Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 208 of 253
Found at i:68535117 original size:115 final size:115
Alignment explanation
Indices: 68534985--68535430 Score: 695
Period size: 115 Copynumber: 3.9 Consensus size: 115
68534975 AATTATAGTT
* *
68534985 GATTTGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGA-TTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTTA
*
68535049 GTAATAAATTTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
66 GTAATATA-TTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* * *
68535100 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTA--GTATTAGCGTATTAT-AATTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTTA
* *
68535162 ATAATATATTTTAAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
66 GTAATATA-TTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
*
68535213 GATTAGGTTATATAAATTATTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTTA
*
68535278 GTAATATATTTAAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
66 GTAATATATTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
68535328 GATTAGGTTATATATATTGTTAGTGTTTAGTGGTTTAGTGTGTATTAATGTATTGTGATTTTTTT
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTA--GTGTATTAGTGTATTGTGATTTTTTT
* *
68535393 TAGTAATGTATTT-AAAAAAATAATTTTATAGTTATTTT
64 TAGTAATATATTTAAAAAAAATAATTTTATAGCTATTTT
68535431 GTGTTAGTAT
Statistics
Matches: 307, Mismatches: 18, Indels: 11
0.91 0.05 0.03
Matches are distributed among these distances:
112 1 0.00
113 105 0.34
115 125 0.41
116 39 0.13
117 37 0.12
ACGTcount: A:0.33, C:0.01, G:0.15, T:0.51
Consensus pattern (115 bp):
GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGATTTTTTTTA
GTAATATATTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
Found at i:68535517 original size:15 final size:16
Alignment explanation
Indices: 68535488--68535519 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
68535478 TGTGATTTTT
68535488 TAATGTAATTTTTATA
1 TAATGTAATTTTTATA
68535504 TAATGTAA-TTTTATA
1 TAATGTAATTTTTATA
68535519 T
1 T
68535520 TATTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTAATTTTTATA
Found at i:68537679 original size:33 final size:33
Alignment explanation
Indices: 68537606--68537684 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
68537596 TCCACTTATG
* * *
68537606 TACTCAACTCCTCCAGAGCCGTATCCACCGCCG
1 TACTCTACTCCTCCAGAGCCATATCCACCGCCA
* * *
68537639 TACTCTACTCCTCCCGGGCCATATCCACCTCCA
1 TACTCTACTCCTCCAGAGCCATATCCACCGCCA
*
68537672 TATTCTACTCCTC
1 TACTCTACTCCTC
68537685 TCAGCTCAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.19, C:0.46, G:0.10, T:0.25
Consensus pattern (33 bp):
TACTCTACTCCTCCAGAGCCATATCCACCGCCA
Found at i:68539854 original size:26 final size:27
Alignment explanation
Indices: 68539825--68539885 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
68539815 AGGTATTTCG
* *
68539825 GTAATTTTGC-ACCTAGGGGTATAACA
1 GTAATTTTCCAACATAGGGGTATAACA
* *
68539851 GTAATTTTCCATACATAGGGGTATTATA
1 GTAATTTTCCA-ACATAGGGGTATAACA
68539879 GTAATTT
1 GTAATTT
68539886 AGCTACTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 9 0.31
28 20 0.69
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GTAATTTTCCAACATAGGGGTATAACA
Found at i:68541362 original size:26 final size:26
Alignment explanation
Indices: 68541331--68541438 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
68541321 TGAAATTCCC
*
68541331 ATCATGGAACATTTACTTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
68541357 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
68541383 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
68541409 ATCATGGAATATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
68541435 ATCA
1 ATCA
68541439 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 2 0.03
26 74 0.97
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.35
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:68541397 original size:52 final size:52
Alignment explanation
Indices: 68541331--68541438 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 52
68541321 TGAAATTCCC
*
68541331 ATCATGGAACATTTACTTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* * * *
68541383 ATCATGGAATATTTACCTAATCCATTATCATGGAATATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
68541435 ATCA
1 ATCA
68541439 ATTTGTATCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.35
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:68544406 original size:27 final size:27
Alignment explanation
Indices: 68544376--68544438 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
68544366 CCTACCAAGA
* *
68544376 AGGCACAACTAGTCGTGCCTGTTAGAT
1 AGGCACAACTAGTCGAGCCTGTCAGAT
* * *
68544403 AGGCTCAACTAGTTGAGCCTGTCAGGT
1 AGGCACAACTAGTCGAGCCTGTCAGAT
68544430 AGGCACAAC
1 AGGCACAAC
68544439 ATGTATGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (27 bp):
AGGCACAACTAGTCGAGCCTGTCAGAT
Found at i:68559058 original size:25 final size:24
Alignment explanation
Indices: 68559005--68559059 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
68558995 ATTAGATAAA
* *
68559005 AAATAATTTAACTTATATTATATTT
1 AAATAATTTAAC-TATATTATAATG
68559030 AAATAATTTAA-TATATTAATAGATG
1 AAATAATTTAACTATATT-ATA-ATG
68559055 AAATA
1 AAATA
68559060 TAGAATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 6 0.23
24 3 0.12
25 17 0.65
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (24 bp):
AAATAATTTAACTATATTATAATG
Found at i:68563739 original size:49 final size:49
Alignment explanation
Indices: 68563676--68563925 Score: 143
Period size: 50 Copynumber: 5.3 Consensus size: 49
68563666 TTGCATTTTT
68563676 AGGGAGATAAGATTTGATATTATAACTTTGATCTGATCCACTACAACTC
1 AGGGAGATAAGATTTGATATTATAACTTTGATCTGATCCACTACAACTC
* * * * *
68563725 AGGGATAT-AG----GAT-TTATAGC-TTCATCTTGCTCCACTACATCTCC
1 AGGGAGATAAGATTTGATATTATAACTTTGATC-TGATCCACTACAACT-C
* * * * *
68563769 AAGGAGAGAAAATTAGATATTATAACTTTGATC-GATCCACTGCAACTTC
1 AGGGAGATAAGATTTGATATTATAACTTTGATCTGATCCACTACAAC-TC
* * * * * * *
68563818 AGGGATAT-AG----GAT-TTATCAC-TTCATCTTGCTCTACTGCATCTTC
1 AGGGAGATAAGATTTGATATTATAACTTTGATC-TGATCCACTACAAC-TC
* * * *
68563862 AGGGAGATAAGATTTGATATTATAACTTTAATCTTATCCACTGCAATTTC
1 AGGGAGATAAGATTTGATATTATAACTTTGATCTGATCCACTACAA-CTC
*
68563912 AGGTAGATAAGATT
1 AGGGAGATAAGATT
68563926 CACCATTGTA
Statistics
Matches: 149, Mismatches: 32, Indels: 39
0.68 0.15 0.18
Matches are distributed among these distances:
42 10 0.07
43 25 0.17
44 32 0.21
45 3 0.02
48 3 0.02
49 29 0.19
50 37 0.25
51 10 0.07
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (49 bp):
AGGGAGATAAGATTTGATATTATAACTTTGATCTGATCCACTACAACTC
Found at i:68563753 original size:93 final size:94
Alignment explanation
Indices: 68563525--68563914 Score: 387
Period size: 93 Copynumber: 4.2 Consensus size: 94
68563515 TCTTTCCAAC
* * ** * * * *
68563525 CCACTACAACTTTA-GGAGTATAGGATTTGTAATTTCATCTTACTCCACTACAACTTTAGGGAGA
1 CCACTACAACTTCAGGGA-TATAGGATTTATAGCTTCATCTTGCTCCACTGCATCTTCAGGGAGA
* * ** * ** *
68563589 TAAGATTCGTTATGGTAGCTTCAATCCGA-
65 TAAGATTTGATATTATAACTTTGATCTGAT
** * * * * *
68563618 CTCACTGTAACTTAAAGGG-TATAGGATTTATAGCTTCATCTTGTTCCATTGCATTTTTAGGGAG
1 C-CACTACAACTT-CAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCATCTTCAGGGAG
68563682 ATAAGATTTGATATTATAACTTTGATCTGAT
64 ATAAGATTTGATATTATAACTTTGATCTGAT
* * * *
68563713 CCACTACAAC-TCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTACATCTCCAAGGAGAG
1 CCACTACAACTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCATCTTCAGGGAGAT
* *
68563777 AAAATTAGATATTATAACTTTGATC-GAT
66 AAGATTTGATATTATAACTTTGATCTGAT
* *
68563805 CCACTGCAACTTCAGGGATATAGGATTTATCA-CTTCATCTTGCTCTACTGCATCTTCAGGGAGA
1 CCACTACAACTTCAGGGATATAGGATTTAT-AGCTTCATCTTGCTCCACTGCATCTTCAGGGAGA
* *
68563869 TAAGATTTGATATTATAACTTTAATCTTAT
65 TAAGATTTGATATTATAACTTTGATCTGAT
* *
68563899 CCACTGCAATTTCAGG
1 CCACTACAACTTCAGG
68563915 TAGATAAGAT
Statistics
Matches: 245, Mismatches: 44, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
92 16 0.07
93 133 0.54
94 92 0.38
95 2 0.01
96 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.35
Consensus pattern (94 bp):
CCACTACAACTTCAGGGATATAGGATTTATAGCTTCATCTTGCTCCACTGCATCTTCAGGGAGAT
AAGATTTGATATTATAACTTTGATCTGAT
Found at i:68564078 original size:94 final size:93
Alignment explanation
Indices: 68563916--68564288 Score: 347
Period size: 94 Copynumber: 4.0 Consensus size: 93
68563906 AATTTCAGGT
* * * * * * *
68563916 AGATAAGATTCACCATTGTAGTTCCATTCCGACCCACTGCAACTTTAGAGGTATAGGACTTGTAG
1 AGATAAGATTCACCACTGTAGTTTCAATCTGACCCACTACAACTTCAG-GGTATAGGATTTGTAG
* * *
68563981 CTTCATCTTGCTCTATTAAAACTTTAGAG
65 CTTCATCTTGCTCCACTATAACTTTAGAG
** * * * *
68564010 AGATAAGATTCGTCATTGTAGTTTTAATCTGACCCACTACAACTTCACGGGTATAGAATTTGTTG
1 AGATAAGATTCACCACTGTAGTTTCAATCTGACCCACTACAACTTCA-GGGTATAGGATTTGTAG
* *
68564075 CTTCATCTTACTCCACTATAACTTCAGAG
65 CTTCATCTTGCTCCACTATAACTTTAGAG
* * ** *
68564104 AGATAAGATTCACCACTGTAGATTCAATTTGACCCACTGTAACTTTAGGGGTATAGGATTTGTAG
1 AGATAAGATTCACCACTGTAGTTTCAATCTGACCCACTACAACTTCA-GGGTATAGGATTTGTAG
* * *
68564169 TTTCAAT-TTGGTCCACTGTAACTTTAGAG
65 CTTC-ATCTTGCTCCACTATAACTTTAGAG
* * * * * *
68564198 AGATAAGATTCACTACGGTAACTTT-AATCTGACCCAATATAACTTCAAGGGTATAGGATTTGAA
1 AGATAAGATTCACCACTGT-AGTTTCAATCTGACCCACTACAACTTC-AGGGTATAGGATTTGTA
* * *
68564262 ACTTCAATC-TACTCCACTGTAACTTTA
64 GCTTC-ATCTTGCTCCACTATAACTTTA
68564289 AGGCTATAGG
Statistics
Matches: 228, Mismatches: 46, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
94 221 0.97
95 7 0.03
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (93 bp):
AGATAAGATTCACCACTGTAGTTTCAATCTGACCCACTACAACTTCAGGGTATAGGATTTGTAGC
TTCATCTTGCTCCACTATAACTTTAGAG
Found at i:68564233 original size:188 final size:188
Alignment explanation
Indices: 68563916--68564286 Score: 453
Period size: 188 Copynumber: 2.0 Consensus size: 188
68563906 AATTTCAGGT
* *
68563916 AGATAAGATTCACCATTGTAGTTCCATTCCGACCCACTGCAACTTTAGAGGTATAGGACTTGTAG
1 AGATAAGATTCACCACTGTAGTTCAATTCCGACCCACTGCAACTTTAGAGGTATAGGACTTGTAG
* * * ** **
68563981 CTTCATCTTGCTCTATTAAAACTTTAGAGAGATAAGATTCGTCATTGTAGTTTTAATCTGACCCA
66 CTTCATCTTGCTCCACTAAAACTTTAGAGAGATAAGATTCCTCACGGTAACTTTAATCTGACCCA
* * ***
68564046 CTACAACTTCACGGGTATAGAATTTGTTGCTTC-ATCTTACTCCACTATAACTTCAGAG
131 ATACAACTTCAAGGGTATAGAATTTGAAACTTCAATC-TACTCCACTATAACTTCAGAG
* * * *
68564104 AGATAAGATTCACCACTGTAGATTCAATT-TGACCCACTGTAACTTTAGGGGTATAGGATTTGTA
1 AGATAAGATTCACCACTGTAG-TTCAATTCCGACCCACTGCAACTTTAGAGGTATAGGACTTGTA
* * **
68564168 GTTTCAAT-TTGGTCCACTGTAACTTTAGAGAGATAAGATTCACT-ACGGTAACTTTAATCTGAC
65 GCTTC-ATCTTGCTCCACTAAAACTTTAGAGAGATAAGATTC-CTCACGGTAACTTTAATCTGAC
* * *
68564231 CCAATATAACTTCAAGGGTATAGGATTTGAAACTTCAATCTACTCCACTGTAACTT
128 CCAATACAACTTCAAGGGTATAGAATTTGAAACTTCAATCTACTCCACTATAACTT
68564287 TAAGGCTATA
Statistics
Matches: 154, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
188 142 0.92
189 12 0.08
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (188 bp):
AGATAAGATTCACCACTGTAGTTCAATTCCGACCCACTGCAACTTTAGAGGTATAGGACTTGTAG
CTTCATCTTGCTCCACTAAAACTTTAGAGAGATAAGATTCCTCACGGTAACTTTAATCTGACCCA
ATACAACTTCAAGGGTATAGAATTTGAAACTTCAATCTACTCCACTATAACTTCAGAG
Found at i:68564285 original size:44 final size:44
Alignment explanation
Indices: 68564237--68564324 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
68564227 TGACCCAATA
*
68564237 TAACTTCAAGGGTATAGGATTTGAAACTTCAATCTACTCCACTG
1 TAACTTCAAGGCTATAGGATTTGAAACTTCAATCTACTCCACTG
* * *
68564281 TAACTTTAAGGCTATAGGATTTGTAGCTTCAATCTACTCCACTG
1 TAACTTCAAGGCTATAGGATTTGAAACTTCAATCTACTCCACTG
68564325 CAATTTCAGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (44 bp):
TAACTTCAAGGCTATAGGATTTGAAACTTCAATCTACTCCACTG
Found at i:68564301 original size:138 final size:138
Alignment explanation
Indices: 68564137--68564429 Score: 347
Period size: 138 Copynumber: 2.1 Consensus size: 138
68564127 TCAATTTGAC
* * * * ** *
68564137 CCACTGTAACTTTAGGGGTATAGGATTTGTAGTTTCAATTTGGTCCACTGTAACTTT-AGAGAGA
1 CCACTGTAACTTTAAGGCTATAGGATTTGTAGCTTCAATCTACTCCACTGCAA-TTTCAGAGAGA
* * * * *
68564201 TAAGATTCACTACGGTA-ACTTTAATCTGACCCAATATAACTTCAAGGGTATAGGATTTGAAACT
65 TAAGATTAACTACGGTAGA-TTCAATCGGACCCAATACAACTTCAAGGGTATAGGAGTTGAAACT
68564265 TCAATCTACT
129 TCAATCTACT
*
68564275 CCACTGTAACTTTAAGGCTATAGGATTTGTAGCTTCAATCTACTCCACTGCAATTTCAGGGAGAT
1 CCACTGTAACTTTAAGGCTATAGGATTTGTAGCTTCAATCTACTCCACTGCAATTTCAGAGAGAT
* * * *** *
68564340 AAGATTAACTATGGTAGATTCAATCGGACCCATTACAACTTCAGGGGTATAGGAGTTGTGGCTTT
66 AAGATTAACTACGGTAGATTCAATCGGACCCAATACAACTTCAAGGGTATAGGAGTTGAAACTTC
*
68564405 AATCTGCT
131 AATCTACT
* *
68564413 CCACTGCAACTTCAAGG
1 CCACTGTAACTTTAAGG
68564430 AGATAAGATT
Statistics
Matches: 130, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
137 3 0.02
138 126 0.97
139 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (138 bp):
CCACTGTAACTTTAAGGCTATAGGATTTGTAGCTTCAATCTACTCCACTGCAATTTCAGAGAGAT
AAGATTAACTACGGTAGATTCAATCGGACCCAATACAACTTCAAGGGTATAGGAGTTGAAACTTC
AATCTACT
Found at i:68564432 original size:94 final size:94
Alignment explanation
Indices: 68564264--68565056 Score: 950
Period size: 94 Copynumber: 8.4 Consensus size: 94
68564254 GATTTGAAAC
* * * * *
68564264 TTCAATCT-ACTCCACTGTAACTTTAAGGCTATAGGATTTGTAGCTTCAATCTACTCCACTGCAA
1 TTCAATCTGAC-CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAA
* * **
68564328 TTTCAGGGAGATAAGATTAACTATGGTAGA
65 CTTCAAGGAGATAAGATTCGCTATGGTAGA
* * * * * *
68564358 TTCAATCGGACCCATTACAACTTCAGGGGTATAGGAGTTGTGGCTTTAATCTGCTCCACTGCAAC
1 TTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAAC
*
68564423 TTCAAGGAGATAAGATTTGCTATGGTAGA
66 TTCAAGGAGATAAGATTCGCTATGGTAGA
* * * *
68564452 TTCAGTCTGACCCACTGCAACTTCAGGGGTATAAGATTTGTAGCTTCAATCCTACTCCACTGAAA
1 TTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAAT-CTGCTCCACTGCAA
*
68564517 CTTC-AGGAAGATAAGATTTGCTATGGTAGA
65 CTTCAAGG-AGATAAGATTCGCTATGGTAGA
* * * * * * *
68564547 TTCATTCTGACCCACTGTAACTTTAGCGGTATAGGATTTGTAGCTTCAATATGCTCTATTGCAAC
1 TTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAAC
* *
68564612 TTCAGGGAGATAAGATTCGCTATGGAAGA
66 TTCAAGGAGATAAGATTCGCTATGGTAGA
* *
68564641 TTCAAT-TCGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAACCTACTCCACTGCAA
1 TTCAATCT-GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAA
* *
68564705 CTTCAGGGAGATAAGATTCGCTATAGTAGA
65 CTTCAAGGAGATAAGATTCGCTATGGTAGA
* * * * * *
68564735 TTCAAT-TCGACCCATTGAAACTTCAAGGGTATATGATTTGTAGCTTCAATTTGCTCCACTACAA
1 TTCAATCT-GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAA
** *
68564799 -TTTTAGAGAGATAATATTCGCTATGGTAGA
65 CTTCAAG-GAGATAAGATTCGCTATGGTAGA
* * **
68564829 TTCAATCTGACCTACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCTACTAAAAC
1 TTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAAC
*
68564894 TTGAAGGAGATAAGATTCGCTATGGTAGA
66 TTCAAGGAGATAAGATTCGCTATGGTAGA
* * * *
68564923 TTTAATTTGACCCACTGCAACTTCA-GGGTATAGGATTTGTAGCTTAAATATGCTCCACTGCAAC
1 TTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAAC
* ** *
68564987 TTCAAGGAGATAAGATCCATTATGGTAAA
66 TTCAAGGAGATAAGATTCGCTATGGTAGA
* * * *
68565016 TTCAATCGGACCCACTACAACTTTAGGGGTATAAGATTTGT
1 TTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGT
68565057 GTTTCACTAA
Statistics
Matches: 598, Mismatches: 92, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
93 82 0.14
94 424 0.71
95 92 0.15
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (94 bp):
TTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCCACTGCAAC
TTCAAGGAGATAAGATTCGCTATGGTAGA
Found at i:68564501 original size:232 final size:233
Alignment explanation
Indices: 68564061--68564519 Score: 534
Period size: 232 Copynumber: 2.0 Consensus size: 233
68564051 ACTTCACGGG
* * *
68564061 TATAGAATTTGTTGCTTCATCTTACTCCACTATAACTTCAGAGAGATAAGATTCACCACTGTAGA
1 TATAGAATTTGTAGCTTCATCTTACTCCACTACAACTTCAGAGAGATAAGATTAACCACTGTAGA
** ** * * * * *
68564126 TTCAATTTGACCCACTGTAACTTTAGGGGTATAGGATTTGTAGTTTCAATTTGGTCCACTGTAAC
66 TTCAATCGGACCCACTACAACTTCAGGGGTATAGGAGTTGTAGTTTCAATCTGCTCCACTGCAAC
* * * *
68564191 TTTAGAGAGATAAGATTCACTACGGTAACTTTAATCTGACCCAATATAACTTCAAGGGTATAGGA
131 TTAAGAGAGATAAGATTCACTACGGTAACTTCAATCTGACCCAATACAACTTCAAGGGTATAAGA
*
68564256 TTTGAAACTTCAAT-CTACTCCACTGTAACTTTAAGGC
196 TTTGAAACTTCAATCCTACTCCACTGAAACTTTAAGGC
* * * * *
68564293 TATAGGATTTGTAGCTTCAATC-TACTCCACTGCAATTTCAGGGAGATAAGATTAACTA-TGGTA
1 TATAGAATTTGTAGCTTC-ATCTTACTCCACTACAACTTCAGAGAGATAAGATTAACCACT-GTA
* *
68564356 GATTCAATCGGACCCATTACAACTTCAGGGGTATAGGAGTTGTGGCTTT-AATCTGCTCCACTGC
64 GATTCAATCGGACCCACTACAACTTCAGGGGTATAGGAGTTGTAG-TTTCAATCTGCTCCACTGC
** * * * * *
68564420 AACTTCAAG-GAGATAAGATTTGCTATGGTAGA-TTCAGTCTGACCCACTGCAACTTCAGGGGTA
128 AACTT-AAGAGAGATAAGATTCACTACGGTA-ACTTCAATCTGACCCAATACAACTTCAAGGGTA
* *
68564483 TAAGATTTGTAGCTTCAATCCTACTCCACTGAAACTT
191 TAAGATTTGAAACTTCAATCCTACTCCACTGAAACTT
68564520 CAGGAAGATA
Statistics
Matches: 188, Mismatches: 33, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
231 1 0.01
232 162 0.86
233 25 0.13
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32
Consensus pattern (233 bp):
TATAGAATTTGTAGCTTCATCTTACTCCACTACAACTTCAGAGAGATAAGATTAACCACTGTAGA
TTCAATCGGACCCACTACAACTTCAGGGGTATAGGAGTTGTAGTTTCAATCTGCTCCACTGCAAC
TTAAGAGAGATAAGATTCACTACGGTAACTTCAATCTGACCCAATACAACTTCAAGGGTATAAGA
TTTGAAACTTCAATCCTACTCCACTGAAACTTTAAGGC
Found at i:68564875 original size:377 final size:375
Alignment explanation
Indices: 68564275--68565056 Score: 1074
Period size: 377 Copynumber: 2.1 Consensus size: 375
68564265 TCAATCTACT
* * * * *
68564275 CCACTGTAACTTTAAGGCTATAGGATTTGTAGCTTCAATCTACTCCACTGCAATTTCAGGGAGAT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGAGAT
* * * *
68564340 AAGATTAACTATGGTAGATTCAATCGGACCCATTACAACTTCAGGGGTATAGGAGTTGTGGCTTT
66 AAGATTAACTATAGTAGATTCAATCGGACCCATTACAACTTCAAGGGTATAGGAGTTGTAGCTTC
* * *
68564405 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCTATGGTAGATTCAGTCTGACCCACTGC
131 AATCTGCTCCACTACAACTTCAAGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTGC
* *
68564470 AACTTCAGGGGTATAAGATTTGTAGCTTCAATCCTACTCCACTGAAACTT-CAGGAAGATAAGAT
196 AACTTCAGGGGTATAAGATTTGTAGCTTCAAT-CTACTCCACTAAAACTTGAAGG-AGATAAGAT
* * * * *
68564534 TTGCTATGGTAGA-TTCATTCTGACCCACTGTAACTTTAGCGGTATAGGATTTGTAGCTTCAATA
259 TCGCTATGGTAGATTTAATT-TGACCCACTGCAACTTCAG-GGTATAGGATTTGTAGCTTAAATA
* * * * *
68564598 TGCTCTATTGCAACTTCAGGGAGATAAGATTCGCTATGG-AAGATTCAATTC-GAC
322 TGCTCCACTGCAACTTCAAGGAGATAAGATCCACTATGGTAA-ATTCAA-TCGGAC
*
68564652 CCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGAGAT
** * *
68564717 AAGATTCGCTATAGTAGATTCAATTC-GACCCATTGA-AACTTCAAGGGTATATGATTTGTAGCT
66 AAGATTAACTATAGTAGATTCAA-TCGGACCCATT-ACAACTTCAAGGGTATAGGAGTTGTAGCT
* ** * *
68564780 TCAATTTGCTCCACTACAA-TTTTAGAGAGATAATATTCGCTATGGTAGATTCAATCTGACCTAC
129 TCAATCTGCTCCACTACAACTTCAAG-GAGATAAGATTCGCTATGGTAGATTCAATCTGACCCAC
* * *
68564844 TGCAACTTCAGGGGTATAGGATTTGTAGCTTCAATCTGCTCTACTAAAACTTGAAGGAGATAAGA
193 TGCAACTTCAGGGGTATAAGATTTGTAGCTTCAATCTACTCCACTAAAACTTGAAGGAGATAAGA
68564909 TTCGCTATGGTAGATTTAATTTGACCCACTGCAACTTCAGGGTATAGGATTTGTAGCTTAAATAT
258 TTCGCTATGGTAGATTTAATTTGACCCACTGCAACTTCAGGGTATAGGATTTGTAGCTTAAATAT
*
68564974 GCTCCACTGCAACTTCAAGGAGATAAGATCCATTATGGTAAATTCAATCGGAC
323 GCTCCACTGCAACTTCAAGGAGATAAGATCCACTATGGTAAATTCAATCGGAC
* *
68565027 CCACTACAACTTTAGGGGTATAAGATTTGT
1 CCACTGCAACTTTAGGGGTATAGGATTTGT
68565057 GTTTCACTAA
Statistics
Matches: 357, Mismatches: 41, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
374 2 0.01
375 92 0.26
376 58 0.16
377 202 0.57
378 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (375 bp):
CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGAGAT
AAGATTAACTATAGTAGATTCAATCGGACCCATTACAACTTCAAGGGTATAGGAGTTGTAGCTTC
AATCTGCTCCACTACAACTTCAAGGAGATAAGATTCGCTATGGTAGATTCAATCTGACCCACTGC
AACTTCAGGGGTATAAGATTTGTAGCTTCAATCTACTCCACTAAAACTTGAAGGAGATAAGATTC
GCTATGGTAGATTTAATTTGACCCACTGCAACTTCAGGGTATAGGATTTGTAGCTTAAATATGCT
CCACTGCAACTTCAAGGAGATAAGATCCACTATGGTAAATTCAATCGGAC
Found at i:68568305 original size:23 final size:23
Alignment explanation
Indices: 68568279--68568323 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
68568269 TTCCTGTATC
68568279 GCCATTCTTCCATTCAAATGCGA
1 GCCATTCTTCCATTCAAATGCGA
68568302 GCCATTCTTCCATTCAAATGCG
1 GCCATTCTTCCATTCAAATGCG
68568324 GTCGAATCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.31, G:0.13, T:0.31
Consensus pattern (23 bp):
GCCATTCTTCCATTCAAATGCGA
Found at i:68568723 original size:485 final size:485
Alignment explanation
Indices: 68567814--68569251 Score: 2831
Period size: 485 Copynumber: 3.0 Consensus size: 485
68567804 GATCAGTTAT
*
68567814 CGAGCCATTCTTCCATTAAAATGCGGTCGAATCCATCATGAACTTTAGAGGGTTCATTTTCAAAA
1 CGAGCCATTCTTCCATTCAAATGCGGTCGAATCCATCATGAACTTTAGAGGGTTCATTTTCAAAA
68567879 TAATCGAAGGCGCAACACAACTTCTCGATTGGTGAATATCTTGTCTCGCATTCGGTGGACTTCTT
66 TAATCGAAGGCGCAACACAACTTCTCGATTGGTGAATATCTTGTCTCGCATTCGGTGGACTTCTT
68567944 GCTGAGGTAATAGATTGCTCTTTCTTTCCTCCCTGACTCATCATATTGGCCAAGTATGAATCCCA
131 GCTGAGGTAATAGATTGCTCTTTCTTTCCTCCCTGACTCATCATATTGGCCAAGTATGAATCCCA
*
68568009 TAACATTTCCAAATACTTCCAAGTACAGTATCAATTATTTATCTTGGCTAGGTGTCAACAACACT
196 TAACATTTCCAAATACTTCCAAGTACAGTATCAATTATTTATCTTGGCTAGGTGGCAACAACACT
68568074 GGGGCATTATACAAATGGAGTTTAGCCTTGTCGAAGGTCTTCTGGCATTCCTCATCCCATACACA
261 GGGGCATTATACAAATGGAGTTTAGCCTTGTCGAAGGTCTTCTGGCATTCCTCATCCCATACACA
68568139 TAGATCATGTTTCTTAAGGAGACGGAATTTGGGTTCATATTTCTCGGTCAGTTGTGAAATAAATC
326 TAGATCATGTTTCTTAAGGAGACGGAATTTGGGTTCATATTTCTCGGTCAGTTGTGAAATAAATC
68568204 GAGTATTATAATTTAATCTTTCTAAGAAACCTTGAAATTCCTTTTTTGGTTCGCGGCGATGGTAA
391 GAGTATTATAATTTAATCTTTCTAAGAAACCTTGAAATTCCTTTTTTGGTTCGCGGCGATGGTAA
68568269 TTCCTGTATCGCCATTCTTCCATTCAAATG
456 TTCCTGTATCGCCATTCTTCCATTCAAATG
68568299 CGAGCCATTCTTCCATTCAAATGCGGTCGAATCCATCATGAACTTTAGAGGGTTCATTTTCAAAA
1 CGAGCCATTCTTCCATTCAAATGCGGTCGAATCCATCATGAACTTTAGAGGGTTCATTTTCAAAA
68568364 TAATCGAAGGCGCAACACAACTTCTCGATTGGTGAATATCTTGTCTCGCATTCGGTGGACTTCTT
66 TAATCGAAGGCGCAACACAACTTCTCGATTGGTGAATATCTTGTCTCGCATTCGGTGGACTTCTT
*
68568429 GCTGAAGTAATAGATTGCTCTTTCTTTCCTCCCTGACTCATCATATTGGCCAAGTATGAATCCCA
131 GCTGAGGTAATAGATTGCTCTTTCTTTCCTCCCTGACTCATCATATTGGCCAAGTATGAATCCCA
68568494 TAACATTTCCAAATACTTCCAAGTACAGTATCAATTATTTATCTTGGCTAGGTGGCAACAACACT
196 TAACATTTCCAAATACTTCCAAGTACAGTATCAATTATTTATCTTGGCTAGGTGGCAACAACACT
68568559 GGGGCATTATACAAATGGAGTTTAGCCTTGTCGAAGGTCTTCTGGCATTCCTCATCCCATACACA
261 GGGGCATTATACAAATGGAGTTTAGCCTTGTCGAAGGTCTTCTGGCATTCCTCATCCCATACACA
68568624 TAGATCATGTTTCTTAAGGAGACGGAATTTGGGTTCATATTTCTCGGTCAGTTGTGAAATAAATC
326 TAGATCATGTTTCTTAAGGAGACGGAATTTGGGTTCATATTTCTCGGTCAGTTGTGAAATAAATC
68568689 GAGTATTATAATTTAATCTTTCTAAGAAACCTTGAAATTCCTTTTTTGGTTCGCGGCGATGGTAA
391 GAGTATTATAATTTAATCTTTCTAAGAAACCTTGAAATTCCTTTTTTGGTTCGCGGCGATGGTAA
68568754 TTCCTGTATCGCCATTCTTCCATTCAAATG
456 TTCCTGTATCGCCATTCTTCCATTCAAATG
*
68568784 CGAGCCATTCTTCCATTCAAATACGGTCGAATCCATCATGAACTTTAGAGGGTTCATTTTCAAAA
1 CGAGCCATTCTTCCATTCAAATGCGGTCGAATCCATCATGAACTTTAGAGGGTTCATTTTCAAAA
68568849 TAATCGAAGGCGCAACACAACTTCTCGATTGGTGAATATCTTGTCTCGCATTCGGTGGACTTCTT
66 TAATCGAAGGCGCAACACAACTTCTCGATTGGTGAATATCTTGTCTCGCATTCGGTGGACTTCTT
68568914 GCTGAGGTAATAGATTGCTCTTTCTTTCCTCCCTGACTCATCATATTGGCCAAGTATGAATCCCA
131 GCTGAGGTAATAGATTGCTCTTTCTTTCCTCCCTGACTCATCATATTGGCCAAGTATGAATCCCA
68568979 TAACATTTCCAAATACTTCCAAGTACAGTATCAATTATTTATCTTGGCTAGGTGGCAACAACACT
196 TAACATTTCCAAATACTTCCAAGTACAGTATCAATTATTTATCTTGGCTAGGTGGCAACAACACT
68569044 GGGGCATTATACAAATGGAGTTTAGCCTTGTCGAAGGTCTTCTGGCATTCCTCATCCCATACACA
261 GGGGCATTATACAAATGGAGTTTAGCCTTGTCGAAGGTCTTCTGGCATTCCTCATCCCATACACA
*
68569109 TAGATCATGTTTCTTAAGGAAACGGAATTTGGGTTCATATTTCTCGGTCAGTTGTGAAATAAATC
326 TAGATCATGTTTCTTAAGGAGACGGAATTTGGGTTCATATTTCTCGGTCAGTTGTGAAATAAATC
68569174 GAGTATTATAATTTAATCTTTCTAAGAAACCTTGAAATTCCTTTTTTGGTTCGCGGCGATGGTAA
391 GAGTATTATAATTTAATCTTTCTAAGAAACCTTGAAATTCCTTTTTTGGTTCGCGGCGATGGTAA
68569239 TTCCTGTATCGCC
456 TTCCTGTATCGCC
68569252 TTGACTTTAT
Statistics
Matches: 947, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
485 947 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (485 bp):
CGAGCCATTCTTCCATTCAAATGCGGTCGAATCCATCATGAACTTTAGAGGGTTCATTTTCAAAA
TAATCGAAGGCGCAACACAACTTCTCGATTGGTGAATATCTTGTCTCGCATTCGGTGGACTTCTT
GCTGAGGTAATAGATTGCTCTTTCTTTCCTCCCTGACTCATCATATTGGCCAAGTATGAATCCCA
TAACATTTCCAAATACTTCCAAGTACAGTATCAATTATTTATCTTGGCTAGGTGGCAACAACACT
GGGGCATTATACAAATGGAGTTTAGCCTTGTCGAAGGTCTTCTGGCATTCCTCATCCCATACACA
TAGATCATGTTTCTTAAGGAGACGGAATTTGGGTTCATATTTCTCGGTCAGTTGTGAAATAAATC
GAGTATTATAATTTAATCTTTCTAAGAAACCTTGAAATTCCTTTTTTGGTTCGCGGCGATGGTAA
TTCCTGTATCGCCATTCTTCCATTCAAATG
Found at i:68577872 original size:29 final size:29
Alignment explanation
Indices: 68577830--68577888 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
68577820 AGCCGAGGGG
68577830 ATGACTTCCTCCTTCAATCGAACCCTCTT
1 ATGACTTCCTCCTTCAATCGAACCCTCTT
68577859 ATGACTTCCTCCTTCAATCGAACCCTCTT
1 ATGACTTCCTCCTTCAATCGAACCCTCTT
68577888 A
1 A
68577889 CTCTTGCCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.22, C:0.37, G:0.07, T:0.34
Consensus pattern (29 bp):
ATGACTTCCTCCTTCAATCGAACCCTCTT
Found at i:68580474 original size:25 final size:25
Alignment explanation
Indices: 68580396--68580497 Score: 79
Period size: 25 Copynumber: 4.2 Consensus size: 25
68580386 GTTTTTTGTC
* *
68580396 AGCTTCTTGATTAATGGCTCTTCAG
1 AGCTTCCTGATTAATGGCTATTCAG
* * *
68580421 AGCTACCCGA-T-ATGGCTCACTTTA-
1 AGCTTCCTGATTAATGGCT-A-TTCAG
*
68580445 A-CTTCCTGA-TATATGGCTATTCAT
1 AGCTTCCTGATTA-ATGGCTATTCAG
*
68580469 AGCTTCCTGATTAATGGCTCTTCAG
1 AGCTTCCTGATTAATGGCTATTCAG
68580494 AGCT
1 AGCT
68580498 GGCTCGCATG
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
23 16 0.27
24 4 0.07
25 38 0.63
26 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.36
Consensus pattern (25 bp):
AGCTTCCTGATTAATGGCTATTCAG
Found at i:68581962 original size:21 final size:21
Alignment explanation
Indices: 68581936--68581978 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
68581926 TGGGCCTCGA
68581936 GGGCTCATATAAGGGACTTAT
1 GGGCTCATATAAGGGACTTAT
68581957 GGGCTCATATAAGGGACTTAT
1 GGGCTCATATAAGGGACTTAT
68581978 G
1 G
68581979 AATAATATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (21 bp):
GGGCTCATATAAGGGACTTAT
Found at i:68593778 original size:26 final size:25
Alignment explanation
Indices: 68593755--68593826 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 25
68593745 GTCTCGATAT
68593755 ATGGCTCTTTGCGAGCTTCCCGATTA
1 ATGGCTCTTTG-GAGCTTCCCGATTA
* * *
68593781 AAGGCTTTTTGTGAGCTTCCTGATTA
1 ATGGCTCTTTG-GAGCTTCCCGATTA
**
68593807 ATGGCTCTCCGGAGCTTCCC
1 ATGGCTCTTTGGAGCTTCCC
68593827 AATATGGCTC
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
25 8 0.22
26 29 0.78
ACGTcount: A:0.15, C:0.26, G:0.24, T:0.35
Consensus pattern (25 bp):
ATGGCTCTTTGGAGCTTCCCGATTA
Found at i:68593920 original size:25 final size:25
Alignment explanation
Indices: 68593855--68593914 Score: 111
Period size: 25 Copynumber: 2.4 Consensus size: 25
68593845 TTCCCAATAT
*
68593855 ATGGCTATCCGAAGCTTTCTGATTA
1 ATGGCTATTCGAAGCTTTCTGATTA
68593880 ATGGCTATTCGAAGCTTTCTGATTA
1 ATGGCTATTCGAAGCTTTCTGATTA
68593905 ATGGCTATTC
1 ATGGCTATTC
68593915 AGAGCTACCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.38
Consensus pattern (25 bp):
ATGGCTATTCGAAGCTTTCTGATTA
Found at i:68597391 original size:20 final size:19
Alignment explanation
Indices: 68597345--68597391 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
68597335 AGTCCTTTTT
*
68597345 CCTAATTTCTCCTAATTAAG
1 CCTAA-TTCACCTAATTAAG
68597365 -CTAAATTCACCTAATTAAAG
1 CCT-AATTCACCTAATT-AAG
68597385 CCTAATT
1 CCTAATT
68597392 AAACACACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 12 0.52
20 9 0.39
21 2 0.09
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.36
Consensus pattern (19 bp):
CCTAATTCACCTAATTAAG
Found at i:68600167 original size:6 final size:6
Alignment explanation
Indices: 68600141--68600228 Score: 51
Period size: 6 Copynumber: 14.8 Consensus size: 6
68600131 TTTTGAATTT
* *
68600141 TTTTTC -TTTT- TTTTCC TTTTTC TTTTTC ATGTTCTTC TTTTTC -ATTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -T-TT-TTC TTTTTC TTTTTC
* * * *
68600189 CTTTTG TTTTGC TTTTTC TTTCTT- TTTTTG TTTTT- TTTTT
1 TTTTTC TTTTTC TTTTTC TTT-TTC TTTTTC TTTTTC TTTTT
68600229 GAAAATGGTG
Statistics
Matches: 65, Mismatches: 9, Indels: 17
0.71 0.10 0.19
Matches are distributed among these distances:
5 18 0.28
6 36 0.55
7 5 0.08
8 3 0.05
9 3 0.05
ACGTcount: A:0.02, C:0.15, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTC
Found at i:68604829 original size:21 final size:21
Alignment explanation
Indices: 68604800--68604840 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68604790 ATAGGATATG
*
68604800 TGATGTGGCCTGTTAACTAGT
1 TGATATGGCCTGTTAACTAGT
*
68604821 TGATATGGCTTGTTAACTAG
1 TGATATGGCCTGTTAACTAG
68604841 CCATATTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.12, G:0.27, T:0.39
Consensus pattern (21 bp):
TGATATGGCCTGTTAACTAGT
Found at i:68618509 original size:3 final size:3
Alignment explanation
Indices: 68618501--68618527 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
68618491 AGCCATCCTT
68618501 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
68618528 ATGTAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:68628956 original size:9 final size:9
Alignment explanation
Indices: 68628942--68628978 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
68628932 TTTAAAATAT
68628942 TATGATAAA
1 TATGATAAA
68628951 TATGATAAA
1 TATGATAAA
68628960 TAT-A-AAA
1 TATGATAAA
*
68628967 TATTATAAA
1 TATGATAAA
68628976 TAT
1 TAT
68628979 TTTAGAGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 6 0.23
8 2 0.08
9 18 0.69
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (9 bp):
TATGATAAA
Found at i:68628969 original size:16 final size:16
Alignment explanation
Indices: 68628948--68628978 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68628938 ATATTATGAT
68628948 AAATATGATAAATATA
1 AAATATGATAAATATA
*
68628964 AAATATTATAAATAT
1 AAATATGATAAATAT
68628979 TTTAGAGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
AAATATGATAAATATA
Found at i:68632546 original size:17 final size:19
Alignment explanation
Indices: 68632524--68632567 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
68632514 ACTGTTGGAG
68632524 TAGG-AATAT-CGATACCT
1 TAGGAAATATACGATACCT
68632541 TAGGAAATATAACGATACCT
1 TAGGAAATAT-ACGATACCT
*
68632561 TAAGAAA
1 TAGGAAA
68632568 AGTATCGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
20 14 0.61
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (19 bp):
TAGGAAATATACGATACCT
Found at i:68632576 original size:20 final size:20
Alignment explanation
Indices: 68632529--68632578 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
68632519 TGGAGTAGGA
*
68632529 ATATCGATACCTTAGGAAAT
1 ATATCGATACCTTAAGAAAT
*
68632549 ATAACGATACCTTAAGAAA-
1 ATATCGATACCTTAAGAAAT
68632568 AGTATCGATAC
1 A-TATCGATAC
68632579 TAGATCGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 1 0.04
20 25 0.96
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.26
Consensus pattern (20 bp):
ATATCGATACCTTAAGAAAT
Found at i:68632956 original size:33 final size:33
Alignment explanation
Indices: 68632919--68632985 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
68632909 TGAATAGATT
*
68632919 GCTCCCTCTTA-ATAAAAGTCATTTTCAATTTAA
1 GCTCCCT-TTATATAAAAATCATTTTCAATTTAA
*
68632952 GCTCCCTTTATATAAAAATCATTTTTAATTTAA
1 GCTCCCTTTATATAAAAATCATTTTCAATTTAA
68632985 G
1 G
68632986 GCATAAAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 3 0.10
33 28 0.90
ACGTcount: A:0.34, C:0.18, G:0.06, T:0.42
Consensus pattern (33 bp):
GCTCCCTTTATATAAAAATCATTTTCAATTTAA
Found at i:68640598 original size:51 final size:51
Alignment explanation
Indices: 68640531--68640634 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
68640521 ATTTATTGGG
68640531 TAAACTATCAAAATAGTCACTTTTGTTTGCCTTAGATATCATTTTATCACT
1 TAAACTATCAAAATAGTCACTTTTGTTTGCCTTAGATATCATTTTATCACT
*
68640582 TAAACTATCTAAATAGTCACTTTTGTTTGCCTTAGATATCATTTTATCACT
1 TAAACTATCAAAATAGTCACTTTTGTTTGCCTTAGATATCATTTTATCACT
68640633 TA
1 TA
68640635 TGTTTGAAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (51 bp):
TAAACTATCAAAATAGTCACTTTTGTTTGCCTTAGATATCATTTTATCACT
Found at i:68643554 original size:32 final size:32
Alignment explanation
Indices: 68643476--68643569 Score: 97
Period size: 32 Copynumber: 3.0 Consensus size: 32
68643466 TTTCCATAAA
* *
68643476 ATATAGTACTTACCATAAAGGCTTT-CTTGTCC
1 ATATAGTACTTACCACAAAGGCTTTCCTT-TTC
* * *
68643508 A-A-AGT-TTTGCCACAAAAGCTTTCCTTTTC
1 ATATAGTACTTACCACAAAGGCTTTCCTTTTC
*
68643537 ATATAGTACTTACCACAAAGGCTTTCCTGTTC
1 ATATAGTACTTACCACAAAGGCTTTCCTTTTC
68643569 A
1 A
68643570 GATTTTTGCC
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
29 16 0.33
30 7 0.14
31 4 0.08
32 22 0.45
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (32 bp):
ATATAGTACTTACCACAAAGGCTTTCCTTTTC
Found at i:68643593 original size:61 final size:61
Alignment explanation
Indices: 68643476--68643593 Score: 164
Period size: 61 Copynumber: 1.9 Consensus size: 61
68643466 TTTCCATAAA
* * *
68643476 ATATAGTACTTACCATAAAGGCTTTCTTGTCCAAAGTTTTGCCACAAAAGCTTTCCTTTTC
1 ATATAGTACTTACCACAAAGGCTTTCCTGTCCAAAGTTTTGCCACAAAAGCCTTCCTTTTC
* * * **
68643537 ATATAGTACTTACCACAAAGGCTTTCCTGTTCAGATTTTTGCCACAAGGGCCTTCCT
1 ATATAGTACTTACCACAAAGGCTTTCCTGTCCAAAGTTTTGCCACAAAAGCCTTCCT
68643594 CGCACGGAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.36
Consensus pattern (61 bp):
ATATAGTACTTACCACAAAGGCTTTCCTGTCCAAAGTTTTGCCACAAAAGCCTTCCTTTTC
Found at i:68647126 original size:27 final size:28
Alignment explanation
Indices: 68647096--68647195 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 28
68647086 TTTAGTTTAC
68647096 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* **
68647123 TAAAAATATTGAAATACCC-TAGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
** * *
68647150 TAAAATTATTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
68647177 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
68647196 CCGATTTACA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 8 0.13
27 51 0.84
28 2 0.03
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:68647210 original size:27 final size:27
Alignment explanation
Indices: 68647180--68647240 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
68647170 CGACTTGTAA
68647180 AATTACCAAAGTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAT
****
68647207 AATTACCGTTTTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAT
68647234 AATTACC
1 AATTACC
68647241 GTTTTACCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAT
Found at i:68647348 original size:27 final size:27
Alignment explanation
Indices: 68647191--68647347 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
68647181 ATTACCAAAG
* *
68647191 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
68647218 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
68647245 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
68647272 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
68647299 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
68647326 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
68647348 TAAAATACCC
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:68647358 original size:81 final size:81
Alignment explanation
Indices: 68647178--68647358 Score: 209
Period size: 81 Copynumber: 2.2 Consensus size: 81
68647168 TTCGACTTGT
* * * *
68647178 AAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTTTACCCCCGATTTACATAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCCCCGATTTACAGAATTACCGT
* *
68647243 TTTACCCTCGATTTAT
66 TTTACCCTCAATTTAC
* *** * ** ** *
68647259 AGAATTACCATTTTACCCTCGATTTATAGAATTATTGTTTTACCCTTGATTTACAGAATTACTGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCCCCGATTTACAGAATTACCGT
68647324 TTTACCCTCAATTTAC
66 TTTACCCTCAATTTAC
*
68647340 AAAATTACTAAAATACCCT
1 AAAATTACCAAAATACCCT
68647359 TGGTTTCTAA
Statistics
Matches: 80, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCCCCGATTTACAGAATTACCGT
TTTACCCTCAATTTAC
Found at i:68647360 original size:54 final size:54
Alignment explanation
Indices: 68647178--68647358 Score: 164
Period size: 54 Copynumber: 3.4 Consensus size: 54
68647168 TTCGACTTGT
* * * *
68647178 AAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTTTACCCCCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
* *** * * *
68647232 ATAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
* ***** * * *
68647286 AGAATTATTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCAATTTAC
1 AAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
* *
68647340 AAAATTACTAAAATACCCT
1 AAAATTACCAAATTACCCT
68647359 TGGTTTCTAA
Statistics
Matches: 101, Mismatches: 26, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (54 bp):
AAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
Found at i:68647565 original size:27 final size:27
Alignment explanation
Indices: 68647340--68647578 Score: 201
Period size: 27 Copynumber: 8.8 Consensus size: 27
68647330 CTCAATTTAC
* *
68647340 AAAATTACTAAAATACCCTTGGTTTCT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
68647367 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
68647394 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* ***
68647421 AAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * **
68647448 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
68647475 AAAGTTA-CAGAAATACCCTTGACTTTTT
1 AAAATTACCA-AAATACCCTTG-GTTTGT
*** * **
68647503 AAAAATTATGGAAATACCATTGGTTTAC
1 -AAAATTACCAAAATACCCTTGGTTTGT
**
68647531 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * * *
68647558 AGATTTACCAAGACACCCTTG
1 AAAATTACCAAAATACCCTTG
68647579 TAGGATGAAA
Statistics
Matches: 169, Mismatches: 39, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.01
27 145 0.86
28 6 0.04
29 16 0.09
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:68647639 original size:27 final size:27
Alignment explanation
Indices: 68647609--68647695 Score: 131
Period size: 27 Copynumber: 3.2 Consensus size: 27
68647599 ACCCCTATTA
*
68647609 GGTAAAGAGACCGTAAAGTCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCTGTAG
68647636 GGTAAAGAGACCGTAAAGCCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCTGTAG
* *
68647663 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAGAGACCGTAA-AGCCCCTGTAG
68647690 GGTAAA
1 GGTAAA
68647696 ATGACGAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.20
Consensus pattern (27 bp):
GGTAAAGAGACCGTAAAGCCCCTGTAG
Found at i:68648529 original size:26 final size:26
Alignment explanation
Indices: 68648500--68648598 Score: 164
Period size: 26 Copynumber: 3.8 Consensus size: 26
68648490 GAGGAAGTGC
68648500 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
68648526 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
68648552 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
68648578 AAAAAGGGCTT-TGCCCCAGTT
1 -AAAAGGGCTTATGCCCCAGTT
68648599 ATTAAAGAGG
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
26 59 0.86
27 10 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:68648802 original size:42 final size:42
Alignment explanation
Indices: 68648743--68648834 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
68648733 TAGTCTCCCC
** *
68648743 AAATGGGCTTGCATACATTC-ATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACA-TCAATTGACATTACATGTGATATTG
68648785 AAATGGGCTTGCATACATCAATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCAATTGACATTACATGTGATATTG
68648827 AAATGGGC
1 AAATGGGC
68648835 CTATAGGCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 2 0.04
42 44 0.96
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCAATTGACATTACATGTGATATTG
Found at i:68648893 original size:31 final size:32
Alignment explanation
Indices: 68648858--68648936 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 32
68648848 CGTTTACAGT
*
68648858 AAAGGCTTC-AGCCTAGTGAAATGATTTATGA
1 AAAGGCTTCTAGCCCAGTGAAATGATTTATGA
* *
68648889 AAAGGC-TCTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCTAGCCCAGTGAAATGATTTATGA
*
68648920 AAAGGCTTC-GGCCCAGT
1 AAAGGCTTCTAGCCCAGT
68648937 ATATGTCAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
30 2 0.05
31 39 0.91
32 2 0.05
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (32 bp):
AAAGGCTTCTAGCCCAGTGAAATGATTTATGA
Found at i:68651163 original size:27 final size:27
Alignment explanation
Indices: 68651133--68651231 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
68651123 TTTAGTTTAC
68651133 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* ** *
68651160 TAAAAATACTAAAATACCCTAGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
68651187 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
68651214 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
68651232 CCCAATTTAC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.12
27 53 0.88
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:68651275 original size:54 final size:54
Alignment explanation
Indices: 68651217--68651323 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 54
68651207 CGACTTGTAA
*
68651217 AATTACCAAAGTACCCCCAATTTACATAATTACCGTTTTACCCCTGATTTATAT
1 AATTACCAAAGTACCCCCAATTTACATAATTACCATTTTACCCCTGATTTATAT
*** * * *
68651271 AATTACCATTTTACCCCCGATTTACATAATTACTATTTTACCCTTGATTTATA
1 AATTACCAAAGTACCCCCAATTTACATAATTACCATTTTACCCCTGATTTATA
68651324 GAGTTACTGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (54 bp):
AATTACCAAAGTACCCCCAATTTACATAATTACCATTTTACCCCTGATTTATAT
Found at i:68651321 original size:81 final size:81
Alignment explanation
Indices: 68651244--68651438 Score: 275
Period size: 81 Copynumber: 2.4 Consensus size: 81
68651234 CAATTTACAT
* * * * *
68651244 AATTACCGTTTTACCC-CTGATTTATATAATTACCATTTTACCCCCGATTTACATAATTACTATT
1 AATTACTGTTTTACCCTC-GATTTACAAAATTACCATTTTACCCCCGATTGACAGAATTACTATT
68651308 TTACCCTTGATTTATAG
65 TTACCCTTGATTTATAG
* * * * *
68651325 AGTTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTGATAGAATTACTATTT
1 AATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCCCGATTGACAGAATTACTATTT
*
68651390 TACCCTTGACTTATAG
66 TACCCTTGATTTATAG
68651406 AATTACTGTTTTACCCTCGATTTACAAAATTAC
1 AATTACTGTTTTACCCTCGATTTACAAAATTAC
68651439 TAAAATACCC
Statistics
Matches: 101, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 100 0.99
82 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.42
Consensus pattern (81 bp):
AATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCCCGATTGACAGAATTACTATTT
TACCCTTGATTTATAG
Found at i:68651337 original size:54 final size:54
Alignment explanation
Indices: 68651228--68651440 Score: 239
Period size: 54 Copynumber: 3.9 Consensus size: 54
68651218 ATTACCAAAG
* * * *
68651228 TACCCCCAATTTACATAATTACCGTTTTACCC-CTGATTTATATAATTACCATTT
1 TACCCCCGATTTACAGAATTACCGTTTTACCCTC-GATTTATAGAATTACTATTT
* ** * * *
68651282 TACCCCCGATTTACATAATTACTATTTTACCCTTGATTTATAGAGTTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
* *
68651336 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTGATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
** * * * * *
68651390 TACCCTTGACTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTA
1 TACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTA
68651441 AAATACCCTT
Statistics
Matches: 135, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
54 135 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCCCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
Found at i:68651439 original size:27 final size:27
Alignment explanation
Indices: 68651236--68651439 Score: 212
Period size: 27 Copynumber: 7.6 Consensus size: 27
68651226 AGTACCCCCA
* *
68651236 ATTTACATAATTACCGTTTTACCC-CTG
1 ATTTACAGAATTACTGTTTTACCCTC-G
* * ** *
68651263 ATTTATATAATTACCATTTTACCCCCG
1 ATTTACAGAATTACTGTTTTACCCTCG
* * *
68651290 ATTTACATAATTACTATTTTACCCTTG
1 ATTTACAGAATTACTGTTTTACCCTCG
* *
68651317 ATTTATAGAGTTACTGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
*
68651344 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
* * * *
68651371 ATTGATAGAATTACTATTTTACCCTTG
1 ATTTACAGAATTACTGTTTTACCCTCG
* *
68651398 ACTTATAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
*
68651425 ATTTACAAAATTACT
1 ATTTACAGAATTACT
68651440 AAAATACCCT
Statistics
Matches: 150, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
27 149 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
ATTTACAGAATTACTGTTTTACCCTCG
Found at i:68651447 original size:27 final size:27
Alignment explanation
Indices: 68651417--68651584 Score: 117
Period size: 27 Copynumber: 6.2 Consensus size: 27
68651407 ATTACTGTTT
* *
68651417 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGCAAAATTACCAAAA
* * * **
68651444 TACCCTTGGTTTGTAAACCTACCAAAA
1 TACCCTCGATTTGCAAAATTACCAAAA
* *
68651471 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGCAAAATTACCAAAA
* ** *
68651498 TACCCT-TAGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTGCAAAATTACCAAAA
* *
68651525 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGCAAAATTACCAAAA
* * * *
68651552 CACCC-CTGATTTACAAAGTTACAAAAA
1 TACCCTC-GATTTGCAAAATTACCAAAA
68651579 TACCCT
1 TACCCT
68651585 TGACTTTCTA
Statistics
Matches: 112, Mismatches: 24, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
26 1 0.01
27 110 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGCAAAATTACCAAAA
Found at i:68651475 original size:54 final size:54
Alignment explanation
Indices: 68651417--68651556 Score: 167
Period size: 54 Copynumber: 2.6 Consensus size: 54
68651407 ATTACTGTTT
* ** * *
68651417 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGT-AAACCTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTGAAA-CTACCAAAA
* * *
68651471 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTAGTTTGTGAAACTACCAAAA
*
68651525 TACCCTCAATTTGTAAAATTACCAAAACACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
68651557 CTGATTTACA
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
53 1 0.01
54 68 0.93
55 4 0.05
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTAGTTTGTGAAACTACCAAAA
Found at i:68651517 original size:81 final size:81
Alignment explanation
Indices: 68651432--68651585 Score: 186
Period size: 81 Copynumber: 1.9 Consensus size: 81
68651422 TCGATTTACA
* *** * * * *
68651432 AAATTACTAAAATACCCTTGGTTTGTAAACCTACCAAAATACCCCTAGTTTGTA-AAA-TTACCA
1 AAATTACCAAAATACCCTCAATTTGTAAAACTACCAAAACACCCCT-GATT-TACAAAGTTACAA
68651495 AAATACCCTTAGTTTGTG
64 AAATACCCTTAGTTTGTG
* *
68651513 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAACACCCCTGATTTACAAAGTTACAAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAACTACCAAAACACCCCTGATTTACAAAGTTACAAAA
68651578 ATACCCTT
66 ATACCCTT
68651586 GACTTTCTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
79 2 0.03
80 6 0.10
81 53 0.87
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAACTACCAAAACACCCCTGATTTACAAAGTTACAAAA
ATACCCTTAGTTTGTG
Found at i:68651628 original size:27 final size:27
Alignment explanation
Indices: 68651595--68651646 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
68651585 TGACTTTCTA
68651595 AAAATTA-TGGAAATAC-CATTGGTTTAC
1 AAAATTACT-GAAATACTC-TTGGTTTAC
68651622 AAAATTACTGAAATACTCTTGGTTT
1 AAAATTACTGAAATACTCTTGGTTT
68651647 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (27 bp):
AAAATTACTGAAATACTCTTGGTTTAC
Found at i:68651730 original size:27 final size:27
Alignment explanation
Indices: 68651700--68651786 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
68651690 ACCTCTATTA
*
68651700 GGTAAAGAGACCGTAAAGTCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCTGTAG
*
68651727 GGTAAAGAGACTGTAAAGCCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCTGTAG
* *
68651754 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAGAGACCGTAA-AGCCCCTGTAG
68651781 GGTAAA
1 GGTAAA
68651787 ATGACGAATA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (27 bp):
GGTAAAGAGACCGTAAAGCCCCTGTAG
Found at i:68652688 original size:25 final size:26
Alignment explanation
Indices: 68652591--68652688 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
68652581 GAGGAAGTGC
68652591 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
68652617 AAAAGGGCTTATGCCCCTGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68652643 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
68652669 ACAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
68652689 ATTAAAGAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 10 0.15
26 55 0.85
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:68652898 original size:42 final size:42
Alignment explanation
Indices: 68652833--68652924 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
68652823 TAGTCTCCCC
* * ** *
68652833 AAATAGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
68652875 AAATGGGCTTGCATACGTCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
68652917 AAATGGGC
1 AAATGGGC
68652925 CTATAGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:68652993 original size:31 final size:31
Alignment explanation
Indices: 68652948--68653026 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 31
68652938 CGTTTACAGT
*
68652948 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
68652979 AAAGGC-TCTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTC-GGCCCAGTGAAATGATTTATGA
68653010 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
68653027 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
30 2 0.05
31 40 0.91
32 2 0.05
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:68654792 original size:50 final size:50
Alignment explanation
Indices: 68654723--68654838 Score: 209
Period size: 50 Copynumber: 2.4 Consensus size: 50
68654713 TTTCTATATT
68654723 TTTATA-AAATTTTTA-AATATTTTTCTATATTTTTCTATTTTCTATTAA
1 TTTATATAAATTTTTATAATATTTTTCTATATTTTTCTATTTTCTATTAA
*
68654771 TTTATATAAATTTATATAATATTTTTCTATATTTTTCTATTTTCTATTAA
1 TTTATATAAATTTTTATAATATTTTTCTATATTTTTCTATTTTCTATTAA
68654821 TTTATATAAATTTTTATA
1 TTTATATAAATTTTTATA
68654839 CTCTTTATTT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
48 6 0.09
49 8 0.12
50 50 0.78
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (50 bp):
TTTATATAAATTTTTATAATATTTTTCTATATTTTTCTATTTTCTATTAA
Found at i:68654800 original size:40 final size:40
Alignment explanation
Indices: 68654749--68654835 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
68654739 ATATTTTTCT
68654749 ATATTTTTCTAT-TTTCTAT-TAATTTATATAAATTTATATA
1 ATATTTTTCTATATTT-T-TCTAATTTATATAAATTTATATA
* * *
68654789 ATATTTTTCTATATTTTTCTATTTTCTATTAATTTATATA
1 ATATTTTTCTATATTTTTCTAATTTATATAAATTTATATA
68654829 A-ATTTTT
1 ATATTTTT
68654836 ATACTCTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
39 7 0.17
40 32 0.76
41 3 0.07
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (40 bp):
ATATTTTTCTATATTTTTCTAATTTATATAAATTTATATA
Found at i:68654833 original size:60 final size:60
Alignment explanation
Indices: 68654720--68654838 Score: 134
Period size: 60 Copynumber: 2.0 Consensus size: 60
68654710 ATGTTTCTAT
* * * *
68654720 ATTTTTATAAAATTTTTAAATATTTTTCTATATTTTTCTATTTTCTATTAATTTATATAA
1 ATTTATATAAAATTTTTAAATATTTTTCTATATTTTTCTAATTTATATAAATTTATATAA
* ** *
68654780 ATTTATATAATATTTTTCTATATTTTTCTAT-TTTCTAT-TAATTTATATAAATTTTTATA
1 ATTTATATAAAATTTTTAAATATTTTTCTATATTT-T-TCTAATTTATATAAATTTATATA
68654839 CTCTTTATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
59 3 0.06
60 45 0.92
61 1 0.02
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (60 bp):
ATTTATATAAAATTTTTAAATATTTTTCTATATTTTTCTAATTTATATAAATTTATATAA
Found at i:68654838 original size:10 final size:10
Alignment explanation
Indices: 68654695--68654838 Score: 66
Period size: 10 Copynumber: 14.4 Consensus size: 10
68654685 TTTATTTATA
68654695 TATATAATTTT
1 TATA-AATTTT
*
68654706 TAT-AATGTT
1 TATAAATTTT
* *
68654715 TCTATATTTT
1 TATAAATTTT
68654725 TATAAAATTTT
1 TAT-AAATTTT
68654736 TA-AATATTTT
1 TATAA-ATTTT
* *
68654746 TCTATATTTT
1 TATAAATTTT
*
68654756 TCT--ATTTT
1 TATAAATTTT
* *
68654764 CTATTAATTTA
1 -TATAAATTTT
*
68654775 TATAAATTTA
1 TATAAATTTT
68654785 TATAATATTTT
1 TATAA-ATTTT
* *
68654796 TCTATATTTT
1 TATAAATTTT
*
68654806 TCT--ATTTT
1 TATAAATTTT
* *
68654814 CTATTAATTTA
1 -TATAAATTTT
68654825 TATAAATTTT
1 TATAAATTTT
68654835 TATA
1 TATA
68654839 CTCTTTATTT
Statistics
Matches: 104, Mismatches: 18, Indels: 23
0.72 0.12 0.16
Matches are distributed among these distances:
8 10 0.10
9 13 0.12
10 54 0.52
11 27 0.26
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.62
Consensus pattern (10 bp):
TATAAATTTT
Found at i:68662486 original size:16 final size:17
Alignment explanation
Indices: 68662456--68662488 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
68662446 CCACACTCTG
*
68662456 AATTTCATAAGTGAATA
1 AATTTCATAAATGAATA
68662473 AATTT-ATAAATGAATA
1 AATTTCATAAATGAATA
68662489 TAGGATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (17 bp):
AATTTCATAAATGAATA
Found at i:68663966 original size:31 final size:31
Alignment explanation
Indices: 68663923--68663986 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
68663913 CCTTTTCATA
*
68663923 TTTCATAATTCATAACACTGGGTCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
68663954 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
68663985 TT
1 TT
68663987 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:68664234 original size:23 final size:23
Alignment explanation
Indices: 68664200--68664319 Score: 213
Period size: 23 Copynumber: 5.1 Consensus size: 23
68664190 CCTAGCCTCT
*
68664200 TTTAATAGCTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68664223 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68664246 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
68664270 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68664293 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
68664317 TTT
1 TTT
68664320 TGCACTTCCT
Statistics
Matches: 94, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
23 48 0.51
24 46 0.49
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:68664252 original size:47 final size:47
Alignment explanation
Indices: 68664179--68664319 Score: 239
Period size: 47 Copynumber: 3.0 Consensus size: 47
68664169 GCTTTATCAT
* *
68664179 ATAACTGGAGGCCT-AGCCTCTTTTAATAGCTGGGGCATAAGCCCTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTA
68664227 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
68664274 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
68664320 TGCACTTCCT
Statistics
Matches: 90, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 78 0.87
48 12 0.13
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:68664255 original size:24 final size:24
Alignment explanation
Indices: 68664179--68664320 Score: 227
Period size: 24 Copynumber: 6.0 Consensus size: 24
68664169 GCTTTATCAT
*
68664179 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
68664204 ATAGCTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68664227 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68664251 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68664274 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
68664298 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
68664321 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
23 45 0.41
24 55 0.50
25 11 0.10
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:68664392 original size:9 final size:9
Alignment explanation
Indices: 68664378--68664434 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
68664368 ATCTCGTGTG
68664378 CATATCATA
1 CATATCATA
*
68664387 CATATCATGTG
1 CATATCA--TA
68664398 CATATCATA
1 CATATCATA
* *
68664407 CATGTCATGTG
1 CATATCA--TA
68664418 CATATCATA
1 CATATCATA
68664427 CATATCAT
1 CATATCAT
68664435 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:68664397 original size:20 final size:20
Alignment explanation
Indices: 68664374--68664436 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
68664364 GAACATCTCG
68664374 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
68664394 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
68664414 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
68664434 TGT
1 TGT
68664437 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:68669328 original size:41 final size:41
Alignment explanation
Indices: 68669271--68669352 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
68669261 AGAATAATAA
68669271 AACATAGTTTTAGACCTAATATACGACATTTGAGAAGCCTT
1 AACATAGTTTTAGACCTAATATACGACATTTGAGAAGCCTT
68669312 AACATAGTTTTAGACCTAATATACGACATTTGAGAAGCCTT
1 AACATAGTTTTAGACCTAATATACGACATTTGAGAAGCCTT
68669353 TATTTAAGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32
Consensus pattern (41 bp):
AACATAGTTTTAGACCTAATATACGACATTTGAGAAGCCTT
Found at i:68669387 original size:31 final size:31
Alignment explanation
Indices: 68669352--68669419 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
68669342 TGAGAAGCCT
* *
68669352 TTATTTAAGTACTTTCAAAAAGT-TTTGACCC
1 TTATTTAAGCACTTTCAAAAA-TATCTGACCC
* *
68669383 TTATTTGAGCACTTTCATAAATATCTGACCC
1 TTATTTAAGCACTTTCAAAAATATCTGACCC
68669414 TTATTT
1 TTATTT
68669420 GACCATTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.03
31 31 0.97
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (31 bp):
TTATTTAAGCACTTTCAAAAATATCTGACCC
Found at i:68677670 original size:18 final size:18
Alignment explanation
Indices: 68677644--68677691 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
68677634 TTTCATGATT
* *
68677644 CTGGCCAAAATTATACTA
1 CTGGTCAAAATTATAATA
*
68677662 CTGGTCAAAATTATAATG
1 CTGGTCAAAATTATAATA
*
68677680 CTAGTCAAAATT
1 CTGGTCAAAATT
68677692 GCTCTTTGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (18 bp):
CTGGTCAAAATTATAATA
Found at i:68679214 original size:41 final size:41
Alignment explanation
Indices: 68679157--68679239 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
68679147 GTCTGCCAGT
68679157 ATCCTACCGCCTCTGCCGATTGGGTTTAACCCATTCCAGAA
1 ATCCTACCGCCTCTGCCGATTGGGTTTAACCCATTCCAGAA
*
68679198 ATCCTACTGCCTCTGCCGATTGGGTTTAACCCATTCCAGAA
1 ATCCTACCGCCTCTGCCGATTGGGTTTAACCCATTCCAGAA
68679239 A
1 A
68679240 CTATCTTGGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.28
Consensus pattern (41 bp):
ATCCTACCGCCTCTGCCGATTGGGTTTAACCCATTCCAGAA
Found at i:68683739 original size:6 final size:6
Alignment explanation
Indices: 68683728--68683784 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
68683718 TCACAATAAA
* * *** *
68683728 AAAATT AAAATT AAAATT AAAACT AAAGTT ATCTTT AAATTT AAAA-T
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
68683775 AAAATT AAAA
1 AAAATT AAAA
68683785 ATATATCATA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
5 5 0.12
6 36 0.88
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (6 bp):
AAAATT
Found at i:68703484 original size:5 final size:6
Alignment explanation
Indices: 68703455--68703482 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
68703445 AAAATTTGAG
68703455 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
68703483 TATCCCCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:68708540 original size:17 final size:17
Alignment explanation
Indices: 68708518--68708555 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
68708508 GCAGTCTTTA
* *
68708518 TCAGTTTTGCTCCAGTC
1 TCAGTTTTACTACAGTC
68708535 TCAG-TTTACTACAGTC
1 TCAGTTTTACTACAGTC
68708551 TCAGT
1 TCAGT
68708556 ATACACTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.39
Consensus pattern (17 bp):
TCAGTTTTACTACAGTC
Found at i:68723133 original size:31 final size:25
Alignment explanation
Indices: 68723070--68723120 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
68723060 TTATAGAAAG
68723070 AATATTATAAGCATTTGCAAAATGA
1 AATATTATAAGCATTTGCAAAATGA
68723095 AATATTATAAGCATTTGCAAAATGA
1 AATATTATAAGCATTTGCAAAATGA
68723120 A
1 A
68723121 TAATAGCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31
Consensus pattern (25 bp):
AATATTATAAGCATTTGCAAAATGA
Found at i:68723915 original size:48 final size:46
Alignment explanation
Indices: 68723740--68723956 Score: 219
Period size: 47 Copynumber: 4.7 Consensus size: 46
68723730 TATACGTGCT
* * * * *
68723740 GATGGATGTCCCAGGCATGTCTTACACTAGCA--CAACTCTTA-GCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTC-TAGGCC
* * * *
68723784 GATGCGTGTCCAAGACACGTCTTACACTGGCTA-TCATCATCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCTAGGCC
*
68723831 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAGGCC
* * * *
68723877 GATGTCATGTCCCAGACATGGTCTTATACTGGCACTCATAATGT-GGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCTAGGCC
68723925 GATGCATGTCCCAGACATGTCTTACACTGGCA
1 GATGCATGTCCCAGACATGTCTTACACTGGCA
68723957 TACAAGAAAT
Statistics
Matches: 145, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
44 25 0.17
45 1 0.01
46 28 0.19
47 65 0.45
48 24 0.17
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAGGCC
Found at i:68723935 original size:94 final size:90
Alignment explanation
Indices: 68723687--68723956 Score: 258
Period size: 94 Copynumber: 2.9 Consensus size: 90
68723677 CATCATCGAG
* * * * * *
68723687 GCCGATGCCATCTCCCAGACACGGTTTTATACTAGCTCTCGTATATACGT-GCTGATGGATGTCC
1 GCCGATG-CATGTCCCAGACA-GGTCTTATACTGGCACTC--ATA-ATGTGGCTGATGCATGTCC
* *
68723751 CAGGCATGTCTTACACTAGCACAACTCTTA
61 CAGACATGTCTTACACTGGCACAACTCTTA
* * * * * * * *
68723781 GCTGATGCGTGTCCAAGACACGTCTTACACTGGCTA-TCATCATCGAGGCCGATGCATGTCCCAG
1 GCCGATGCATGTCCCAGACAGGTCTTATACTGGC-ACTCATAAT-GTGGCTGATGCATGTCCCAG
*
68723845 ACATGTCTTACACTGGCAC-TCATCTCTA
64 ACATGTCTTACACTGGCACAAC-TCT-TA
68723873 CGCCGATGTCATGTCCCAGACATGGTCTTATACTGGCACTCATAATGTGGCTGATGCATGTCCCA
1 -GCCGATG-CATGTCCCAGACA-GGTCTTATACTGGCACTCATAATGTGGCTGATGCATGTCCCA
68723938 GACATGTCTTACACTGGCA
63 GACATGTCTTACACTGGCA
68723957 TACAAGAAAT
Statistics
Matches: 142, Mismatches: 25, Indels: 18
0.77 0.14 0.10
Matches are distributed among these distances:
89 1 0.01
90 4 0.03
91 35 0.25
92 14 0.10
93 16 0.11
94 54 0.38
95 18 0.13
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (90 bp):
GCCGATGCATGTCCCAGACAGGTCTTATACTGGCACTCATAATGTGGCTGATGCATGTCCCAGAC
ATGTCTTACACTGGCACAACTCTTA
Found at i:68730340 original size:55 final size:55
Alignment explanation
Indices: 68730234--68730354 Score: 145
Period size: 55 Copynumber: 2.2 Consensus size: 55
68730224 AGCTCATGTG
* * * * *
68730234 CAACACTAACTTCAACACACAGCCATGGCACATGCCCGTGTGACCTGCCCGTGTA
1 CAACACTGACTTTAAGACACAGCCATGGCACACGCCCGTGTGACCTACCCGTGTA
* * * *
68730289 CGATACTGACTTTAAGACACGGCCATGGTC-CACGCCCGTGTGGCCTACCCGTGTA
1 CAACACTGACTTTAAGACACAGCCATGG-CACACGCCCGTGTGACCTACCCGTGTA
68730344 CAACACTGACT
1 CAACACTGACT
68730355 AAAAAGTTTA
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
55 53 0.98
56 1 0.02
ACGTcount: A:0.25, C:0.35, G:0.21, T:0.20
Consensus pattern (55 bp):
CAACACTGACTTTAAGACACAGCCATGGCACACGCCCGTGTGACCTACCCGTGTA
Found at i:68731345 original size:47 final size:45
Alignment explanation
Indices: 68731217--68731389 Score: 129
Period size: 47 Copynumber: 3.7 Consensus size: 45
68731207 TACACGTGCT
* * * *
68731217 GATGCATGTCCCAGACATGTCTTACACTAGCAC--AACTCTTA-GCT
1 GATGCATGTCCCA-ACATGTCTTACACTGGCACTTATCTC-GACGCC
* ** *
68731261 GATGCGTGTCCCAAACACATCTTACACTGGCTA-TTATCATCGAGGCC
1 GATGCATGTCCC-AACATGTCTTACACTGGC-ACTTATC-TCGACGCC
*
68731308 GATGCATGTCCCTAACATGTCTTACACTGGCACTTATCTCTACGCC
1 GATGCATGTCCC-AACATGTCTTACACTGGCACTTATCTCGACGCC
* * *
68731354 GATGCCATCTCCCAGACATGGTCTTATACTAGCACT
1 GATG-CATGTCCCA-ACAT-GTCTTACACTGGCACT
68731390 CATAATGTGG
Statistics
Matches: 103, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
44 25 0.24
45 2 0.02
46 15 0.15
47 47 0.46
48 14 0.14
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAACATGTCTTACACTGGCACTTATCTCGACGCC
Found at i:68744620 original size:20 final size:20
Alignment explanation
Indices: 68744597--68744637 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
68744587 TAAGAAAATA
68744597 TTTAGATACCTTAGAAACAC
1 TTTAGATACCTTAGAAACAC
68744617 TTTAGATACCTTAGAAACAC
1 TTTAGATACCTTAGAAACAC
68744637 T
1 T
68744638 CCTAGTTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (20 bp):
TTTAGATACCTTAGAAACAC
Found at i:68768520 original size:19 final size:20
Alignment explanation
Indices: 68768483--68768521 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
68768473 ATTATGAGGT
**
68768483 AATATTGATTATAGTACATA
1 AATATTGATTATAACACATA
68768503 AATATT-ATTATAACACATA
1 AATATTGATTATAACACATA
68768522 TATTACTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (20 bp):
AATATTGATTATAACACATA
Found at i:68771582 original size:21 final size:21
Alignment explanation
Indices: 68771558--68771615 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
68771548 TGATGCTGGG
68771558 AGGATGTCATTTGATGCACCA
1 AGGATGTCATTTGATGCACCA
* *
68771579 AGGATGTCTTTTGATGCAGCA
1 AGGATGTCATTTGATGCACCA
* *
68771600 AGAATGTCATGTGATG
1 AGGATGTCATTTGATG
68771616 ATCCCAGATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (21 bp):
AGGATGTCATTTGATGCACCA
Found at i:68774708 original size:14 final size:14
Alignment explanation
Indices: 68774686--68774719 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
68774676 ACAAGAAATT
68774686 ATAAAAAAAGAATA
1 ATAAAAAAAGAATA
* *
68774700 ATAATAAAATAATA
1 ATAAAAAAAGAATA
68774714 ATAAAA
1 ATAAAA
68774720 TAGGAGTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (14 bp):
ATAAAAAAAGAATA
Found at i:68774710 original size:11 final size:11
Alignment explanation
Indices: 68774696--68774721 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
68774686 ATAAAAAAAG
68774696 AATAATAATAA
1 AATAATAATAA
68774707 AATAATAATAA
1 AATAATAATAA
68774718 AATA
1 AATA
68774722 GGAGTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAATAATAA
Found at i:68774875 original size:10 final size:9
Alignment explanation
Indices: 68774825--68774905 Score: 67
Period size: 9 Copynumber: 8.8 Consensus size: 9
68774815 TGTGTATATA
68774825 TATAATTTT
1 TATAATTTT
*
68774834 TATAATTTG
1 TATAATTTT
* *
68774843 TACAACTTT
1 TATAATTTT
*
68774852 T-TGATTATT
1 TATAATT-TT
68774861 TATAATTTCT
1 TATAATTT-T
68774871 TATAATTTT
1 TATAATTTT
*
68774880 TAGTAATTAT
1 TA-TAATTTT
68774890 TAT-ATTTT
1 TATAATTTT
68774898 TAATAATT
1 T-ATAATT
68774906 ATCTAAGAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
8 7 0.12
9 25 0.45
10 24 0.43
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (9 bp):
TATAATTTT
Found at i:68776500 original size:63 final size:65
Alignment explanation
Indices: 68776433--68776560 Score: 233
Period size: 65 Copynumber: 2.0 Consensus size: 65
68776423 ATGATTAATT
68776433 ATTTTTAAAGTTTATAATTTTAAAT-A-ATATATTCAAATAATTATAATTAAAATAAAATAAATA
1 ATTTTTAAAGTTTATAATTTTAAATAATATATATTCAAATAATTATAATTAAAATAAAATAAATA
*
68776496 ATTTTTAAAGTTTATAATTTTAAATAATATATATTCGAATAATTATAATTAAAATAAAATAAATA
1 ATTTTTAAAGTTTATAATTTTAAATAATATATATTCAAATAATTATAATTAAAATAAAATAAATA
68776561 TAAAATATAA
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
63 25 0.40
64 1 0.02
65 36 0.58
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (65 bp):
ATTTTTAAAGTTTATAATTTTAAATAATATATATTCAAATAATTATAATTAAAATAAAATAAATA
Found at i:68776584 original size:33 final size:32
Alignment explanation
Indices: 68776545--68776624 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 32
68776535 TAATTATAAT
*
68776545 TAAAATAAAATAAATATAAAATATAAA-TAGAT
1 TAAAATAAAATAAATATAAAAT-TAAATTAGAA
* *
68776577 TGAAAATAAAATAATATCTAAACTTAAATTAGAA
1 T-AAAATAAAATAA-ATATAAAATTAAATTAGAA
*
68776611 TAAACTAAAATAAA
1 TAAAATAAAATAAA
68776625 GCTTAAAGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
32 2 0.05
33 27 0.66
34 12 0.29
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (32 bp):
TAAAATAAAATAAATATAAAATTAAATTAGAA
Found at i:68777583 original size:60 final size:60
Alignment explanation
Indices: 68777487--68777602 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 60
68777477 TAACACATGT
* ** * *
68777487 TTATACGATGTGGGTTCACCTTTATGACGGTGTGAACCAACATTGTGTGGTCTCATAGAA
1 TTATACGATGTGGGTTCACCTATATGACGGAATGAACCAACATCGTGTAGTCTCATAGAA
* * * *
68777547 TTATACGATGTGGGTTCGCCTATATGATGGAATGAACCTATATCGTGTAGTCTCAT
1 TTATACGATGTGGGTTCACCTATATGACGGAATGAACCAACATCGTGTAGTCTCAT
68777603 CGAAGGGTAT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (60 bp):
TTATACGATGTGGGTTCACCTATATGACGGAATGAACCAACATCGTGTAGTCTCATAGAA
Found at i:68778341 original size:66 final size:66
Alignment explanation
Indices: 68778195--68778342 Score: 244
Period size: 66 Copynumber: 2.2 Consensus size: 66
68778185 CCAAGCCGTA
* * *
68778195 TGCTAGGCCATGTAAAAACTGAAGGGTATACTGACTTGTGCCACATGGCCAAGCCACACGCCCAT
1 TGCTAGGCCATGTGAAAACTGAAGGGTATACTGACTTGTGCCAAACGGCCAAGCCACACGCCCAT
68778260 G
66 G
*
68778261 TGCTAGGCCGTGTGAAAACT-AGAGGGTATACTGACTTGTGCCAAACGGCCAAGCCACACGCCCA
1 TGCTAGGCCATGTGAAAACTGA-AGGGTATACTGACTTGTGCCAAACGGCCAAGCCACACGCCCA
68778325 TG
65 TG
68778327 TGCTAGGCCATGTGAA
1 TGCTAGGCCATGTGAA
68778343 GCTACTGACT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
65 1 0.01
66 75 0.99
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (66 bp):
TGCTAGGCCATGTGAAAACTGAAGGGTATACTGACTTGTGCCAAACGGCCAAGCCACACGCCCAT
G
Found at i:68778412 original size:30 final size:30
Alignment explanation
Indices: 68778377--68778442 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
68778367 GTTACAAGAG
68778377 ACACACAACCATGTCACCTGGCCGTGTGTC
1 ACACACAACCATGTCACCTGGCCGTGTGTC
68778407 ACACACAACCATGTCACCTGGCCGTGTGTC
1 ACACACAACCATGTCACCTGGCCGTGTGTC
68778437 ACACAC
1 ACACAC
68778443 GGCTGAGACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.26, C:0.38, G:0.18, T:0.18
Consensus pattern (30 bp):
ACACACAACCATGTCACCTGGCCGTGTGTC
Found at i:68794723 original size:11 final size:11
Alignment explanation
Indices: 68794707--68794732 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
68794697 ATCCACTTAT
68794707 ACTAGTGTAAA
1 ACTAGTGTAAA
68794718 ACTAGTGTAAA
1 ACTAGTGTAAA
68794729 ACTA
1 ACTA
68794733 AATTACTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (11 bp):
ACTAGTGTAAA
Found at i:68795241 original size:17 final size:18
Alignment explanation
Indices: 68795219--68795255 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
68795209 AAGTTCATAA
68795219 ATATATTACTTA-TACTT
1 ATATATTACTTATTACTT
68795236 ATATATTACTTATTACTT
1 ATATATTACTTATTACTT
68795254 AT
1 AT
68795256 TTAGGTGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.35, C:0.11, G:0.00, T:0.54
Consensus pattern (18 bp):
ATATATTACTTATTACTT
Found at i:68795875 original size:21 final size:21
Alignment explanation
Indices: 68795830--68795875 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
68795820 ATATTTGATA
* *
68795830 AATTATAATAATTACATTGTC
1 AATTAGAATAATTAAATTGTC
68795851 AATTAGAATAATTAAATCTGT-
1 AATTAGAATAATTAAAT-TGTC
68795872 AATT
1 AATT
68795876 GTTTAATTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.41
Consensus pattern (21 bp):
AATTAGAATAATTAAATTGTC
Found at i:68797329 original size:116 final size:118
Alignment explanation
Indices: 68797117--68797349 Score: 409
Period size: 116 Copynumber: 2.0 Consensus size: 118
68797107 TCTCATGGCC
**
68797117 AAATTGGGTAAGTTTCCTTGGCCCTTTTTAGTAATTTTGATATTTTTGAAATTGGGATAGCTTAA
1 AAATTGGGTAAGTTTCCTTGGCCCTTTTTAGTAATTTTGATATTTTTGAAACCGGGATAGCTTAA
68797182 CCTATCTATTTAGGGGATCAATTTGAGAAGTTATCAAAGTATTGAAAATGGGA
66 CCTATCTATTTAGGGGATCAATTTGAGAAGTTATCAAAGTATTGAAAATGGGA
68797235 AAATTGGGTAAGTTTCCTTGGCCCTTTTTAGTAA-TTTGATATTTTTG-AACCGGGATAGCTTAA
1 AAATTGGGTAAGTTTCCTTGGCCCTTTTTAGTAATTTTGATATTTTTGAAACCGGGATAGCTTAA
*
68797298 TCTATCTATTT-GAGGGATCAATTTGAGAAGTTATCAAAGTATTGAAAATGGG
66 CCTATCTATTTAG-GGGATCAATTTGAGAAGTTATCAAAGTATTGAAAATGGG
68797350 TCATGGATGT
Statistics
Matches: 111, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
115 1 0.01
116 63 0.57
117 13 0.12
118 34 0.31
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (118 bp):
AAATTGGGTAAGTTTCCTTGGCCCTTTTTAGTAATTTTGATATTTTTGAAACCGGGATAGCTTAA
CCTATCTATTTAGGGGATCAATTTGAGAAGTTATCAAAGTATTGAAAATGGGA
Found at i:68801533 original size:28 final size:29
Alignment explanation
Indices: 68801478--68801535 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
68801468 TACAGTGGTT
*
68801478 TTCACATGGCCTGGCATACGCCCGTGTCC
1 TTCACATGGCCTGGCACACGCCCGTGTCC
68801507 TTCACATGGCCAT-G-ACACGCCCGTGTCC
1 TTCACATGGCC-TGGCACACGCCCGTGTCC
68801535 T
1 T
68801536 AGCCTGTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.52
29 12 0.44
30 1 0.04
ACGTcount: A:0.16, C:0.38, G:0.22, T:0.24
Consensus pattern (29 bp):
TTCACATGGCCTGGCACACGCCCGTGTCC
Found at i:68802674 original size:46 final size:45
Alignment explanation
Indices: 68802549--68802760 Score: 117
Period size: 46 Copynumber: 4.6 Consensus size: 45
68802539 ATGCCGATGC
* * *
68802549 CATGTCCCAGACATAGTCTTACACTAACACATC-TC-GTGGCCGATG
1 CATGTCCCAGACATA-TCTTACACTAGCAC-TCGTCTGAGGCCGAAG
* ** * * *
68802594 CACGTCTTAGACATGTCTTACACTGGC-TTACGTCTGGAGGCCGAAG
1 CATGTCCCAGACATATCTTACACTAGCACT-CGTCT-GAGGCCGAAG
* ** *
68802640 CATGTCCCAGACATATCTTACACTAGCACTCGTCTCAATTCC-AGTG
1 CATGTCCCAGACATATCTTACACTAGCACTCGTCT-GAGGCCGA-AG
* * * * * ** *
68802686 CCATGTCCCAGACATACTCTTACACTGGCTCTCATAATGTGGTTGATG
1 -CATGTCCCAGACATA-TCTTACACTAGCACTCGT-CTGAGGCCGAAG
*
68802734 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATATCTTACACTAGC
68802761 TCACACAAGT
Statistics
Matches: 125, Mismatches: 32, Indels: 19
0.71 0.18 0.11
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 12 0.10
45 12 0.10
46 50 0.40
47 30 0.24
48 17 0.14
49 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATATCTTACACTAGCACTCGTCTGAGGCCGAAG
Found at i:68818039 original size:30 final size:30
Alignment explanation
Indices: 68818003--68818067 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
68817993 CAAGTAGCTG
** *
68818003 AAGCTAGTTTAAATCGCGTACTTAATGCCA
1 AAGCTAGTTTAAATCGCACACTCAATGCCA
*
68818033 AAGCTAGTTTAAATCGCACACTCAGTGCCA
1 AAGCTAGTTTAAATCGCACACTCAATGCCA
68818063 AAGCT
1 AAGCT
68818068 TCCGATTCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTCAATGCCA
Found at i:68820019 original size:47 final size:46
Alignment explanation
Indices: 68819953--68820079 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 46
68819943 CTTCTCGAGG
* * **
68819953 CCGAAGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT-A
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATAAC-ATGA
* * * * *
68819999 CCGGTGCCATGTCCCAGACATCGTCTTACACTGGCTCTCATAACGTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATAACATGA
68820047 CCGATGCATGTCCCAGACATGTCTTACACTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
68820080 TCACACAAGT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
46 16 0.24
47 29 0.43
48 22 0.33
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATAACATGA
Found at i:68822709 original size:46 final size:46
Alignment explanation
Indices: 68822460--68822767 Score: 153
Period size: 46 Copynumber: 6.6 Consensus size: 46
68822450 ATGCCGACGC
* ** * * *
68822460 CATGTCCCAGACATGGTCTTACACTGGCTAGCACATTAAAGTTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATAAAGCTGATG
* * ** * *
68822507 CCATGTCCCAGACAGGTCTTACACT-GCCTCTCAT-CTATCGGTTTCAATG
1 -CATGTCCCAGACATGTCTTACACTAG-CTCTCATAATA-AAG-CT-GATG
* * * * * * *
68822556 CCATGTACCAGACAGGTCTTACACT-G-ACACACAA-CAAGCTGAAG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTCATAATAAAGCTGATG
* * * * *
68822600 CCATGTCTCAGACAGGTCTTACACTAGCT-TGTATATATCGAGGCTGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCT-CATA-AT-AAAGCTGATG
* * *
68822649 CATATCCCAGACATGTCTTACACTAGCTCTCGT-CTCAAAGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAAT-AAAGCTGATG
* * * *** *
68822695 CATGTCCCATACATGTCTTACATTAACTCTCATAATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAATAAAGCTGATG
68822741 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
68822768 ACACATATCA
Statistics
Matches: 198, Mismatches: 49, Indels: 28
0.72 0.18 0.10
Matches are distributed among these distances:
44 25 0.13
45 2 0.01
46 74 0.37
47 20 0.10
48 41 0.21
49 36 0.18
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATAAAGCTGATG
Found at i:68826258 original size:40 final size:40
Alignment explanation
Indices: 68826214--68826526 Score: 332
Period size: 40 Copynumber: 7.9 Consensus size: 40
68826204 GCCTTCAGTA
* * *
68826214 GTACCAAAGTACAAATAAGGGCATGTATGTGCATTTAGGG
1 GTACCGAAGTACAAATAGGGGCACGTATGTGCATTTAGGG
* **
68826254 GTACCGTAGTACAAATAGGGGCACAAATGTGCATTTAGGG
1 GTACCGAAGTACAAATAGGGGCACGTATGTGCATTTAGGG
* ** *
68826294 GTACCGTAGTACAAATAGGGGCACAAATGTGCACTTTA-GA
1 GTACCGAAGTACAAATAGGGGCACGTATGTGCA-TTTAGGG
* * * **
68826334 GCACTGAAGTACAAATAGGGGCACGTATGTGCATTCAATG
1 GTACCGAAGTACAAATAGGGGCACGTATGTGCATTTAGGG
* *
68826374 GTACC-ACAGTACAAA-AAGGGCATGTATGTGCATTTAGGG
1 GTACCGA-AGTACAAATAGGGGCACGTATGTGCATTTAGGG
* * * * *
68826413 GTA-CTAAGTACAAA-CGGTGGCACGTATATGCATTCAAGG
1 GTACCGAAGTACAAATAGG-GGCACGTATGTGCATTTAGGG
* *
68826452 GTACTGAAGTACAAACAGGGGCACGTATGTGC-TTTCAGGG
1 GTACCGAAGTACAAATAGGGGCACGTATGTGCATTT-AGGG
68826492 GTACCGAAGTACAAATAGGGGCACGTATGTGCATT
1 GTACCGAAGTACAAATAGGGGCACGTATGTGCATT
68826527 CATACAATAA
Statistics
Matches: 228, Mismatches: 36, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
38 10 0.04
39 49 0.21
40 161 0.71
41 8 0.04
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (40 bp):
GTACCGAAGTACAAATAGGGGCACGTATGTGCATTTAGGG
Found at i:68826274 original size:20 final size:20
Alignment explanation
Indices: 68826249--68826314 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
68826239 TATGTGCATT
68826249 TAGGGGTACCGTAGTACAAA
1 TAGGGGTACCGTAGTACAAA
* ** * **
68826269 TAGGGGCA-CAAATGTGCATT
1 TAGGGGTACCGTA-GTACAAA
68826289 TAGGGGTACCGTAGTACAAA
1 TAGGGGTACCGTAGTACAAA
68826309 TAGGGG
1 TAGGGG
68826315 CACAAATGTG
Statistics
Matches: 32, Mismatches: 12, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (20 bp):
TAGGGGTACCGTAGTACAAA
Found at i:68832887 original size:16 final size:16
Alignment explanation
Indices: 68832866--68832897 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
68832856 CATTAGTTAA
68832866 TATGAAAAGTTATTAC
1 TATGAAAAGTTATTAC
68832882 TATGAAAAGTTATTAC
1 TATGAAAAGTTATTAC
68832898 CATAGGCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (16 bp):
TATGAAAAGTTATTAC
Found at i:68840413 original size:17 final size:18
Alignment explanation
Indices: 68840380--68840413 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68840370 ATGTGGCCTA
*
68840380 CCCGTGTGGGCCTACACG
1 CCCGTGTGGGCCCACACG
68840398 CCCGTGT-GGCCCACAC
1 CCCGTGTGGGCCCACAC
68840414 AGCCTAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.44, G:0.29, T:0.15
Consensus pattern (18 bp):
CCCGTGTGGGCCCACACG
Found at i:68849506 original size:13 final size:12
Alignment explanation
Indices: 68849472--68849509 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
68849462 TTAATTTAGG
68849472 TTTA-GTTTTC-
1 TTTAGGTTTTCT
68849482 TTTAGGTTTTCT
1 TTTAGGTTTTCT
68849494 TTTAGGTTTTTCT
1 TTTAGG-TTTTCT
68849507 TTT
1 TTT
68849510 TCCATTTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.16
11 6 0.24
12 6 0.24
13 9 0.36
ACGTcount: A:0.08, C:0.08, G:0.13, T:0.71
Consensus pattern (12 bp):
TTTAGGTTTTCT
Found at i:68850467 original size:40 final size:39
Alignment explanation
Indices: 68850379--68850522 Score: 146
Period size: 40 Copynumber: 3.7 Consensus size: 39
68850369 CACACTAGTT
*
68850379 TGTGGACAAGCCACCAGTATTGTAAATAAACTACCAGTAC
1 TGTGGACAAGCCACCAGTATTGTAAATAAACTA-CAGTAA
* * * *
68850419 TATAGACAAGCCACCAGTATTGTAGATAAACTTCAAGTAA
1 TGTGGACAAGCCACCAGTATTGTAAATAAACTAC-AGTAA
* * * * * * *
68850459 TGTGGACAAGCTACCAGTGTTGCAAACAAGCTGCAGTAT
1 TGTGGACAAGCCACCAGTATTGTAAATAAACTACAGTAA
*
68850498 TGTGGATAAGCCACCAGTATT-TAAA
1 TGTGGACAAGCCACCAGTATTGTAAA
68850523 ACAAACTTCT
Statistics
Matches: 84, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
38 3 0.04
39 23 0.27
40 58 0.69
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (39 bp):
TGTGGACAAGCCACCAGTATTGTAAATAAACTACAGTAA
Found at i:68850517 original size:20 final size:20
Alignment explanation
Indices: 68850378--68850518 Score: 77
Period size: 20 Copynumber: 7.1 Consensus size: 20
68850368 ACACACTAGT
*
68850378 TTGTGGACAAGCCACCAGTA
1 TTGTAGACAAGCCACCAGTA
* * * *
68850398 TTGTAAATAAACTACCAGTA
1 TTGTAGACAAGCCACCAGTA
* *
68850418 CTATAGACAAGCCACCAGTA
1 TTGTAGACAAGCCACCAGTA
* * ** *
68850438 TTGTAGATAAACTTCAAGTA
1 TTGTAGACAAGCCACCAGTA
* * * *
68850458 ATGTGGACAAGCTACCAGTG
1 TTGTAGACAAGCCACCAGTA
* * **
68850478 TTGCAAACAAG-CTGCAGTA
1 TTGTAGACAAGCCACCAGTA
* *
68850497 TTGTGGATAAGCCACCAGTA
1 TTGTAGACAAGCCACCAGTA
68850517 TT
1 TT
68850519 TAAAACAAAC
Statistics
Matches: 81, Mismatches: 39, Indels: 2
0.66 0.32 0.02
Matches are distributed among these distances:
19 11 0.14
20 70 0.86
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (20 bp):
TTGTAGACAAGCCACCAGTA
Found at i:68855919 original size:40 final size:40
Alignment explanation
Indices: 68855862--68855951 Score: 144
Period size: 40 Copynumber: 2.2 Consensus size: 40
68855852 TTTATATGCT
* * *
68855862 TTCAGAGGTACCGAAGTACAAAAAGGGGCATGTATGTGCA
1 TTCAGGGGTACCAAAGTACAAAAAGGGGCACGTATGTGCA
*
68855902 TTCAGGGGTACCAAAGTACAAACAGGGGCACGTATGTGCA
1 TTCAGGGGTACCAAAGTACAAAAAGGGGCACGTATGTGCA
68855942 TTCAGGGGTA
1 TTCAGGGGTA
68855952 TCGAAATAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.32, C:0.17, G:0.31, T:0.20
Consensus pattern (40 bp):
TTCAGGGGTACCAAAGTACAAAAAGGGGCACGTATGTGCA
Found at i:68855947 original size:20 final size:20
Alignment explanation
Indices: 68855885--68855949 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
68855875 AAGTACAAAA
*
68855885 AGGGGCATGTATGTGCATTC
1 AGGGGCACGTATGTGCATTC
* ** * * **
68855905 AGGGGTACCAAAGTACAAAC
1 AGGGGCACGTATGTGCATTC
68855925 AGGGGCACGTATGTGCATTC
1 AGGGGCACGTATGTGCATTC
68855945 AGGGG
1 AGGGG
68855950 TATCGAAATA
Statistics
Matches: 30, Mismatches: 15, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.28, C:0.17, G:0.35, T:0.20
Consensus pattern (20 bp):
AGGGGCACGTATGTGCATTC
Found at i:68856735 original size:22 final size:21
Alignment explanation
Indices: 68856706--68856747 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
68856696 GATGACAAAG
* *
68856706 TTTATTTTGTTATTATTTTAC
1 TTTATTTTATTATTAATTTAC
68856727 TTTACTTTTATTATTAATTTA
1 TTTA-TTTTATTATTAATTTA
68856748 TAATTATACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (21 bp):
TTTATTTTATTATTAATTTAC
Found at i:68860489 original size:22 final size:21
Alignment explanation
Indices: 68860442--68860489 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
68860432 TCGTGCCTCT
68860442 GTATGCACTTAGATGCCCCCA
1 GTATGCACTTAGATGCCCCCA
* *
68860463 TTATGCATCTGTA-ATGCCTCCA
1 GTATGCA-CT-TAGATGCCCCCA
68860485 GTATG
1 GTATG
68860490 GTGTAGTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 6 0.27
22 14 0.64
23 2 0.09
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (21 bp):
GTATGCACTTAGATGCCCCCA
Found at i:68863272 original size:40 final size:40
Alignment explanation
Indices: 68863080--68863265 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
68863070 TTGAATGATG
* * * * *
68863080 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
68863120 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68863160 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
68863200 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
68863241 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
68863266 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68863272 original size:80 final size:79
Alignment explanation
Indices: 68863133--68863298 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 79
68863123 GGACTAAGAT
* * **
68863133 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
68863197 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
68863213 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
68863277 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
68863292 CCGAAGG
1 CCGAAGG
68863299 TACGTGATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 16 0.21
80 58 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:68868659 original size:46 final size:46
Alignment explanation
Indices: 68868600--68868775 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
68868590 TATTTGGACA
*
68868600 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
68868646 TCTGAACTCGTTGATTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
68868691 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
68868739 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68868776 GTGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 61 0.57
47 26 0.24
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:68868711 original size:93 final size:93
Alignment explanation
Indices: 68868598--68868768 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
68868588 GATATTTGGA
* * * *
68868598 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGATTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
68868663 GAGTCCGAGTTCGTGAGATGTAACTAGG
66 GAGTCCGAGTTCGTGAGATGTAACTAGG
* *
68868691 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
68868756 GAGTCCGAGTTCG
66 GAGTCCGAGTTCG
68868769 CTTATGGGTG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAGG
Found at i:68874285 original size:45 final size:46
Alignment explanation
Indices: 68874235--68874408 Score: 189
Period size: 45 Copynumber: 3.8 Consensus size: 46
68874225 TATTTGGACA
68874235 TCCGAACTCGTTGAGTTGAGTCCGAG-TCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
68874280 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
68874325 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
68874373 CCCG-AGTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68874409 GTGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 58 0.54
46 5 0.05
47 28 0.26
48 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:68874340 original size:92 final size:92
Alignment explanation
Indices: 68874233--68874401 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
68874223 GATATTTGGA
**
68874233 CATCCGAACTCGTTGAGTTGAGTCCGAG-TCACTTATGGATGCGAACGTCCGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCG-ACTCGTTGAGTT
68874297 GAGTCCGAGTTCGTGAGATGTAACTAGG
65 GAGTCCGAGTTCGTGAGATGTAACTAGG
* *
68874325 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGTCGTTGAGTTG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGACTCGTTGAGTTG
68874390 AGTCCGAGTTCG
66 AGTCCGAGTTCG
68874402 CTTATGGGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 51 0.71
93 21 0.29
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (92 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGG
Found at i:68905239 original size:28 final size:28
Alignment explanation
Indices: 68905174--68905324 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
68905164 GAGATTGGCG
* * * *
68905174 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
68905203 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
68905231 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
68905259 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
68905287 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
68905314 CTGAGTGTGCG
1 CTAAGTGTGCG
68905325 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Done.