Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 210 of 253
Found at i:69208835 original size:18 final size:18
Alignment explanation
Indices: 69208814--69208864 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
69208804 ACAATTCTTT
69208814 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCTCC
* * *
69208832 TCTCTTCATCTATTTTTTC
1 TCTCTTCTTCT-TTTCTCC
69208851 T-TCTTCTTCTTTTC
1 TCTCTTCTTCTTTTC
69208865 CTTTATAGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
17 3 0.11
18 18 0.67
19 6 0.22
ACGTcount: A:0.04, C:0.31, G:0.00, T:0.65
Consensus pattern (18 bp):
TCTCTTCTTCTTTTCTCC
Found at i:69210135 original size:28 final size:28
Alignment explanation
Indices: 69210095--69210210 Score: 146
Period size: 28 Copynumber: 4.2 Consensus size: 28
69210085 GGAGGAAGCA
*
69210095 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTACCACAAATATCTGT
*
69210123 TTCTGGTGGCTCTACCACAAATATCTAT
1 TTCTGGTGGCTCTACCACAAATATCTGT
* *
69210151 TTCTGGTGGCCCTACCACAATTATCTGT
1 TTCTGGTGGCTCTACCACAAATATCTGT
* * **
69210179 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTACCACAAATATCTGT
69210205 TTCTGG
1 TTCTGG
69210211 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
26 5 0.07
27 7 0.09
28 64 0.84
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTACCACAAATATCTGT
Found at i:69212746 original size:48 final size:48
Alignment explanation
Indices: 69212602--69212746 Score: 191
Period size: 48 Copynumber: 3.0 Consensus size: 48
69212592 ATATATACAC
* * * **
69212602 ATCTCATACATATTTCAGATTAACCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** * *
69212650 GGCTCATACATATTTCACATTAGCCTTTCGGCTTTACCACATAAATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
69212698 ATCTCAAACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
69212746 A
1 A
69212747 ACTTGTACAT
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:69218426 original size:43 final size:43
Alignment explanation
Indices: 69218320--69218433 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 43
69218310 CATATCCCGA
** * *
69218320 ATATGGTCTTACATGTTGTCACATATCAATGCCAATAATCCAG
1 ATATGGTCTTACATGTAATCACATAACGATGCCAATAATCCAG
* *** * * *
69218363 CTATGGTCTTACACAAAATCAAATAACGATGCCAAT-GTCCCAT
1 ATATGGTCTTACATGTAATCACATAACGATGCCAATAAT-CCAG
69218406 ATATGGTCTTACATGTAATCACATAACG
1 ATATGGTCTTACATGTAATCACATAACG
69218434 GGAATCCTAA
Statistics
Matches: 54, Mismatches: 16, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
42 1 0.02
43 53 0.98
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (43 bp):
ATATGGTCTTACATGTAATCACATAACGATGCCAATAATCCAG
Found at i:69221934 original size:27 final size:27
Alignment explanation
Indices: 69221805--69221991 Score: 172
Period size: 27 Copynumber: 7.0 Consensus size: 27
69221795 ACATACATCA
* * * *
69221805 CATAGGGGCAAAACAATCATCTTAGCAT
1 CATAAGGGCAAAACAGTCATTTTA-CCT
* *
69221833 -ATAAGGGCAAAACAGTCATTCTACCA
1 CATAAGGGCAAAACAGTCATTTTACCT
*
69221859 CATAAGGGCAAAACAATCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
*
69221886 CATAAGGGCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
69221913 CATAAGGG-AAAAGCAG-CTATTTTAACC-
1 CATAAGGGCAAAA-CAGTC-ATTTT-ACCT
*
69221940 CATGAGGGCAAAACTA-TCATTTTA-CT
1 CATAAGGGCAAAAC-AGTCATTTTACCT
* *
69221966 CCATAA-GGCAAAACTGTCAATTTACC
1 -CATAAGGGCAAAACAGTCATTTTACC
69221992 ATGTAGGGGC
Statistics
Matches: 132, Mismatches: 16, Indels: 23
0.77 0.09 0.13
Matches are distributed among these distances:
25 1 0.01
26 22 0.17
27 100 0.76
28 9 0.07
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.25
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCT
Found at i:69224735 original size:29 final size:29
Alignment explanation
Indices: 69224672--69224790 Score: 102
Period size: 29 Copynumber: 4.2 Consensus size: 29
69224662 TACATACATG
* *
69224672 CATATGGCCCA-CTAAGCCCAA-TCTTATT
1 CATATGGCCCATCT-GGCCCAATTCATATT
* * *
69224700 CAAATGGTCCATCTGGCCCAGTTCATATT
1 CATATGGCCCATCTGGCCCAATTCATATT
* * *
69224729 CTTATGGCCCA-CTAGGCCTAATTCACATT
1 CATATGGCCCATCT-GGCCCAATTCATATT
* *
69224758 CATATGGCCCATCAGGCCCAAATCATATT
1 CATATGGCCCATCTGGCCCAATTCATATT
69224787 -ATAT
1 CATAT
69224791 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
28 20 0.28
29 50 0.70
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CATATGGCCCATCTGGCCCAATTCATATT
Found at i:69224776 original size:58 final size:57
Alignment explanation
Indices: 69224674--69224786 Score: 136
Period size: 58 Copynumber: 2.0 Consensus size: 57
69224664 CATACATGCA
** * * **
69224674 TATGGCCCACTAAGCCCAATCTTATTCAAATGGTCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAAGCCCAATCACATTCAAATGGCCCATCAGGCCCAAATCATATTCT
* * *
69224731 TATGGCCCACTAGGCCTAATTCACATTCATATGGCCCATCAGGCCCAAATCATATT
1 TATGGCCCACTAAGCCCAA-TCACATTCAAATGGCCCATCAGGCCCAAATCATATT
69224787 ATATTCATGC
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
57 17 0.37
58 29 0.63
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (57 bp):
TATGGCCCACTAAGCCCAATCACATTCAAATGGCCCATCAGGCCCAAATCATATTCT
Found at i:69226253 original size:8 final size:8
Alignment explanation
Indices: 69226242--69226279 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
69226232 ACAAAAAAAG
69226242 TTTGGGAT
1 TTTGGGAT
69226250 TTTGGGATT
1 TTTGGGA-T
69226259 TTTGGG-T
1 TTTGGGAT
69226266 TTTGGGAT
1 TTTGGGAT
69226274 TTTGGG
1 TTTGGG
69226280 GCGTTACACT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.25
8 14 0.50
9 7 0.25
ACGTcount: A:0.08, C:0.00, G:0.39, T:0.53
Consensus pattern (8 bp):
TTTGGGAT
Found at i:69227359 original size:42 final size:41
Alignment explanation
Indices: 69227303--69227415 Score: 109
Period size: 41 Copynumber: 2.7 Consensus size: 41
69227293 ATGCCGATAG
* * *
69227303 CCCAGCTATAGTCTTACACGATATCTCGTATCAATACCATGT
1 CCCAGATATGGTCTTACACGAT-TCTCATATCAATACCATGT
* * *
69227345 CCCAGATATGGTCTTACACTATTCTCATATCGATGCCATGT
1 CCCAGATATGGTCTTACACGATTCTCATATCAATACCATGT
* * * * *
69227386 ACTAGACATGGCCTTACACGAAGTCTCATA
1 CCCAGATATGGTCTTACACG-ATTCTCATA
69227416 ATGATGCCAC
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
41 31 0.53
42 27 0.47
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (41 bp):
CCCAGATATGGTCTTACACGATTCTCATATCAATACCATGT
Found at i:69228071 original size:20 final size:20
Alignment explanation
Indices: 69228033--69228071 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
69228023 TGTTTCTCAA
*
69228033 ACCATAAACATGCATAATAT
1 ACCATAAACATGCAAAATAT
69228053 ACCATTAAACAT-CAAAATA
1 ACCA-TAAACATGCAAAATA
69228072 CACAAATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.54, C:0.21, G:0.03, T:0.23
Consensus pattern (20 bp):
ACCATAAACATGCAAAATAT
Found at i:69228854 original size:23 final size:23
Alignment explanation
Indices: 69228807--69228854 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
69228797 TGCATGAAGC
* *
69228807 AGAAGTAGTGAGAATTGAAATCT
1 AGAAGTAGAGAGAATTGAAAACT
69228830 AGAAGTAGAGA-AATTGAGAAACT
1 AGAAGTAGAGAGAATTGA-AAACT
69228853 AG
1 AG
69228855 GTAAGCTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.48, C:0.04, G:0.27, T:0.21
Consensus pattern (23 bp):
AGAAGTAGAGAGAATTGAAAACT
Found at i:69231826 original size:32 final size:32
Alignment explanation
Indices: 69231785--69231869 Score: 134
Period size: 32 Copynumber: 2.7 Consensus size: 32
69231775 TGAAATTGAA
* * *
69231785 ATGGGCTAGGCCCAACTGATATTGGTTCTGAT
1 ATGGGCTAGGCCCAACTGATATTGATTCTAAG
69231817 ATGGGCTAGGCCCAACTGATATTGATTCTAAG
1 ATGGGCTAGGCCCAACTGATATTGATTCTAAG
*
69231849 ATGGGCTAGGCCCAATTGATA
1 ATGGGCTAGGCCCAACTGATA
69231870 CTGTGATAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (32 bp):
ATGGGCTAGGCCCAACTGATATTGATTCTAAG
Found at i:69244886 original size:17 final size:17
Alignment explanation
Indices: 69244864--69244897 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
69244854 TTCCTAGCAG
69244864 GTTTTTATAGTGTATAA
1 GTTTTTATAGTGTATAA
69244881 GTTTTTATAGTGTATAA
1 GTTTTTATAGTGTATAA
69244898 CTAGAAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (17 bp):
GTTTTTATAGTGTATAA
Found at i:69248027 original size:13 final size:13
Alignment explanation
Indices: 69247995--69248020 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69247985 ACGAAGTAGA
69247995 ACACGACCGTGTG
1 ACACGACCGTGTG
69248008 ACACGACCGTGTG
1 ACACGACCGTGTG
69248021 CATCGACATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (13 bp):
ACACGACCGTGTG
Found at i:69248425 original size:24 final size:24
Alignment explanation
Indices: 69248393--69248440 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
69248383 CATTAGGATA
69248393 CATTCATCCTTTTTTTTTCTTTTT
1 CATTCATCCTTTTTTTTTCTTTTT
69248417 CATTCATCCTTTTTTTTTCTTTTT
1 CATTCATCCTTTTTTTTTCTTTTT
69248441 GTGTTTCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.71
Consensus pattern (24 bp):
CATTCATCCTTTTTTTTTCTTTTT
Found at i:69266819 original size:40 final size:41
Alignment explanation
Indices: 69266743--69266820 Score: 99
Period size: 40 Copynumber: 1.9 Consensus size: 41
69266733 TTACGTAGAT
*
69266743 TTTAATTATAAAATATATATATTAGTAATAAATTATATTAA
1 TTTAATTATAAAATATATATATTAGTAAGAAATTATATTAA
*
69266784 TTTAATT-TAAAATA-ATTATATTA-TAAGATATTTATAT
1 TTTAATTATAAAATATA-TATATTAGTAAGA-AATTATAT
69266821 GATAATTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
39 5 0.15
40 21 0.64
41 7 0.21
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (41 bp):
TTTAATTATAAAATATATATATTAGTAAGAAATTATATTAA
Found at i:69268174 original size:44 final size:44
Alignment explanation
Indices: 69268094--69268177 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
69268084 TGCTCAGGGA
* *
69268094 TACTTCGACCTTGAGTCAATGAGGCACTATAAGTGTTGTATTGT
1 TACTTCGACCTTGAGTCAATAAGGCACCATAAGTGTTGTATTGT
* **
69268138 TACTTCGA-CTTCGAGTCGATAAGGCACCATGTGTGTTGTA
1 TACTTCGACCTT-GAGTCAATAAGGCACCATAAGTGTTGTA
69268178 CTGCTACTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (44 bp):
TACTTCGACCTTGAGTCAATAAGGCACCATAAGTGTTGTATTGT
Found at i:69268374 original size:39 final size:40
Alignment explanation
Indices: 69268331--69268414 Score: 116
Period size: 39 Copynumber: 2.1 Consensus size: 40
69268321 ATAGGGGTAA
* * *
69268331 ATAAAGGTACTGAATGACTGATTGTTACTGGATGATATT-
1 ATAAAGGTACTGAATGACTGACTGCTACTGAATGATATTG
* *
69268370 ATAAAGGTTCTGAATGATTGACTGCTACTGAATGATATTG
1 ATAAAGGTACTGAATGACTGACTGCTACTGAATGATATTG
69268410 ATAAA
1 ATAAA
69268415 TTGATTGATA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 34 0.87
40 5 0.13
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (40 bp):
ATAAAGGTACTGAATGACTGACTGCTACTGAATGATATTG
Found at i:69268423 original size:18 final size:20
Alignment explanation
Indices: 69268402--69268447 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
69268392 TGCTACTGAA
* *
69268402 TGATATTG-ATAA-ATTGAT
1 TGATATTGAAAAATATTGAC
69268420 TGATATTGAAAAATATTGAC
1 TGATATTGAAAAATATTGAC
69268440 TGATATTG
1 TGATATTG
69268448 GGCTTGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 8 0.33
19 3 0.12
20 13 0.54
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.41
Consensus pattern (20 bp):
TGATATTGAAAAATATTGAC
Found at i:69269319 original size:21 final size:21
Alignment explanation
Indices: 69269276--69269332 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
69269266 CGGGCTCTCA
* * *
69269276 ACACAGCCATGTGAGCTAGCG
1 ACACGGCCGTGTGAGCTAACG
* *
69269297 ACATGGCCGTGTGATCTAACG
1 ACACGGCCGTGTGAGCTAACG
69269318 ACACGGCCGTGTGAG
1 ACACGGCCGTGTGAG
69269333 TCACACGGGC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.25, C:0.26, G:0.32, T:0.18
Consensus pattern (21 bp):
ACACGGCCGTGTGAGCTAACG
Found at i:69270965 original size:40 final size:40
Alignment explanation
Indices: 69270882--69271144 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
69270872 TTGAATGCTG
* * * * * *
69270882 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
69270922 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
69270962 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
69271002 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
69271042 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
69271082 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
69271121 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
69271145 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:69271164 original size:79 final size:80
Alignment explanation
Indices: 69270921--69271179 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
69270911 AAGTGAATAT
* * * * * * *
69270921 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
69270985 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
69271001 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
69271066 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
69271081 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
69271145 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
69271160 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
69271180 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:69279033 original size:39 final size:39
Alignment explanation
Indices: 69278829--69279051 Score: 223
Period size: 40 Copynumber: 5.6 Consensus size: 39
69278819 TTGAATGATG
* * * * * *
69278829 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
69278869 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
69278909 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
** **
69278949 TCCGGGTTAAGTCCCGAAGGCAGTCATGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
69278989 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
69279028 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
69279052 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 108 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:69279071 original size:79 final size:80
Alignment explanation
Indices: 69278904--69279086 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
69278894 GTGCGAGATA
* * *
69278904 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
**
69278969 CAGTCATGCGAGTTG
66 CAGTCATGCGAGGAG
* * * *
69278984 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
69279048 CA-T-TTGAACGAGGAG
66 CAGTCATG--CGAGGAG
* *
69279063 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
69279087 TACGTGATTT
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
77 2 0.02
78 15 0.17
79 43 0.49
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCATGCGAGGAG
Found at i:69285566 original size:20 final size:21
Alignment explanation
Indices: 69285528--69285566 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
69285518 TCGAGTTGGT
69285528 CACACGGGCATGTTGCCCTTC
1 CACACGGGCATGTTGCCCTTC
*
69285549 CACACGGGCGTG-TGCCCT
1 CACACGGGCATGTTGCCCT
69285567 ATTTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.38, G:0.28, T:0.21
Consensus pattern (21 bp):
CACACGGGCATGTTGCCCTTC
Found at i:69291320 original size:46 final size:46
Alignment explanation
Indices: 69291267--69291528 Score: 208
Period size: 47 Copynumber: 5.6 Consensus size: 46
69291257 ATTGGTGGGT
* * **
69291267 AGTGTAAGACATGCCTGGGACATGCATTGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCC
*** * *
69291313 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTTGAGACG-GAGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCACAAGATGAGAGCC
* * * * *
69291360 ACTGTAAGAAATGTTTGGGACATGCATCGGCCTCAAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATG-AGAGCC
* * ***
69291406 AGTGTAAGACATGTCTGGCACATGCATCGGCCACAAGATGATATTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCC
* ***
69291452 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGAT-ACGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAAGATGA-GAGCC
*
69291499 AGTGTAAGACCATGTCTGGGTCATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
69291529 AGCACCTTAC
Statistics
Matches: 174, Mismatches: 34, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
45 15 0.09
46 70 0.40
47 75 0.43
48 14 0.08
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCC
Found at i:69291472 original size:93 final size:92
Alignment explanation
Indices: 69291266--69291517 Score: 249
Period size: 93 Copynumber: 2.7 Consensus size: 92
69291256 TATTGGTGGG
* * * * *
69291266 TAGTGTAAGACATGCCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTG
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATACGA-AGCCAGTGTAAGACCATGTCTG
* ***
69291331 GGACATGACATCGGCCTTGAGACGGAGC
65 GCACATGACATCGGCCACAAGACGGAGC
* * * *
69291359 TACTGTAAGAAATGTTTGGGACATGCATCGGCCTCAAGACGTAAGCCAGTGTAAGA-CATGTCTG
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATACG-AAGCCAGTGTAAGACCATGTCTG
* * **
69291423 GCACATG-CATCGGCCACAAGATGATATT
65 GCACATGACATCGGCCACAAGACG-GAGC
* * *
69291451 TAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATACG-AGCCAGTGTAAGACCATGTC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCA-ATACGAAGCCAGTGTAAGACCATGTC
69291515 TGG
63 TGG
69291518 GTCATGGCAT
Statistics
Matches: 129, Mismatches: 24, Indels: 11
0.79 0.15 0.07
Matches are distributed among these distances:
91 12 0.09
92 24 0.19
93 70 0.54
94 19 0.15
95 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (92 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATACGAAGCCAGTGTAAGACCATGTCTGG
CACATGACATCGGCCACAAGACGGAGC
Found at i:69298503 original size:46 final size:47
Alignment explanation
Indices: 69298360--69298570 Score: 159
Period size: 47 Copynumber: 4.5 Consensus size: 47
69298350 ATTGTTGGCT
* * * * *
69298360 AGTGTAAGA-CATATCTGGGACATGCATCGGCCAC-ATTATG-AGAGCT
1 AGTGTAAGACCATGTCTAGGACATGCATCGGCCTCGA-GATGTA-AGCC
* *
69298406 AATGTAAGACCATGTCTAGGACATGCATCGGCCTTGAGATGTAAGCC
1 AGTGTAAGACCATGTCTAGGACATGCATCGGCCTCGAGATGTAAGCC
** * **
69298453 AGTGTACTA-CATGTCTAGGACATGCATTGG-CTACGAGATG-ATAGTT
1 AGTGTAAGACCATGTCTAGGACATGCATCGGCCT-CGAGATGTA-AGCC
* * * *
69298499 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATATGAA-CC
1 AGTGTAAGACCATGTCTAGGACAT-GCATCGGCCTCGAGATGT-AAGCC
*
69298546 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTAGGACATG
69298571 GTATCGGCAC
Statistics
Matches: 133, Mismatches: 22, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
45 3 0.02
46 44 0.33
47 76 0.57
48 9 0.07
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTAGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:69298538 original size:47 final size:47
Alignment explanation
Indices: 69298408--69298570 Score: 165
Period size: 47 Copynumber: 3.5 Consensus size: 47
69298398 TGAGAGCTAA
*
69298408 TGTAAGACCATGTCTAGGACATGCATCGGCCTTGAGATG-TAAGCCAG
1 TGTAAGACCATGTCTAGGACATGCATC-GACTTGAGATGATAAGCCAG
** * * * **
69298455 TGTACTA-CATGTCTAGGACATGCATTGGCTACGAGATGAT-AGTTAG
1 TGTAAGACCATGTCTAGGACATGCATCGACT-TGAGATGATAAGCCAG
*
69298501 TGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAT-ATGAA-CCAG
1 TGTAAGACCATGTCTAGGACAT-GCATCGACTTGAGATGAT-AAGCCAG
*
69298548 TGTAAGACCATGTCTGGGACATG
1 TGTAAGACCATGTCTAGGACATG
69298571 GTATCGGCAC
Statistics
Matches: 95, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
45 3 0.03
46 36 0.38
47 48 0.51
48 8 0.08
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTCTAGGACATGCATCGACTTGAGATGATAAGCCAG
Found at i:69304578 original size:20 final size:20
Alignment explanation
Indices: 69304555--69304598 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
69304545 TTCATTTTAA
69304555 TCATATTAAACTCATTT-CAG
1 TCATATTAAAC-CATTTCCAG
* *
69304575 TCATTTTATACCATTTCCAG
1 TCATATTAAACCATTTCCAG
69304595 TCAT
1 TCAT
69304599 TCCCTACAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.43
Consensus pattern (20 bp):
TCATATTAAACCATTTCCAG
Found at i:69305203 original size:23 final size:23
Alignment explanation
Indices: 69305175--69305221 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
69305165 ACTTAGTAAG
69305175 TAAATCAAGAGTTAAACTTACAT
1 TAAATCAAGAGTTAAACTTACAT
69305198 TAAATCAAGAGTTAAACTTACAT
1 TAAATCAAGAGTTAAACTTACAT
69305221 T
1 T
69305222 TGCCTCAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.32
Consensus pattern (23 bp):
TAAATCAAGAGTTAAACTTACAT
Found at i:69320630 original size:50 final size:49
Alignment explanation
Indices: 69320503--69320777 Score: 242
Period size: 50 Copynumber: 5.7 Consensus size: 49
69320493 TGATGCTAGG
* * * **
69320503 GATATATGAGAGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCTT
1 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCC
*** **
69320552 GAT--AT--GTTTCAGTGTAAGACCATGTCTGGGACATAACATCGGCACC
1 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CC
* **
69320598 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCTT
1 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCC
* * * *
69320647 GAT--AT--GTGTCAGTGTAAAACCATGTCTGGGACATGGCATCAGCACC
1 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CC
* * * *
69320693 AATAGATGAGGGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGCCTT
1 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-C
* * * *
69320743 GATATACGAGAGTCAGTGTAAGAACATGTCTGGGA
1 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGA
69320778 GTAATCGACT
Statistics
Matches: 177, Mismatches: 38, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
45 64 0.36
46 5 0.03
47 4 0.02
48 4 0.02
49 7 0.04
50 93 0.53
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCC
Found at i:69320671 original size:95 final size:95
Alignment explanation
Indices: 69320503--69320747 Score: 373
Period size: 95 Copynumber: 2.6 Consensus size: 95
69320493 TGATGCTAGG
* * * *
69320503 GATATATGAGAGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTTTCAGTGTA
1 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTCAGTGTA
* *
69320568 AGACCATGTCTGGGACATAACATCGGCACC
66 AAACCATGTCTGGGACATAACATCAGCACC
*
69320598 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCTTGATATGTGTCAGTGTA
1 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTCAGTGTA
**
69320663 AAACCATGTCTGGGACATGGCATCAGCACC
66 AAACCATGTCTGGGACATAACATCAGCACC
* * *
69320693 AATAGATGAGGGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGCCTTGATAT
1 GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGATAT
69320748 ACGAGAGTCA
Statistics
Matches: 136, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
95 128 0.94
96 8 0.06
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (95 bp):
GATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTCAGTGTA
AAACCATGTCTGGGACATAACATCAGCACC
Found at i:69335834 original size:36 final size:36
Alignment explanation
Indices: 69335759--69335834 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
69335749 CGTTGTCAGG
* * **
69335759 TGGACTGGCTCGTATGAGCATCTGGTGTGTATCGAT
1 TGGACTAGCTCGTATAAGCATCTGGTAAGTATCGAT
* * *
69335795 TGGACTAGCTCTTATAAGCATCTGGTAAGTTTCGGT
1 TGGACTAGCTCGTATAAGCATCTGGTAAGTATCGAT
69335831 TGGA
1 TGGA
69335835 ATATAGATGT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (36 bp):
TGGACTAGCTCGTATAAGCATCTGGTAAGTATCGAT
Found at i:69337335 original size:11 final size:12
Alignment explanation
Indices: 69337312--69337337 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69337302 TTATCGAACC
69337312 AAACATAAAAAA
1 AAACATAAAAAA
69337324 AAACATAAAAAA
1 AAACATAAAAAA
69337336 AA
1 AA
69337338 TTGATTTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (12 bp):
AAACATAAAAAA
Found at i:69342329 original size:21 final size:19
Alignment explanation
Indices: 69342300--69342339 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
69342290 GACAAAAAAA
69342300 AATGCTATTTTCTGTTGTTTT
1 AATGCTA-TTT-TGTTGTTTT
*
69342321 AATGTTATTTTGTTGTTTT
1 AATGCTATTTTGTTGTTTT
69342340 CTCCTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 3 0.17
21 6 0.33
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.65
Consensus pattern (19 bp):
AATGCTATTTTGTTGTTTT
Found at i:69343174 original size:22 final size:21
Alignment explanation
Indices: 69343157--69343204 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
69343147 AGAAAATAAC
69343157 AACAAAACAGTAAAAAAAAGAG
1 AACAAAACAGTAAAAAAAA-AG
* *
69343179 AAGAAAACATTAAAAAAAAAG
1 AACAAAACAGTAAAAAAAAAG
69343200 AACAA
1 AACAA
69343205 CAATTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.75, C:0.08, G:0.10, T:0.06
Consensus pattern (21 bp):
AACAAAACAGTAAAAAAAAAG
Found at i:69351281 original size:21 final size:22
Alignment explanation
Indices: 69351235--69351284 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
69351225 TCGAATTGGT
*
69351235 CACATGGGCGTGTTGCCCCTTC
1 CACACGGGCGTGTTGCCCCTTC
69351257 CACACGGGCGTGTTGCCCC-TC
1 CACACGGGCGTGTTGCCCCTTC
69351278 CACACGG
1 CACACGG
69351285 CCATGTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTTC
Found at i:69387509 original size:17 final size:17
Alignment explanation
Indices: 69387483--69387515 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
69387473 TGACCGTGTA
*
69387483 GTGAAGCAGTGAAGAAT
1 GTGAAACAGTGAAGAAT
69387500 GTGAAACAGTGAAGAA
1 GTGAAACAGTGAAGAA
69387516 AGAAAGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.33, T:0.15
Consensus pattern (17 bp):
GTGAAACAGTGAAGAAT
Found at i:69391442 original size:22 final size:21
Alignment explanation
Indices: 69391376--69391442 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 21
69391366 AAATATAATG
69391376 CAAAA-AAA-TAATTTACATA
1 CAAAATAAAGTAATTTACATA
69391395 -AAAATAAAGTAATTTACATAA
1 CAAAATAAAGTAATTTACAT-A
*
69391416 AAAAATAAAGTAATTTACAATA
1 CAAAATAAAGTAATTTAC-ATA
69391438 CAAAA
1 CAAAA
69391443 CCCCTTAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
18 4 0.10
19 3 0.07
20 10 0.24
21 1 0.02
22 22 0.52
23 2 0.05
ACGTcount: A:0.64, C:0.07, G:0.03, T:0.25
Consensus pattern (21 bp):
CAAAATAAAGTAATTTACATA
Found at i:69391636 original size:33 final size:33
Alignment explanation
Indices: 69391594--69391659 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
69391584 ATGAACTCGA
* **
69391594 GCCGGGGGGAGTAGAGAACGGCGTTGGATATGG
1 GCCGGGGGGAGAAGAGAACGGCGACGGATATGG
*
69391627 GCCGGGGGGAGAAGAGAATGGCGACGGATATGG
1 GCCGGGGGGAGAAGAGAACGGCGACGGATATGG
69391660 CTCTGGAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (33 bp):
GCCGGGGGGAGAAGAGAACGGCGACGGATATGG
Found at i:69394184 original size:26 final size:28
Alignment explanation
Indices: 69394140--69394227 Score: 80
Period size: 27 Copynumber: 3.3 Consensus size: 28
69394130 TATAATCTTA
*
69394140 AATTACTAA-TA-AATTAATTTTAAAAT
1 AATTACTAACTACAAATAATTTTAAAAT
*
69394166 AATTACTAAC-ACAAA-AATTTATCAAAT
1 AATTACTAACTACAAATAATTT-TAAAAT
*
69394193 AATT-CTAAACTACAAATAATTATAAAA-
1 AATTACT-AACTACAAATAATTTTAAAAT
*
69394220 ATTTACTA
1 AATTACTA
69394228 TCCTTCTTCT
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
26 17 0.34
27 18 0.36
28 11 0.22
29 4 0.08
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (28 bp):
AATTACTAACTACAAATAATTTTAAAAT
Found at i:69394238 original size:3 final size:3
Alignment explanation
Indices: 69394230--69394259 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
69394220 ATTTACTATC
69394230 CTT CTT CTT CTT CTTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT C-TT CTT CTT CTT CTT CT
69394260 CTTTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:69394249 original size:13 final size:13
Alignment explanation
Indices: 69394231--69394262 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
69394221 TTTACTATCC
69394231 TTCTTCTTCTTCT
1 TTCTTCTTCTTCT
69394244 TTCTTCTTCTTCT
1 TTCTTCTTCTTCT
69394257 TCTCTT
1 T-TCTT
69394263 TTTTTTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (13 bp):
TTCTTCTTCTTCT
Found at i:69394502 original size:3 final size:3
Alignment explanation
Indices: 69394490--69394519 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
69394480 TTTTTAAAAT
*
69394490 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
69394520 TATTAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:69394833 original size:33 final size:35
Alignment explanation
Indices: 69394784--69394848 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 35
69394774 ATTAACCTTG
*
69394784 CAAAATTGGCCGGTCGATT-CTTTTTCTTCATAAC
1 CAAAATTGGCAGGTCGATTACTTTTTCTTCATAAC
*
69394818 CAAAA-TGGCAGGTCGATTATTTTTTCTTCAT
1 CAAAATTGGCAGGTCGATTACTTTTTCTTCAT
69394849 TAAGAACTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 12 0.43
34 16 0.57
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (35 bp):
CAAAATTGGCAGGTCGATTACTTTTTCTTCATAAC
Found at i:69398175 original size:46 final size:45
Alignment explanation
Indices: 69398114--69398282 Score: 155
Period size: 46 Copynumber: 3.6 Consensus size: 45
69398104 AACTCTTAGT
* *
69398114 CGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGC
1 CGATACATGTCCCAAACATGTCTTACACTGGCTT-CGTCTCAAGGC
* * *
69398160 CGATACATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATACATGTCCCAAACATGTCTTACACTGGC-TTCGTCTCAAGGC
* *
69398206 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TC-TCAT-AATGTGGC
1 CGAT-ACATGTCCCAAACAT-GTCTTACACTGGCTTCGTC-TCAA---GGC
* * *
69398254 CGATGCATGTCCCAGACGTGTCTTACACT
1 CGATACATGTCCCAAACATGTCTTACACT
69398283 AGCTCACATA
Statistics
Matches: 105, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
45 4 0.04
46 56 0.53
47 27 0.26
48 18 0.17
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (45 bp):
CGATACATGTCCCAAACATGTCTTACACTGGCTTCGTCTCAAGGC
Found at i:69398231 original size:94 final size:92
Alignment explanation
Indices: 69398114--69398285 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 92
69398104 AACTCTTAGT
* *
69398114 CGATGCATGTCCCAAACATGTCTTACACTGGCT-TACGT-CTCGAGGCCGATACATGTCCCAAAC
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGATACATGTCCCAAAC
69398177 ATGTCTTACACTAGCACTCGTCTCAATGC
64 ATGTCTTACACTAGCACTCGTCTCAATGC
* * * *
69398206 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATAATGAGGCCGATACATGTCCCAAAC
*
69398271 GTGTCTTACACTAGC
64 ATGTCTTACACTAGC
69398286 TCACATAAGT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 5 0.07
93 13 0.19
94 49 0.71
95 2 0.03
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (92 bp):
CGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATGAGGCCGATACATGTCCCAAACAT
GTCTTACACTAGCACTCGTCTCAATGC
Found at i:69401813 original size:39 final size:39
Alignment explanation
Indices: 69401769--69401848 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 39
69401759 CAATTCAATC
* *
69401769 TACTCATCTTGAGCATATTAATCAATAGAAGGGAGGCTT
1 TACTCATCTTGAGCATATTAATCAATAAAAAGGAGGCTT
* *
69401808 TACTCATCTTGAGCATCTTAATCGATAAAAAGGAGGCTT
1 TACTCATCTTGAGCATATTAATCAATAAAAAGGAGGCTT
69401847 TA
1 TA
69401849 TTTGATAGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (39 bp):
TACTCATCTTGAGCATATTAATCAATAAAAAGGAGGCTT
Found at i:69402204 original size:21 final size:20
Alignment explanation
Indices: 69402162--69402207 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
69402152 AGGGATAAAA
*
69402162 AAATATAGATAATATGAGAT
1 AAATATAGATAATACGAGAT
69402182 AAATATAGA-AATACGATAGAT
1 AAATATAGATAATACG--AGAT
69402203 AAATA
1 AAATA
69402208 CAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 5 0.22
20 9 0.39
21 9 0.39
ACGTcount: A:0.59, C:0.02, G:0.13, T:0.26
Consensus pattern (20 bp):
AAATATAGATAATACGAGAT
Found at i:69402551 original size:12 final size:12
Alignment explanation
Indices: 69402536--69402571 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
69402526 TGACTGTTTG
69402536 TTTGAACAACTA
1 TTTGAACAACTA
69402548 TTTGAACAACTA
1 TTTGAACAACTA
69402560 TTTGAAC-ACTA
1 TTTGAACAACTA
69402571 T
1 T
69402572 ATTCAAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.21
12 19 0.79
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (12 bp):
TTTGAACAACTA
Found at i:69405685 original size:79 final size:82
Alignment explanation
Indices: 69405574--69405758 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
69405564 GCTACTCGTT
* * *
69405574 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
69405637 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
69405654 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
69405717 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
69405734 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69405759 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:69405758 original size:40 final size:40
Alignment explanation
Indices: 69405555--69405758 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
69405545 CGGAATTTAA
** *
69405555 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69405595 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69405635 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69405674 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
69405714 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69405754 CCGGA
1 CCGGA
69405759 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69408775 original size:25 final size:26
Alignment explanation
Indices: 69408747--69408795 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
69408737 CAACAAAAAT
69408747 AAAATCT-ATTCTAAAAA-GAAAAGGG
1 AAAATCTAATT-TAAAAATGAAAAGGG
69408772 AAAATCTAATTTAAAAATGAAAAG
1 AAAATCTAATTTAAAAATGAAAAG
69408796 AAAAAAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.22
Consensus pattern (26 bp):
AAAATCTAATTTAAAAATGAAAAGGG
Found at i:69408801 original size:26 final size:25
Alignment explanation
Indices: 69408747--69408801 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
69408737 CAACAAAAAT
**
69408747 AAAATCTATTCTAAAAAGAAAAGGG
1 AAAATCTATTCTAAAAAGAAAAGAA
69408772 AAAATCTAATT-TAAAAATGAAAAGAA
1 AAAATCT-ATTCTAAAAA-GAAAAGAA
69408798 AAAA
1 AAAA
69408802 GAAAAAATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.64, C:0.05, G:0.11, T:0.20
Consensus pattern (25 bp):
AAAATCTATTCTAAAAAGAAAAGAA
Found at i:69427202 original size:21 final size:21
Alignment explanation
Indices: 69427147--69427285 Score: 82
Period size: 21 Copynumber: 6.5 Consensus size: 21
69427137 CCGAAGGCTG
* * * *
69427147 AACAGAAGCACACAAGTGCTA
1 AACAGAAGCTCATAAGAGTTA
* * *
69427168 AACAGAAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGTTA
*
69427189 AACAGAAGCTCATAAAAGAGCTA
1 AACAGAAGCTCAT--AAGAGTTA
* * *
69427212 AAC-GAAAACCCATAAGGGTTA
1 AACAG-AAGCTCATAAGAGTTA
* *
69427233 AACAGAAGCTCAAAAGAGTTG
1 AACAGAAGCTCATAAGAGTTA
** * *
69427254 AATGGAAACTCATATGAGTTA
1 AACAGAAGCTCATAAGAGTTA
*
69427275 AACAAAAGCTC
1 AACAGAAGCTC
69427286 GTGAGAGCTA
Statistics
Matches: 86, Mismatches: 28, Indels: 8
0.70 0.23 0.07
Matches are distributed among these distances:
21 69 0.80
22 2 0.02
23 15 0.17
ACGTcount: A:0.48, C:0.18, G:0.19, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGTTA
Found at i:69427275 original size:42 final size:43
Alignment explanation
Indices: 69427147--69427285 Score: 131
Period size: 42 Copynumber: 3.3 Consensus size: 43
69427137 CCGAAGGCTG
* * * *
69427147 AACAGAAGCAC-ACAAGTGCTAAAC-AGAAACCCATAAGGGTTA
1 AACAGAAGCTCAAAAAGAGCTAAACGA-AAACCCATAAGAGTTA
*
69427189 AACAGAAGCTCATAAAAGAGCTAAACGAAAACCCATAAGGGTTA
1 AACAGAAGCTCA-AAAAGAGCTAAACGAAAACCCATAAGAGTTA
* * * * * *
69427233 AACAGAAGCTC-AAAAGAGTTGAATGGAAACTCATATGAGTTA
1 AACAGAAGCTCAAAAAGAGCTAAACGAAAACCCATAAGAGTTA
*
69427275 AACAAAAGCTC
1 AACAGAAGCTC
69427286 GTGAGAGCTA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
42 44 0.53
44 38 0.46
45 1 0.01
ACGTcount: A:0.48, C:0.18, G:0.19, T:0.15
Consensus pattern (43 bp):
AACAGAAGCTCAAAAAGAGCTAAACGAAAACCCATAAGAGTTA
Found at i:69432045 original size:47 final size:47
Alignment explanation
Indices: 69431925--69432101 Score: 176
Period size: 48 Copynumber: 3.9 Consensus size: 47
69431915 TACCATGGTT
* * *
69431925 ATACGTGTAACGTGGTGCTAATTAGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACG-TTACACATATTG
* * *
69431973 ATACATGTAACGTAGTGCTAAGTGGATATGCCACAGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCAC-GTTACACATATTG
* *
69432021 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGT-----TA---
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGTTACACATATTG
*
69432059 A-ACATGTAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCAC-GTTACACAT
69432102 GTAATGTGGT
Statistics
Matches: 109, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
37 3 0.03
38 28 0.26
39 2 0.02
41 2 0.02
44 1 0.01
46 2 0.02
47 25 0.23
48 45 0.41
49 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (47 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGTTACACATATTG
Found at i:69432141 original size:38 final size:38
Alignment explanation
Indices: 69432027--69432124 Score: 187
Period size: 38 Copynumber: 2.6 Consensus size: 38
69432017 ATTGATTCAT
69432027 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
69432065 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
*
69432103 TAATGTGGTGCTAAGTGGATAT
1 TAACGTGGTGCTAAGTGGATAT
69432125 GCCATGATTA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:69435559 original size:31 final size:31
Alignment explanation
Indices: 69435524--69435583 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
69435514 ACCATCGTTT
* *
69435524 TTGGGAAATCTATGGTGGTAAGCCATCATCG
1 TTGGGAAATCCAAGGTGGTAAGCCATCATCG
* * *
69435555 TTGGGCAATCCAAGGTGGTAGGTCATCAT
1 TTGGGAAATCCAAGGTGGTAAGCCATCAT
69435584 TGCTAGGCAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (31 bp):
TTGGGAAATCCAAGGTGGTAAGCCATCATCG
Found at i:69437156 original size:26 final size:26
Alignment explanation
Indices: 69437107--69437156 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
69437097 GATCAGGACC
* *
69437107 ATTTCACAGCTCGTGTAAGAAAACCT
1 ATTTCACAGCTCATGCAAGAAAACCT
*
69437133 ATTTCACAGCTCATGCAAGCAAAC
1 ATTTCACAGCTCATGCAAGAAAAC
69437157 TATGTATATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (26 bp):
ATTTCACAGCTCATGCAAGAAAACCT
Found at i:69448716 original size:12 final size:12
Alignment explanation
Indices: 69448699--69448723 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69448689 TATTATACTA
69448699 ACTTGAATGTTG
1 ACTTGAATGTTG
69448711 ACTTGAATGTTG
1 ACTTGAATGTTG
69448723 A
1 A
69448724 GTTTGTGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (12 bp):
ACTTGAATGTTG
Found at i:69459897 original size:13 final size:13
Alignment explanation
Indices: 69459875--69459907 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
69459865 AATGGTTTGT
69459875 TTAT-TAAACTAA
1 TTATCTAAACTAA
69459887 TTATCTAAACTAA
1 TTATCTAAACTAA
*
69459900 TTAACTAA
1 TTATCTAA
69459908 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:69462826 original size:6 final size:6
Alignment explanation
Indices: 69462807--69462853 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
69462797 CTTTATAACG
* * *
69462807 AAAAAT AAACAT AAAAAT AAAAAT AGAAAT AGAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
69462854 ATAAGAGGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:69468261 original size:13 final size:13
Alignment explanation
Indices: 69468239--69468271 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
69468229 AAGGGTTTGT
69468239 TTAT-TAAACTAA
1 TTATCTAAACTAA
69468251 TTATCTAAACTAA
1 TTATCTAAACTAA
*
69468264 TTAACTAA
1 TTATCTAA
69468272 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:69472855 original size:48 final size:48
Alignment explanation
Indices: 69472784--69472963 Score: 219
Period size: 48 Copynumber: 3.9 Consensus size: 48
69472774 CCATGGTCAT
69472784 ATATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCG
1 ATATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCG
* * * *
69472832 ATATGTGATCCCATGTAAGACCATGTCTGGGAGATGGCATTGGCTTCA
1 ATATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCG
*
69472880 ATATGTGATCCCATATAAGACCATATCTGGGATAT-G-A----CATCG
1 ATATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCG
* ** * * *
69472922 ACATGTGATTTCGTGTAAGACAATATCTGGGATATGGTATTG
1 ATATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTG
69472964 ATATGAGACT
Statistics
Matches: 112, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
42 32 0.29
43 1 0.01
44 1 0.01
46 1 0.01
47 1 0.01
48 76 0.68
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (48 bp):
ATATGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCG
Found at i:69472941 original size:42 final size:42
Alignment explanation
Indices: 69472895--69472988 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
69472885 TGATCCCATA
* *
69472895 TAAGACCATATCTGGGATATGACATCGACATGTGATTTCGTG
1 TAAGACCATATCTGGGATATGACATCGACATGAGACTTCGTG
* ** * *
69472937 TAAGACAATATCTGGGATATGGTATTGATATGAGACTTCGTG
1 TAAGACCATATCTGGGATATGACATCGACATGAGACTTCGTG
69472979 TAAGACCATA
1 TAAGACCATA
69472989 GTTAGGCTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGACATCGACATGAGACTTCGTG
Found at i:69479222 original size:18 final size:18
Alignment explanation
Indices: 69479199--69479235 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
69479189 AAACAATTAG
69479199 GCTTTGAAGCACTTTCTT
1 GCTTTGAAGCACTTTCTT
69479217 GCTTTGAAGCACTTTCTT
1 GCTTTGAAGCACTTTCTT
69479235 G
1 G
69479236 GCAAAGACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (18 bp):
GCTTTGAAGCACTTTCTT
Found at i:69480202 original size:27 final size:28
Alignment explanation
Indices: 69480158--69480211 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
69480148 AAAATACCAA
69480158 CTTTTAAGGACCCAAAAAATTTTTTTAG
1 CTTTTAAGGACCCAAAAAATTTTTTTAG
* *
69480186 CTTTTAAGGGCTC-AAAAATTTTTTTA
1 CTTTTAAGGACCCAAAAAATTTTTTTA
69480212 CCAACTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (28 bp):
CTTTTAAGGACCCAAAAAATTTTTTTAG
Found at i:69480220 original size:29 final size:30
Alignment explanation
Indices: 69480152--69480235 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 30
69480142 AAAAAAAAAA
69480152 TACCAACTTTTAAGGACCCAAAAAATTTTTT
1 TACCAAC-TTTAAGGACCCAAAAAATTTTTT
* * * *
69480183 TAGC--TTTTAAGGGCTC-AAAAATTTTTT
1 TACCAACTTTAAGGACCCAAAAAATTTTTT
*
69480210 TACCAACTTTAATGGGACCTAAAAAA
1 TACCAACTTTAA--GGACCCAAAAAA
69480236 AATTTTATTC
Statistics
Matches: 39, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
27 14 0.36
28 9 0.23
29 5 0.13
31 6 0.15
32 5 0.13
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.35
Consensus pattern (30 bp):
TACCAACTTTAAGGACCCAAAAAATTTTTT
Found at i:69483281 original size:12 final size:12
Alignment explanation
Indices: 69483260--69483290 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
69483250 CTGTAAACTC
69483260 AAAAAAAAAAAG
1 AAAAAAAAAAAG
*
69483272 AAAAAGAAAAAG
1 AAAAAAAAAAAG
69483284 AAAAAAA
1 AAAAAAA
69483291 GGTTACCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:69484322 original size:17 final size:18
Alignment explanation
Indices: 69484302--69484342 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
69484292 AGTTTTGCAA
69484302 ATTCAATACCTA-AA-TTT
1 ATTCAATA-CTAGAATTTT
69484319 ATTCAATACTAGAATTTT
1 ATTCAATACTAGAATTTT
69484337 ATTCAA
1 ATTCAA
69484343 ATTTTATGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.14
17 10 0.45
18 9 0.41
ACGTcount: A:0.41, C:0.15, G:0.02, T:0.41
Consensus pattern (18 bp):
ATTCAATACTAGAATTTT
Found at i:69487420 original size:41 final size:40
Alignment explanation
Indices: 69487333--69487421 Score: 108
Period size: 41 Copynumber: 2.2 Consensus size: 40
69487323 ATTATCAAAC
* * *
69487333 ATAGAGCAATAGTGGCGTTTTGGGTAAAACGCCGCTAAAA
1 ATAGAGCAAAAGTGACGTTTTGAGTAAAACGCCGCTAAAA
* *
69487373 AAAGAGCAAAAGTGACGTTTT-AGTAAAAAATGCCGCTAAAA
1 ATAGAGCAAAAGTGACGTTTTGAGT--AAAACGCCGCTAAAA
69487414 ATAGAGCA
1 ATAGAGCA
69487422 TTAGCGGCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.05
40 18 0.44
41 21 0.51
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (40 bp):
ATAGAGCAAAAGTGACGTTTTGAGTAAAACGCCGCTAAAA
Found at i:69487475 original size:41 final size:41
Alignment explanation
Indices: 69487399--69487657 Score: 328
Period size: 41 Copynumber: 6.4 Consensus size: 41
69487389 GTTTTAGTAA
* * *
69487399 AAAATGCCGCTAAAAA-TAGAGCATTAGCGGCGCTTCTGGT
1 AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTCTGGT
* * *
69487439 AAAACGTCGCTAAAAACCAAAGAATTAGCGGTGCTTCTGGT
1 AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTCTGGT
* * *
69487480 AAAACGTCGCTAAAAACCAGAGCATTAGCAGCGCTTCTGGT
1 AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTCTGGT
* *
69487521 AAAACGCCACTAAAAA-TAAGAGCATTAGCGGCGCTTCTGGT
1 AAAACGCCGCTAAAAACCAA-AGCATTAGCGGCGCTTCTGGT
* * *
69487562 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTTTTGGT
1 AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTCTGGT
* *
69487603 AAAACGCCGCT-AAAA-CAAGAGCATTAGCAGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAA-AGCATTAGCGGCGCTTCTGGT
69487643 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
69487658 GTCATATAAC
Statistics
Matches: 191, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
39 2 0.01
40 49 0.26
41 139 0.73
42 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTCTGGT
Found at i:69487525 original size:82 final size:82
Alignment explanation
Indices: 69487355--69487657 Score: 373
Period size: 82 Copynumber: 3.7 Consensus size: 82
69487345 TGGCGTTTTG
** * * * * * *
69487355 GGTAAAACGCCGCTAAAAA-AAGAGCAAAAGTGACG-TTTTAGTAAAAAATGCCGCTAAAAA-TA
1 GGTAAAACGCCGCTAAAAACAAGAGCATTAGCGGCGCTTCTGGT--AAAACGCCGCTAAAAACCA
69487417 GAGCATTAGCGGCGCTTCT
64 GAGCATTAGCGGCGCTTCT
* * * *
69487436 GGTAAAACGTCGCTAAAAACCAA-AGAATTAGCGGTGCTTCTGGTAAAACGTCGCTAAAAACCAG
1 GGTAAAACGCCGCTAAAAA-CAAGAGCATTAGCGGCGCTTCTGGTAAAACGCCGCTAAAAACCAG
*
69487500 AGCATTAGCAGCGCTTCT
65 AGCATTAGCGGCGCTTCT
* *
69487518 GGTAAAACGCCACTAAAAATAAGAGCATTAGCGGCGCTTCTGGTAAAACGCCGCTAAAAACCAGA
1 GGTAAAACGCCGCTAAAAACAAGAGCATTAGCGGCGCTTCTGGTAAAACGCCGCTAAAAACCAGA
* *
69487583 GCATTAGCGGCACTTTT
66 GCATTAGCGGCGCTTCT
* *
69487600 GGTAAAACGCCGCT-AAAACAAGAGCATTAGCAGCGCTTTTGGTAAAACGCCGCTAAAA
1 GGTAAAACGCCGCTAAAAACAAGAGCATTAGCGGCGCTTCTGGTAAAACGCCGCTAAAA
69487658 GTCATATAAC
Statistics
Matches: 191, Mismatches: 26, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
81 75 0.39
82 109 0.57
83 7 0.04
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (82 bp):
GGTAAAACGCCGCTAAAAACAAGAGCATTAGCGGCGCTTCTGGTAAAACGCCGCTAAAAACCAGA
GCATTAGCGGCGCTTCT
Found at i:69487559 original size:123 final size:121
Alignment explanation
Indices: 69487399--69487657 Score: 401
Period size: 123 Copynumber: 2.1 Consensus size: 121
69487389 GTTTTAGTAA
* *
69487399 AAAATGCCGCTAAAAATAGAGCATTAGCGGCGCTTCTGGTAAAACGTCGCTAAAAACCAAAGAAT
1 AAAACGCCGCTAAAAATAGAGCATTAGCGGCGCTTCTGGTAAAACGCCGCTAAAAACCAAAGAAT
** * *
69487464 TAGCGGTGCTTCTGGTAAAACGTCGCTAAAAACCAGAGCATTAGCAGCGCTTCTGGT
66 TAGCGGCACTTCTGGTAAAACGCCGCT-AAAACAAGAGCATTAGCAGCGCTTCTGGT
* * *
69487521 AAAACGCCACTAAAAATAAGAGCATTAGCGGCGCTTCTGGTAAAACGCCGCTAAAAACCAGAGCA
1 AAAACGCCGCTAAAAAT-AGAGCATTAGCGGCGCTTCTGGTAAAACGCCGCTAAAAACCAAAGAA
* *
69487586 TTAGCGGCACTTTTGGTAAAACGCCGCTAAAACAAGAGCATTAGCAGCGCTTTTGGT
65 TTAGCGGCACTTCTGGTAAAACGCCGCTAAAACAAGAGCATTAGCAGCGCTTCTGGT
69487643 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
69487658 GTCATATAAC
Statistics
Matches: 124, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
122 56 0.45
123 68 0.55
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (121 bp):
AAAACGCCGCTAAAAATAGAGCATTAGCGGCGCTTCTGGTAAAACGCCGCTAAAAACCAAAGAAT
TAGCGGCACTTCTGGTAAAACGCCGCTAAAACAAGAGCATTAGCAGCGCTTCTGGT
Found at i:69487836 original size:14 final size:14
Alignment explanation
Indices: 69487814--69487911 Score: 61
Period size: 14 Copynumber: 6.7 Consensus size: 14
69487804 TTAATTGTCA
*
69487814 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
69487828 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
69487842 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
* *
69487856 TTAAGGTTTATGAGT
1 TTATGGTTTAAG-GT
*
69487871 TAACTATGGTTTAAGAT
1 T---TATGGTTTAAGGT
* * *
69487888 ATATAGTTTAGGGT
1 TTATGGTTTAAGGT
*
69487902 TTAAGGTTTA
1 TTATGGTTTA
69487912 TGAGTTAACT
Statistics
Matches: 62, Mismatches: 18, Indels: 8
0.70 0.20 0.09
Matches are distributed among these distances:
14 49 0.79
15 3 0.05
17 1 0.02
18 9 0.15
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:69487851 original size:21 final size:21
Alignment explanation
Indices: 69487825--69487906 Score: 83
Period size: 21 Copynumber: 3.7 Consensus size: 21
69487815 TATAGTTTAA
*
69487825 GGTTTATGGTTTAAGATATAT
1 GGTTTAGGGTTTAAGATATAT
* *
69487846 GGTTTAGGGTTTAAGGTTTAT
1 GGTTTAGGGTTTAAGATATAT
*
69487867 GAGTTAACTATGGTTTAAGATATAT
1 G-GTT---TAGGGTTTAAGATATAT
*
69487892 AGTTTAGGGTTTAAG
1 GGTTTAGGGTTTAAG
69487907 GTTTATGAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
21 29 0.59
22 3 0.06
24 3 0.06
25 14 0.29
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (21 bp):
GGTTTAGGGTTTAAGATATAT
Found at i:69487879 original size:46 final size:46
Alignment explanation
Indices: 69487829--69487922 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
69487819 GTTTAAGGTT
*
69487829 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTATGAGTTAAC
69487875 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTATGAGTTAAC
69487921 TA
1 TA
69487923 GTATTTGAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (46 bp):
TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTATGAGTTAAC
Found at i:69487984 original size:14 final size:14
Alignment explanation
Indices: 69487967--69488077 Score: 50
Period size: 14 Copynumber: 7.8 Consensus size: 14
69487957 GGATTATGAT
69487967 TTAGGGTTTAAGGG
1 TTAGGGTTTAAGGG
** *
69487981 TTAGGGTTGGA-GT
1 TTAGGGTTTAAGGG
* *
69487994 TTAAGGTGTAAGGG
1 TTAGGGTTTAAGGG
* *
69488008 TTTGGGGTTAAGGG
1 TTAGGGTTTAAGGG
*
69488022 TTAAAGGTTT-AGGG
1 TT-AGGGTTTAAGGG
* *
69488036 TTTAGTGTTTATAAGG
1 -TTAGGGTTTA-AGGG
69488052 -TACGGG-TTAAGAGG
1 TTA-GGGTTTAAG-GG
69488066 TTTAGGGTTTAA
1 -TTAGGGTTTAA
69488078 ATTAATTAGT
Statistics
Matches: 67, Mismatches: 20, Indels: 18
0.64 0.19 0.17
Matches are distributed among these distances:
13 9 0.13
14 38 0.57
15 11 0.16
16 9 0.13
ACGTcount: A:0.23, C:0.01, G:0.39, T:0.37
Consensus pattern (14 bp):
TTAGGGTTTAAGGG
Found at i:69488038 original size:7 final size:7
Alignment explanation
Indices: 69487949--69488046 Score: 58
Period size: 7 Copynumber: 14.0 Consensus size: 7
69487939 GATGAATTAT
69487949 GGGTTTA
1 GGGTTTA
*
69487956 GGGATTA
1 GGGTTTA
* *
69487963 TGATTTA
1 GGGTTTA
69487970 GGGTTTAA
1 GGGTTT-A
69487978 GGG-TTA
1 GGGTTTA
69487984 GGG-TT-
1 GGGTTTA
69487989 GGAGTTTA
1 GG-GTTTA
* *
69487997 AGGTGTAA
1 GGGT-TTA
*
69488005 GGGTTTG
1 GGGTTTA
*
69488012 GGGTTAA
1 GGGTTTA
*
69488019 GGGTTAA
1 GGGTTTA
*
69488026 AGGTTTA
1 GGGTTTA
69488033 GGGTTTA
1 GGGTTTA
*
69488040 GTGTTTA
1 GGGTTTA
69488047 TAAGGTACGG
Statistics
Matches: 69, Mismatches: 17, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
5 2 0.03
6 7 0.10
7 50 0.72
8 10 0.14
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.39
Consensus pattern (7 bp):
GGGTTTA
Found at i:69490087 original size:58 final size:58
Alignment explanation
Indices: 69489997--69490112 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
69489987 ATTTTTCCTC
69489997 ATTGTCAGTGGGATGGTTTAAATAACATTTAAGGTCTAACTTTATGTTACTGGGACTA
1 ATTGTCAGTGGGATGGTTTAAATAACATTTAAGGTCTAACTTTATGTTACTGGGACTA
69490055 ATTGTCAGTGGGATGGTTTAAATAACATTTAAGGTCTAACTTTATGTTACTGGGACTA
1 ATTGTCAGTGGGATGGTTTAAATAACATTTAAGGTCTAACTTTATGTTACTGGGACTA
69490113 TGCAATGATA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.38
Consensus pattern (58 bp):
ATTGTCAGTGGGATGGTTTAAATAACATTTAAGGTCTAACTTTATGTTACTGGGACTA
Found at i:69493069 original size:43 final size:43
Alignment explanation
Indices: 69492978--69493126 Score: 217
Period size: 43 Copynumber: 3.4 Consensus size: 43
69492968 TTTTGAATTT
* *
69492978 ATGACATTTAGCGGCGTTTGTGGGAAAAAACGCCGCTAAAAGTC
1 ATGACCTTTAGCGGCGTTTGT-GGAAAAAGCGCCGCTAAAAGTC
* * *
69493022 ATGACCTTTAGCGGCATTTGTGGTAAAAGCGCCGCTAAATGTC
1 ATGACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAAGTC
*
69493065 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTC
1 ATGACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAAGTC
**
69493108 ATGATTTTTAGCGGCGTTT
1 ATGACCTTTAGCGGCGTTT
69493127 TTTCAAATAA
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
43 76 0.80
44 19 0.20
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
ATGACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAAGTC
Found at i:69497183 original size:55 final size:53
Alignment explanation
Indices: 69497062--69497275 Score: 209
Period size: 55 Copynumber: 4.0 Consensus size: 53
69497052 ATAAGGATAT
* * **
69497062 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGCCAAGAAAAT-
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAG-GAA-AAGGTC
** *
69497116 CATGTAAGACCATGTTAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGAAAAGGT-C
* * * *
69497171 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG-CAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAAGG-T-C
* * * * *
69497224 CACGTAAGACCATGTCAAGACATGGCAATGATAAGTTCAAAAAGGAAAAGGT
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAAGGT
69497276 TCCCGAGTAA
Statistics
Matches: 133, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
52 4 0.03
53 43 0.32
54 42 0.32
55 44 0.33
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAAGGTC
Found at i:69513001 original size:9 final size:9
Alignment explanation
Indices: 69512987--69513013 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
69512977 ATGGTTAGGG
69512987 TTTCCAAGC
1 TTTCCAAGC
69512996 TTTCCAAGC
1 TTTCCAAGC
69513005 TTTCCAAGC
1 TTTCCAAGC
69513014 GAAATATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.33, G:0.11, T:0.33
Consensus pattern (9 bp):
TTTCCAAGC
Found at i:69513494 original size:54 final size:54
Alignment explanation
Indices: 69513430--69513706 Score: 279
Period size: 54 Copynumber: 5.0 Consensus size: 54
69513420 TTGGTAAGAT
* *
69513430 AAGGATATCATGTAAGACCATGCCAAGGCATAGCATTGATAAGTTCTATAAGGA
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
* * **
69513484 AAGGAAATCATGTAAGACAAGACCATGCCAAGTCATGGCATTGATAAGTTCTATAAGTC
1 AAGGATATCATGT-----AAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
* *
69513543 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGA
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGA
** * * * * *
69513598 TAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCTTTGGTGAGTTC-ATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
* * * * * * *
69513651 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAGGA
1 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
69513705 AA
1 AA
69513707 AGGTTCCTGA
Statistics
Matches: 187, Mismatches: 27, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
52 4 0.02
53 40 0.21
54 50 0.27
55 39 0.21
56 4 0.02
59 50 0.27
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
Found at i:69513680 original size:108 final size:109
Alignment explanation
Indices: 69513430--69513706 Score: 317
Period size: 108 Copynumber: 2.5 Consensus size: 109
69513420 TTGGTAAGAT
* * * *
69513430 AAGGATATCATGTAAGACCATGCCAAGGCATAGCATTGATAAGTTCTATAAGGAAAGGAAATCAT
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGAAAGGAAACCAT
* *
69513495 GTAAGACAAGACCATGCCAAGTCATGGCATTGATAAGTTCTATAAGTC
66 GT---A-AAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* **
69513543 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGATAAGG-TCCC
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGA-AAGGAAACC
* * *
69513607 ATGT-AAGACCATGCCAAGGCATGGCTTTGGTGAGTTC-ATAAGGC
64 ATGTAAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * * *
69513651 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAGGAAA
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGAAA
69513707 AGGTTCCTGA
Statistics
Matches: 143, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
106 2 0.01
107 7 0.05
108 46 0.32
109 29 0.20
113 41 0.29
114 14 0.10
115 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.22
Consensus pattern (109 bp):
AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGAAAGGAAACCAT
GTAAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:69513697 original size:53 final size:54
Alignment explanation
Indices: 69513430--69513696 Score: 268
Period size: 59 Copynumber: 4.9 Consensus size: 54
69513420 TTGGTAAGAT
* * * *
69513430 AAGGATATCATGTAAGACCATGCCAAGGCATAGCATTGATAAGTTCTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
69513484 AAGGAAATCATGTAAGACAAGACCATGCCAAGTCATGGCATTGATAAGTTCTATAAGTC
1 AAGGATACCATGT-----AAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
69513543 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGG-C
* * * * *
69513599 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCTTTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
69513651 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
69513697 AAAAAGGAAA
Statistics
Matches: 180, Mismatches: 25, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
52 4 0.02
53 40 0.22
54 43 0.24
55 39 0.22
56 4 0.02
59 50 0.28
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:69516251 original size:49 final size:48
Alignment explanation
Indices: 69516176--69516305 Score: 154
Period size: 49 Copynumber: 2.7 Consensus size: 48
69516166 GTCTTACACT
* *
69516176 GATGCCATGTCCCAGAAAGGTCTTACATTGACTTTCATATATCAAGGT-C
1 GATGCCATGTCCCAGAAAGGTATTACATTGACTCTCATATATC--GGTCC
* * *
69516225 GATGCCATGTCCCAGACAGGTATTACATTGGCTCTCATGTATCGGTGCC
1 GATGCCATGTCCCAGAAAGGTATTACATTGACTCTCATATATCGGT-CC
* * *
69516274 GATGCCATGTCCCAGAAAAGTCTTACACTGAC
1 GATGCCATGTCCCAGAAAGGTATTACATTGAC
69516306 ACACAACAAG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
47 3 0.04
49 66 0.96
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGAAAGGTATTACATTGACTCTCATATATCGGTCC
Found at i:69523011 original size:48 final size:48
Alignment explanation
Indices: 69522911--69523278 Score: 254
Period size: 45 Copynumber: 7.8 Consensus size: 48
69522901 TATTTGTGTA
* *
69522911 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCACT-A-A-GAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC-A--GCATTGAGATGAGAG
* *
69522957 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAGAG
* * *
69523005 CTAGTGTAAGA-CATGTCTTGGACAT--CATCGGCCTTGAGATGTA-AG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATG-AGAG
* *
69523050 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCAG--TTACGAGATGTG-T
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT--GAGATGAGAG
* *
69523095 C-AGTGTAAGCCCATGTCTGGGACATGGCATC-GACACGTAT-AGA-G-GTG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CA--T-TGAGATGAGAG
* ** *
69523142 TTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGGATATGTGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGA--TGAGAG
* * * * ** *
69523192 CTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATA-
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGA-GATGAGAG
* *
69523240 ATCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCAGCATT
69523279 ATACCTTATG
Statistics
Matches: 262, Mismatches: 32, Indels: 53
0.76 0.09 0.15
Matches are distributed among these distances:
44 10 0.04
45 58 0.22
46 31 0.12
47 30 0.11
48 55 0.21
49 39 0.15
50 37 0.14
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAGAG
Found at i:69524301 original size:28 final size:28
Alignment explanation
Indices: 69524261--69524316 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
69524251 ACATGGGCTA
69524261 GGACATGGGC-GTGTCATGGCCGTGTGAG
1 GGACATGGGCGGTGTCA-GGCCGTGTGAG
69524289 GGACATGGGCGTGTGTCAGGCCGTGTGA
1 GGACATGGGCG-GTGTCAGGCCGTGTGA
69524317 AAACCCCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 10 0.38
29 10 0.38
30 6 0.23
ACGTcount: A:0.14, C:0.18, G:0.46, T:0.21
Consensus pattern (28 bp):
GGACATGGGCGGTGTCAGGCCGTGTGAG
Found at i:69536573 original size:47 final size:48
Alignment explanation
Indices: 69536518--69536622 Score: 122
Period size: 49 Copynumber: 2.2 Consensus size: 48
69536508 CCAGATATTG
* *
69536518 TCTTACACTAGCTAGC-ACATCAAAGTCGATGCCATGTCCTAGACAGC
1 TCTTACACTAACTAGCAACATCAAAGCCGATGCCATGTCCTAGACAGC
** * * * *
69536565 TCTTACACTAACTTTCATATATCGAGGCCGATGCCATGTCCTAGACAGG
1 TCTTACACTAACTAGCA-ACATCAAAGCCGATGCCATGTCCTAGACAGC
69536614 TCTTACACT
1 TCTTACACT
69536623 GACTCTCATC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 13 0.27
49 35 0.73
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (48 bp):
TCTTACACTAACTAGCAACATCAAAGCCGATGCCATGTCCTAGACAGC
Found at i:69536666 original size:49 final size:49
Alignment explanation
Indices: 69536544--69536674 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 49
69536534 ACATCAAAGT
* *
69536544 CGATGCCATGTCCTAGAC-AGCTCTTACACTAACTTTCATATATCGAGGC
1 CGATGCCATGTCCTAGACAAG-TCTTACACTGACTCTCATATATCGAGGC
* *
69536593 CGATGCCATGTCCTAGACAGGTCTTACACTGACTCTCATCTATCG-GTGC
1 CGATGCCATGTCCTAGACAAGTCTTACACTGACTCTCATATATCGAG-GC
* * *
69536642 CGATGCCCTGTCCCAGACAAGTCTTAGACTGAC
1 CGATGCCATGTCCTAGACAAGTCTTACACTGAC
69536675 GCACAACAAG
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
48 1 0.01
49 70 0.97
50 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACAAGTCTTACACTGACTCTCATATATCGAGGC
Found at i:69543814 original size:55 final size:55
Alignment explanation
Indices: 69543727--69543846 Score: 168
Period size: 55 Copynumber: 2.2 Consensus size: 55
69543717 TATGAAGGTC
** * * *
69543727 CACGCCCGTGTTGTTTTGGCAGGTTCACCCACGGTTTGAAGGCACAGGCATTTTG
1 CACGCCCGTGTTAATTTGACAGGTTCACCCACGGTTTGAAGGCACAGGCATGTCG
* *
69543782 CACGCCCGTGTTAATTTGATAGGTTCAGCCACGGTTTGAAGGCACAGGCATGTCG
1 CACGCCCGTGTTAATTTGACAGGTTCACCCACGGTTTGAAGGCACAGGCATGTCG
*
69543837 CACGGCCGTG
1 CACGCCCGTG
69543847 GCAATTTATC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (55 bp):
CACGCCCGTGTTAATTTGACAGGTTCACCCACGGTTTGAAGGCACAGGCATGTCG
Found at i:69547540 original size:14 final size:13
Alignment explanation
Indices: 69547517--69547548 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
69547507 AGAATATCAA
69547517 AACAATAATTAAG
1 AACAATAATTAAG
69547530 AACACATAATTAAG
1 AACA-ATAATTAAG
69547544 AACAA
1 AACAA
69547549 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:69559702 original size:43 final size:43
Alignment explanation
Indices: 69559530--69559702 Score: 138
Period size: 43 Copynumber: 4.0 Consensus size: 43
69559520 AGCTTGTACA
* * *
69559530 ATGCCAATGTCCCATACGTGGTCTTACACGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* * * *
69559573 TTGCC-ACTGTCCTAGACAG-GGTCTTACATGAAATCAAATA-CA
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCG
* ** * * * *
69559615 ATACCAATATCCCGGACATGGTCTTAGACGTAAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAATC-AAATATCG
* *
69559659 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
69559702 A
1 A
69559703 AATCCTATGT
Statistics
Matches: 95, Mismatches: 27, Indels: 16
0.69 0.20 0.12
Matches are distributed among these distances:
42 21 0.22
43 47 0.49
44 27 0.28
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:69563353 original size:15 final size:15
Alignment explanation
Indices: 69563333--69563361 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
69563323 TACAAGCTTG
69563333 AAAATTAAGTCAAAT
1 AAAATTAAGTCAAAT
69563348 AAAATTAAGTCAAA
1 AAAATTAAGTCAAA
69563362 CATTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.24
Consensus pattern (15 bp):
AAAATTAAGTCAAAT
Found at i:69563422 original size:22 final size:22
Alignment explanation
Indices: 69563350--69563422 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
69563340 AGTCAAATAA
69563350 AATTAAGTCAAACATTT-ACTAT
1 AATTAAGTCAAACATTTGA-TAT
* * *
69563372 AATTAAATTAATACAAACTTGA-A-
1 AATTAAGTCAA-AC--ATTTGATAT
69563395 AATTAAGTCAAACATTTGATAT
1 AATTAAGTCAAACATTTGATAT
69563417 AATTAA
1 AATTAA
69563423 ATTAATACAA
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
20 5 0.13
21 1 0.03
22 17 0.44
23 11 0.28
24 1 0.03
25 3 0.08
26 1 0.03
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.34
Consensus pattern (22 bp):
AATTAAGTCAAACATTTGATAT
Found at i:69565449 original size:3 final size:3
Alignment explanation
Indices: 69565441--69565476 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
69565431 CAGTTAAAAA
69565441 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
69565477 TTGTAATACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:69575141 original size:18 final size:19
Alignment explanation
Indices: 69575120--69575159 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
69575110 TTGAACTTTA
69575120 TTTAAT-ATTCTTAT-AAAT
1 TTTAATAATT-TTATAAAAT
69575138 TTTAATAATTTTATAAAAT
1 TTTAATAATTTTATAAAAT
69575157 TTT
1 TTT
69575160 TAAAATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTAATAATTTTATAAAAT
Found at i:69578719 original size:14 final size:13
Alignment explanation
Indices: 69578698--69578737 Score: 57
Period size: 11 Copynumber: 3.2 Consensus size: 13
69578688 AATTCAAGTA
69578698 AATATTTAAACAT
1 AATATTTAAACAT
69578711 AATTATTTAAA-A-
1 AA-TATTTAAACAT
69578723 AATATTTAAACAT
1 AATATTTAAACAT
69578736 AA
1 AA
69578738 AATATAAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 8 0.33
12 3 0.12
13 5 0.21
14 8 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATTTAAACAT
Found at i:69587490 original size:21 final size:21
Alignment explanation
Indices: 69587464--69587504 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
69587454 AGACGAGCAA
* *
69587464 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
69587485 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
69587505 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:69593962 original size:19 final size:20
Alignment explanation
Indices: 69593935--69593995 Score: 81
Period size: 19 Copynumber: 3.1 Consensus size: 20
69593925 CATATTAATG
69593935 TTAATATTAAATAAATTTAA
1 TTAATATTAAATAAATTTAA
69593955 TT-ATATTAAATAAATTTAAA
1 TTAATATTAAATAAATTT-AA
* *
69593975 TTAATATT-TATTAATTTAA
1 TTAATATTAAATAAATTTAA
69593994 TT
1 TT
69593996 TTAATTTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
19 19 0.51
20 13 0.35
21 5 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTAATATTAAATAAATTTAA
Found at i:69594019 original size:20 final size:21
Alignment explanation
Indices: 69593967--69594007 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
69593957 ATATTAAATA
*
69593967 AATTTAA-ATTAATATTTATT
1 AATTTAATTTTAATATTTATT
69593987 AATTTAATTTTAAT-TTTATT
1 AATTTAATTTTAATATTTATT
69594007 A
1 A
69594008 TTATATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
AATTTAATTTTAATATTTATT
Found at i:69594049 original size:10 final size:10
Alignment explanation
Indices: 69594034--69594058 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
69594024 TATATTTGTG
69594034 TATTTTAATA
1 TATTTTAATA
69594044 TATTTTAATA
1 TATTTTAATA
69594054 TATTT
1 TATTT
69594059 CTTTCAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TATTTTAATA
Found at i:69594797 original size:18 final size:18
Alignment explanation
Indices: 69594776--69594810 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
69594766 AAAATTTAGG
69594776 TATTTTAGATT-TTTTAAT
1 TATTTT-GATTCTTTTAAT
69594794 TATTTTGATTCTTTTAA
1 TATTTTGATTCTTTTAA
69594811 AATTTTAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (18 bp):
TATTTTGATTCTTTTAAT
Found at i:69594815 original size:17 final size:18
Alignment explanation
Indices: 69594777--69594827 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
69594767 AAATTTAGGT
*
69594777 ATTTTAGATTTTTTAATT
1 ATTTTAGATTTTTTAATA
69594795 ATTTT-GATTCTTTTAA-A
1 ATTTTAGATT-TTTTAATA
*
69594812 ATTTTAAGAATTTTTA
1 ATTTT-AGATTTTTTA
69594828 TTTCAAGTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 9 0.32
18 16 0.57
19 3 0.11
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (18 bp):
ATTTTAGATTTTTTAATA
Found at i:69602107 original size:19 final size:20
Alignment explanation
Indices: 69602075--69602113 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
69602065 GAGAAGATAG
*
69602075 GGGAAGAAGAAGAAGAGAAA
1 GGGAAAAAGAAGAAGAGAAA
69602095 GGGAAAAAG-AGAAGAGAAA
1 GGGAAAAAGAAGAAGAGAAA
69602114 AATGGGGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (20 bp):
GGGAAAAAGAAGAAGAGAAA
Found at i:69617012 original size:48 final size:47
Alignment explanation
Indices: 69616950--69617131 Score: 141
Period size: 48 Copynumber: 3.8 Consensus size: 47
69616940 GTGGTGTTAC
*
69616950 AGAGCCACTATAAGACCATGTCTGGGACATGGCATCGGCCTCAATAT
1 AGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCAATAT
* * * ** * ***
69616997 ACGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTGTTAT
1 A-GAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCAATAT
* * * * * * *
69617045 ATGTGTCAGCATAAGACCATGACTGGGACATGGCATTGGCACTGATGTAT
1 A-GAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGC-CTCA-ATAT
*
69617095 GAGAGCCAGTGTAAGACCATGT-TCGGGACATGGCATC
1 -AGAGCCAGTATAAGACCATGTCT-GGGACATGGCATC
69617132 AGCATTTTGC
Statistics
Matches: 99, Mismatches: 31, Indels: 7
0.72 0.23 0.05
Matches are distributed among these distances:
47 1 0.01
48 65 0.66
49 2 0.02
50 30 0.30
51 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (47 bp):
AGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCAATAT
Found at i:69617126 original size:98 final size:96
Alignment explanation
Indices: 69616959--69617137 Score: 261
Period size: 98 Copynumber: 1.8 Consensus size: 96
69616949 CAGAGCCACT
* *
69616959 ATAAGACCATGTCTGGGACATGGCATCGGCCTCAATATACGAGCCAGTGTAAGACCATGTTTGGA
1 ATAAGACCATGACTGGGACATGGCATCGGCCTCAATATACGAGCCAGTGTAAGACCATGTTCGGA
69617024 ACATGGCATCAACATTGTTATATGTGTCAGC
66 ACATGGCATCAACATTGTTATATGTGTCAGC
* * *
69617055 ATAAGACCATGACTGGGACATGGCATTGGCACTGATGTATGA-GAGCCAGTGTAAGACCATGTTC
1 ATAAGACCATGACTGGGACATGGCATCGGC-CTCA-ATAT-ACGAGCCAGTGTAAGACCATGTTC
* *
69617119 GGGACATGGCATCAGCATT
63 GGAACATGGCATCAACATT
69617138 TTGCCCTTTT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
96 28 0.38
97 3 0.04
98 41 0.56
99 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (96 bp):
ATAAGACCATGACTGGGACATGGCATCGGCCTCAATATACGAGCCAGTGTAAGACCATGTTCGGA
ACATGGCATCAACATTGTTATATGTGTCAGC
Found at i:69625211 original size:9 final size:9
Alignment explanation
Indices: 69625197--69625228 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
69625187 AACGTGTTTT
69625197 TTGCATTCA
1 TTGCATTCA
69625206 TTGCATTCA
1 TTGCATTCA
69625215 TTGCATTCA
1 TTGCATTCA
69625224 -TGCAT
1 TTGCAT
69625229 CAGCATTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (9 bp):
TTGCATTCA
Found at i:69633464 original size:88 final size:88
Alignment explanation
Indices: 69633258--69634463 Score: 1408
Period size: 88 Copynumber: 13.7 Consensus size: 88
69633248 CGGTGAATTT
* * ** * * *
69633258 GTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGG-T-TGAATTATAGATATTATCTCCCTAAGC
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGC
* **
69633321 AGTAGCGGAGCAAATCGAAGATG
66 AGTAGCGGAGCAGATCGAAGACA
* * * * *
69633344 GTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCACCCTAAGC
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGC
* * **
69633409 AGTAG-GGAAACAGATTGAATTCA
66 AGTAGCGG-AGCAGATCGAAGACA
* * * *
69633432 CT-AGCCTTGACCCCTTAAGCAGTAAGGGTAACAGGCAAAAAATTATAGATCTCATCTCCCTCAA
1 GTAAGCCTTGACCCCCTAAGCAGT-AGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCT-AA
*
69633496 -CAGTAGCGGAGTAGATCGAAGACA
64 GCAGTAGCGGAGCAGATCGAAGACA
*
69633520 GTAAGCCTTAACCCCCTAAGCAGTAAGGGTAACAGG-TAGAAAATTACAGATCTCATCTCCCTAA
1 GTAAGCCTTGACCCCCTAAGCAGT-AGGGTAACAGGCTA-AAAATTACAGATCTCATCTCCCTAA
* *
69633584 GTAGTAGCGGAGCAAATCGAAGACA
64 GCAGTAGCGGAGCAGATCGAAGACA
* *
69633609 GTAAGCCTTGACCCCCTAAGCAGTAAGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGT
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGC
69633674 AGTAGCGGAGCAGATCGAAGACA
66 AGTAGCGGAGCAGATCGAAGACA
* * *
69633697 GTAAGCCTTGACCCCTTAAGCAGTTGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGC
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGC
*
69633762 AGTAGCGGAGCAGATCGAAAACA
66 AGTAGCGGAGCAGATCGAAGACA
* * * * * *
69633785 GTGAGCGTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCACCCTAAGC
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGC
* **
69633850 AGTAG-GGAAACAGATCGAATTCA
66 AGTAGCGG-AGCAGATCGAAGACA
* * *
69633873 CT-AGCCTTGACCCCCCAAGCAGTAGGGTAACAGGCAAAAAATTACAGATCTCATCTCCCTAAGC
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGC
* *
69633937 AGTTGCGGAGTAGATCGAAGACA
66 AGTAGCGGAGCAGATCGAAGACA
69633960 GTAAGCCTTGACCCCCTAAGCAGTAAGGGTAACAGG-TAAAAAATTACAGATCTCATCTCCCTAA
1 GTAAGCCTTGACCCCCTAAGCAGT-AGGGTAACAGGCT-AAAAATTACAGATCTCATCTCCCTAA
* * *
69634024 GCAGTAGCAGAGCAGATTGATGACA
64 GCAGTAGCGGAGCAGATCGAAGACA
* *
69634049 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAATAGGCTGAAAATTACAGATCTCATCTCCCTAAGC
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGC
* *
69634114 AGTAGCGGAGCAAATCGAAGATA
66 AGTAGCGGAGCAGATCGAAGACA
*
69634137 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTCATCTCCCTAAGC
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGC
*
69634202 AGTAGCAGAGCAGATCGAAGACA
66 AGTAGCGGAGCAGATCGAAGACA
* * * * * *
69634225 ATAAGTCTTGACCCCTTAAACAGTAGGGTAACAGGC-AGAAAATTACAGATCTTACCTCCCTAAG
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTA-AAAATTACAGATCTCATCTCCCTAAG
* ** * * *
69634289 CAATAGTTGAGTAGATCAAATACA
65 CAGTAGCGGAGCAGATCGAAGACA
* * * * * *** * * *
69634313 GGAAAACCTTAACCCCCTAAGTAGTAGGGTAACAGGTTGGGAATCACAGATCTTATCACCCTAAG
1 -GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAG
* * * *
69634378 CAGTAGGGGAACATATCAAAGAC-
65 CAGTAGCGGAGCAGATCGAAGACA
* * * * ** * *
69634401 GATGAGCCTTAACCCCTTAAGCAATAGGGTAACAGGCTGGAAATTCACAGATTTTATCTCCCT
1 G-TAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATT-ACAGATCTCATCTCCCT
69634464 GAAGTTACAG
Statistics
Matches: 968, Mismatches: 131, Indels: 39
0.85 0.12 0.03
Matches are distributed among these distances:
86 34 0.04
87 95 0.10
88 575 0.59
89 264 0.27
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (88 bp):
GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGC
AGTAGCGGAGCAGATCGAAGACA
Found at i:69633798 original size:265 final size:265
Alignment explanation
Indices: 69633258--69634463 Score: 1497
Period size: 265 Copynumber: 4.6 Consensus size: 265
69633248 CGGTGAATTT
* * *
69633258 GTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGTTG--AATTATAGATATTATCTCCCTAAGC
1 GTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGTAGAAAATTACAGATCTTATCTCCCTAAGC
** * * *
69633321 AGTAGCGGAGCAAATCGAAGATGGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAA
66 AGTAGCGGAGCAAATCGAAGACAGTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAA
* * * * ** *
69633386 TTACAGATCTTATCACCCTAAGCAGTAG-GGAAACAGATTGAATTCACT-AGCCTTGACCCCTTA
131 TTACAGATCTCATCTCCCTAAGCAGTAGCGG-AGCAGATCGAAGACAGTAAGCCTTGACCCCTTA
* * *
69633449 AGCAGTAAGGGTAACAGGCAAAAAATTATAGATCTCATCTCCCTCAA-CAGTAGCGGAGTAGATC
195 AGCAGTAAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCT-AAGCAGTAGCGGAGCAGATC
*
69633513 GAAGACA
259 GAAAACA
* *
69633520 GTAAGCCTTAACCCCCTAAGCAGTAAGGGTAACAGGTAGAAAATTACAGATCTCATCTCCCTAAG
1 GTAAGCCTTAACCCCCTAAGTAGT-AGGGTAACAGGTAGAAAATTACAGATCTTATCTCCCTAAG
* *
69633585 TAGTAGCGGAGCAAATCGAAGACAGTAAGCCTTGACCCCCTAAGCAGTAAGGTAACAGGCTAAAA
65 CAGTAGCGGAGCAAATCGAAGACAGTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAA
*
69633650 ATTACAGATCTCATCTCCCTAAGTAGTAGCGGAGCAGATCGAAGACAGTAAGCCTTGACCCCTTA
130 ATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAGCCTTGACCCCTTA
* *
69633715 AGCAGT-TGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCG
195 AGCAGTAAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAGATCG
69633779 AAAACA
260 AAAACA
* * *
69633785 GTGAGCGTTAACCCCCTAAGTAGTAGGGTAACAGGCTA-AAAATTACAGATCTTATCACCCTAAG
1 GTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGG-TAGAAAATTACAGATCTTATCTCCCTAAG
* * ** * * *
69633849 CAGTAG-GGAAACAGATCGAATTCACT-AGCCTTGACCCCCCAAGCAGTAGGGTAACAGGCAAAA
65 CAGTAGCGG-AGCAAATCGAAGACAGTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAA
* * *
69633912 AATTACAGATCTCATCTCCCTAAGCAGTTGCGGAGTAGATCGAAGACAGTAAGCCTTGACCCCCT
129 AATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAGCCTTGACCCCTT
*
69633977 AAGCAGTAAGGGTAACAGG-TAAAAAATTACAGATCTCATCTCCCTAAGCAGTAGCAGAGCAGAT
194 AAGCAGTAAGGGTAACAGGCT-AAAAATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAGAT
* **
69634041 TGATGACA
258 CGAAAACA
* * * *
69634049 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAATAGGCT-GAAAATTACAGATCTCATCTCCCTAAG
1 GTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGG-TAGAAAATTACAGATCTTATCTCCCTAAG
* *
69634113 CAGTAGCGGAGCAAATCGAAGATAGTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTGAAA
65 CAGTAGCGGAGCAAATCGAAGACAGTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAA
* * *
69634178 ATTACAGATCTCATCTCCCTAAGCAGTAGCAGAGCAGATCGAAGACAATAAGTCTTGACCCCTTA
130 ATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAGCCTTGACCCCTTA
* * * * ** *
69634243 AACAGT-AGGGTAACAGGC-AGAAAATTACAGATCTTACCTCCCTAAGCAATAGTTGAGTAGATC
195 AGCAGTAAGGGTAACAGGCTA-AAAATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAGATC
69634306 -AAATACA
259 GAAA-ACA
* * * ** * *
69634313 GGAAAACCTTAACCCCCTAAGTAGTAGGGTAACAGGTTGGGAATCACAGATCTTATCACCCTAAG
1 -GTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGTAGAAAATTACAGATCTTATCTCCCTAAG
* * * * * * * * **
69634378 CAGTAGGGGAACATATCAAAGAC-GATGAGCCTTAACCCCTTAAGCAATAGGGTAACAGGCTGGA
65 CAGTAGCGGAGCAAATCGAAGACAG-TAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAA
* *
69634442 AATTCACAGATTTTATCTCCCT
129 AATT-ACAGATCTCATCTCCCT
69634464 GAAGTTACAG
Statistics
Matches: 820, Mismatches: 104, Indels: 36
0.85 0.11 0.04
Matches are distributed among these distances:
262 23 0.03
263 120 0.15
264 235 0.29
265 404 0.49
266 38 0.05
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (265 bp):
GTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGTAGAAAATTACAGATCTTATCTCCCTAAGC
AGTAGCGGAGCAAATCGAAGACAGTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAAA
TTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACAGTAAGCCTTGACCCCTTAA
GCAGTAAGGGTAACAGGCTAAAAATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAGATCGA
AAACA
Found at i:69634110 original size:44 final size:43
Alignment explanation
Indices: 69634062--69634206 Score: 129
Period size: 44 Copynumber: 3.3 Consensus size: 43
69634052 AGCCTTGACC
69634062 CCCTAAGCAGTAGGGTAATAGGCTGAAAATTACAGATCTCATCT
1 CCCTAAGCAGTAGGGTAA-AGGCTGAAAATTACAGATCTCATCT
** * * * *
69634106 CCCTAAGCAGTAGCGG-AGCAAATC-GAAGATAGTA-AG-CCTTGA-CC
1 CCCTAAGCAGTAG-GGTA--AAGGCTGAA-A-ATTACAGATC-TCATCT
69634150 CCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTCATCT
1 CCCTAAGCAGTAGGGTAA-AGGCTGAAAATTACAGATCTCATCT
69634194 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
69634207 CAGAGCAGAT
Statistics
Matches: 77, Mismatches: 12, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
42 4 0.05
43 9 0.12
44 51 0.66
45 9 0.12
46 4 0.05
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.21
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAAAGGCTGAAAATTACAGATCTCATCT
Found at i:69634133 original size:440 final size:439
Alignment explanation
Indices: 69633258--69634290 Score: 1615
Period size: 440 Copynumber: 2.3 Consensus size: 439
69633248 CGGTGAATTT
* * ** * *
69633258 GTAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGG-TTGAATTATAGATATTATCTCCCTAAGCA
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCA
* **
69633322 GTAGCGGAGCAAATCGAAGATGGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAAT
66 GTAGCGGAGCAGATCGAAGACAGTGAG-CTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAAT
* **
69633387 TACAGATCTTATCACCCTAAGCAGTAGGGAAACAGATTGAATTCACTAGCCTTGACCCCTTAAGC
130 TACAGATCTTATCACCCTAAGCAGTAGGGAAACAGATCGAATTCACTAGCCTTGACCCCCCAAGC
*
69633452 AGTAAGGGTAACAGGCAAAAAATTATAGATCTCATCTCCCTCAACAGTAGCGGAGTAGATCGAAG
195 AGTAAGGGTAACAGGCAAAAAATTACAGATCTCATCTCCCTCAACAGTAGCGGAGTAGATCGAAG
*
69633517 ACAGTAAGCCTTAACCCCCTAAGCAGTAAGGGTAACAGGTAGAAAATTACAGATCTCATCTCCCT
260 ACAGTAAGCCTTAACCCCCTAAGCAGTAAGGGTAACAGGTAAAAAATTACAGATCTCATCTCCCT
* *
69633582 AAGTAGTAGCGGAGCAAATCGAAGACAGTAAGCCTTGACCCCCTAAGCAGTAAGGTAACAGGCTA
325 AAGCAGTAGCAGAGCAAATCGAAGACAGTAAGCCTTGACCCCCTAAGCAGTAAGGTAACAGGCTA
* *
69633647 AAAATTACAGATCTCATCTCCCTAAGTAGTAGCGGAGCAGATCGAAGACA
390 AAAATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAAATCGAAGACA
* *
69633697 GTAAGCCTTGACCCCTTAAGCAGTTGGGTAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGC
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCT-AAAATTACAGATCTTATCTCCCTAAGC
*
69633762 AGTAGCGGAGCAGATCGAAAACAGTGAGCGTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAA
65 AGTAGCGGAGCAGATCGAAGACAGTGAGC-TTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAA
69633827 TTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGATCGAATTCACTAGCCTTGACCCCCCAAG
129 TTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGATCGAATTCACTAGCCTTGACCCCCCAAG
*
69633892 CAGT-AGGGTAACAGGCAAAAAATTACAGATCTCATCTCCCT-AAGCAGTTGCGGAGTAGATCGA
194 CAGTAAGGGTAACAGGCAAAAAATTACAGATCTCATCTCCCTCAA-CAGTAGCGGAGTAGATCGA
*
69633955 AGACAGTAAGCCTTGACCCCCTAAGCAGTAAGGGTAACAGGTAAAAAATTACAGATCTCATCTCC
258 AGACAGTAAGCCTTAACCCCCTAAGCAGTAAGGGTAACAGGTAAAAAATTACAGATCTCATCTCC
* * * * *
69634020 CTAAGCAGTAGCAGAGCAGATTGATGACAGTAAGCCTTGACCCCCTAAGCAGTAGGGTAATAGGC
323 CTAAGCAGTAGCAGAGCAAATCGAAGACAGTAAGCCTTGACCCCCTAAGCAGTAAGGTAACAGGC
* *
69634085 TGAAAATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAAATCGAAGATA
388 TAAAAATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAAATCGAAGACA
*
69634137 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTCATCTCCCTAAGC
1 GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCT-AAAATTACAGATCTTATCTCCCTAAGC
* * * * * **
69634202 AGTAGCAGAGCAGATCGAAGACAATAAGTCTTGACCCCTTAAACAGTAGGGTAACAGGC-AGAAA
65 AGTAGCGGAGCAGATCGAAGACAGTGAG-CTTAACCCCCTAAGTAGTAGGGTAACAGGCTA-AAA
* *
69634266 ATTACAGATCTTACCTCCCTAAGCA
128 ATTACAGATCTTATCACCCTAAGCA
69634291 ATAGTTGAGT
Statistics
Matches: 544, Mismatches: 44, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
439 34 0.06
440 361 0.66
441 149 0.27
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (439 bp):
GTAAGCCTTGACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCA
GTAGCGGAGCAGATCGAAGACAGTGAGCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAATT
ACAGATCTTATCACCCTAAGCAGTAGGGAAACAGATCGAATTCACTAGCCTTGACCCCCCAAGCA
GTAAGGGTAACAGGCAAAAAATTACAGATCTCATCTCCCTCAACAGTAGCGGAGTAGATCGAAGA
CAGTAAGCCTTAACCCCCTAAGCAGTAAGGGTAACAGGTAAAAAATTACAGATCTCATCTCCCTA
AGCAGTAGCAGAGCAAATCGAAGACAGTAAGCCTTGACCCCCTAAGCAGTAAGGTAACAGGCTAA
AAATTACAGATCTCATCTCCCTAAGCAGTAGCGGAGCAAATCGAAGACA
Found at i:69635886 original size:3 final size:3
Alignment explanation
Indices: 69635878--69636113 Score: 153
Period size: 3 Copynumber: 78.0 Consensus size: 3
69635868 ATCATTTTAC
*** *
69635878 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CCG TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
69635926 TTA TT- TTCA TTA CTA TTA TT- TT- TTA GTTA -TA TTA TCA TTA TTA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * * * * **
69635969 TTC TTA CTA TTA TTA TTA TTA CTA CTA CTA TTA TTT TTA TTA ACA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * **
69636016 TTA TTA TT- TCCTA TTT TTA -TA TATA TTT TTA TTG TTA TTA ACA TATA
1 TTA TTA TTA T--TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA
* *
69636063 TTA TTA TTA TTA TTA TTAA TGTA CTA TTA TTT TCTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA T-TA TTA TTA TTA TTA
69636111 TTA
1 TTA
69636114 CTAATATCAC
Statistics
Matches: 181, Mismatches: 37, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
2 12 0.07
3 151 0.83
4 16 0.09
5 2 0.01
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:69636061 original size:22 final size:22
Alignment explanation
Indices: 69635953--69636077 Score: 86
Period size: 22 Copynumber: 5.9 Consensus size: 22
69635943 ATTTTTTAGT
*
69635953 TATATTATCATTATTATT--C-
1 TATATTATTATTATTATTAACA
*
69635972 T-TACTATTATTATTATT-AC-
1 TATATTATTATTATTATTAACA
* *
69635991 TACTACTATTATTTTTATTAACA
1 TA-TATTATTATTATTATTAACA
* *
69636014 TATTATTATT-TCCTATT-TTTATA
1 TA-TATTATTAT--TATTATTAACA
* *
69636037 TATATTTTTATTGTTATTAACA
1 TATATTATTATTATTATTAACA
69636059 TATATTATTATTATTATTA
1 TATATTATTATTATTATTA
69636078 TTAATGTACT
Statistics
Matches: 83, Mismatches: 14, Indels: 15
0.74 0.12 0.13
Matches are distributed among these distances:
18 14 0.17
19 3 0.04
21 18 0.22
22 30 0.36
23 15 0.18
24 3 0.04
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (22 bp):
TATATTATTATTATTATTAACA
Found at i:69636091 original size:36 final size:37
Alignment explanation
Indices: 69636051--69636128 Score: 95
Period size: 36 Copynumber: 2.1 Consensus size: 37
69636041 TTTTTATTGT
* *
69636051 TATTAACATATATTATTATTATTATTATTAATGT-AC
1 TATTAACATATATTATTATTATTATTACTAATATCAC
*** *
69636087 TATTATTTTCTATTATTATTATTATTACTAATATCAC
1 TATTAACATATATTATTATTATTATTACTAATATCAC
69636124 TATTA
1 TATTA
69636129 TCATTTTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
36 28 0.80
37 7 0.20
ACGTcount: A:0.36, C:0.08, G:0.01, T:0.55
Consensus pattern (37 bp):
TATTAACATATATTATTATTATTATTACTAATATCAC
Found at i:69636093 original size:45 final size:43
Alignment explanation
Indices: 69635976--69636129 Score: 126
Period size: 45 Copynumber: 3.6 Consensus size: 43
69635966 TTATTCTTAC
* *
69635976 TATTATTATTATTACTACTACTATTATTTTTATTAACATATTAT
1 TATTATTATTATTAATA-TACTATTATTGTTATTAACATATTAT
* * *
69636020 TATT-TCCTATTTTTATATATATTTTTATTGTTATTAACATATATTAT
1 TATTAT--TATTATTA-ATATACTATTATTGTTATTAAC--ATATTAT
*
69636067 TATTATTATTATTAATGTACTATTA---TT-TT--C-TATTAT
1 TATTATTATTATTAATATACTATTATTGTTATTAACATATTAT
*
69636103 TATTATTATTACTAATATCACTATTAT
1 TATTATTATTATTAATAT-ACTATTAT
69636130 CATTTTTATC
Statistics
Matches: 91, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
36 22 0.24
37 7 0.08
39 1 0.01
41 2 0.02
42 2 0.02
43 1 0.01
44 4 0.04
45 31 0.34
46 9 0.10
47 11 0.12
48 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.58
Consensus pattern (43 bp):
TATTATTATTATTAATATACTATTATTGTTATTAACATATTAT
Found at i:69636139 original size:18 final size:18
Alignment explanation
Indices: 69636118--69636156 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
69636108 TTATTACTAA
* *
69636118 TATCACTATTATCATTTT
1 TATCACCATCATCATTTT
*
69636136 TATCACCATCATTATTTT
1 TATCACCATCATCATTTT
69636154 TAT
1 TAT
69636157 TTATTATTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.18, G:0.00, T:0.54
Consensus pattern (18 bp):
TATCACCATCATCATTTT
Done.