Found at i:68305744 original size:12 final size:12
Alignment explanation
Indices: 68305727--68305776 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
68305717 TATAAATAAA
*
68305727 TATTTTATATTT
1 TATTTTATATAT
68305739 TATTTTATATAT
1 TATTTTATATAT
*
68305751 TATATTTATAAAT
1 TAT-TTTATATAT
* *
68305764 AATATTATATAT
1 TATTTTATATAT
68305776 T
1 T
68305777 TAACATTTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
12 21 0.68
13 10 0.32
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTTTATATAT
Found at i:68308254 original size:46 final size:46
Alignment explanation
Indices: 68308195--68308358 Score: 177
Period size: 46 Copynumber: 3.5 Consensus size: 46
68308185 AGATATGTGT
* * *
68308195 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACCATATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGATGAGA
* * * *
68308241 GCCAGTGTAAGACATGCCTAGGACATGCATCGG-CATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCA-CGAGATGAGA
* * * *
68308287 ACTAGTGTAAGACATGTCTAGGACATGCATTGGCCTCGAGATAGACAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGAT-GA-GA
* *
68308335 GCTAGTGTAAGACCTGTCTGGGAC
1 GCTAGTGTAAGACATGTCTAGGAC
68308359 TTGGCGTCAA
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
45 2 0.02
46 69 0.72
47 3 0.03
48 22 0.23
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGATGAGA
Found at i:68309527 original size:25 final size:27
Alignment explanation
Indices: 68309488--68309554 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 27
68309478 ACACGGGCTA
*
68309488 GGACACGGGCATGTCAT-G-GTGTGAG
1 GGACACGAGCATGTCATGGCGTGTGAG
*
68309513 GGACACGAGCGTGTCATGGCCGTGTGAG
1 GGACACGAGCATGTCATGG-CGTGTGAG
*
68309541 GGACACGGGCATGT
1 GGACACGAGCATGT
68309555 GTCAGGCCGT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 15 0.43
26 1 0.03
28 19 0.54
ACGTcount: A:0.19, C:0.19, G:0.43, T:0.18
Consensus pattern (27 bp):
GGACACGAGCATGTCATGGCGTGTGAG
Found at i:68309544 original size:28 final size:28
Alignment explanation
Indices: 68309506--68309568 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 28
68309496 GCATGTCATG
68309506 GTGTGAGGGACACGAGC-GTGTCATGGCC
1 GTGTGAGGGACACGAGCAGTGTCA-GGCC
*
68309534 GTGTGAGGGACACGGGCATGTGTCAGGCC
1 GTGTGAGGGACACGAGCA-GTGTCAGGCC
68309563 GTGTGA
1 GTGTGA
68309569 AAACCCCTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 16 0.50
29 10 0.31
30 6 0.19
ACGTcount: A:0.17, C:0.19, G:0.44, T:0.19
Consensus pattern (28 bp):
GTGTGAGGGACACGAGCAGTGTCAGGCC
Found at i:68315692 original size:44 final size:44
Alignment explanation
Indices: 68315624--68316057 Score: 607
Period size: 44 Copynumber: 9.9 Consensus size: 44
68315614 AGATTCGTCG
* * ** *
68315624 TCTTCGATTTGCTCTTTGTAAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
* *
68315668 TCTTCGATCTGCTCTCCGCCAATACAGAGATGCCTAATCTGCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
* *
68315712 TCTTCAATCTACTCTCTGCCAATACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
* * * * *
68315756 TTTTCGACCTGTTCTTTGCCAATACAAAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
* * *
68315800 TCTTCGATCTGCTCTCCGCCAATACAGAAATGCCAAATCTGCGA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
* * *
68315844 CCTTCGATCTGCTCTCCGCTAATACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
* * * *
68315888 TCTTCGATCTGTTCTCTGCTAATACAGAGATGTCTAATCTGCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
*
68315932 TCTTCGATCTGCTCTCTGCCAATACAAAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
* *
68315976 TCTTCGATCTGCTCTCCGCCAATACAAAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
* *
68316020 TCTTCGATCTGCTCTCTGCCAATACAGAAACGCCAAAT
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAAT
68316058 TTGCAGGATT
Statistics
Matches: 345, Mismatches: 45, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 345 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTA
Found at i:68316877 original size:3 final size:3
Alignment explanation
Indices: 68316869--68316901 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
68316859 TCGGCCTCTC
68316869 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
68316902 TTTCAGAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:68331292 original size:17 final size:19
Alignment explanation
Indices: 68331260--68331294 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
68331250 TTATAGAATA
68331260 TGAACTTGATAAATGATAT
1 TGAACTTGATAAATGATAT
68331279 TGAA-TTGA-AAATGATA
1 TGAACTTGATAAATGATA
68331295 GTATGAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 4 0.25
19 4 0.25
ACGTcount: A:0.46, C:0.03, G:0.17, T:0.34
Consensus pattern (19 bp):
TGAACTTGATAAATGATAT
Found at i:68331446 original size:21 final size:22
Alignment explanation
Indices: 68331421--68331462 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
68331411 AAATGATTCG
68331421 AGATAGTGT-GAAT-AAAAGAAT
1 AGATAG-GTAGAATGAAAAGAAT
68331442 AGATAGGTAGAATGAAAAGAA
1 AGATAGGTAGAATGAAAAGAA
68331463 ATAATATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 10 0.53
22 7 0.37
ACGTcount: A:0.55, C:0.00, G:0.26, T:0.19
Consensus pattern (22 bp):
AGATAGGTAGAATGAAAAGAAT
Found at i:68332447 original size:19 final size:20
Alignment explanation
Indices: 68332419--68332469 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
68332409 AATAAAAATC
* *
68332419 GTATCGATACTCT-TATAAA
1 GTATCAATACTATATATAAA
68332438 GTATCAATACTATAATATAAA
1 GTATCAATACTAT-ATATAAA
68332459 GTATCAATACT
1 GTATCAATACT
68332470 TAAGTCTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 11 0.39
21 17 0.61
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (20 bp):
GTATCAATACTATATATAAA
Found at i:68332783 original size:32 final size:32
Alignment explanation
Indices: 68332746--68332810 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
68332736 GAAGTATACA
*
68332746 TACACACATATTTATTCATCACCCTCAATCAT
1 TACACACACATTTATTCATCACCCTCAATCAT
*
68332778 TACACATACATTTATTCATCACCCTCAATCAT
1 TACACACACATTTATTCATCACCCTCAATCAT
68332810 T
1 T
68332811 CAACCTTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.35
Consensus pattern (32 bp):
TACACACACATTTATTCATCACCCTCAATCAT
Found at i:68338794 original size:47 final size:45
Alignment explanation
Indices: 68338724--68338993 Score: 256
Period size: 47 Copynumber: 5.8 Consensus size: 45
68338714 GATAAGGTGT
* *
68338724 CGATGCCATGTCCCAGACCTGGTCTTACACTGGCTCATATCTCAAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATATCTCAAGC
* * *
68338771 CGATGCCATGTCCCAGATATGGTCTTACACTGACT-ATCATCTCTTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCAT-ATCTC-AAGC
* * *
68338819 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCATATCTC-AAGC
* *
68338865 CGATGCATGTCCCAGACATGTCTTACACTAGCTC-TCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCAT-ATCTCAA-GC
** * * * *
68338911 TAATGTCATGTCCTAGACATGGTCTTACACTGGCTCTTATAATCTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATAT-CTCAAGC
* *
68338959 CGATGCATGTCCCAGACATGCCTTACACTAGCTCA
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCA
68338994 CACACAAATG
Statistics
Matches: 185, Mismatches: 29, Indels: 19
0.79 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 76 0.41
47 77 0.42
48 27 0.15
49 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCATATCTCAAGC
Found at i:68338961 original size:94 final size:92
Alignment explanation
Indices: 68338730--68338992 Score: 284
Period size: 94 Copynumber: 2.8 Consensus size: 92
68338720 GTGTCGATGC
* * * * * *
68338730 CATGTCCCAGACCTGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGATATGGTC
1 CATGTCCCAGACATGGTCTTACACTGGCTCTTATATCTAGCCGATG-CATGTCCCAGACAT-GTC
* * *
68338795 TTACACT-GACTATCATCTCTTAGCCGATG
64 TTACACTAG-CTCTCATCTCATAGCCAATG
*
68338824 CATGTCCCAGACAT-GTCTTACACTGG--CTTACATCTCGAGGCCGATGCATGTCCCAGACATGT
1 CATGTCCCAGACATGGTCTTACACTGGCTCTTATATCT--A-GCCGATGCATGTCCCAGACATGT
* *
68338886 CTTACACTAGCTCTCGTCTCA-ATGCTAATG
63 CTTACACTAGCTCTCATCTCATA-GCCAATG
* *
68338916 TCATGTCCTAGACATGGTCTTACACTGGCTCTTATAATCTAGCCGATGCATGTCCCAGACATGCC
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTTAT-ATCTAGCCGATGCATGTCCCAGACATGTC
68338981 TTACACTAGCTC
64 TTACACTAGCTC
68338993 ACACACAAAT
Statistics
Matches: 144, Mismatches: 15, Indels: 20
0.80 0.08 0.11
Matches are distributed among these distances:
91 6 0.04
92 23 0.16
93 40 0.28
94 66 0.46
95 1 0.01
96 4 0.03
97 4 0.03
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (92 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTTATATCTAGCCGATGCATGTCCCAGACATGTCTT
ACACTAGCTCTCATCTCATAGCCAATG
Found at i:68338984 original size:140 final size:141
Alignment explanation
Indices: 68338724--68338987 Score: 349
Period size: 140 Copynumber: 1.9 Consensus size: 141
68338714 GATAAGGTGT
* * * *
68338724 CGATGCCATGTCCCAGACCTGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCAATGCCATGTCCCAGAC
* *
68338789 ATGGTCTTACACTGACTATCATCTCTTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
66 ATGGTCTTACACTGACTATCATATCTTAGCCGATGCATGTCCCAGACATGCCTTACACTGGCTTA
68338854 CATCTCGAGGC
131 CATCTCGAGGC
* * *
68338865 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAA-TGCTAATGTCATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAAGT-C-AATGCCATGTCCCA
* * *
68338926 GACATGGTCTTACACTGGCTCTTATAATC-TAGCCGATGCATGTCCCAGACATGCCTTACACT
63 GACATGGTCTTACACTGACTATCAT-ATCTTAGCCGATGCATGTCCCAGACATGCCTTACACT
68338988 AGCTCACACA
Statistics
Matches: 107, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
138 2 0.02
139 21 0.20
140 77 0.72
141 7 0.07
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCAATGCCATGTCCCAGAC
ATGGTCTTACACTGACTATCATATCTTAGCCGATGCATGTCCCAGACATGCCTTACACTGGCTTA
CATCTCGAGGC
Found at i:68343453 original size:46 final size:46
Alignment explanation
Indices: 68343397--68343623 Score: 221
Period size: 46 Copynumber: 4.8 Consensus size: 46
68343387 TGGTTGAGCA
*
68343397 TCCGAACTCGTTGAGTTGAGTCTGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
68343443 TCCGAACTCGTTGAGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTC-----GTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
* *
68343494 TCCGAACTCGTTGAGTTGAGTCCGAG-TT-C-GA-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATG-GATGCGAA-T--G
* * * * *
68343539 CATCTGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
* * *
68343587 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGG
68343624 GCGGGTTACA
Statistics
Matches: 152, Mismatches: 13, Indels: 32
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.02
43 6 0.04
44 1 0.01
45 3 0.02
46 60 0.39
47 23 0.15
48 2 0.01
49 1 0.01
50 5 0.03
51 48 0.32
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
Found at i:68343478 original size:51 final size:51
Alignment explanation
Indices: 68343406--68343514 Score: 209
Period size: 51 Copynumber: 2.1 Consensus size: 51
68343396 ATCCGAACTC
*
68343406 GTTGAGTTGAGTCTGAGTTTACTTATGGATGCGAATGTCCGAACTCGTTGA
1 GTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTCCGAACTCGTTGA
68343457 GTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTCCGAACTCGTTGA
1 GTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTCCGAACTCGTTGA
68343508 GTTGAGT
1 GTTGAGT
68343515 CCGAGTTCGA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.21, C:0.14, G:0.30, T:0.35
Consensus pattern (51 bp):
GTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTCCGAACTCGTTGA
Found at i:68347824 original size:59 final size:58
Alignment explanation
Indices: 68347723--68347834 Score: 152
Period size: 59 Copynumber: 1.9 Consensus size: 58
68347713 GTACATAGCA
** * * *
68347723 TAAGACCATGGATGAAAGATGCCATGGCGGCATGGTACAAGGTAAAAGGGTATATGGCG
1 TAAGACCATGGATGAAAGACACCATGACGACACGGTACAAGGTAAAA-GGTATATGGCG
* *
68347782 TAAGACCATGGATGAAAGACATCATGACGACACGGTATAAGGTAAAAGGTATA
1 TAAGACCATGGATGAAAGACACCATGACGACACGGTACAAGGTAAAAGGTATA
68347835 AGATATACAT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
58 6 0.13
59 40 0.87
ACGTcount: A:0.38, C:0.13, G:0.29, T:0.19
Consensus pattern (58 bp):
TAAGACCATGGATGAAAGACACCATGACGACACGGTACAAGGTAAAAGGTATATGGCG
Found at i:68351107 original size:20 final size:21
Alignment explanation
Indices: 68351071--68351111 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
68351061 TATTATTTAA
68351071 ATATATATATACGTATATTTT
1 ATATATATATACGTATATTTT
*
68351092 ATATAT-TATGCGTATATTTT
1 ATATATATATACGTATATTTT
68351112 GTTTTGTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (21 bp):
ATATATATATACGTATATTTT
Found at i:68351538 original size:14 final size:12
Alignment explanation
Indices: 68351511--68351536 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68351501 TTGTATTTGG
68351511 TAACATTTTTTA
1 TAACATTTTTTA
68351523 TAACATTTTTTA
1 TAACATTTTTTA
68351535 TA
1 TA
68351537 TATTGTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (12 bp):
TAACATTTTTTA
Found at i:68363497 original size:42 final size:42
Alignment explanation
Indices: 68363358--68363508 Score: 131
Period size: 43 Copynumber: 3.5 Consensus size: 42
68363348 AAGCTTTAAC
* * * * **
68363358 CCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATATTATT
1 CCCCTAAGCAGTAGGGTAAC-AGGTCAAGTTTACAGAT-CTAAA
* * * * * * * *
68363402 GCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAA
1 CCCCTAAGCAGTAGGGTAACAGGTCAAGTTTACAGATC-TAAA
*
68363445 CCCCTAAGCAGTAGGGTAACAGGTTAAGTTTACAGATCTAAA
1 CCCCTAAGCAGTAGGGTAACAGGTCAAGTTTACAGATCTAAA
*
68363487 CCCCTAAGCAGTAGGGAAACAG
1 CCCCTAAGCAGTAGGGTAACAG
68363509 ATCATTGATG
Statistics
Matches: 82, Mismatches: 24, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
42 25 0.30
43 39 0.48
44 18 0.22
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (42 bp):
CCCCTAAGCAGTAGGGTAACAGGTCAAGTTTACAGATCTAAA
Found at i:68363652 original size:42 final size:42
Alignment explanation
Indices: 68363600--68363686 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
68363590 GAGCAGCTAA
68363600 AAGCCACAGCAAATCTCCTTGAAGTTTCAGTGGAATTGATCG
1 AAGCCACAGCAAATCTCCTTGAAGTTTCAGTGGAATTGATCG
* * *
68363642 AAGCTACAGCAGATCTCCTTGAAGTTTCAGTGGAATTGATTG
1 AAGCCACAGCAAATCTCCTTGAAGTTTCAGTGGAATTGATCG
68363684 AAG
1 AAG
68363687 TCACGTGTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (42 bp):
AAGCCACAGCAAATCTCCTTGAAGTTTCAGTGGAATTGATCG
Found at i:68363684 original size:21 final size:21
Alignment explanation
Indices: 68363618--68363687 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
68363608 GCAAATCTCC
68363618 TTGAAGTTTCAGTGGAATTGA
1 TTGAAGTTTCAGTGGAATTGA
* * * ** **
68363639 TCGAAGCTACAGCAG-ATCTCC
1 TTGAAGTTTCAGTGGAAT-TGA
68363660 TTGAAGTTTCAGTGGAATTGA
1 TTGAAGTTTCAGTGGAATTGA
68363681 TTGAAGT
1 TTGAAGT
68363688 CACGTGTCTT
Statistics
Matches: 33, Mismatches: 14, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
20 2 0.06
21 29 0.88
22 2 0.06
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (21 bp):
TTGAAGTTTCAGTGGAATTGA
Found at i:68365358 original size:19 final size:20
Alignment explanation
Indices: 68365334--68365372 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
68365324 TATTATGTAA
68365334 ATATA-TATACGTATATTTT
1 ATATATTATACGTATATTTT
*
68365353 ATATATTATGCGTATATTTT
1 ATATATTATACGTATATTTT
68365373 GTTTTGTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (20 bp):
ATATATTATACGTATATTTT
Found at i:68365799 original size:14 final size:12
Alignment explanation
Indices: 68365772--68365797 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68365762 TTGTATTTGG
68365772 TAACATTTTTTA
1 TAACATTTTTTA
68365784 TAACATTTTTTA
1 TAACATTTTTTA
68365796 TA
1 TA
68365798 TATTGTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (12 bp):
TAACATTTTTTA
Found at i:68368066 original size:46 final size:46
Alignment explanation
Indices: 68367998--68368193 Score: 204
Period size: 46 Copynumber: 4.2 Consensus size: 46
68367988 TCGATGCATG
* *
68367998 GTCTTACACTGACTATCATCTCGTA-GCCGATGTATGTCCCAGACAT
1 GTCTTACACTGGCT-TCATCTCGTAGGCCGATGCATGTCCCAGACAT
*
68368044 GTCTTACACTGGCTTACGTCTCG-AGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTGGCTT-CATCTCGTAGGCCGATGCATGTCCCAGACAT
* * * * *
68368090 GTCTTACACTAGCCCTCGTCTC-AATGCCGATGCCATGTCCCAGACAT
1 GTCTTACACT-GGCTTCATCTCGTAGGCCGATG-CATGTCCCAGACAT
* *
68368137 GGTCTTACACTGGCTCTCATAAT-GT-GGTCGATGCATGTCCCAGACAT
1 -GTCTTACACTGGCT-TCAT-CTCGTAGGCCGATGCATGTCCCAGACAT
68368184 GTCTTACACT
1 GTCTTACACT
68368194 AGCTCACACA
Statistics
Matches: 128, Mismatches: 13, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
45 2 0.02
46 73 0.57
47 33 0.26
48 19 0.15
49 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (46 bp):
GTCTTACACTGGCTTCATCTCGTAGGCCGATGCATGTCCCAGACAT
Found at i:68368169 original size:94 final size:92
Alignment explanation
Indices: 68368023--68368196 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 92
68368013 TCATCTCGTA
* * *
68368023 GCCGATGTATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCAGAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAGAC
68368088 ATGTCTTACACTAGCCCTCGTCTCAAT
66 ATGTCTTACACTAGCCCTCGTCTCAAT
* *
68368115 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGTCGATGCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCGATGCATGTCCC
68368178 AGACATGTCTTACACTAGC
62 AGACATGTCTTACACTAGC
68368197 TCACACACGA
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
92 7 0.10
93 13 0.18
94 51 0.70
95 2 0.03
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.27
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCCCTCGTCTCAAT
Found at i:68371785 original size:88 final size:88
Alignment explanation
Indices: 68371636--68371811 Score: 334
Period size: 88 Copynumber: 2.0 Consensus size: 88
68371626 CTTAATCCCT
**
68371636 GTAAATTGAAAAACGTTATTTTAGACTTAATTGAATTTACAAAATTGGAATGAAACAAGACAAAA
1 GTAAATTGAAAAACGTTATTTTAGACTTAATTGAATTTACAAAATTAAAATGAAACAAGACAAAA
68371701 AAAGTTTGATGATCAATTAAGAC
66 AAAGTTTGATGATCAATTAAGAC
68371724 GTAAATTGAAAAACGTTATTTTAGACTTAATTGAATTTACAAAATTAAAATGAAACAAGACAAAA
1 GTAAATTGAAAAACGTTATTTTAGACTTAATTGAATTTACAAAATTAAAATGAAACAAGACAAAA
68371789 AAAGTTTGATGATCAATTAAGAC
66 AAAGTTTGATGATCAATTAAGAC
68371812 ATTAAAACAA
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.49, C:0.08, G:0.14, T:0.30
Consensus pattern (88 bp):
GTAAATTGAAAAACGTTATTTTAGACTTAATTGAATTTACAAAATTAAAATGAAACAAGACAAAA
AAAGTTTGATGATCAATTAAGAC
Found at i:68379368 original size:22 final size:22
Alignment explanation
Indices: 68379337--68379381 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
68379327 TTGAAAGAGA
* *
68379337 AAAGATATTAGAATAATCCTGG
1 AAAGAGATTAGAACAATCCTGG
68379359 AAAGAGATTAGAACAATCCTGG
1 AAAGAGATTAGAACAATCCTGG
68379381 A
1 A
68379382 TTTTATGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.11, G:0.20, T:0.22
Consensus pattern (22 bp):
AAAGAGATTAGAACAATCCTGG
Found at i:68380162 original size:10 final size:10
Alignment explanation
Indices: 68380141--68380169 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
68380131 TGTCCTCAAG
68380141 CAAACT-AAA
1 CAAACTAAAA
68380150 CAAACTAAAA
1 CAAACTAAAA
68380160 CAAACTAAAA
1 CAAACTAAAA
68380170 ATAGAGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.32
10 13 0.68
ACGTcount: A:0.69, C:0.21, G:0.00, T:0.10
Consensus pattern (10 bp):
CAAACTAAAA
Found at i:68381739 original size:19 final size:21
Alignment explanation
Indices: 68381717--68381760 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
68381707 TAAAATGTCC
68381717 AAATTTAAA-TAAAAT-TTTA
1 AAATTTAAATTAAAATGTTTA
*
68381736 AAA-TTAAATTAAATTGTTTA
1 AAATTTAAATTAAAATGTTTA
68381756 AAATT
1 AAATT
68381761 ATTCTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.24
19 8 0.38
20 7 0.33
21 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
AAATTTAAATTAAAATGTTTA
Found at i:68381744 original size:18 final size:20
Alignment explanation
Indices: 68381702--68381761 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
68381692 TAAATAAGAA
* ** *
68381702 TAAAATAAAATGTCCAAATT
1 TAAATTAAAATGTTTAAAAT
68381722 TAAA-TAAAAT-TTTAAAAT
1 TAAATTAAAATGTTTAAAAT
*
68381740 TAAATTAAATTGTTTAAAAT
1 TAAATTAAAATGTTTAAAAT
68381760 TA
1 TA
68381762 TTCTAAATCA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
18 9 0.26
19 11 0.32
20 14 0.41
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (20 bp):
TAAATTAAAATGTTTAAAAT
Found at i:68383273 original size:14 final size:14
Alignment explanation
Indices: 68383250--68383280 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
68383240 ATTTAATAAA
68383250 TAAAAATAAAAATC
1 TAAAAATAAAAATC
*
68383264 TAAAAGTAAAAATC
1 TAAAAATAAAAATC
68383278 TAA
1 TAA
68383281 TAAAACTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.23
Consensus pattern (14 bp):
TAAAAATAAAAATC
Found at i:68383456 original size:7 final size:7
Alignment explanation
Indices: 68383444--68383478 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
68383434 TATCATAGCT
68383444 GCTGGAG
1 GCTGGAG
68383451 GCTGGAG
1 GCTGGAG
68383458 GCTGGAG
1 GCTGGAG
68383465 GCTGGAG
1 GCTGGAG
68383472 GCTGGAG
1 GCTGGAG
68383479 CTACGGCTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.14, C:0.14, G:0.57, T:0.14
Consensus pattern (7 bp):
GCTGGAG
Found at i:68402559 original size:4 final size:4
Alignment explanation
Indices: 68402550--68403028 Score: 958
Period size: 4 Copynumber: 119.8 Consensus size: 4
68402540 TTACTACTAA
68402550 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
68402598 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
68402646 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
68402694 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
68402742 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
68402790 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
68402838 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
68402886 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
68402934 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
68402982 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
68403029 TTTTTAAGAA
Statistics
Matches: 475, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 475 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:68411402 original size:39 final size:39
Alignment explanation
Indices: 68411347--68411490 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
68411337 CCAACATAAT
*
68411347 TGCCTTCGGGACTTAGCCTGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
68411386 TGCCTTCGGGATTTAGCCCGGATATAACACCAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
68411425 TGCCTTCGGGACATAGCCCGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
68411464 TGCCTTCGGGACTTAGCTCAGATATAA
1 TGCCTTCGGGACTTAGCCCGGATATAA
68411491 ATCTCACACA
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 96 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:68414869 original size:23 final size:23
Alignment explanation
Indices: 68414787--68414873 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
68414777 CCTGATCAGT
*
68414787 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
68414809 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
68414829 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
* *
68414852 ATATGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
68414874 TTAGTAAATC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.63
22 1 0.02
23 18 0.33
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:68415268 original size:15 final size:15
Alignment explanation
Indices: 68415243--68415300 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
68415233 TCATATATAT
68415243 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
68415259 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
68415274 AATAATTTCAATCAA
1 TATAAATTCAATCAA
68415289 TATAAATTCAAT
1 TATAAATTCAAT
68415301 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:68415631 original size:5 final size:5
Alignment explanation
Indices: 68415623--68415674 Score: 104
Period size: 5 Copynumber: 10.4 Consensus size: 5
68415613 TCTTTAGTTT
68415623 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
68415673 AT
1 AT
68415675 TAAAACATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:68415710 original size:8 final size:8
Alignment explanation
Indices: 68415697--68415725 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
68415687 TATTTTTATT
68415697 ATATAATA
1 ATATAATA
68415705 ATATAATA
1 ATATAATA
68415713 ATATAATA
1 ATATAATA
68415721 ATATA
1 ATATA
68415726 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:68420191 original size:23 final size:22
Alignment explanation
Indices: 68420123--68420197 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
68420113 CCTGATCAGT
** *
68420123 ATACGACACATAAAGTGCCTAA
1 ATACGACACACGAGGTGCCTAA
*
68420145 A-ACGACACACGAGGTGCCT-G
1 ATACGACACACGAGGTGCCTAA
68420165 ATACGACACACGAGGTGCCTAAA
1 ATACGACACACGAGGTGCCT-AA
68420188 ATACGACACA
1 ATACGACACA
68420198 TAAAGTACCT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.02
21 33 0.73
22 1 0.02
23 10 0.22
ACGTcount: A:0.40, C:0.27, G:0.20, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTAA
Found at i:68420605 original size:15 final size:15
Alignment explanation
Indices: 68420580--68420637 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
68420570 TCATATATAT
68420580 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
68420596 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
68420611 AATAATTTCAATCAA
1 TATAAATTCAATCAA
68420626 TATAAATTCAAT
1 TATAAATTCAAT
68420638 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:68420968 original size:5 final size:5
Alignment explanation
Indices: 68420960--68420996 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
68420950 TCTTTAGTTT
68420960 ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT
68420997 TAAAACATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:68421032 original size:8 final size:8
Alignment explanation
Indices: 68421019--68421047 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
68421009 TATTTTTATT
68421019 ATATAATA
1 ATATAATA
68421027 ATATAATA
1 ATATAATA
68421035 ATATAATA
1 ATATAATA
68421043 ATATA
1 ATATA
68421048 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:68423860 original size:20 final size:20
Alignment explanation
Indices: 68423821--68423860 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
68423811 AATTTTGAAT
* *
68423821 TATTTTATTATACTTTTTAA
1 TATTTTATTATAATTATTAA
*
68423841 TATTTTTTTATAATTATTAA
1 TATTTTATTATAATTATTAA
68423861 ACAATTTGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (20 bp):
TATTTTATTATAATTATTAA
Found at i:68430834 original size:32 final size:31
Alignment explanation
Indices: 68430758--68430840 Score: 76
Period size: 32 Copynumber: 2.6 Consensus size: 31
68430748 TTTTCATTGA
* *
68430758 AAAAATATTAATTTGACTCTTTTTTAAAAGGTT
1 AAAAAT-TAAATTTGACT-TTTTTTAAAAAGTT
* ** *
68430791 GATGATCAAATTTGACTTTTTTTAAAAAAGTT
1 AAAAATTAAATTTGACTTTTTTT-AAAAAGTT
*
68430823 AAAAATTAAATTTAACTT
1 AAAAATTAAATTTGACTT
68430841 CAAAAAGAAA
Statistics
Matches: 38, Mismatches: 11, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
31 6 0.16
32 29 0.76
33 3 0.08
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.43
Consensus pattern (31 bp):
AAAAATTAAATTTGACTTTTTTTAAAAAGTT
Found at i:68436327 original size:96 final size:96
Alignment explanation
Indices: 68436163--68436336 Score: 269
Period size: 96 Copynumber: 1.8 Consensus size: 96
68436153 AGAAAATCTA
* * * * *
68436163 TCATCGAAAGGAATGATGGAGTAGACAATGAGCTCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCC
1 TCATCGAAAGGAACGATAGAATAGACAAAGAGCTCAAGAAGCTTAGTTCGAGCAAGGGAAAAGCC
*
68436228 GAAGCTAAGAGGGTAAAGAGGAACAAGTCTG
66 GAAGCCAAGAGGGTAAAGAGGAACAAGTCTG
*
68436259 TCATCGAAGGGAACGATAGAATAGACAAAGAG-TCTAAGAAGCTTAGTTCGAGCAAGGGAAAAGC
1 TCATCGAAAGGAACGATAGAATAGACAAAGAGCTC-AAGAAGCTTAGTTCGAGCAAGGGAAAAGC
68436323 CGAAGCCAAGAGGG
65 CGAAGCCAAGAGGG
68436337 CAAAAATGAG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
95 2 0.03
96 68 0.97
ACGTcount: A:0.40, C:0.14, G:0.32, T:0.14
Consensus pattern (96 bp):
TCATCGAAAGGAACGATAGAATAGACAAAGAGCTCAAGAAGCTTAGTTCGAGCAAGGGAAAAGCC
GAAGCCAAGAGGGTAAAGAGGAACAAGTCTG
Found at i:68459395 original size:42 final size:42
Alignment explanation
Indices: 68459333--68459415 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
68459323 CTGAACTTTA
68459333 CCGAGAGATAACAGTCGCTGGATTTTGTGACCACATTCAACG
1 CCGAGAGATAACAGTCGCTGGATTTTGTGACCACATTCAACG
* * * * *
68459375 CCGAGAGATACCATTTGCTGGATTTTGTGGCTACATTCAAC
1 CCGAGAGATAACAGTCGCTGGATTTTGTGACCACATTCAAC
68459416 AATGACAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (42 bp):
CCGAGAGATAACAGTCGCTGGATTTTGTGACCACATTCAACG
Found at i:68468770 original size:24 final size:23
Alignment explanation
Indices: 68468722--68468770 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
68468712 TATGGGAAGC
* **
68468722 AAAAAAATTATTTTGAAAAGTTA
1 AAAAAAATTATTTTAAAAAAATA
68468745 AAAATAAATTATTTTAAAAAAATA
1 AAAA-AAATTATTTTAAAAAAATA
68468769 AA
1 AA
68468771 TTTAATTGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAAAAATTATTTTAAAAAAATA
Found at i:68469266 original size:16 final size:17
Alignment explanation
Indices: 68469233--68469267 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
68469223 ATTACTTTTA
*
68469233 AAAAGTATTTCTTAAAC
1 AAAAGTATTTCCTAAAC
68469250 AAAAGTA-TTCCTAAAC
1 AAAAGTATTTCCTAAAC
68469266 AA
1 AA
68469268 TCTACTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.51, C:0.14, G:0.06, T:0.29
Consensus pattern (17 bp):
AAAAGTATTTCCTAAAC
Found at i:68470996 original size:16 final size:16
Alignment explanation
Indices: 68470975--68471008 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
68470965 TCAAAATATT
68470975 TTAAATT-TATATTTAA
1 TTAAATTATAT-TTTAA
68470991 TTAAATTATATTTTAA
1 TTAAATTATATTTTAA
68471007 TT
1 TT
68471009 CAAGTAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTAAATTATATTTTAA
Found at i:68471032 original size:26 final size:25
Alignment explanation
Indices: 68470944--68471032 Score: 81
Period size: 26 Copynumber: 3.4 Consensus size: 25
68470934 AAATTAAATT
68470944 ATATTTTAATTCAAGTAAAAATCAAA
1 ATATTTTAATTCAAGT-AAAATCAAA
* ** *
68470970 ATATTTTAAATTTATA-TTTAATTAAA
1 ATATTTT-AATTCA-AGTAAAATCAAA
68470996 TTATATTTTAATTCAAGTAAAACTCAAA
1 --ATATTTTAATTCAAGTAAAA-TCAAA
68471024 ATATTTTAA
1 ATATTTTAA
68471033 ATTTATATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
26 23 0.47
27 14 0.29
28 12 0.24
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (25 bp):
ATATTTTAATTCAAGTAAAATCAAA
Found at i:68471041 original size:54 final size:54
Alignment explanation
Indices: 68470917--68471055 Score: 215
Period size: 54 Copynumber: 2.6 Consensus size: 54
68470907 ATTGAAGATT
* * **
68470917 TATTTTTAGTTTATATAAAATTAAATTATATTTTAATTCAAGTAAAAATCAAAA
1 TATTTTAAATTTATATTTAATTAAATTATATTTTAATTCAAGTAAAAATCAAAA
*
68470971 TATTTTAAATTTATATTTAATTAAATTATATTTTAATTCAAGTAAAACTCAAAA
1 TATTTTAAATTTATATTTAATTAAATTATATTTTAATTCAAGTAAAAATCAAAA
* *
68471025 TATTTTAAATTTATATTTAATTTATTTATAT
1 TATTTTAAATTTATATTTAATTAAATTATAT
68471056 ATTATATCTT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.50
Consensus pattern (54 bp):
TATTTTAAATTTATATTTAATTAAATTATATTTTAATTCAAGTAAAAATCAAAA
Found at i:68472422 original size:20 final size:20
Alignment explanation
Indices: 68472397--68472441 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
68472387 TAATTTATTT
*
68472397 TATTT-ATTCAATTTTCATTA
1 TATTTAATTAAATTTTCA-TA
*
68472417 TATTTAATTAAATTTTTATA
1 TATTTAATTAAATTTTCATA
68472437 TATTT
1 TATTT
68472442 TAGTTTAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTAATTAAATTTTCATA
Found at i:68476959 original size:19 final size:18
Alignment explanation
Indices: 68476908--68476963 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
68476898 TGAAAATAAA
68476908 TATAATTG-TAATAATTT
1 TATAATTGTTAATAATTT
*
68476925 T-TAATCAT-TTATTAATTT
1 TATAAT--TGTTAATAATTT
68476943 TATAATTGTTAAATAATTT
1 TATAATTGTT-AATAATTT
68476962 TA
1 TA
68476964 AAAATTTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
16 4 0.13
17 2 0.06
18 12 0.39
19 13 0.42
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (18 bp):
TATAATTGTTAATAATTT
Found at i:68477108 original size:21 final size:21
Alignment explanation
Indices: 68477075--68477126 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
68477065 TGCTGTTTCT
** *
68477075 AATCTCATTGCTACAATACCC
1 AATCTCACCGCTACAATAACC
* *
68477096 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
68477117 AATCTCACCG
1 AATCTCACCG
68477127 TCACCGCTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.35, G:0.08, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:68494611 original size:51 final size:52
Alignment explanation
Indices: 68494535--68494654 Score: 174
Period size: 51 Copynumber: 2.3 Consensus size: 52
68494525 CTCAAACTTA
*
68494535 CTTCATACTTCATCC-G-ATACTATTACCTTGTTGCTCTAACTTCAACAAGAG
1 CTTCATATTTCATCCGGAATAC-ATTACCTTGTTGCTCTAACTTCAACAAGAG
* *
68494586 CTTCATATTTCATCCGGAATA-ATTACTTTGTTGCTCTAGCTTCAACAAGAG
1 CTTCATATTTCATCCGGAATACATTACCTTGTTGCTCTAACTTCAACAAGAG
*
68494637 CTTCATATTTTATCCGGA
1 CTTCATATTTCATCCGGA
68494655 TAACTTAGTT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
51 59 0.94
52 1 0.02
53 3 0.05
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.38
Consensus pattern (52 bp):
CTTCATATTTCATCCGGAATACATTACCTTGTTGCTCTAACTTCAACAAGAG
Found at i:68497488 original size:16 final size:17
Alignment explanation
Indices: 68497458--68497489 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68497448 AAGCATGAAC
68497458 AATTTCATGCTTAACTA
1 AATTTCATGCTTAACTA
68497475 AATTTCAT-CTTAACT
1 AATTTCATGCTTAACT
68497490 TTAGGCCGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.34, C:0.19, G:0.03, T:0.44
Consensus pattern (17 bp):
AATTTCATGCTTAACTA
Found at i:68509938 original size:20 final size:20
Alignment explanation
Indices: 68509906--68509943 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
68509896 TGTTTCACAT
68509906 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
68509926 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
68509944 ACTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:68510319 original size:6 final size:6
Alignment explanation
Indices: 68510308--68510334 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
68510298 TAATTCATAC
68510308 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
68510335 CATCATTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:68510461 original size:18 final size:18
Alignment explanation
Indices: 68510438--68510476 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
68510428 TACTTTTCTC
68510438 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
68510456 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
68510474 TTT
1 TTT
68510477 TTTTTATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:68511051 original size:24 final size:24
Alignment explanation
Indices: 68510999--68511043 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
68510989 ATTACCATAC
68510999 ATAA-AATTAAAATTCAGCAATTA
1 ATAATAATTAAAATTCAGCAATTA
68511022 ATAATAATTAAAATT-AG-AATTA
1 ATAATAATTAAAATTCAGCAATTA
68511044 TAGTAATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.24
23 6 0.29
24 10 0.48
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (24 bp):
ATAATAATTAAAATTCAGCAATTA
Found at i:68515121 original size:105 final size:105
Alignment explanation
Indices: 68514944--68515140 Score: 263
Period size: 105 Copynumber: 1.9 Consensus size: 105
68514934 AATGTTTAAA
* * * * *
68514944 TGTAAGACCATAGCTGGGCTATGGCATTTTAGTGAAAAGACCATAACTGGGTTATGGCACCATGA
1 TGTAAGACCATAGCTAGGCTATGACATCTGAGTGAAAAGACCATAACTGGGTTATGGCACCATCA
*
68515009 ACATAAGACCATGGTTGGACCATGGCAGTATATCTATGTG
66 ACATAAGACCATGGTAGGACCATGGCAGTATATCTATGTG
* **
68515049 TGTAAGACCATAGCTAGGCTATGACATCCTGA-TGATAAGACCATAACTGGGTTATGGCATTA-C
1 TGTAAGACCATAGCTAGGCTATGACAT-CTGAGTGAAAAGACCATAACTGGGTTATGGCACCATC
**
68515112 AAGTGTAAGACCATGGTAGGACCATGGCA
65 AA-CATAAGACCATGGTAGGACCATGGCA
68515141 ATTGTGTAAG
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
104 2 0.03
105 75 0.95
106 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (105 bp):
TGTAAGACCATAGCTAGGCTATGACATCTGAGTGAAAAGACCATAACTGGGTTATGGCACCATCA
ACATAAGACCATGGTAGGACCATGGCAGTATATCTATGTG
Found at i:68515150 original size:30 final size:30
Alignment explanation
Indices: 68515114--68515170 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
68515104 GGCATTACAA
*
68515114 GTGTAAGACCATGGTAGGACCATGGCAATT
1 GTGTAAGACCATAGTAGGACCATGGCAATT
* *
68515144 GTGTAAGACCATAGTTGGACTATGGCA
1 GTGTAAGACCATAGTAGGACCATGGCA
68515171 TCAAGAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (30 bp):
GTGTAAGACCATAGTAGGACCATGGCAATT
Found at i:68523563 original size:22 final size:22
Alignment explanation
Indices: 68523537--68523578 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
68523527 TTTACAGAAA
* *
68523537 AGAAGATAGAAAGAAAGAAAGG
1 AGAAGAAAGAAAAAAAGAAAGG
68523559 AGAAGAAAGAAAAAAAGAAA
1 AGAAGAAAGAAAAAAAGAAA
68523579 AAGGTTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.02
Consensus pattern (22 bp):
AGAAGAAAGAAAAAAAGAAAGG
Found at i:68530211 original size:79 final size:81
Alignment explanation
Indices: 68530087--68530270 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
68530077 GCTACTCGTT
* *
68530087 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
68530150 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
68530166 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
68530229 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
68530246 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68530271 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:68530270 original size:40 final size:40
Alignment explanation
Indices: 68530068--68530270 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
68530058 CGGAATTTAA
** *
68530068 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68530108 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
68530147 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68530186 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
68530226 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
68530266 CCGGA
1 CCGGA
68530271 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:68532237 original size:22 final size:25
Alignment explanation
Indices: 68532211--68532255 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68532201 TAAATTACCT
68532211 TTTCTTT-TTT-T-TCTTCTTCTCC
1 TTTCTTTCTTTCTATCTTCTTCTCC
68532233 TTTCTTTCTTTCTATCTTCTTCT
1 TTTCTTTCTTTCTATCTTCTTCT
68532256 TCTGTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 3 0.15
24 1 0.05
25 9 0.45
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTCTTTCTTTCTATCTTCTTCTCC
Found at i:68532374 original size:27 final size:27
Alignment explanation
Indices: 68532344--68532402 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
68532334 GAAAAAGGCA
68532344 CCACCGGTGCCGCCTGTGGGGTACCCT
1 CCACCGGTGCCGCCTGTGGGGTACCCT
*
68532371 CCACTGGTGCCGCCTGTGGGGTACCCT
1 CCACCGGTGCCGCCTGTGGGGTACCCT
*
68532398 TCACC
1 CCACC
68532403 CCTATTTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.08, C:0.41, G:0.31, T:0.20
Consensus pattern (27 bp):
CCACCGGTGCCGCCTGTGGGGTACCCT
Found at i:68534723 original size:19 final size:19
Alignment explanation
Indices: 68534687--68534723 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
68534677 AGAAAGGAGG
* *
68534687 AGAAGAAGAAGAAGAAGGA
1 AGAAGAAGAAAAAAAAGGA
68534706 AGAAGAAGAAAAAAAAGG
1 AGAAGAAGAAAAAAAAGG
68534724 TAATGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (19 bp):
AGAAGAAGAAAAAAAAGGA
Done.