Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 211 of 253
Found at i:69636159 original size:22 final size:22
Alignment explanation
Indices: 69636134--69636182 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
69636124 TATTATCATT
69636134 TTTATCACCATCATTATT-TTTA
1 TTTATCA-CATCATTATTATTTA
* **
69636156 TTTATTATTTCATTATTATTTA
1 TTTATCACATCATTATTATTTA
69636178 TTTAT
1 TTTAT
69636183 TCTTACCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTATCACATCATTATTATTTA
Found at i:69636182 original size:11 final size:11
Alignment explanation
Indices: 69636147--69636183 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
69636137 ATCACCATCA
69636147 TTATT-TTTAT
1 TTATTATTTAT
69636157 TTATTATTTCA-
1 TTATTATTT-AT
69636168 TTATTATTTAT
1 TTATTATTTAT
69636179 TTATT
1 TTATT
69636184 CTTACCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 6 0.25
11 17 0.71
12 1 0.04
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTATTTAT
Found at i:69639045 original size:17 final size:19
Alignment explanation
Indices: 69639015--69639056 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
69639005 TCTCTTATAA
69639015 TTTTTGATATTTCC-TCAT
1 TTTTTGATATTTCCTTCAT
*
69639033 TTTTTGGTA-TTCCTTCAT
1 TTTTTGATATTTCCTTCAT
69639051 TATTTT
1 T-TTTT
69639057 TAATACACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 13 0.62
19 4 0.19
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (19 bp):
TTTTTGATATTTCCTTCAT
Found at i:69639493 original size:20 final size:20
Alignment explanation
Indices: 69639470--69639519 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
69639460 ATTTCATTAT
* *
69639470 ATTTTTTGTGTTCCCTTAGA
1 ATTTTTTGTATACCCTTAGA
* *
69639490 ATTTTTGGTATAGCCTTAGA
1 ATTTTTTGTATACCCTTAGA
*
69639510 AATTTTTGTA
1 ATTTTTTGTA
69639520 CTTTCTCATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.10, G:0.16, T:0.52
Consensus pattern (20 bp):
ATTTTTTGTATACCCTTAGA
Found at i:69639537 original size:20 final size:19
Alignment explanation
Indices: 69639512--69639577 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 19
69639502 GCCTTAGAAA
69639512 TTTTTGTACTTTCTCATATT
1 TTTTTGTA-TTTCTCATATT
*
69639532 TTTTTGTATTCTCTCATAAT
1 TTTTTGTATT-TCTCATATT
*
69639552 ATTTTGTATATTCTCATAATT
1 TTTTTGTAT-TTCTCAT-ATT
69639573 TTTTT
1 TTTTT
69639578 TTACATTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
19 2 0.05
20 30 0.77
21 7 0.18
ACGTcount: A:0.20, C:0.12, G:0.05, T:0.64
Consensus pattern (19 bp):
TTTTTGTATTTCTCATATT
Found at i:69639576 original size:60 final size:60
Alignment explanation
Indices: 69639429--69639576 Score: 140
Period size: 60 Copynumber: 2.5 Consensus size: 60
69639419 GTATCCTTCA
* * * * *
69639429 AATATTTTGGTATTTTCTCATAATTTTTAATATTTCATTATATTTTTTGTGTTCCCTTAG
1 AATATTTTGGTATATTCTCATAATTTTTTATATTTCATCATATTTTTTGTATTCCCTCAG
** * * * * * *
69639489 AAT-TTTTGGTATAGCCTTAGAAATTTTTGTACTTTC-TCATATTTTTTTGTATTCTCTCAT
1 AATATTTTGGTATATTCTCATAATTTTTTATA-TTTCATCATA-TTTTTTGTATTCCCTCAG
69639549 AATATTTT-GTATATTCTCATAATTTTTT
1 AATATTTTGGTATATTCTCATAATTTTTT
69639577 TTTACATTTT
Statistics
Matches: 67, Mismatches: 18, Indels: 6
0.74 0.20 0.07
Matches are distributed among these distances:
59 24 0.36
60 39 0.58
61 4 0.06
ACGTcount: A:0.24, C:0.11, G:0.08, T:0.57
Consensus pattern (60 bp):
AATATTTTGGTATATTCTCATAATTTTTTATATTTCATCATATTTTTTGTATTCCCTCAG
Found at i:69640572 original size:18 final size:20
Alignment explanation
Indices: 69640549--69640597 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
69640539 AGATGATTAT
69640549 ATAAAAAT-TTAAATAA-AA
1 ATAAAAATATTAAATAATAA
69640567 ATAAAAAATTATTAAATAATAA
1 AT-AAAAA-TATTAAATAATAA
*
69640589 ATTAAAATA
1 ATAAAAATA
69640598 ATATATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 2 0.08
19 5 0.19
20 3 0.12
21 12 0.46
22 4 0.15
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAAAAATATTAAATAATAA
Found at i:69640583 original size:21 final size:25
Alignment explanation
Indices: 69640557--69640605 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 25
69640547 ATATAAAAAT
69640557 TTAAATAA-AAA-TAAAA-AAT-TA
1 TTAAATAATAAATTAAAATAATATA
69640578 TTAAATAATAAATTAAAATAATATA
1 TTAAATAATAAATTAAAATAATATA
69640603 TTA
1 TTA
69640606 TTTTTTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.33
22 3 0.12
23 5 0.21
24 3 0.12
25 5 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
TTAAATAATAAATTAAAATAATATA
Found at i:69640599 original size:13 final size:13
Alignment explanation
Indices: 69640558--69640605 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
69640548 TATAAAAATT
*
69640558 TAAATAAAAATAA
1 TAAATTAAAATAA
*
69640571 AAAATTATTAAATAA
1 TAAATTA--AAATAA
69640586 TAAATTAAAATAA
1 TAAATTAAAATAA
*
69640599 TATATTA
1 TAAATTA
69640606 TTTTTTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 17 0.59
15 12 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAATTAAAATAA
Found at i:69641076 original size:20 final size:20
Alignment explanation
Indices: 69641053--69641146 Score: 93
Period size: 20 Copynumber: 4.7 Consensus size: 20
69641043 TGGTACTAGT
69641053 CTCATAATTTTTTATACTTC
1 CTCATAATTTTTTATACTTC
** *
69641073 CTCATTTTTTTTTATATTTC
1 CTCATAATTTTTTATACTTC
* *
69641093 CTCATAATTTTTTACACTCC
1 CTCATAATTTTTTATACTTC
*
69641113 CTCATATATTTTTGGTATGC-T-
1 CTCATA-ATTTTT--TATACTTC
69641134 CTCATAATTTTTT
1 CTCATAATTTTTT
69641147 GTATTCTTTC
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
18 1 0.02
20 44 0.73
21 12 0.20
23 3 0.05
ACGTcount: A:0.21, C:0.19, G:0.03, T:0.56
Consensus pattern (20 bp):
CTCATAATTTTTTATACTTC
Found at i:69641083 original size:40 final size:41
Alignment explanation
Indices: 69641038--69641146 Score: 118
Period size: 40 Copynumber: 2.7 Consensus size: 41
69641028 TTCCTCTTAA
* *
69641038 ATTTTTGGTACTAGTCTCATAATTTTTTATACTTCCTCAT-T
1 ATTTTTGGTA-TAGTCTCATAATTTTTTACACTCCCTCATAT
* *
69641079 -TTTTT-TTATATTTCCTCATAATTTTTTACACTCCCTCATAT
1 ATTTTTGGTATA-GT-CTCATAATTTTTTACACTCCCTCATAT
69641120 ATTTTTGGTAT-GCTCTCATAATTTTTT
1 ATTTTTGGTATAG-TCTCATAATTTTTT
69641147 GTATTCTTTC
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
38 2 0.04
39 3 0.05
40 28 0.50
41 14 0.25
42 6 0.11
43 3 0.05
ACGTcount: A:0.21, C:0.17, G:0.06, T:0.56
Consensus pattern (41 bp):
ATTTTTGGTATAGTCTCATAATTTTTTACACTCCCTCATAT
Found at i:69641177 original size:22 final size:20
Alignment explanation
Indices: 69641114--69641178 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
69641104 TTACACTCCC
* *
69641114 TCATATATTTTTGGTATGCTC
1 TCATA-ATTTTTTGTATGCTT
*
69641135 TCATAATTTTTTGTATTCTT
1 TCATAATTTTTTGTATGCTT
69641155 TCATAATTTGTTTTGTATGCTT
1 TCATAA-TT-TTTTGTATGCTT
69641177 TC
1 TC
69641179 GAAGTAAGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 18 0.47
21 7 0.18
22 13 0.34
ACGTcount: A:0.18, C:0.12, G:0.11, T:0.58
Consensus pattern (20 bp):
TCATAATTTTTTGTATGCTT
Found at i:69641678 original size:21 final size:21
Alignment explanation
Indices: 69641636--69641681 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
69641626 TGAGGTTGTG
* * *
69641636 CAAAAAATTATGTGAGATTAC
1 CAAAAAAATATGAGAGACTAC
*
69641657 CAAAAAAATATGAGGGACTAC
1 CAAAAAAATATGAGAGACTAC
69641678 CAAA
1 CAAA
69641682 TATTTATTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.13, G:0.15, T:0.20
Consensus pattern (21 bp):
CAAAAAAATATGAGAGACTAC
Found at i:69641761 original size:37 final size:39
Alignment explanation
Indices: 69641718--69641795 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 39
69641708 TTATTTATTT
69641718 AATTTTTCATTTTTT-AAATTTATTAATATATATA-ACA
1 AATTTTTCATTTTTTAAAATTTATTAATATATATATACA
69641755 AATTTTTCATTTTTTAAAATTTATTAATATATATATACA
1 AATTTTTCATTTTTTAAAATTTATTAATATATATATACA
69641794 AA
1 AA
69641796 AAAAATTATA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 15 0.38
38 19 0.49
39 5 0.13
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (39 bp):
AATTTTTCATTTTTTAAAATTTATTAATATATATATACA
Found at i:69642688 original size:49 final size:50
Alignment explanation
Indices: 69642626--69642720 Score: 156
Period size: 49 Copynumber: 1.9 Consensus size: 50
69642616 TTGCATGATT
* * *
69642626 TTTTTATCTTGAGGCGTGAATCATTTTCCTTATCGCTTTATCTTTTTTTC
1 TTTTTATCTTGAGGCGTAAATCACTTTCCATATCGCTTTATCTTTTTTTC
69642676 TTTTTAT-TTGAGGCGTAAATCACTTTCCATATCGCTTTATCTTTT
1 TTTTTATCTTGAGGCGTAAATCACTTTCCATATCGCTTTATCTTTT
69642721 GACCGATATA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
49 35 0.83
50 7 0.17
ACGTcount: A:0.17, C:0.18, G:0.12, T:0.54
Consensus pattern (50 bp):
TTTTTATCTTGAGGCGTAAATCACTTTCCATATCGCTTTATCTTTTTTTC
Found at i:69645280 original size:41 final size:41
Alignment explanation
Indices: 69645235--69645317 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
69645225 ATTTATCCAA
69645235 AGCCAAACTGGAACAAGTCAAAAAAGAAATCCAATAAAACT
1 AGCCAAACTGGAACAAGTCAAAAAAGAAATCCAATAAAACT
*
69645276 AGCCAAACTGGAACAAGTCAAAAATGAAATCCAATAAAACT
1 AGCCAAACTGGAACAAGTCAAAAAAGAAATCCAATAAAACT
69645317 A
1 A
69645318 CATTTTTTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.55, C:0.19, G:0.12, T:0.13
Consensus pattern (41 bp):
AGCCAAACTGGAACAAGTCAAAAAAGAAATCCAATAAAACT
Found at i:69648585 original size:22 final size:23
Alignment explanation
Indices: 69648545--69648587 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
69648535 GATATTCAAC
69648545 TTTACAAATTTATTATTAAATTA
1 TTTACAAATTTATTATTAAATTA
69648568 TTTA-AAATTT-TTATTTAAAT
1 TTTACAAATTTATTA-TTAAAT
69648588 CACTAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 3 0.16
22 12 0.63
23 4 0.21
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (23 bp):
TTTACAAATTTATTATTAAATTA
Found at i:69648636 original size:31 final size:29
Alignment explanation
Indices: 69648561--69648647 Score: 111
Period size: 31 Copynumber: 2.9 Consensus size: 29
69648551 AATTTATTAT
**
69648561 TAAATTATTTAAAATTTTTATTTAAATCAC
1 TAAATTATTTAAAA-AATTATTTAAATCAC
*
69648591 TAAATTATTTAAAAAATTATTTAAGTCAC
1 TAAATTATTTAAAAAATTATTTAAATCAC
*
69648620 TAAAATATTTTTAAAAAATTATTTAAAT
1 T-AAAT-TATTTAAAAAATTATTTAAAT
69648648 TATTAGATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
29 13 0.26
30 18 0.36
31 19 0.38
ACGTcount: A:0.48, C:0.05, G:0.01, T:0.46
Consensus pattern (29 bp):
TAAATTATTTAAAAAATTATTTAAATCAC
Found at i:69649552 original size:14 final size:15
Alignment explanation
Indices: 69649524--69649561 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
69649514 AGACACAAAG
*
69649524 AAAAGGAAAATAGAA
1 AAAAAGAAAATAGAA
69649539 AAAAAGAAAA-AGAA
1 AAAAAGAAAATAGAA
*
69649553 AAAGAGAAA
1 AAAAAGAAA
69649562 GACCAAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (15 bp):
AAAAAGAAAATAGAA
Found at i:69651481 original size:11 final size:11
Alignment explanation
Indices: 69651467--69651491 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
69651457 AAAAAAATTG
69651467 TAATAAAATAA
1 TAATAAAATAA
69651478 TAATAAAATAA
1 TAATAAAATAA
69651489 TAA
1 TAA
69651492 GAGCTAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:69654289 original size:55 final size:55
Alignment explanation
Indices: 69654175--69654290 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 55
69654165 ATTACAAAAT
* * ** ** *
69654175 AAAATAAACATACACTACCAAAATTATCATAATACACAATTCTAACAATTCTAAT
1 AAAATAAACATACACTACCAAAACTATCATAATAAACAACACTAACAATAATAAA
*
69654230 AAAATAAACATACACTACCAAAACTATCTTAATAAACATACACT-ACAA-AATAACA
1 AAAATAAACATACACTACCAAAACTATCATAATAAACA-ACACTAACAATAATAA-A
69654285 AAAATA
1 AAAATA
69654291 TAATGTTCAA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
54 3 0.06
55 45 0.88
56 3 0.06
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.23
Consensus pattern (55 bp):
AAAATAAACATACACTACCAAAACTATCATAATAAACAACACTAACAATAATAAA
Found at i:69657522 original size:14 final size:14
Alignment explanation
Indices: 69657503--69657539 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
69657493 CTTGAATTTG
69657503 TGGTCCCGAAACTA
1 TGGTCCCGAAACTA
69657517 TGGTCCCGAAACTA
1 TGGTCCCGAAACTA
*
69657531 TGGTTCCGA
1 TGGTCCCGA
69657540 TTTCACTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (14 bp):
TGGTCCCGAAACTA
Found at i:69661506 original size:26 final size:26
Alignment explanation
Indices: 69661469--69661578 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
69661459 TGATACAAAT
* *
69661469 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69661495 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
69661521 TGATAATGAGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69661547 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
69661573 TGATAA
1 TGATAA
69661579 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:69673473 original size:20 final size:20
Alignment explanation
Indices: 69673423--69673473 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
69673413 TTAATCGAGT
* *
69673423 GGTTAATTATGTTTTAATTAA
1 GGTTAATTA-GCTTAAATTAA
*
69673444 -GTGAATTTAGCTTAAATTAA
1 GGTTAA-TTAGCTTAAATTAA
69673464 GGTTAATTAG
1 GGTTAATTAG
69673474 GTATAAGGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.45
Consensus pattern (20 bp):
GGTTAATTAGCTTAAATTAA
Found at i:69673638 original size:20 final size:22
Alignment explanation
Indices: 69673615--69673670 Score: 71
Period size: 20 Copynumber: 2.6 Consensus size: 22
69673605 TTTATGTCTT
69673615 AAATATATTAT-TTA-ATTATA
1 AAATATATTATATTATATTATA
69673635 AAATATATTATATTATATTATA
1 AAATATATTATATTATATTATA
**
69673657 TTATATTATTATAT
1 AAATA-TATTATAT
69673671 CATGTAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
20 11 0.35
21 3 0.10
22 9 0.29
23 8 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
AAATATATTATATTATATTATA
Found at i:69673648 original size:5 final size:5
Alignment explanation
Indices: 69673638--69673665 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
69673628 AATTATAAAA
69673638 TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TAT
69673666 TATATCATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:69673856 original size:18 final size:19
Alignment explanation
Indices: 69673824--69673870 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
69673814 TAAAACAAAT
69673824 GAAACAAATGAAATA-AAAA
1 GAAACAAA-GAAATAGAAAA
*
69673843 GAAATAAAGAAATAGAAAA
1 GAAACAAAGAAATAGAAAA
69673862 GAAACAAAG
1 GAAACAAAG
69673871 TAACAGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.72, C:0.04, G:0.15, T:0.09
Consensus pattern (19 bp):
GAAACAAAGAAATAGAAAA
Found at i:69673878 original size:19 final size:19
Alignment explanation
Indices: 69673824--69673878 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
69673814 TAAAACAAAT
*
69673824 GAAACAAATGAAATA-AAAA
1 GAAACAAA-GAAACAGAAAA
* *
69673843 GAAATAAAGAAATAGAAAA
1 GAAACAAAGAAACAGAAAA
*
69673862 GAAACAAAGTAACAGAA
1 GAAACAAAGAAACAGAA
69673879 TATGAAACGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 6 0.19
19 25 0.81
ACGTcount: A:0.71, C:0.05, G:0.15, T:0.09
Consensus pattern (19 bp):
GAAACAAAGAAACAGAAAA
Found at i:69673912 original size:8 final size:8
Alignment explanation
Indices: 69673895--69673931 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
69673885 ACGAAAACAG
*
69673895 AGAAGAAA
1 AGAAGGAA
69673903 AGAAGGAA
1 AGAAGGAA
69673911 AGAAAGGAA
1 AG-AAGGAA
69673920 AGAAGGAA
1 AGAAGGAA
69673928 AGAA
1 AGAA
69673932 AGGGAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (8 bp):
AGAAGGAA
Found at i:69673921 original size:17 final size:17
Alignment explanation
Indices: 69673901--69673934 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
69673891 ACAGAGAAGA
69673901 AAAGAAGGAAAGAAAGG
1 AAAGAAGGAAAGAAAGG
69673918 AAAGAAGGAAAGAAAGG
1 AAAGAAGGAAAGAAAGG
69673935 GAAATTAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (17 bp):
AAAGAAGGAAAGAAAGG
Found at i:69675285 original size:18 final size:18
Alignment explanation
Indices: 69675249--69675325 Score: 73
Period size: 18 Copynumber: 4.3 Consensus size: 18
69675239 TGACTATTAT
* * *
69675249 TGAATAATTGATCGTTAC
1 TGAATAACTGATTGCTAC
69675267 TGAATAACTGATTGCTAC
1 TGAATAACTGATTGCTAC
** * *
69675285 TGAGCAAATGATTGTTAC
1 TGAATAACTGATTGCTAC
* *
69675303 TGAGTAACTAATTGCTAC
1 TGAATAACTGATTGCTAC
69675321 TGAAT
1 TGAAT
69675326 GATTGAATGT
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (18 bp):
TGAATAACTGATTGCTAC
Found at i:69675337 original size:36 final size:36
Alignment explanation
Indices: 69675249--69675339 Score: 103
Period size: 36 Copynumber: 2.5 Consensus size: 36
69675239 TGACTATTAT
*
69675249 TGAATAATTG-ATCGTTACTGAATAACTGATTGCTAC
1 TGAATAATTGAAT-GTTACTGAATAACTAATTGCTAC
** * * *
69675285 TGAGCAAATGATTGTTACTGAGTAACTAATTGCTAC
1 TGAATAATTGAATGTTACTGAATAACTAATTGCTAC
*
69675321 TGAATGATTGAATGTTACT
1 TGAATAATTGAATGTTACT
69675340 AAATGAAATT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
36 42 0.98
37 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (36 bp):
TGAATAATTGAATGTTACTGAATAACTAATTGCTAC
Found at i:69678239 original size:20 final size:20
Alignment explanation
Indices: 69678189--69678239 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
69678179 TTAATCGAGT
* *
69678189 GGTTAATTAGGTTTTAATTAA
1 GGTTAATTA-GCTTAAATTAA
*
69678210 -GTGAATTTAGCTTAAATTAA
1 GGTTAA-TTAGCTTAAATTAA
69678230 GGTTAATTAG
1 GGTTAATTAG
69678240 GTATAAGAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (20 bp):
GGTTAATTAGCTTAAATTAA
Found at i:69678636 original size:19 final size:18
Alignment explanation
Indices: 69678599--69678639 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
69678589 TGAAACAAAT
*
69678599 GAAATAAAAAGAAATAAA
1 GAAATAAAAAGAAAGAAA
*
69678617 GAAATAGAAAAGAAGGAAA
1 GAAATA-AAAAGAAAGAAA
69678636 GAAA
1 GAAA
69678640 GAAAGAAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.07
Consensus pattern (18 bp):
GAAATAAAAAGAAAGAAA
Found at i:69679553 original size:27 final size:27
Alignment explanation
Indices: 69679523--69679578 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
69679513 TTGATTGAGA
69679523 ATGTGATGAAATAAATATGAATATGTG
1 ATGTGATGAAATAAATATGAATATGTG
69679550 ATGTGATGAAATAAATATGAATATGTG
1 ATGTGATGAAATAAATATGAATATGTG
69679577 AT
1 AT
69679579 TAATGTGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (27 bp):
ATGTGATGAAATAAATATGAATATGTG
Found at i:69680057 original size:18 final size:18
Alignment explanation
Indices: 69679991--69680062 Score: 65
Period size: 18 Copynumber: 4.1 Consensus size: 18
69679981 TGACTATTAT
* * *
69679991 TGAATAATTGATCGTTAC
1 TGAATAACTGATTGCTAC
69680009 TGAATAACTGATTGCT-C
1 TGAATAACTGATTGCTAC
** * *
69680026 TGAGCAAATGATTGTTAC
1 TGAATAACTGATTGCTAC
*
69680044 TGAATAACTAATTGCTAC
1 TGAATAACTGATTGCTAC
69680062 T
1 T
69680063 AAATGATTGA
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
17 13 0.32
18 28 0.68
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (18 bp):
TGAATAACTGATTGCTAC
Found at i:69698250 original size:21 final size:20
Alignment explanation
Indices: 69698212--69698254 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
69698202 ATCCCAATCC
69698212 CATGCATCAGATAATAACAA
1 CATGCATCAGATAATAACAA
69698232 CATGCATGCAG-TAAATAACAA
1 CATGCAT-CAGAT-AATAACAA
69698253 CA
1 CA
69698255 GTCAAACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.49, C:0.21, G:0.12, T:0.19
Consensus pattern (20 bp):
CATGCATCAGATAATAACAA
Found at i:69699882 original size:26 final size:26
Alignment explanation
Indices: 69699802--69699883 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
69699792 TGAAATTCCC
69699802 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
69699828 ATAATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69699854 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
69699880 ATCA
1 ATCA
69699884 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.26, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:69699894 original size:10 final size:10
Alignment explanation
Indices: 69699879--69699903 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
69699869 CCTAACCCAT
69699879 TATCAATTTG
1 TATCAATTTG
69699889 TATCAATTTG
1 TATCAATTTG
69699899 TATCA
1 TATCA
69699904 TAAATTATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (10 bp):
TATCAATTTG
Found at i:69702323 original size:21 final size:20
Alignment explanation
Indices: 69702294--69702333 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
69702284 CTTTGAAACA
69702294 GGGCACATGCCCATGTGGAG
1 GGGCACATGCCCATGTGGAG
*
69702314 GGGCAACATGCCCGTGTGGA
1 GGGC-ACATGCCCATGTGGA
69702334 AACTTGAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (20 bp):
GGGCACATGCCCATGTGGAG
Found at i:69703955 original size:13 final size:13
Alignment explanation
Indices: 69703937--69703962 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69703927 AAAACACCAG
69703937 ATTATATAACATA
1 ATTATATAACATA
69703950 ATTATATAACATA
1 ATTATATAACATA
69703963 CCAAAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ATTATATAACATA
Found at i:69705094 original size:17 final size:18
Alignment explanation
Indices: 69705064--69705097 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
69705054 AATTTCTATT
69705064 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
69705082 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
69705098 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:69706636 original size:46 final size:48
Alignment explanation
Indices: 69706583--69706732 Score: 141
Period size: 46 Copynumber: 3.2 Consensus size: 48
69706573 TCTTAGACGT
* * *
69706583 GTCTTACACTGGCT-TATGTCTCGAGGCTGCTG-CATGTCCCAAACAT-
1 GTCTTACACTGGCTCT-CGTCTCAAGGCTGATGCCATGTCCCAAACATG
* * *
69706629 GTTTTACACTAGCTCTCGTCTCAATGCTGATGCCATGTCCCAAACATG
1 GTCTTACACTGGCTCTCGTCTCAAGGCTGATGCCATGTCCCAAACATG
* * ** *
69706677 GTCTTACACTGGCTCTCATAAT-GTGGCTGATG-CATGTCCCAGACAT-
1 GTCTTACACTGGCTCTCGT-CTCAAGGCTGATGCCATGTCCCAAACATG
69706723 GTCTTACACT
1 GTCTTACACT
69706733 AGAACACAAA
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
46 34 0.40
47 28 0.33
48 23 0.27
49 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.31
Consensus pattern (48 bp):
GTCTTACACTGGCTCTCGTCTCAAGGCTGATGCCATGTCCCAAACATG
Found at i:69706673 original size:47 final size:45
Alignment explanation
Indices: 69706607--69706734 Score: 143
Period size: 47 Copynumber: 2.8 Consensus size: 45
69706597 TATGTCTCGA
* * *
69706607 GGCTGCTGCATGTCCCAAACATGTTTTACACTAGCTCTCGTCTCAA-T
1 GGCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTC--AT-AAGT
*
69706654 -GCTGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGT
1 GGCTGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATAA-GT
*
69706701 GGCTGATGCATGTCCCAGACATGTCTTACACTAG
1 GGCTGATGCATGTCCCAAACATGTCTTACACTAG
69706735 AACACAAATA
Statistics
Matches: 70, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
45 2 0.03
46 18 0.26
47 28 0.40
48 22 0.31
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (45 bp):
GGCTGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAAGT
Found at i:69707108 original size:30 final size:30
Alignment explanation
Indices: 69707072--69707145 Score: 148
Period size: 30 Copynumber: 2.5 Consensus size: 30
69707062 ATAATTGGGA
69707072 AAAATGACCATTTTGCCCTTAGACTTTCAC
1 AAAATGACCATTTTGCCCTTAGACTTTCAC
69707102 AAAATGACCATTTTGCCCTTAGACTTTCAC
1 AAAATGACCATTTTGCCCTTAGACTTTCAC
69707132 AAAATGACCATTTT
1 AAAATGACCATTTT
69707146 ACCCCATAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.34
Consensus pattern (30 bp):
AAAATGACCATTTTGCCCTTAGACTTTCAC
Found at i:69718053 original size:46 final size:47
Alignment explanation
Indices: 69717814--69718174 Score: 234
Period size: 46 Copynumber: 7.7 Consensus size: 47
69717804 GTATAATATC
* *
69717814 GATGCCATGTCCCAGACATGGTCTTACACTGGCTT--ATCCATCAAGTC-
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCTTACAT-C-TCAAGGCT
* * * **
69717861 GATACCATGTCCCAGACATGTTCTTACACTAAC-TATCGAAATCAAGGCT
1 GAT-GCATGTCCCAGACATGGTCTTACACTAGCTTA-C-ATCTCAAGGCT
* * * * * *
69717910 GATCCCATGTCCCAAACATGGTCTTACTA-TAGCTCTCACATATCCATGCC
1 GAT-GCATGTCCCAGACATGGTCTTAC-ACTAGCT-T-ACATCTCAAGGCT
* * *
69717960 GATGCCATGTCCCAGACATAGTCTTACATTGGC--ACATCTCATA-GCT
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCTTACATCTCA-AGGCT
* *
69718006 GATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCT
1 GATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCAAGGCT
* * *
69718052 GATACATGTCCCAGACA--GTCTTACACTATCTCT-CATCTCAATGCT
1 GATGCATGTCCCAGACATGGTCTTACACTAGCT-TACATCTCAAGGCT
* *
69718097 GATGCCATGTCCCAGACATGGTCTTATACTAGC-T-C-TCAT-AATGTGGT
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCTTACATC-TCAA-G-GCT
69718144 CGATGCATGTCCCAGACAT-GTCTTACACTAG
1 -GATGCATGTCCCAGACATGGTCTTACACTAG
69718175 TACACAAATA
Statistics
Matches: 255, Mismatches: 35, Indels: 49
0.75 0.10 0.14
Matches are distributed among these distances:
44 12 0.05
45 44 0.17
46 67 0.26
47 45 0.18
48 21 0.08
49 28 0.11
50 35 0.14
51 2 0.01
52 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCAAGGCT
Found at i:69726486 original size:43 final size:44
Alignment explanation
Indices: 69726400--69726512 Score: 126
Period size: 43 Copynumber: 2.6 Consensus size: 44
69726390 TGATTACACG
* *
69726400 TAAGACCATGTCTGGGACATTGGCAT-TATATTGAGATTACGTA
1 TAAGACCATTTCTGGGACATTGGCATCTATAATGAGATTACGTA
* * *
69726443 TAAGACCATTTCTGGGACATTGGCATCGT-TAAT-CGTTTTCGTA
1 TAAGACCATTTCTGGGACATTGGCATC-TATAATGAGATTACGTA
*
69726486 TAAGACC-TTGTCTGGGACAGTGGCATC
1 TAAGACCATT-TCTGGGACATTGGCATC
69726513 AATATGTGGT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
42 2 0.03
43 55 0.90
44 3 0.05
45 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (44 bp):
TAAGACCATTTCTGGGACATTGGCATCTATAATGAGATTACGTA
Found at i:69726756 original size:34 final size:34
Alignment explanation
Indices: 69726709--69726778 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
69726699 ATGAACCTGA
69726709 TTAAGATAATGAATATATGTTCAATGAGAAAGGT
1 TTAAGATAATGAATATATGTTCAATGAGAAAGGT
* *
69726743 TTAAGATATTGAATATATGTTTAATGAGAAAGGT
1 TTAAGATAATGAATATATGTTCAATGAGAAAGGT
69726777 TT
1 TT
69726779 TTGAAATTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.01, G:0.20, T:0.37
Consensus pattern (34 bp):
TTAAGATAATGAATATATGTTCAATGAGAAAGGT
Found at i:69726788 original size:34 final size:34
Alignment explanation
Indices: 69726709--69726790 Score: 112
Period size: 34 Copynumber: 2.4 Consensus size: 34
69726699 ATGAACCTGA
69726709 TTAAGATAA-TGAATATATGTTCAATGAGAAAGGT
1 TTAAGA-AATTGAATATATGTTCAATGAGAAAGGT
* *
69726743 TTAAGATATTGAATATATGTTTAATGAGAAAGGT
1 TTAAGAAATTGAATATATGTTCAATGAGAAAGGT
**
69726777 TTTTGAAATTGAAT
1 TTAAGAAATTGAAT
69726791 GTGAATCGCT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
33 1 0.02
34 41 0.98
ACGTcount: A:0.41, C:0.01, G:0.20, T:0.38
Consensus pattern (34 bp):
TTAAGAAATTGAATATATGTTCAATGAGAAAGGT
Found at i:69729037 original size:40 final size:40
Alignment explanation
Indices: 69728982--69729166 Score: 246
Period size: 40 Copynumber: 4.6 Consensus size: 40
69728972 TATTCGGATG
69728982 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
69729022 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
69729065 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
69729105 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
69729145 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69729167 TAATTGGTTT
Statistics
Matches: 127, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 14 0.11
40 76 0.60
41 1 0.01
43 36 0.28
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:69729125 original size:83 final size:80
Alignment explanation
Indices: 69728986--69729166 Score: 247
Period size: 83 Copynumber: 2.2 Consensus size: 80
69728976 CGGATGATAT
* * *
69728986 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCAGGCTAAGACCCGAAGGCATGTG
*
69729051 TGCGAGTAGTTGCTATAC
66 TGC---TAGTTACTATAC
* * *
69729069 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCAGGCTAAGACCCGAAGGCATGTG
*
69729134 TGCTAGTTACTATAT
66 TGCTAGTTACTATAC
*
69729149 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
69729167 TAATTGGTTT
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 15 0.17
80 12 0.13
83 62 0.70
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCAGGCTAAGACCCGAAGGCATGTG
TGCTAGTTACTATAC
Found at i:69731984 original size:17 final size:17
Alignment explanation
Indices: 69731962--69731995 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
69731952 AAAAAATATT
69731962 TTGTATTTATTTCCATC
1 TTGTATTTATTTCCATC
69731979 TTGTATTTATTTCCATC
1 TTGTATTTATTTCCATC
69731996 ATTCTCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59
Consensus pattern (17 bp):
TTGTATTTATTTCCATC
Found at i:69739842 original size:30 final size:30
Alignment explanation
Indices: 69739808--69739867 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69739798 TTCCCGAGCC
*
69739808 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
69739838 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
69739868 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:69741684 original size:33 final size:33
Alignment explanation
Indices: 69741642--69741709 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
69741632 TTTGAGCTAT
69741642 TTAAGTAATGAATTAAGTCTGTTAACACCT-GTG
1 TTAAGTAATGAATTAAGTCTGTTAAC-CCTCGTG
69741675 TTAAGTAATGAATTAAGTCTGTTAACCCTCGTG
1 TTAAGTAATGAATTAAGTCTGTTAACCCTCGTG
69741708 TT
1 TT
69741710 CGACTCCGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 3 0.09
33 31 0.91
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (33 bp):
TTAAGTAATGAATTAAGTCTGTTAACCCTCGTG
Found at i:69747378 original size:30 final size:30
Alignment explanation
Indices: 69747344--69747403 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
69747334 TTCCCGAGCC
*
69747344 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* * *
69747374 TAGGGGTAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
69747404 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:69750754 original size:5 final size:5
Alignment explanation
Indices: 69750744--69750768 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
69750734 TTTTTCTTGC
69750744 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
69750769 TATTATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:69760046 original size:26 final size:26
Alignment explanation
Indices: 69759977--69760059 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
69759967 CATGAAATTC
* *
69759977 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
69760003 TTATCAT-GAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
69760028 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
69760054 TTATCA
1 TTATCA
69760060 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
25 23 0.43
26 31 0.57
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:69764150 original size:25 final size:27
Alignment explanation
Indices: 69764113--69764165 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
69764103 TCAAACATGC
69764113 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
69764139 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
69764165 A
1 A
69764166 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:69765687 original size:26 final size:26
Alignment explanation
Indices: 69765649--69765732 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
69765639 CATGAAATTC
* *
69765649 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
69765675 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
69765701 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
69765727 TTATCA
1 TTATCA
69765733 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:69769640 original size:48 final size:48
Alignment explanation
Indices: 69769522--69769797 Score: 246
Period size: 48 Copynumber: 5.9 Consensus size: 48
69769512 AACATAGTAA
* * * * * *
69769522 GATGCCAATGCCATATCCCAGATATGGACTTACATGGGATCACAAATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCATATC
* * *
69769570 GAAG-C--TG--ATAG-CCCAG-CTATGGTCTTACACAATG-TCTCATATC
1 GATGCCAATGCCAT-GTCCCAGAC-ATGGTCTTACA-TAGGATCTCATATC
* * * * **
69769613 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCATATC
* * *
69769661 AATGCCAATGCCATGTCCCAGACATGGTCATACATAGGATCTTATAAT-
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCAT-ATC
* * * *
69769709 GATACCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCATAAC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCATATC
*
69769757 GATGCCAATGCCATGTCCCAGACATGGTCTTACGTAGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATC
69769798 ACACATAACC
Statistics
Matches: 177, Mismatches: 38, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
43 27 0.15
44 2 0.01
45 2 0.01
46 2 0.01
47 3 0.02
48 140 0.79
49 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCATATC
Found at i:69769730 original size:96 final size:96
Alignment explanation
Indices: 69769617--69769797 Score: 272
Period size: 96 Copynumber: 1.9 Consensus size: 96
69769607 CATATCGATG
* **
69769617 CCAATGCCATATCCCAGATATGGTCTTACATGGGATCACACGTCAATGCCAATGCCATGTCCCAG
1 CCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACAACAATGCCAATGCCATGTCCCAG
69769682 ACATGGTCATACATAGGATCTTATAATGATA
66 ACATGGTCATACATAGGATCTTATAATGATA
* * * * *
69769713 CCAATGTCATGTCCCAGACATGGTCTTACATGGGATCTCATAACGATGCCAATGCCATGTCCCAG
1 CCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACAACAATGCCAATGCCATGTCCCAG
* *
69769778 ACATGGTCTTACGTAGGATC
66 ACATGGTCATACATAGGATC
69769798 ACACATAACC
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (96 bp):
CCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACAACAATGCCAATGCCATGTCCCAG
ACATGGTCATACATAGGATCTTATAATGATA
Found at i:69771029 original size:57 final size:58
Alignment explanation
Indices: 69770935--69771074 Score: 144
Period size: 57 Copynumber: 2.4 Consensus size: 58
69770925 TGTATACAAC
* ** * * *
69770935 AGGATTA-CCAGTCCAGGCTAAATCCTTTCTATTACATATGCTCTA-AGGAACTTGAT-CT
1 AGGATTACCCA-TTCAGGCTAAATCCAATCCATAACATATGCTCGAGAGG-ACTT-ATACT
*
69770993 A-GATTACCCATTCAGGCTAAATCCAATCCATAACATATGCTCGAGAGGACTTATATT
1 AGGATTACCCATTCAGGCTAAATCCAATCCATAACATATGCTCGAGAGGACTTATACT
* *
69771050 AGGATTACCCGTTTAGGCTAAATCC
1 AGGATTACCCATTCAGGCTAAATCC
69771075 TGTCAGCAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
56 2 0.03
57 39 0.57
58 28 0.41
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (58 bp):
AGGATTACCCATTCAGGCTAAATCCAATCCATAACATATGCTCGAGAGGACTTATACT
Found at i:69778275 original size:43 final size:43
Alignment explanation
Indices: 69778213--69778316 Score: 163
Period size: 43 Copynumber: 2.4 Consensus size: 43
69778203 TTATTTGAAA
*
69778213 AAACGCCGCTAAAGATCAGGACCTTTAGCACCACTTTTCCCAC
1 AAACGCCGCTAAAGGTCAGGACCTTTAGCACCACTTTTCCCAC
* ** *
69778256 AAACGCCGCTATAGGTCAGGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCAGGACCTTTAGCACCACTTTTCCCAC
69778299 AAACGCCGCTAAAGGTCA
1 AAACGCCGCTAAAGGTCA
69778317 TAAAAATTAA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.20
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCAGGACCTTTAGCACCACTTTTCCCAC
Found at i:69778348 original size:18 final size:17
Alignment explanation
Indices: 69778316--69778350 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
69778306 GCTAAAGGTC
69778316 ATAAAAATTAAAAAAAA
1 ATAAAAATTAAAAAAAA
69778333 ATAAAATATTATAAAAAA
1 ATAAAA-ATTA-AAAAAA
69778351 GTCCTGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 4 0.25
19 6 0.38
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (17 bp):
ATAAAAATTAAAAAAAA
Found at i:69782566 original size:15 final size:15
Alignment explanation
Indices: 69782519--69782567 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
69782509 CCCCTATCAC
*
69782519 CACCTCTTCCACCAC
1 CACCTCTTCCACCAT
* *
69782534 CTCCTCTTCC-TC-T
1 CACCTCTTCCACCAT
69782547 C-CCTCTTCCACCAT
1 CACCTCTTCCACCAT
69782561 CACCTCT
1 CACCTCT
69782568 GCCCCTAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
12 8 0.30
13 2 0.07
14 3 0.11
15 14 0.52
ACGTcount: A:0.12, C:0.57, G:0.00, T:0.31
Consensus pattern (15 bp):
CACCTCTTCCACCAT
Found at i:69783054 original size:23 final size:23
Alignment explanation
Indices: 69783035--69783097 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
69783025 TAAAAAATGC
69783035 TAATACAATTACATATAAAATTT
1 TAATACAATTACATATAAAATTT
*
69783058 TAATA-AATATAAAT-TAAAAATTT
1 TAATACAAT-TACATAT-AAAATTT
69783081 TAATACAATTACATATA
1 TAATACAATTACATATA
69783098 TAGGATATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
22 4 0.12
23 26 0.76
24 4 0.12
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (23 bp):
TAATACAATTACATATAAAATTT
Found at i:69783117 original size:46 final size:46
Alignment explanation
Indices: 69783035--69783124 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
69783025 TAAAAAATGC
*
69783035 TAATACAATTACATATAAAATTTTAATAAATATAAATTAAAAATTT
1 TAATACAATTACATATAAAATATTAATAAATATAAATTAAAAATTT
* *
69783081 TAATACAATTACATATATAGGATATTAA-ATAT-TAAATTAAAAAT
1 TAATACAATTACATATA-A-AATATTAATAAATATAAATTAAAAAT
69783125 AATATAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
46 29 0.74
47 4 0.10
48 6 0.15
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (46 bp):
TAATACAATTACATATAAAATATTAATAAATATAAATTAAAAATTT
Found at i:69784267 original size:7 final size:7
Alignment explanation
Indices: 69784255--69784359 Score: 61
Period size: 7 Copynumber: 14.7 Consensus size: 7
69784245 ACTAATTAAT
69784255 CTAAACC
1 CTAAACC
69784262 CTAAACC
1 CTAAACC
*
69784269 TCTTAACCC
1 -C-TAAACC
*
69784278 CT-ATCC
1 CTAAACC
*
69784284 CATAAACA
1 C-TAAACC
*
69784292 CTAAACT
1 CTAAACC
69784299 CTAAACC
1 CTAAACC
*
69784306 CTTAACC
1 CTAAACC
**
69784313 CCGAACC
1 CTAAACC
*
69784320 CTTACACC
1 C-TAAACC
* *
69784328 TTAAACT
1 CTAAACC
69784335 CT-AACC
1 CTAAACC
*
69784341 CTAACCC
1 CTAAACC
69784348 CTAAACC
1 CTAAACC
69784355 CTAAA
1 CTAAA
69784360 TCATAATCTC
Statistics
Matches: 73, Mismatches: 19, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
6 9 0.12
7 51 0.70
8 8 0.11
9 5 0.07
ACGTcount: A:0.37, C:0.41, G:0.01, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:69784333 original size:36 final size:36
Alignment explanation
Indices: 69784255--69784376 Score: 110
Period size: 36 Copynumber: 3.4 Consensus size: 36
69784245 ACTAATTAAT
* * *
69784255 CTAAACCCTAAACCTCTTAACCCCTATCCCATAAACA
1 CTAAACTCTAAACC-CTTAACCCCGAACCCATAAACA
* *
69784292 CTAAACTCTAAACCCTTAACCCCGAACCCTTACAC-
1 CTAAACTCTAAACCCTTAACCCCGAACCCATAAACA
*
69784327 CTTAAACTCT-AACCC-TAACCCCTAAACCC-TAAATCA
1 C-TAAACTCTAAACCCTTAACCCC-GAACCCATAAA-CA
*
69784363 -TAATCTCTAAACCC
1 CTAAACTCTAAACCC
69784377 ATAATTCATC
Statistics
Matches: 72, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
34 17 0.24
35 17 0.24
36 25 0.35
37 13 0.18
ACGTcount: A:0.37, C:0.40, G:0.01, T:0.22
Consensus pattern (36 bp):
CTAAACTCTAAACCCTTAACCCCGAACCCATAAACA
Found at i:69784445 original size:21 final size:21
Alignment explanation
Indices: 69784419--69784503 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
69784409 ACTCCTAAAC
*
69784419 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
69784440 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
69784465 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
*
69784486 CTTAAATCATAAACCATA
1 CTTAAACCATAAACCATA
69784504 AACTATAATG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 31 0.60
22 3 0.06
24 3 0.06
25 15 0.29
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:69784455 original size:46 final size:46
Alignment explanation
Indices: 69784403--69784496 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
69784393 CTTCAAATAC
*
69784403 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
*
69784449 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAATCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
69784495 TA
1 TA
69784497 AACCATAAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
Found at i:69784498 original size:7 final size:7
Alignment explanation
Indices: 69784414--69784511 Score: 52
Period size: 7 Copynumber: 13.4 Consensus size: 7
69784404 AGTTAACTCC
*
69784414 TAAACCT
1 TAAACCA
*
69784421 TAAACCC
1 TAAACCA
69784428 TAAACCA
1 TAAACCA
* * *
69784435 TATATCT
1 TAAACCA
69784442 TAAACCA
1 TAAACCA
69784449 TAGTTAACTCA
1 TA---AAC-CA
*
69784460 TAAACCT
1 TAAACCA
*
69784467 TAAACCC
1 TAAACCA
69784474 TAAACCA
1 TAAACCA
* * *
69784481 TATATCT
1 TAAACCA
*
69784488 TAAATCA
1 TAAACCA
69784495 TAAACCA
1 TAAACCA
*
69784502 TAAACTA
1 TAAACCA
69784509 TAA
1 TAA
69784512 TGATAATTAA
Statistics
Matches: 69, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
7 59 0.86
8 3 0.04
10 3 0.04
11 4 0.06
ACGTcount: A:0.47, C:0.24, G:0.01, T:0.28
Consensus pattern (7 bp):
TAAACCA
Found at i:69784715 original size:41 final size:41
Alignment explanation
Indices: 69784669--69784969 Score: 388
Period size: 41 Copynumber: 7.4 Consensus size: 41
69784659 TTATATGACT
*
69784669 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTAGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* *
69784710 TTTAGCGGCGTTTTTACAAAAGCGCCGCTAGTGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* * *
69784751 TTTAGCGGCGTTTCTACAAAAGCGCCGCTAATGCTCTTGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* ** * * * * *
69784792 TTTAACTTCGTTCTGCCATAAGCGCCACTAATGCTCTTGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* *
69784833 TTTAGCGGCGTTTTGCCAAAAACGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* *
69784874 ATTAGCGGCGTTTTTCCATAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
* * * *
69784915 TTTAGCGGCGTTTTGCCAAAAGCGCCGTTAATGCTAT-ATC
1 TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
*
69784955 TTTAGCGGCATTTTT
1 TTTAGCGGCGTTTTT
69784970 GTAAAAAACG
Statistics
Matches: 225, Mismatches: 35, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
40 15 0.07
41 210 0.93
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:69786326 original size:19 final size:19
Alignment explanation
Indices: 69786302--69786338 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
69786292 TGTTAATTTA
*
69786302 GGGTTTTTTTTGCTTGTAG
1 GGGTTTCTTTTGCTTGTAG
*
69786321 GGGTTTCTTTTGTTTGTA
1 GGGTTTCTTTTGCTTGTA
69786339 TTGTTCTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.05, C:0.05, G:0.30, T:0.59
Consensus pattern (19 bp):
GGGTTTCTTTTGCTTGTAG
Found at i:69790298 original size:48 final size:48
Alignment explanation
Indices: 69790227--69790557 Score: 287
Period size: 48 Copynumber: 6.9 Consensus size: 48
69790217 GTGAATTGCT
* * * * * *
69790227 GATGCCATGTTCCAAACATGGTCTTACATTGGCTTACATGTCGA-GAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCAATGTC
* * *
69790274 AGATGCCATGTCCCATACATGGTCTTACACTAGCTCT-CGTCTCAATGTC
1 -GATGCCATGTCCCAAACATGGTCTTACACTAGCT-TACATATCAATGTC
* * * *
69790323 GATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATC-GTGGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCAAT-GTC
* ** *
69790371 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCAATGTC
* * * * *
69790419 GATGCCATGTCCCAGACATGGTCTTGCACTAGCTCTTA-TTAT-ATTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAG--CTTACATATCAATGTC
* * * * *
69790467 GATGCCATGTTCCAAACATGGTCTTACATTGGCTTTCATATC-ATGGTT
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCAAT-GTC
* * **
69790515 GATACCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCA
69790558 CCCAAATGTC
Statistics
Matches: 227, Mismatches: 45, Indels: 21
0.77 0.15 0.07
Matches are distributed among these distances:
46 3 0.01
47 6 0.03
48 209 0.92
49 7 0.03
50 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTTACATATCAATGTC
Found at i:69790391 original size:96 final size:96
Alignment explanation
Indices: 69790227--69790544 Score: 329
Period size: 96 Copynumber: 3.3 Consensus size: 96
69790217 GTGAATTGCT
* * * * *
69790227 GATGCCATGTTCCAAACATGGTCTTACATTGGCTTACATGTCG-AGACAGATGCCATGTCCCATA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTTTCATATCGTAGAC-GATGCCATGTCCCAAA
* *
69790291 CATGGTCTTACACTAGCTCTCGTCTCAATGTC
65 CATGGTCTTACACTAGCTCTCATATCAATGTC
* * * *
69790323 GATGCCATGTTCCAAACATGGTCTTACACTGGCTTTCATATCGTGGTCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTTTCATATCGTAGACGATGCCATGTCCCAAAC
* * *
69790388 ATGGTCTTACACTAGCGCACATATCAATGCC
66 ATGGTCTTACACTAGCTCTCATATCAATGTC
* * * * * * *
69790419 GATGCCATGTCCCAGACATGGTCTTGCACTAGCTCTT-ATTAT-ATTGCCGATGCCATGTTCCAA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCT-TTCA-TATCGTAGACGATGCCATGTCCCAA
* * * *
69790482 ACATGGTCTTACATTGGCTTTCATATC-ATGGTT
64 ACATGGTCTTACACTAGCTCTCATATCAAT-GTC
* *
69790515 GATACCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAAACATGGTCTTACACT
69790545 AGCACACATA
Statistics
Matches: 189, Mismatches: 29, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
95 2 0.01
96 180 0.95
97 7 0.04
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTTTCATATCGTAGACGATGCCATGTCCCAAAC
ATGGTCTTACACTAGCTCTCATATCAATGTC
Found at i:69790487 original size:144 final size:143
Alignment explanation
Indices: 69790275--69790557 Score: 442
Period size: 144 Copynumber: 2.0 Consensus size: 143
69790265 TGTCGAGACA
* * *
69790275 GATGCCATGTCCCATACATGGTCTTACACTAGCTCTCGTCTCAATGTCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TATCAATGCCGATGCCATGTTCCAAAC
* * *
69790340 ATGGTCTTACACTGGCTTTCATATCGTGGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCG
65 ATGGTCTTACACTGGCTTTCATATCATGGTCGATACCATGTCCCAGACATGGTCTTACACTAGCA
69790405 CACATATCAATGCC
130 CACATATCAATGCC
* *
69790419 GATGCCATGTCCCAGACATGGTCTTGCACTAGCTCT-TATTATATTGCCGATGCCATGTTCCAAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATCA-A-TGCCGATGCCATGTTCCAAA
* *
69790483 CATGGTCTTACATTGGCTTTCATATCATGGTTGATACCATGTCCCAGACATGGTCTTACACTAGC
64 CATGGTCTTACACTGGCTTTCATATCATGGTCGATACCATGTCCCAGACATGGTCTTACACTAGC
69790548 ACACATATCA
129 ACACATATCA
69790558 CCCAAATGTC
Statistics
Matches: 127, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
142 3 0.02
143 1 0.01
144 123 0.97
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (143 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATCAATGCCGATGCCATGTTCCAAACA
TGGTCTTACACTGGCTTTCATATCATGGTCGATACCATGTCCCAGACATGGTCTTACACTAGCAC
ACATATCAATGCC
Found at i:69798086 original size:48 final size:48
Alignment explanation
Indices: 69797990--69798270 Score: 269
Period size: 48 Copynumber: 5.9 Consensus size: 48
69797980 TGAATTGCCA
* * * * * *
69797990 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACTTGTCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAAGCCG
* * * * *
69798038 ATGGCATATCCCATACATGGTCTTACACTAGCTCTCATCTTAAAGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAAGCCG
* * * * ***
69798086 ATGCCATTTTCCAAACATGGTCTTACACTGGCTTTCATATCGTGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAAGCCG
* * * * * *
69798134 ATGTCATGTCCCAGACATGGTCTTACATTAGCGCACATATCAATGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAAGCCG
* * * *
69798182 ATGCCATGTCCCAGACATGGTCTTGCACTAGCTCTCGT-TACATTA-CCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT-CA-AAGCCG
*
69798230 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATC
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC
69798271 GTGTTCGATT
Statistics
Matches: 185, Mismatches: 45, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
47 1 0.01
48 183 0.99
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAAGCCG
Found at i:69798154 original size:96 final size:95
Alignment explanation
Indices: 69797990--69798270 Score: 310
Period size: 96 Copynumber: 2.9 Consensus size: 95
69797980 TGAATTGCCA
* * * * * *
69797990 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACTTGTCGAGGCCGATGGCATATCCCATACA
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT-TCGTGGCCGATGCCATGTCCCAAACA
* *
69798055 TGGTCTTACACTAGCTCTCATCTTAAAGCCG
65 TGGTCTTACACTAGCTCTCATATCAAAGCCG
* * * * *
69798086 ATGCCATTTTCCAAACATGGTCTTACACTGGCTTTCATATCGTGGCCGATGTCATGTCCCAGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT-TCGTGGCCGATGCCATGTCCCAAACA
* * * *
69798151 TGGTCTTACATTAGCGCACATATCAATGCCG
65 TGGTCTTACACTAGCTCTCATATCAAAGCCG
* * * * * ** *
69798182 ATGCCATGTCCCAGACATGGTCTTGCACTAGCTCTCGTTACATTACCGATGCCATGTTCCAAACA
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATT-CGTGGCCGATGCCATGTCCCAAACA
69798247 TGGTCTTACACTAGCTCTCATATC
65 TGGTCTTACACTAGCTCTCATATC
69798271 GTGTTCGATT
Statistics
Matches: 152, Mismatches: 32, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
95 1 0.01
96 151 0.99
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (95 bp):
ATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATTCGTGGCCGATGCCATGTCCCAAACAT
GGTCTTACACTAGCTCTCATATCAAAGCCG
Found at i:69798254 original size:144 final size:143
Alignment explanation
Indices: 69797994--69798292 Score: 377
Period size: 144 Copynumber: 2.1 Consensus size: 143
69797984 TTGCCAATGC
* * * * * * * *
69797994 CATGTTCCAAACATGGTCTTACACTAGCTCACTTGTCGAGGCCGATGGCATATCCCATACATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATATCCCAGACATGGT
* * *
69798059 CTTACACTAGCTCTCATCTTAAAGCCGATGCCATTTTCCAAACATGGTCTTACACTGGCTTTCAT
66 CTTACACTAGCTCTCATCTT-AAGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCAT
69798124 ATCGTGGCCGATGT
130 ATCGTGGCCGATGT
* * *
69798138 CATGTCCCAGACATGGTCTTACATTAGCGCACATATCAATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATATCCCAGACATGGT
* *
69798203 CTTGCACTAGCTCTCGTTACATT-A-CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTC
66 CTTACACTAGCTCTC-AT-C-TTAAGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTC
** *
69798266 ATATCGTGTTCGATTT
128 ATATCGTGGCCGATGT
69798282 CATGTCCCAGA
1 CATGTCCCAGA
69798293 TTAATCTACT
Statistics
Matches: 133, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
144 128 0.96
145 2 0.02
146 1 0.01
147 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (143 bp):
CATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATATCCCAGACATGGT
CTTACACTAGCTCTCATCTTAAGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATA
TCGTGGCCGATGT
Found at i:69809061 original size:7 final size:7
Alignment explanation
Indices: 69809049--69809081 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
69809039 GATGGGGATC
69809049 GGTCAAT
1 GGTCAAT
69809056 GGTCAAT
1 GGTCAAT
69809063 GGTCAAT
1 GGTCAAT
69809070 GGTCAAT
1 GGTCAAT
69809077 GGTCA
1 GGTCA
69809082 CCTTTGCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (7 bp):
GGTCAAT
Found at i:69812767 original size:3 final size:3
Alignment explanation
Indices: 69812759--69812807 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
69812749 CTTAATAGGC
69812759 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
69812807 T
1 T
69812808 TGAATCAGAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:69814179 original size:31 final size:29
Alignment explanation
Indices: 69814110--69814183 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
69814100 ACAAAATAAT
**
69814110 AACATAAGTGACTAAAATGTAACATTTCA
1 AACATAAGTGACTAAAATGTAACATGGCA
*
69814139 AACATAAGTGACTAAAATGTAACCTGGGGCA
1 AACATAAGTGACTAAAATGTAACAT--GGCA
*
69814170 AACAAAAGTGACTA
1 AACATAAGTGACTA
69814184 TTTTTGTAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.47, C:0.15, G:0.16, T:0.22
Consensus pattern (29 bp):
AACATAAGTGACTAAAATGTAACATGGCA
Found at i:69818608 original size:19 final size:18
Alignment explanation
Indices: 69818575--69818610 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
69818565 GTATAAAATT
*
69818575 AATGAAAAGTTTAACCTG
1 AATGAAAACTTTAACCTG
69818593 AATGAGAAACTTTAACCT
1 AATGA-AAACTTTAACCT
69818611 TAGCTCATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (18 bp):
AATGAAAACTTTAACCTG
Found at i:69819422 original size:10 final size:10
Alignment explanation
Indices: 69819373--69819428 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
69819363 CCGTATATAT
69819373 AAAAAAA-TC
1 AAAAAAATTC
*
69819382 TAAAAAATTC
1 AAAAAAATTC
* **
69819392 AAAACAATGG
1 AAAAAAATTC
*
69819402 ATAAAATATTC
1 A-AAAAAATTC
69819413 AAAAAAATTC
1 AAAAAAATTC
69819423 AAAAAA
1 AAAAAA
69819429 TAAAAAAATC
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
9 6 0.17
10 23 0.66
11 6 0.17
ACGTcount: A:0.68, C:0.09, G:0.04, T:0.20
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:69819428 original size:21 final size:21
Alignment explanation
Indices: 69819373--69819430 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 21
69819363 CCGTATATAT
*
69819373 AAAAAAA-TCTAAAAA-ATTC
1 AAAAAAATTCAAAAAATATTC
* ** *
69819392 AAAACAATGGATAAAATATTC
1 AAAAAAATTCAAAAAATATTC
69819413 AAAAAAATTCAAAAAATA
1 AAAAAAATTCAAAAAATA
69819431 AAAAAATCTA
Statistics
Matches: 28, Mismatches: 9, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
19 6 0.21
20 4 0.14
21 18 0.64
ACGTcount: A:0.67, C:0.09, G:0.03, T:0.21
Consensus pattern (21 bp):
AAAAAAATTCAAAAAATATTC
Found at i:69824231 original size:7 final size:8
Alignment explanation
Indices: 69824207--69824234 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
69824197 ATTAGGATTG
69824207 AAATTAAA
1 AAATTAAA
69824215 AAATTAAA
1 AAATTAAA
69824223 AAATTAAA
1 AAATTAAA
69824231 AAAT
1 AAAT
69824235 ATAAGGACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
AAATTAAA
Found at i:69827329 original size:1 final size:1
Alignment explanation
Indices: 69827323--69827356 Score: 59
Period size: 1 Copynumber: 34.0 Consensus size: 1
69827313 ATATGAAACC
*
69827323 AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
69827357 GAGTCGCTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:69833955 original size:19 final size:19
Alignment explanation
Indices: 69833931--69833967 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
69833921 TTCTATATTA
*
69833931 TTATTATTATTATTGTTAC
1 TTATTATTATTACTGTTAC
69833950 TTATTATTATTACTGTTA
1 TTATTATTATTACTGTTA
69833968 TGTACATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (19 bp):
TTATTATTATTACTGTTAC
Found at i:69833999 original size:179 final size:183
Alignment explanation
Indices: 69833697--69834027 Score: 573
Period size: 179 Copynumber: 1.8 Consensus size: 183
69833687 TTTTTTAAAT
* *
69833697 TATTTTATTTTAATATTATTATATTATGTTTAGTTTTTTTTGAATTTCTATATTATTATTATTAT
1 TATTTTATTTTAATATCATTATATTATGTTTAG-CTTTTTTGAATTTCTATATTATTATTATTAT
*
69833762 TATTGTTACTTATTATTATTACTGTTAGTTACTTATTATTTATACTATACTTAATATTATTATTA
65 TATTGTTACTTATTATTATTACTGTTAGTTACATATTATTTATACTATACTTAATATTATTATTA
*
69833827 TTA-T-CA-TTATTATTATTATATTTACTATTATTATTTATAAATATTAGTGTA
130 TTATTACATTTACTATTATTATATTTACTATTATTATTTATAAATATTAGTGTA
69833878 TATTTTATTTTAATATCATTATATTATGTTTA-CTTTTTTGAATTTCTATATTATTATTATTATT
1 TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTTTGAATTTCTATATTATTATTATTATT
69833942 ATTGTTACTTATTATTATTACTGTTA-TGTACATATTATTTATACTATACTTAATATTATTATTA
66 ATTGTTACTTATTATTATTACTGTTAGT-TACATATTATTTATACTATACTTAATATTATTATTA
69834006 TTATTACATTTACTATTATTAT
130 TTATTACATTTACTATTATTAT
69834028 TTATAAATAT
Statistics
Matches: 142, Mismatches: 4, Indels: 7
0.93 0.03 0.05
Matches are distributed among these distances:
178 1 0.01
179 95 0.67
180 1 0.01
181 33 0.23
182 12 0.08
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (183 bp):
TATTTTATTTTAATATCATTATATTATGTTTAGCTTTTTTGAATTTCTATATTATTATTATTATT
ATTGTTACTTATTATTATTACTGTTAGTTACATATTATTTATACTATACTTAATATTATTATTAT
TATTACATTTACTATTATTATATTTACTATTATTATTTATAAATATTAGTGTA
Found at i:69834028 original size:3 final size:3
Alignment explanation
Indices: 69833747--69834011 Score: 108
Period size: 3 Copynumber: 86.7 Consensus size: 3
69833737 TGAATTTCTA
* * *
69833747 TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAGT TACT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TA-T TA-T
* * *
69833795 TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TAT CAT TAT TAT
1 TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
69833840 TAT TA- TATT TAC TAT TAT TATT TAT AAA TAT TAGT GTA- TAT T-T TAT
1 TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TA-T -TAT TAT TAT TAT
* *
69833886 T-T TAA TAT CAT TA- TAT TAT GT-T TACT T-T T-T TGAAT T-T CTA-
1 TAT TAT TAT TAT TAT TAT TAT -TAT TA-T TAT TAT T--AT TAT -TAT
* * * *
69833926 TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAT GTACA
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T
* *
69833974 TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT TAT TA
1 TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TA
69834012 CATTTACTAT
Statistics
Matches: 198, Mismatches: 33, Indels: 62
0.68 0.11 0.21
Matches are distributed among these distances:
2 24 0.12
3 141 0.71
4 29 0.15
5 4 0.02
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:69834206 original size:3 final size:3
Alignment explanation
Indices: 69834200--69834251 Score: 52
Period size: 3 Copynumber: 16.7 Consensus size: 3
69834190 CTATTATTGC
* *
69834200 TAT TAT TGT TAT TAT TAT TAT TAT TATT TAT TA- TATT TAT ATAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TA-T TAT -TAT TAT
69834247 TAT TA
1 TAT TA
69834252 ATAGGTACTT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 2 0.05
3 32 0.78
4 7 0.17
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:69834390 original size:22 final size:21
Alignment explanation
Indices: 69834356--69834418 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 21
69834346 TATCCCTATT
69834356 ATATTGTTAATACTAGTATATAC
1 ATATT-TT-ATACTAGTATATAC
* * *
69834379 ATTTTATTATACGAGTATATAT
1 ATATT-TTATACTAGTATATAC
69834401 ATATTTTATACATAGTAT
1 ATATTTTATAC-TAGTAT
69834419 TATTTTCATA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 6 0.18
22 21 0.64
23 6 0.18
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.48
Consensus pattern (21 bp):
ATATTTTATACTAGTATATAC
Found at i:69852095 original size:67 final size:69
Alignment explanation
Indices: 69851931--69852103 Score: 199
Period size: 70 Copynumber: 2.5 Consensus size: 69
69851921 CTTTCCAAGG
* ** *
69851931 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
69851996 TTTT
66 TTTT
* * * * *
69852000 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCATGCCGAGGTA-TTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-
69852063 TGTTTT
64 TGTTTT
** *
69852069 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
69852104 TTTAATTTTT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
67 31 0.35
68 8 0.09
69 15 0.17
70 35 0.39
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Found at i:69852395 original size:149 final size:148
Alignment explanation
Indices: 69852107--69852443 Score: 435
Period size: 149 Copynumber: 2.2 Consensus size: 148
69852097 TAAGCCTTTT
* * ** *
69852107 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTG-TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
69852172 TAATTTCAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAG
65 TAATTTCAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAG
*
69852237 GACACGCTGAGGTAATTTC
130 CACACGCTGAGGTAATTTC
* *
69852256 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* * * ** *
69852321 TATTTTCAATTTCTGTT-TT-CAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAG
65 TAATTTCAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAG
* *
69852384 TTCACATGCTGAGGTATTTTC
130 --CACACGCTGAGGTAATTTC
*
69852405 AATTTCTGTTTTTAAAAAAAATCAACTCATATTGCGAGA
1 AATTTCTG-TTTT---CAAAATCAACTCATATTGCGAGA
69852444 GGTGAGTTAA
Statistics
Matches: 163, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
147 39 0.24
148 11 0.07
149 88 0.54
150 4 0.02
152 17 0.10
153 4 0.02
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (148 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
AATTTCAATTTCTGTTGTTAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAGC
ACACGCTGAGGTAATTTC
Found at i:69852480 original size:77 final size:75
Alignment explanation
Indices: 69852121--69852460 Score: 443
Period size: 77 Copynumber: 4.5 Consensus size: 75
69852111 TTTGTTTTTC
* *
69852121 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
69852186 GTTGTTAAAAAA
66 GTT-TT-TAAAA
** * *
69852198 AAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
69852263 G-TTTT--CA
66 GTTTTTAAAA
* * ** * *
69852270 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
*
69852335 GTTTTCAAAA
66 GTTTTTAAAA
* * *
69852345 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGTTCACATGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTATTTTCAATTT
69852410 CTGTTTTTAAAA
64 CTGTTTTTAAAA
* *
69852422 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
69852461 ATTACACACT
Statistics
Matches: 233, Mismatches: 25, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
72 61 0.26
73 3 0.01
75 38 0.16
76 1 0.00
77 130 0.56
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCT
GTTTTTAAAA
Found at i:69853044 original size:73 final size:72
Alignment explanation
Indices: 69852860--69853112 Score: 400
Period size: 73 Copynumber: 3.5 Consensus size: 72
69852850 TTTGAAAGAA
*
69852860 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
69852925 TCAAAAT
66 TCAAAAT
*
69852932 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TT
69852997 TTCAAAAT
65 TTCAAAAT
* * *
69853005 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
*
69853070 TCAAAAAAA
66 TC--AAAAT
*
69853079 TCAACTCATATTGC-AAAAAGTGAGTTGAGCCTCA
1 TCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCA
69853113 GTTCACATGT
Statistics
Matches: 169, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
72 64 0.38
73 73 0.43
74 32 0.19
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (72 bp):
TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTT
TCAAAAT
Found at i:69854913 original size:21 final size:21
Alignment explanation
Indices: 69854887--69854927 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
69854877 TATTTTTAAA
69854887 TTATTAATATCATTAATATTG
1 TTATTAATATCATTAATATTG
* *
69854908 TTATTATTATCATTATTATT
1 TTATTAATATCATTAATATT
69854928 ATGTGTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (21 bp):
TTATTAATATCATTAATATTG
Found at i:69857375 original size:12 final size:12
Alignment explanation
Indices: 69857360--69857387 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
69857350 AAATCTTAAT
69857360 ATAAAAACTTTC
1 ATAAAAACTTTC
69857372 ATAAAAACTTTC
1 ATAAAAACTTTC
69857384 ATAA
1 ATAA
69857388 TATTTTTACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAAAAACTTTC
Found at i:69859311 original size:23 final size:23
Alignment explanation
Indices: 69859285--69859333 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
69859275 TAAAACATAT
*
69859285 AGATTTCACGTGAAATCTCTTTC
1 AGATTTCACGTGAAATCCCTTTC
*
69859308 AGATTTTACGTGAAATCCCTTTC
1 AGATTTCACGTGAAATCCCTTTC
69859331 AGA
1 AGA
69859334 AAAAAAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (23 bp):
AGATTTCACGTGAAATCCCTTTC
Found at i:69866665 original size:10 final size:10
Alignment explanation
Indices: 69866650--69866682 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
69866640 CTGACCTTAA
69866650 TCTGGTCTAG
1 TCTGGTCTAG
69866660 TCTGGTCTAG
1 TCTGGTCTAG
*
69866670 TCTAGTCTAG
1 TCTGGTCTAG
69866680 TCT
1 TCT
69866683 CCTTTGTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.12, C:0.21, G:0.24, T:0.42
Consensus pattern (10 bp):
TCTGGTCTAG
Found at i:69871711 original size:22 final size:22
Alignment explanation
Indices: 69871686--69871766 Score: 83
Period size: 22 Copynumber: 3.7 Consensus size: 22
69871676 ATGGAATTTT
*
69871686 CACTACGGTGCCTACTAATTCG
1 CACTACGGTGCCTATTAATTCG
* * *
69871708 CACTTCGGTGCC-ATTGATTCA
1 CACTACGGTGCCTATTAATTCG
** * *
69871729 CACTTTGGTGCCCATTAATTTG
1 CACTACGGTGCCTATTAATTCG
69871751 CACTACGGTGCCTATT
1 CACTACGGTGCCTATT
69871767 GCTCAAAGTT
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
21 17 0.36
22 30 0.64
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (22 bp):
CACTACGGTGCCTATTAATTCG
Found at i:69874136 original size:89 final size:87
Alignment explanation
Indices: 69873985--69874160 Score: 298
Period size: 89 Copynumber: 2.0 Consensus size: 87
69873975 ATATGATAAA
* *
69873985 TATAAAACTATACCAATACGTCAAAATTTATCAACTACGTAACCACCAACTCATAAATGAGTAAG
1 TATAAAACTATACCAATACCTCAAAATTTATCAACTACGTAACCACAAACTCATAAATGAGTAAG
*
69874050 CTTGTCAACATCATAAATATTTTC
66 CTTATC-A-ATCATAAATATTTTC
*
69874074 TATAAAACTATACCAATGCCTCAAAATTTATCAACTACGTAACCACAAACTCATAAATGAGTAAG
1 TATAAAACTATACCAATACCTCAAAATTTATCAACTACGTAACCACAAACTCATAAATGAGTAAG
69874139 CTTATCAATCATAAATATTTTC
66 CTTATCAATCATAAATATTTTC
69874161 ATTCCTAACA
Statistics
Matches: 83, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
87 15 0.18
88 1 0.01
89 67 0.81
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (87 bp):
TATAAAACTATACCAATACCTCAAAATTTATCAACTACGTAACCACAAACTCATAAATGAGTAAG
CTTATCAATCATAAATATTTTC
Found at i:69880469 original size:10 final size:10
Alignment explanation
Indices: 69880454--69880478 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
69880444 AGATATTATT
69880454 TTATTTTTAA
1 TTATTTTTAA
69880464 TTATTTTTAA
1 TTATTTTTAA
69880474 TTATT
1 TTATT
69880479 AAATTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTATTTTTAA
Found at i:69882152 original size:19 final size:19
Alignment explanation
Indices: 69882130--69882167 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
69882120 TACCAACCAA
69882130 CATTTCAAATTCATAATTT
1 CATTTCAAATTCATAATTT
69882149 CATTTCAAATTCATAATTT
1 CATTTCAAATTCATAATTT
69882168 AACATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (19 bp):
CATTTCAAATTCATAATTT
Found at i:69882720 original size:10 final size:10
Alignment explanation
Indices: 69882705--69882729 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
69882695 AGATATTATT
69882705 TTATTTTTAA
1 TTATTTTTAA
69882715 TTATTTTTAA
1 TTATTTTTAA
69882725 TTATT
1 TTATT
69882730 AAATTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTATTTTTAA
Found at i:69884402 original size:19 final size:19
Alignment explanation
Indices: 69884380--69884417 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
69884370 TACCAACCAA
69884380 CATTTCAAATTCATAATTT
1 CATTTCAAATTCATAATTT
69884399 CATTTCAAATTCATAATTT
1 CATTTCAAATTCATAATTT
69884418 AACATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (19 bp):
CATTTCAAATTCATAATTT
Found at i:69905374 original size:30 final size:31
Alignment explanation
Indices: 69905308--69905376 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
69905298 CAATTGAATC
* * *
69905308 AAATCAAAGTTTTATGTGTATATTTCAACTA
1 AAATCAAACTTTAATGTGTATATTGCAACTA
69905339 AAATCAAACTTTAATGTGTATAGTTGC-AC-A
1 AAATCAAACTTTAATGTGTATA-TTGCAACTA
69905369 AAATCAAA
1 AAATCAAA
69905377 GATTATGTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 9 0.26
31 22 0.65
32 3 0.09
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (31 bp):
AAATCAAACTTTAATGTGTATATTGCAACTA
Found at i:69911099 original size:20 final size:20
Alignment explanation
Indices: 69911070--69911111 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
69911060 ATTTAGTCAT
*
69911070 TTTTTATTTTTATTTTAATA
1 TTTTTATTTTTAATTTAATA
*
69911090 TTTTTGTTTTTAATTTAATA
1 TTTTTATTTTTAATTTAATA
69911110 TT
1 TT
69911112 ATATTCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTTTATTTTTAATTTAATA
Found at i:69917576 original size:17 final size:16
Alignment explanation
Indices: 69917556--69917592 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
69917546 AAAAATCAAG
69917556 TATTTTTAGAAATTTTT
1 TATTTTTA-AAATTTTT
69917573 TATTTTTTAAAATTTTT
1 TA-TTTTTAAAATTTTT
69917590 TAT
1 TAT
69917593 AACCTTACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.05
17 12 0.63
18 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
TATTTTTAAAATTTTT
Found at i:69918878 original size:3 final size:3
Alignment explanation
Indices: 69918870--69918929 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
69918860 CTTCATTTTC
*
69918870 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
69918918 TCT TCT TCT TCT
1 TCT TCT TCT TCT
69918930 ATTGTATAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:69923908 original size:2 final size:2
Alignment explanation
Indices: 69923901--69923928 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
69923891 GTTGAGAACC
69923901 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69923929 TACAATGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69924262 original size:17 final size:17
Alignment explanation
Indices: 69924237--69924274 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
69924227 TCATTATTTT
*
69924237 TTTTCTTTTTTTTTCAG
1 TTTTCTTTTATTTTCAG
*
69924254 TTTTGTTTTATTTTCAG
1 TTTTCTTTTATTTTCAG
69924271 TTTT
1 TTTT
69924275 TAGTTTTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.76
Consensus pattern (17 bp):
TTTTCTTTTATTTTCAG
Found at i:69924508 original size:19 final size:20
Alignment explanation
Indices: 69924469--69924509 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
69924459 TTAGTTTCAA
**
69924469 TTAATTTGAATTTTTTTAAT
1 TTAATTTGAATTTTTAAAAT
69924489 TTAATTT-AATTTTTAAAAT
1 TTAATTTGAATTTTTAAAAT
69924508 TT
1 TT
69924510 TGTATTGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TTAATTTGAATTTTTAAAAT
Found at i:69925591 original size:11 final size:10
Alignment explanation
Indices: 69925563--69925706 Score: 75
Period size: 10 Copynumber: 14.1 Consensus size: 10
69925553 ACAATAGAAG
*
69925563 TTATAAATTT
1 TTATAATTTT
69925573 TTATAATTTT
1 TTATAATTTT
69925583 TTATGAATTTT
1 TTAT-AATTTT
* *
69925594 ATAT-TTTTT
1 TTATAATTTT
*
69925603 TCTTTACATTTTT
1 T-TATA-A-TTTT
*
69925616 TTATACTTTT
1 TTATAATTTT
* *
69925626 CTTACAAATTT
1 -TTATAATTTT
* *
69925637 ATAAAATTTT
1 TTATAATTTT
69925647 TTATATATTTT
1 TTATA-ATTTT
69925658 TT-TATATTTCT
1 TTATA-ATTT-T
69925669 ATT-T-A-TTT
1 -TTATAATTTT
*
69925677 CTATAATTTT
1 TTATAATTTT
69925687 TTATAA-TTT
1 TTATAATTTT
69925696 TTATAATTTT
1 TTATAATTTT
69925706 T
1 T
69925707 AAAAAAAAAT
Statistics
Matches: 103, Mismatches: 18, Indels: 26
0.70 0.12 0.18
Matches are distributed among these distances:
7 1 0.01
8 2 0.02
9 16 0.16
10 49 0.48
11 24 0.23
12 6 0.06
13 5 0.05
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (10 bp):
TTATAATTTT
Found at i:69925704 original size:28 final size:28
Alignment explanation
Indices: 69925650--69925704 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
69925640 AAATTTTTTA
* *
69925650 TATATTTTTTTATATTTCTATTTATTTC
1 TATAATTTTTTATATTTCTATTAATTTC
*
69925678 TATAATTTTTTATAATTTTTA-TAATTT
1 TATAATTTTTTAT-ATTTCTATTAATTT
69925705 TTAAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (28 bp):
TATAATTTTTTATATTTCTATTAATTTC
Found at i:69927176 original size:24 final size:25
Alignment explanation
Indices: 69927149--69927204 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
69927139 CTTTTTTTAT
*
69927149 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
69927173 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
69927198 -AAATAAA
1 TAAATAAA
69927205 TAATAAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:69927190 original size:25 final size:23
Alignment explanation
Indices: 69927161--69927225 Score: 75
Period size: 19 Copynumber: 2.9 Consensus size: 23
69927151 AATAAAAAAC
*
69927161 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAAT-AAATACA
69927186 TTTAAAACATAAAAATAAATA-A
1 TTTAAAACATAAAAATAAATACA
69927208 --TAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAATAAATA
69927226 AATAATGGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 7 0.18
22 1 0.03
23 5 0.13
24 4 0.10
25 11 0.28
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:69932574 original size:21 final size:21
Alignment explanation
Indices: 69932512--69932574 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
69932502 GAGCTCTTTC
* *
69932512 TTTTATATT-AAAATATTTTT
1 TTTTTTATTAAAAATATTTTA
* *
69932532 TTTGTTTTTTAAAATAAAATTTTA
1 TTT-TTTATT-AAA-AATATTTTA
69932556 TTTTTTATTAAAAATATTT
1 TTTTTTATTAAAAATATTT
69932575 AAATTTATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
20 3 0.09
21 10 0.30
22 3 0.09
23 7 0.21
24 10 0.30
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTTTATTAAAAATATTTTA
Found at i:69933106 original size:25 final size:26
Alignment explanation
Indices: 69933078--69933126 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
69933068 TATAAATTTA
69933078 AATA-TTT-TTTATAAAAATAAAAAAT
1 AATATTTTATTTA-AAAAATAAAAAAT
69933103 AATATTTTATTTAAAAAATAAAAA
1 AATATTTTATTTAAAAAATAAAAA
69933127 TAGTTGCGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 4 0.18
26 14 0.64
27 4 0.18
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
AATATTTTATTTAAAAAATAAAAAAT
Done.