Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 213 of 253
Found at i:70257350 original size:78 final size:78
Alignment explanation
Indices: 70257264--70257427 Score: 190
Period size: 78 Copynumber: 2.1 Consensus size: 78
70257254 GAATTTAAAC
* * * * *
70257264 CCGG-TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGC
1 CCGGATATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGC
* *
70257326 CTGCGGACCTTAAGT
64 CTACGGACCCTAAGT
* * * *
70257341 CCGGATATAATTCCAGCACATAGCTTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
70257406 ACGGACCCTAAGT
66 ACGGACCCTAAGT
70257419 CCGGATATA
1 CCGGATATA
70257428 CATCACTGAA
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
77 8 0.11
78 65 0.89
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (78 bp):
CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
ACGGACCCTAAGT
Found at i:70257399 original size:39 final size:39
Alignment explanation
Indices: 70257302--70257427 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
70257292 GGACTTTAGC
* * * *
70257302 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
70257341 CCGGATATAATTCCAGCACATAGCTTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
70257380 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
70257419 CCGGATATA
1 CCGGATATA
70257428 CATCACTGAA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:70266133 original size:15 final size:16
Alignment explanation
Indices: 70266113--70266147 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
70266103 TGTTAAGTGG
*
70266113 CATCAACTT-TCATGT
1 CATCAACTTATCATAT
70266128 CATCAACTTATCATAT
1 CATCAACTTATCATAT
70266144 CATC
1 CATC
70266148 CATCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.31, C:0.29, G:0.03, T:0.37
Consensus pattern (16 bp):
CATCAACTTATCATAT
Found at i:70268883 original size:41 final size:41
Alignment explanation
Indices: 70268818--70268899 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
70268808 CCGCTCCAAC
* *
70268818 CTCTTTATAACCTCCCACAGATAAGTACCACAAGGCAAATG
1 CTCTTTATAAACTCCCACAAATAAGTACCACAAGGCAAATG
*
70268859 CTCTTTATAAACTCCCTCAAATAAGTACCACAAGGCAAATG
1 CTCTTTATAAACTCCCACAAATAAGTACCACAAGGCAAATG
70268900 GTCGAGCTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.38, C:0.28, G:0.11, T:0.23
Consensus pattern (41 bp):
CTCTTTATAAACTCCCACAAATAAGTACCACAAGGCAAATG
Found at i:70276977 original size:22 final size:23
Alignment explanation
Indices: 70276952--70276997 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
70276942 CAACCAAATC
70276952 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
70276974 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
70276997 A
1 A
70276998 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:70277003 original size:23 final size:23
Alignment explanation
Indices: 70276959--70277003 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
70276949 ATCAATTCAA
*
70276959 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
70276982 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
70277004 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:70284452 original size:16 final size:17
Alignment explanation
Indices: 70284431--70284462 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70284421 TTGAGCTCGG
70284431 TCGGATG-ACATTACTA
1 TCGGATGCACATTACTA
70284447 TCGGATGCACATTACT
1 TCGGATGCACATTACT
70284463 TAAGAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (17 bp):
TCGGATGCACATTACTA
Found at i:70284775 original size:22 final size:23
Alignment explanation
Indices: 70284750--70284795 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
70284740 CAACCAAATC
70284750 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
70284772 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
70284795 A
1 A
70284796 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:70284801 original size:23 final size:23
Alignment explanation
Indices: 70284757--70284801 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
70284747 ATCAATTCAA
*
70284757 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
70284780 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
70284802 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:70287985 original size:19 final size:20
Alignment explanation
Indices: 70287938--70287987 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
70287928 TAAACTATTT
*
70287938 CAACCCAAAT-GAGCTAAAT
1 CAACCCAAATGGAGCTAAAA
*
70287957 GAAGCCCAAATGGA-CTAAAA
1 CAA-CCCAAATGGAGCTAAAA
70287977 CAACCCAAATG
1 CAACCCAAATG
70287988 TCCATATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 10 0.38
20 14 0.54
21 2 0.08
ACGTcount: A:0.48, C:0.26, G:0.14, T:0.12
Consensus pattern (20 bp):
CAACCCAAATGGAGCTAAAA
Found at i:70291138 original size:23 final size:23
Alignment explanation
Indices: 70291108--70291214 Score: 105
Period size: 23 Copynumber: 4.7 Consensus size: 23
70291098 CCACAACTCG
*
70291108 TATGAGCTTACCGTTTTAGCTCT
1 TATGAGCTTACCGTTTCAGCTCT
70291131 TATGAGCTTACCG-TTCAGCTCT
1 TATGAGCTTACCGTTTCAGCTCT
**
70291153 TCGGAGCTTACCGTTTCAG-TCCT
1 TATGAGCTTACCGTTTCAGCT-CT
* *
70291176 TAAG-GACTTACCATTTCAGCTC-
1 TATGAG-CTTACCGTTTCAGCTCT
*
70291198 TACGGAGCTTACCGTTT
1 TA-TGAGCTTACCGTTT
70291215 ATCGGCTCAA
Statistics
Matches: 70, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
22 23 0.33
23 45 0.64
24 2 0.03
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (23 bp):
TATGAGCTTACCGTTTCAGCTCT
Found at i:70291153 original size:22 final size:22
Alignment explanation
Indices: 70291108--70291167 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
70291098 CCACAACTCG
*
70291108 TATGAGCTTACCGTTTTAGCTCT
1 TATGAGCTTACCG-TTCAGCTCT
70291131 TATGAGCTTACCGTTCAGCTCT
1 TATGAGCTTACCGTTCAGCTCT
**
70291153 TCGGAGCTTACCGTT
1 TATGAGCTTACCGTT
70291168 TCAGTCCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 21 0.62
23 13 0.38
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (22 bp):
TATGAGCTTACCGTTCAGCTCT
Found at i:70291209 original size:46 final size:45
Alignment explanation
Indices: 70291111--70291214 Score: 131
Period size: 46 Copynumber: 2.3 Consensus size: 45
70291101 CAACTCGTAT
* * *
70291111 GAGCTTACCGTTTTAGCTCTTATGAGCTTACCGTTCAGCTCTTCG
1 GAGCTTACCGTTTCAGCTCTTAGGAGCTTACCGTTCAGCTCTACG
*
70291156 GAGCTTACCGTTTCAG-TCCTTAAGGA-CTTACCATTTCAGCTCTACG
1 GAGCTTACCGTTTCAGCT-CTT-AGGAGCTTACC-GTTCAGCTCTACG
70291202 GAGCTTACCGTTT
1 GAGCTTACCGTTT
70291215 ATCGGCTCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
44 1 0.02
45 24 0.46
46 27 0.52
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.36
Consensus pattern (45 bp):
GAGCTTACCGTTTCAGCTCTTAGGAGCTTACCGTTCAGCTCTACG
Found at i:70294869 original size:12 final size:12
Alignment explanation
Indices: 70294852--70294876 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70294842 GTTCAAAGTG
70294852 AAAATTAAATTA
1 AAAATTAAATTA
70294864 AAAATTAAATTA
1 AAAATTAAATTA
70294876 A
1 A
70294877 TTGGTCATCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATTAAATTA
Found at i:70299953 original size:23 final size:25
Alignment explanation
Indices: 70299909--70299956 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
70299899 AACAAAATAG
70299909 AAAGAAAGAAAGACGTAGAAAAAATGT
1 AAAGAAAGAAAGAC--AGAAAAAATGT
70299936 AAAGAAAGAAAGA-A-AAAAAAT
1 AAAGAAAGAAAGACAGAAAAAAT
70299957 AAAAGATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 7 0.33
24 1 0.05
27 13 0.62
ACGTcount: A:0.71, C:0.02, G:0.19, T:0.08
Consensus pattern (25 bp):
AAAGAAAGAAAGACAGAAAAAATGT
Found at i:70300050 original size:21 final size:23
Alignment explanation
Indices: 70300020--70300067 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
70300010 AATTATTAGT
*
70300020 TTTTGAAAAATATAT-TTTTATA
1 TTTTGAAAAATATATATTTAATA
*
70300042 TTTT-AAAAATATGTATTTAATA
1 TTTTGAAAAATATATATTTAATA
70300064 TTTT
1 TTTT
70300068 TTCATTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTTGAAAAATATATATTTAATA
Found at i:70300126 original size:17 final size:17
Alignment explanation
Indices: 70300079--70300142 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
70300069 TCATTAATAT
70300079 TTTTTTTGA-AATTTTATA
1 TTTTTTT-ACAATTTT-TA
* *
70300097 TGTTTTT-CTATTTTTA
1 TTTTTTTACAATTTTTA
70300113 TTTTTTTACAATTTTT-
1 TTTTTTTACAATTTTTA
*
70300129 TTATTTTTAAAATT
1 TT-TTTTTACAATT
70300143 GTTTGCTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
16 10 0.26
17 22 0.58
18 6 0.16
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTTTTTACAATTTTTA
Found at i:70303831 original size:149 final size:151
Alignment explanation
Indices: 70303561--70303957 Score: 557
Period size: 149 Copynumber: 2.6 Consensus size: 151
70303551 ACCCATACCA
* * * *
70303561 TGCTTCTTTATTCACTGCTAATTCAACTTCCTGATATGTTAAAAGAAATAGAGAATGTAAGAAAA
1 TGCTTCTTTCTTCACTGCCAATTCAACTTCCTGATATGTTAAAAGAAATAGAGAAGGTAGGAAAA
* *
70303626 CAGAGGGAGAAGCAAAAGAGAATGAAAGAAGCATGGTATAGGTTTATGAGTTTTGGTTATAGCCA
66 CAGAGGGAGAAGAAAAAGAGAATGAAAGAAGCATGATATAGGTTTATGAGTTTTGGTTATAGCCA
70303691 ATG-A-TGGCTTTTGGCTTCC
131 ATGAATTGGCTTTTGGCTTCC
* * * *
70303710 TGCTTCTTTCTTCACTACCAATTCGACTTCCTGATATGTTAAAAGAAATGGATAAGGTAGGAAAA
1 TGCTTCTTTCTTCACTGCCAATTCAACTTCCTGATATGTTAAAAGAAATAGAGAAGGTAGGAAAA
* * * *
70303775 CAGAGGAAGAAGAAAAAGAGAATGAAAGAAGCATGATATGGGTTTATGGGTTTTGGTTATAGGCA
66 CAGAGGGAGAAGAAAAAGAGAATGAAAGAAGCATGATATAGGTTTATGAGTTTTGGTTATAGCCA
70303840 ATGATAGCTTTTGGCTTTTGGCTTCC
131 ATGA-A----TTGGCTTTTGGCTTCC
* * *
70303866 TACTTCTTTCTTCACTGCCAATTCAACTTCCTGATATGTTAAAAGAAATCGAGAAGTTAGGAAAA
1 TGCTTCTTTCTTCACTGCCAATTCAACTTCCTGATATGTTAAAAGAAATAGAGAAGGTAGGAAAA
*
70303931 CAGAGGGAGAA-ACAGAAGAGAATGAAA
66 CAGAGGGAGAAGA-AAAAGAGAATGAAA
70303958 AAAAAAGAAA
Statistics
Matches: 218, Mismatches: 22, Indels: 9
0.88 0.09 0.04
Matches are distributed among these distances:
149 119 0.55
151 1 0.00
155 1 0.00
156 97 0.44
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.29
Consensus pattern (151 bp):
TGCTTCTTTCTTCACTGCCAATTCAACTTCCTGATATGTTAAAAGAAATAGAGAAGGTAGGAAAA
CAGAGGGAGAAGAAAAAGAGAATGAAAGAAGCATGATATAGGTTTATGAGTTTTGGTTATAGCCA
ATGAATTGGCTTTTGGCTTCC
Found at i:70307102 original size:18 final size:17
Alignment explanation
Indices: 70307079--70307117 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
70307069 GATGTGAGTG
70307079 AAAAATAAAATTATACAA
1 AAAAATAAAATTATA-AA
* *
70307097 AAAAATATATTTATAAA
1 AAAAATAAAATTATAAA
70307114 AAAA
1 AAAA
70307118 TTTAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAAATAAAATTATAAA
Found at i:70308166 original size:34 final size:34
Alignment explanation
Indices: 70308118--70308187 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
70308108 AATTGTCAAT
70308118 TTAAAATGTTTGTTTTTCGTTAACTACATGTCTC
1 TTAAAATGTTTGTTTTTCGTTAACTACATGTCTC
* *
70308152 TTAACATGTTTGTTTTTTGTTAACTACATGTCTC
1 TTAAAATGTTTGTTTTTCGTTAACTACATGTCTC
70308186 TT
1 TT
70308188 CATGTGAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.14, G:0.11, T:0.53
Consensus pattern (34 bp):
TTAAAATGTTTGTTTTTCGTTAACTACATGTCTC
Found at i:70308298 original size:29 final size:29
Alignment explanation
Indices: 70308265--70308327 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
70308255 ACTAATATAC
*
70308265 CAAAAAAGGCCCA-TTTTTTTAAAAATTA
1 CAAAAAAGGCCCACTTTTGTTAAAAATTA
* * *
70308293 CAAAAATGGGCCACTTTTGTTGAAAATTA
1 CAAAAAAGGCCCACTTTTGTTAAAAATTA
70308322 CAAAAA
1 CAAAAA
70308328 TGAGCCGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 11 0.37
29 19 0.63
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.29
Consensus pattern (29 bp):
CAAAAAAGGCCCACTTTTGTTAAAAATTA
Found at i:70308648 original size:17 final size:17
Alignment explanation
Indices: 70308622--70308663 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
70308612 TCTCTTAATT
*
70308622 TTTTTTTCTAAATTCTA
1 TTTTTATCTAAATTCTA
70308639 TTTTTATCTAAATTCTA
1 TTTTTATCTAAATTCTA
70308656 TTTATTAT
1 TTT-TTAT
70308664 TATTGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTTATCTAAATTCTA
Found at i:70310880 original size:26 final size:26
Alignment explanation
Indices: 70310844--70310901 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
70310834 ATACGTATCG
*
70310844 ATTCCCAACCACTAGAAGTTACTGCT
1 ATTCCCAACCACTAGAAGTTACTGCC
*
70310870 ATTCCCAACCACTAGAAGTTGCTGCC
1 ATTCCCAACCACTAGAAGTTACTGCC
70310896 ATTCCC
1 ATTCCC
70310902 TAGTAAGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.34, G:0.12, T:0.26
Consensus pattern (26 bp):
ATTCCCAACCACTAGAAGTTACTGCC
Found at i:70316019 original size:7 final size:7
Alignment explanation
Indices: 70316009--70316038 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
70315999 CACATTTCAC
70316009 TATTATG
1 TATTATG
70316016 TATTATG
1 TATTATG
70316023 TATTATG
1 TATTATG
70316030 TATTTATG
1 TA-TTATG
70316038 T
1 T
70316039 CTTTTATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.73
8 6 0.27
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (7 bp):
TATTATG
Found at i:70319093 original size:22 final size:22
Alignment explanation
Indices: 70319046--70319117 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
70319036 AACACTTAAA
*
70319046 AATTAAATAAAACACTAAAACCCT
1 AATTTAAT-AAACACT-AAACCCT
* * *
70319070 AATTTAATTAAGACTAAACTCT
1 AATTTAATAAACACTAAACCCT
70319092 AATTTAATAAACACTAAACCCT
1 AATTTAATAAACACTAAACCCT
70319114 AATT
1 AATT
70319118 AAACAATTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
22 29 0.71
23 5 0.12
24 7 0.17
ACGTcount: A:0.51, C:0.18, G:0.01, T:0.29
Consensus pattern (22 bp):
AATTTAATAAACACTAAACCCT
Found at i:70325915 original size:26 final size:26
Alignment explanation
Indices: 70325886--70325967 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
70325876 TGGTACAAAT
70325886 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
70325912 TGATAATGGGTTAGGTAACTGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
70325938 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70325964 TGAT
1 TGAT
70325968 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.07, G:0.26, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70332867 original size:26 final size:26
Alignment explanation
Indices: 70332838--70332893 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
70332828 TGGTACAAAT
70332838 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
70332864 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70332890 TGAT
1 TGAT
70332894 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70336509 original size:61 final size:61
Alignment explanation
Indices: 70336441--70336605 Score: 163
Period size: 61 Copynumber: 2.7 Consensus size: 61
70336431 CTATATTTTT
* * *
70336441 AATTTTTAGAGTTAGGACTAAATTGATAGATTTTTATAAATGTTGAAGGCTAAATTTATTG
1 AATTTTTAGAATTAGGACTAAATTGATAGAATTTTATAAATATTGAAGGCTAAATTTATTG
** * * * * * * *
70336502 AATTTTTAGAATTAAAACCAAAATGACA-AATTTTGTAAATATTTAAGGTTAAATTTTTTG
1 AATTTTTAGAATTAGGACTAAATTGATAGAATTTTATAAATATTGAAGGCTAAATTTATTG
* * * *
70336562 AATTTTTTACATTTAGGATTAAATTGATAGAA-TATATAAATATT
1 AA-TTTTTAGAATTAGGACTAAATTGATAGAATTTTATAAATATT
70336606 AAAAGACTAA
Statistics
Matches: 80, Mismatches: 22, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
60 28 0.35
61 50 0.62
62 2 0.03
ACGTcount: A:0.41, C:0.04, G:0.13, T:0.43
Consensus pattern (61 bp):
AATTTTTAGAATTAGGACTAAATTGATAGAATTTTATAAATATTGAAGGCTAAATTTATTG
Found at i:70337124 original size:12 final size:13
Alignment explanation
Indices: 70337107--70337135 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
70337097 TGCTTTTAAG
70337107 TTATTTGATA-TA
1 TTATTTGATATTA
70337119 TTATTTGATATTA
1 TTATTTGATATTA
70337132 TTAT
1 TTAT
70337136 ATTTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (13 bp):
TTATTTGATATTA
Found at i:70338663 original size:15 final size:16
Alignment explanation
Indices: 70338637--70338667 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
70338627 CCCTCCAAAA
70338637 AATTTAAATTTTTTGT
1 AATTTAAATTTTTTGT
70338653 AATTT-AATTTTTTGT
1 AATTTAAATTTTTTGT
70338668 TGATATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
AATTTAAATTTTTTGT
Found at i:70338909 original size:55 final size:55
Alignment explanation
Indices: 70338772--70338910 Score: 215
Period size: 55 Copynumber: 2.5 Consensus size: 55
70338762 AAAAATAGAG
*
70338772 TGTTTATATGTTTAAATCGATTGTTATATCGGAATATTGATTCTTTTGAATCGAT
1 TGTTTATATGTTTAAATCGATTGTTATGTCGGAATATTGATTCTTTTGAATCGAT
* * * * * *
70338827 TATTTATACGTTTAAACCGATTATTATGTTGGAATATTGCTTCTTTTGAATCGAT
1 TGTTTATATGTTTAAATCGATTGTTATGTCGGAATATTGATTCTTTTGAATCGAT
70338882 TGTTTATATGTTTAAATCGATTGTTATGT
1 TGTTTATATGTTTAAATCGATTGTTATGT
70338911 AACACATCTA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 73 1.00
ACGTcount: A:0.27, C:0.08, G:0.16, T:0.50
Consensus pattern (55 bp):
TGTTTATATGTTTAAATCGATTGTTATGTCGGAATATTGATTCTTTTGAATCGAT
Found at i:70339727 original size:10 final size:9
Alignment explanation
Indices: 70339683--70339812 Score: 77
Period size: 9 Copynumber: 14.1 Consensus size: 9
70339673 GTGGCAAAAG
70339683 AATTATAAA
1 AATTATAAA
70339692 AA--ATAAA
1 AATTATAAA
*
70339699 AATAAATAAA
1 AAT-TATAAA
* *
70339709 AGTAATAAA
1 AATTATAAA
70339718 AATTATTAAA
1 AATTA-TAAA
**
70339728 TTTTAATAAA
1 AATT-ATAAA
70339738 AA-TATAAA
1 AATTATAAA
* *
70339746 AAATATTAA
1 AATTATAAA
*
70339755 AATGATATAA
1 AATTATA-AA
70339765 AATTATAAA
1 AATTATAAA
*
70339774 AATCATAAAA
1 AATTAT-AAA
*
70339784 AATTGTAAA
1 AATTATAAA
*
70339793 ATTTTATAAA
1 A-ATTATAAA
*
70339803 AAATATAAA
1 AATTATAAA
70339812 A
1 A
70339813 TGCATCAAAA
Statistics
Matches: 93, Mismatches: 19, Indels: 18
0.72 0.15 0.14
Matches are distributed among these distances:
7 7 0.08
8 7 0.08
9 39 0.42
10 39 0.42
11 1 0.01
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.31
Consensus pattern (9 bp):
AATTATAAA
Found at i:70339775 original size:19 final size:18
Alignment explanation
Indices: 70339694--70339803 Score: 71
Period size: 19 Copynumber: 5.9 Consensus size: 18
70339684 ATTATAAAAA
* *
70339694 ATAAAAATAAATAAAAGTA
1 ATAAAAATATATAAAA-TT
*
70339713 ATAAAAAT-TATTAAATTTT
1 ATAAAAATATA-TAAA-ATT
*
70339732 AATAAAAATATA-AAAAAT
1 -ATAAAAATATATAAAATT
*
70339750 ATTAAAATGATATAAAATT
1 ATAAAAAT-ATATAAAATT
*
70339769 ATAAAAATCATAAAAAATT
1 ATAAAAAT-ATATAAAATT
* * *
70339788 GTAAAATTTTATAAAA
1 ATAAAAATATATAAAA
70339804 AATATAAAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 13
0.72 0.14 0.13
Matches are distributed among these distances:
17 7 0.10
18 11 0.15
19 43 0.61
20 8 0.11
21 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAAAAATATATAAAATT
Found at i:70339784 original size:28 final size:26
Alignment explanation
Indices: 70339683--70339812 Score: 84
Period size: 28 Copynumber: 4.7 Consensus size: 26
70339673 GTGGCAAAAG
*
70339683 AATTATAAAAA-ATAAAAATAAATAA
1 AATTATAAAAATATAAAAATATATAA
* * * *
70339708 AAGTAATAAAAATTATTAAATTTTAATAA
1 AA-TTATAAAAA-TATAAAAATAT-ATAA
* *
70339737 AAATATAAAAAATATTAAAATGATATAA
1 AATTAT-AAAAATATAAAAAT-ATATAA
*
70339765 AATTATAAAAATCATAAAAA-ATTGTAA
1 AATTATAAAAAT-ATAAAAATA-TATAA
70339792 AATTTTATAAAAAATATAAAA
1 AA--TTAT-AAAAATATAAAA
70339813 TGCATCAAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
25 2 0.02
26 9 0.11
27 12 0.15
28 31 0.38
29 22 0.27
30 6 0.07
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.31
Consensus pattern (26 bp):
AATTATAAAAATATAAAAATATATAA
Found at i:70339811 original size:19 final size:19
Alignment explanation
Indices: 70339740--70339813 Score: 64
Period size: 19 Copynumber: 3.9 Consensus size: 19
70339730 TTAATAAAAA
70339740 TATAAAAAATATTAAAATGA-
1 TATAAAAAATA-TAAAAT-AT
*
70339760 TAT-AAAATTATAAAA-AT
1 TATAAAAAATATAAAATAT
* * *
70339777 CATAAAAAATTGTAAAATTT
1 TATAAAAAA-TATAAAATAT
70339797 TATAAAAAATATAAAAT
1 TATAAAAAATATAAAAT
70339814 GCATCAAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
16 1 0.02
17 2 0.05
18 9 0.21
19 19 0.44
20 12 0.28
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (19 bp):
TATAAAAAATATAAAATAT
Found at i:70340060 original size:10 final size:10
Alignment explanation
Indices: 70340047--70340151 Score: 62
Period size: 10 Copynumber: 10.7 Consensus size: 10
70340037 TTTCTTACGA
70340047 TTTATAATAT
1 TTTATAATAT
*
70340057 TTTATAATTT
1 TTTATAATAT
*
70340067 TTTCCT-ATAT
1 TTT-ATAATAT
*
70340077 TTCTA-CATAT
1 TT-TATAATAT
70340087 TTTATAAT-T
1 TTTATAATAT
*
70340096 TCTTATGAT-T
1 T-TTATAATAT
*
70340106 TTTATAAAAT
1 TTTATAATAT
70340116 TTTA-AATTAT
1 TTTATAA-TAT
70340126 TTTATAAT-T
1 TTTATAATAT
*
70340135 TCTTATGAT-T
1 T-TTATAATAT
70340145 TTTATAA
1 TTTATAA
70340152 CTTTTATGGA
Statistics
Matches: 75, Mismatches: 11, Indels: 19
0.71 0.10 0.18
Matches are distributed among these distances:
9 18 0.24
10 53 0.71
11 4 0.05
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (10 bp):
TTTATAATAT
Found at i:70340094 original size:57 final size:59
Alignment explanation
Indices: 70340013--70340128 Score: 157
Period size: 59 Copynumber: 2.0 Consensus size: 59
70340003 TTACGAATTT
* *
70340013 TATATTTCTTTACATTTTTTATAATTTCTTACGA-TTTATAATATTTTATAATT-TTTTCC
1 TATATTTC-TTACATATTTTATAATTTCTTACGATTTTATAAAATTTTA-AATTATTTTCC
*
70340072 TATATTTC-TACATATTTTATAATTTCTTATGATTTTTATAAAATTTTAAATTATTTT
1 TATATTTCTTACATATTTTATAATTTCTTACGA-TTTTATAAAATTTTAAATTATTTT
70340129 ATAATTTCTT
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
57 22 0.43
58 4 0.08
59 25 0.49
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (59 bp):
TATATTTCTTACATATTTTATAATTTCTTACGATTTTATAAAATTTTAAATTATTTTCC
Found at i:70340149 original size:19 final size:18
Alignment explanation
Indices: 70340086--70340168 Score: 78
Period size: 19 Copynumber: 4.3 Consensus size: 18
70340076 TTTCTACATA
70340086 TTTTATAATTTCTTATGAT
1 TTTTATAATTT-TTATGAT
* *
70340105 TTTTATAAAATTTTA-AATT
1 TTTTAT-AATTTTTATGA-T
70340124 ATTTTATAATTTCTTATGAT
1 -TTTTATAATTT-TTATGAT
*
70340144 TTTTATAACTTTTATGGAT
1 TTTTATAATTTTTAT-GAT
70340163 TTTTAT
1 TTTTAT
70340169 TTTTTTATCA
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
18 5 0.09
19 33 0.62
20 14 0.26
21 1 0.02
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (18 bp):
TTTTATAATTTTTATGAT
Found at i:70340156 original size:10 final size:9
Alignment explanation
Indices: 70340086--70340168 Score: 60
Period size: 10 Copynumber: 8.7 Consensus size: 9
70340076 TTTCTACATA
70340086 TTTTATAAT
1 TTTTATAAT
*
70340095 TTCTTATGAT
1 TT-TTATAAT
*
70340105 TTTTATAAAA
1 TTTTAT-AAT
70340115 TTTTA-AATT
1 TTTTATAA-T
70340124 ATTTTATAAT
1 -TTTTATAAT
*
70340134 TTCTTATGAT
1 TT-TTATAAT
*
70340144 TTTTATAAC
1 TTTTATAAT
*
70340153 TTTTATGGAT
1 TTTTAT-AAT
70340163 TTTTAT
1 TTTTAT
70340169 TTTTTTATCA
Statistics
Matches: 58, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
8 2 0.03
9 19 0.33
10 35 0.60
11 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:70349922 original size:79 final size:79
Alignment explanation
Indices: 70349791--70349952 Score: 297
Period size: 79 Copynumber: 2.1 Consensus size: 79
70349781 GGAACATTCT
* *
70349791 TGATAAATTTCAACAAGAACTGGTAACAAAGCTAAATGTTTTAACCTTCTTACTACTTCTTTTAT
1 TGATAAATTTCAACAAGAACTGGAAACAAAGCTAAATGTTTTAACCTGCTTACTACTTCTTTTAT
70349856 TAGTTTTTGATTAA
66 TAGTTTTTGATTAA
*
70349870 TGATAAATTTCAACAAGAATTGGAAACAAAGCTAAATGTTTTAACCTGCTTACTACTTCTTTTAT
1 TGATAAATTTCAACAAGAACTGGAAACAAAGCTAAATGTTTTAACCTGCTTACTACTTCTTTTAT
70349935 TAGTTTTTGATTAA
66 TAGTTTTTGATTAA
70349949 TGAT
1 TGAT
70349953 TAATGAATGA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (79 bp):
TGATAAATTTCAACAAGAACTGGAAACAAAGCTAAATGTTTTAACCTGCTTACTACTTCTTTTAT
TAGTTTTTGATTAA
Found at i:70354900 original size:20 final size:22
Alignment explanation
Indices: 70354855--70354901 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
70354845 TGTTCGTCTC
70354855 CTTTCTCCTTTTCTTTCCCTTT
1 CTTTCTCCTTTTCTTTCCCTTT
* *
70354877 -TTTC-CCTTTT-TTTTCTTTT
1 CTTTCTCCTTTTCTTTCCCTTT
70354896 CTTTCT
1 CTTTCT
70354902 TTCCTTTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
19 7 0.33
20 10 0.48
21 4 0.19
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (22 bp):
CTTTCTCCTTTTCTTTCCCTTT
Found at i:70355019 original size:39 final size:35
Alignment explanation
Indices: 70354974--70355066 Score: 91
Period size: 39 Copynumber: 2.5 Consensus size: 35
70354964 TTTACTTTAT
70354974 TATTATATTATATAATTTACTTAAATATTTATTAAAACA
1 TATTATA-TATATAATTTACTT-AA-ATTTATTAAAA-A
* * *
70355013 TATTATAATATATATTTTAACTTTAATTTATTAACAA
1 TATTAT-ATATATAATTT-ACTTAAATTTATTAAAAA
70355050 TA-TATATA-ATAATTTAC
1 TATTATATATATAATTTAC
70355067 ACTTGTGACG
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
33 2 0.04
34 6 0.12
35 3 0.06
36 3 0.06
37 3 0.06
38 10 0.21
39 16 0.33
40 5 0.10
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.49
Consensus pattern (35 bp):
TATTATATATATAATTTACTTAAATTTATTAAAAA
Found at i:70356624 original size:16 final size:17
Alignment explanation
Indices: 70356602--70356645 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
70356592 CATATCATAA
70356602 TCATTTCTCATATTTTC
1 TCATTTCTCATATTTTC
*
70356619 -CATTTC-AATATTTTC
1 TCATTTCTCATATTTTC
70356634 TCA--TCTCATATT
1 TCATTTCTCATATT
70356646 CGTTTCTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
14 2 0.09
15 13 0.57
16 8 0.35
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (17 bp):
TCATTTCTCATATTTTC
Found at i:70356643 original size:43 final size:43
Alignment explanation
Indices: 70356587--70356672 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
70356577 TCATATTTCG
*
70356587 TTTCTCATATCATAATCATTTCTCATATTTTCCATTTCAATAT
1 TTTCTCATATCATAATCATTTCTCATATTTGCCATTTCAATAT
* * * * *
70356630 TTTCTCATCTCATATTCGTTTCTCATCTTTGCCATTTTAATAT
1 TTTCTCATATCATAATCATTTCTCATATTTGCCATTTCAATAT
70356673 CAATCTTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.23, C:0.22, G:0.02, T:0.52
Consensus pattern (43 bp):
TTTCTCATATCATAATCATTTCTCATATTTGCCATTTCAATAT
Found at i:70357384 original size:19 final size:18
Alignment explanation
Indices: 70357342--70357384 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
70357332 TTAATATTAC
*
70357342 ATATTTCAACTTCACATT
1 ATATTTCAACTTCACACT
* *
70357360 AAATTTCAATTTTCACACT
1 ATATTTCAA-CTTCACACT
70357379 ATATTT
1 ATATTT
70357385 TGCTTATTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.47
Consensus pattern (18 bp):
ATATTTCAACTTCACACT
Found at i:70357787 original size:5 final size:5
Alignment explanation
Indices: 70357773--70357811 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
70357763 GCTTCTTCAC
* * *
70357773 CTTTT CTTTT TTTTT CTTTT CTTTT GTTTT GTTTT CTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTT
70357812 GTTTAATTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (5 bp):
CTTTT
Found at i:70357793 original size:15 final size:15
Alignment explanation
Indices: 70357773--70357815 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
70357763 GCTTCTTCAC
*
70357773 CTTTTCTTTTTTTTT
1 CTTTTCTTTTGTTTT
70357788 CTTTTCTTTTGTTTT
1 CTTTTCTTTTGTTTT
*
70357803 GTTTTC-TTTGTTT
1 CTTTTCTTTTGTTT
70357816 AATTTGCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 7 0.27
15 19 0.73
ACGTcount: A:0.00, C:0.12, G:0.07, T:0.81
Consensus pattern (15 bp):
CTTTTCTTTTGTTTT
Found at i:70371253 original size:28 final size:27
Alignment explanation
Indices: 70371172--70371253 Score: 78
Period size: 28 Copynumber: 3.0 Consensus size: 27
70371162 AAAAAGAAAC
*
70371172 AAAAGAAAATA-AATAAAACAGAAAACAA
1 AAAAGAAAAGATAATAAAA-AGAAAA-AA
* *
70371200 AAAAGACAAGGTAA-AAAGAAGAAAAAA
1 AAAAGAAAAGATAATAAA-AAGAAAAAA
*
70371227 AAAAGAAAAGAATAATAAAAAGGAAAA
1 AAAAGAAAAG-ATAATAAAAAGAAAAA
70371254 TTATGTGAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
27 11 0.25
28 27 0.61
29 6 0.14
ACGTcount: A:0.77, C:0.04, G:0.13, T:0.06
Consensus pattern (27 bp):
AAAAGAAAAGATAATAAAAAGAAAAAA
Found at i:70371438 original size:11 final size:11
Alignment explanation
Indices: 70371422--70371447 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
70371412 TTTAATAAGA
70371422 AATTGAATGAG
1 AATTGAATGAG
70371433 AATTGAATGAG
1 AATTGAATGAG
70371444 AATT
1 AATT
70371448 TTAAAGTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (11 bp):
AATTGAATGAG
Found at i:70371590 original size:71 final size:71
Alignment explanation
Indices: 70371485--70371641 Score: 185
Period size: 71 Copynumber: 2.2 Consensus size: 71
70371475 TAAAAGAAAT
* *
70371485 ATTTAATGAGTATTTTAAAATTGGTGACAAATTTTTAAGAGAAATATTTAAA-TAAAAAAATATT
1 ATTTAATGAGAATTTTAAAATTGGTGACAAATTTTTAA-A-AAATATTTAAAGGAAAAAAATATT
*
70371549 TAATG-GG
64 TAATGAGA
* * * *
70371556 ATTTAAATGAGAATTTTGAAGTTGGTGA-TAATTTTTAAAAAATATTTAAAGGAAACAAATATTT
1 ATTT-AATGAGAATTTTAAAATTGGTGACAAATTTTTAAAAAATATTTAAAGGAAAAAAATATTT
70371620 AATGAGA
65 AATGAGA
*
70371627 ATTTTAATAAGAATT
1 A-TTTAATGAGAATT
70371642 AAATGGAAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
69 11 0.15
70 16 0.22
71 24 0.32
72 23 0.31
ACGTcount: A:0.46, C:0.01, G:0.14, T:0.38
Consensus pattern (71 bp):
ATTTAATGAGAATTTTAAAATTGGTGACAAATTTTTAAAAAATATTTAAAGGAAAAAAATATTTA
ATGAGA
Found at i:70372381 original size:16 final size:15
Alignment explanation
Indices: 70372341--70372391 Score: 66
Period size: 16 Copynumber: 3.3 Consensus size: 15
70372331 GGTCCTTTTG
70372341 GATTCAGATTTTTCA
1 GATTCAGATTTTTCA
* *
70372356 TATTCGGATTTTCTCA
1 GATTCAGATTTT-TCA
70372372 GATTCAGATTGTTTCA
1 GATTCAGATT-TTTCA
70372388 GATT
1 GATT
70372392 GGGTGAGCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 10 0.33
16 18 0.60
17 2 0.07
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.47
Consensus pattern (15 bp):
GATTCAGATTTTTCA
Found at i:70373472 original size:55 final size:55
Alignment explanation
Indices: 70373383--70373489 Score: 171
Period size: 55 Copynumber: 1.9 Consensus size: 55
70373373 TCATGCCTAC
* *
70373383 TCAAGAGGGGAATGTAGGCAAAACGAAACGAAATGGATGTTTTTGTAGAGATGTG
1 TCAAGAGGGGAATGTAGGCAAAACGAAACAAAATGGATGCTTTTGTAGAGATGTG
*
70373438 TCAAGAGGAGG-ATGTAGGCAAAATGAAACAAAATGGATGCTTTTGTAGAGAT
1 TCAAGAGG-GGAATGTAGGCAAAACGAAACAAAATGGATGCTTTTGTAGAGAT
70373490 ATGTGAGCAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
55 46 0.96
56 2 0.04
ACGTcount: A:0.38, C:0.07, G:0.31, T:0.23
Consensus pattern (55 bp):
TCAAGAGGGGAATGTAGGCAAAACGAAACAAAATGGATGCTTTTGTAGAGATGTG
Found at i:70375641 original size:16 final size:16
Alignment explanation
Indices: 70375608--70375641 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70375598 GAATGTTGTG
*
70375608 ATGGTGAAGAAAGCTA
1 ATGGTGAAGAAAGATA
*
70375624 ATGGTGAAGAAGGATA
1 ATGGTGAAGAAAGATA
70375640 AT
1 AT
70375642 TTTCTTTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.32, T:0.21
Consensus pattern (16 bp):
ATGGTGAAGAAAGATA
Found at i:70380508 original size:131 final size:130
Alignment explanation
Indices: 70380272--70380607 Score: 339
Period size: 131 Copynumber: 2.6 Consensus size: 130
70380262 CCCAGCTGAT
* * * * *
70380272 TCAAGATCATGAACAATTTTATTCGAGTTAGCTAATTTAACATTGCTACTTCGAACAACTTGCTG
1 TCAAGATCATGAA-AATTTTATTTGAGTTAGTTGATTTAAGATCGCTACTTCGAACAACTTGCTG
* * ** * *** *
70380337 ATTTAAGATCGTAGCTAATATTATTATGGTTTGCTGATTCAAGATCGTAACCCAAGTTCATTCGA
65 ATTTAAGATCGTAGATAATATTACTAAAGTTCGAACATTCAAGATCGCAACCCAAGTTCATTCGA
70380402 C
130 C
* * * *
70380403 TCAAGATCATGAAAATTTTTATTTAAGTTAGTTGATTTAAGATCGCTACTTTGAATATCTTGCTG
1 TCAAGATCATGAAAA-TTTTATTTGAGTTAGTTGATTTAAGATCGCTACTTCGAACAACTTGCTG
* * * * * *
70380468 ATTTAATATCGTAGATGATATTACTAAAGTTCGAACATTCAGGATTGCAACCTAAGTTCATTTGA
65 ATTTAAGATCGTAGATAATATTACTAAAGTTCGAACATTCAAGATCGCAACCCAAGTTCATTCGA
*
70380533 T
130 C
* * * * * * * * *
70380534 TCAAAATTATAAACAATTTTATTTGAGTTAGTTGGTTTAAGATCACTTCTCCAAACAACTTACTG
1 TCAAGATCATGAA-AATTTTATTTGAGTTAGTTGATTTAAGATCGCTACTTCGAACAACTTGCTG
70380599 ATTTAAGAT
65 ATTTAAGAT
70380608 TGCAACTCAT
Statistics
Matches: 164, Mismatches: 39, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
130 2 0.01
131 160 0.98
132 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (130 bp):
TCAAGATCATGAAAATTTTATTTGAGTTAGTTGATTTAAGATCGCTACTTCGAACAACTTGCTGA
TTTAAGATCGTAGATAATATTACTAAAGTTCGAACATTCAAGATCGCAACCCAAGTTCATTCGAC
Found at i:70383767 original size:16 final size:16
Alignment explanation
Indices: 70383746--70383789 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
70383736 CACGATTTTA
*
70383746 TTTCTGTATAAGTAAG
1 TTTCTGTATAACTAAG
*
70383762 TTTCTGTCATGACTAAG
1 TTTCTGT-ATAACTAAG
*
70383779 TTTCTATATAA
1 TTTCTGTATAA
70383790 AGGGCTAGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (16 bp):
TTTCTGTATAACTAAG
Found at i:70388192 original size:17 final size:18
Alignment explanation
Indices: 70388172--70388213 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
70388162 TGAGGTAAAA
70388172 TCTTCTATCATTTT-CTT
1 TCTTCTATCATTTTCCTT
* *
70388189 TCTTTTATCTTTTTCCTT
1 TCTTCTATCATTTTCCTT
70388207 TCCTTCT
1 T-CTTCT
70388214 TTATCAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 12 0.60
18 4 0.20
19 4 0.20
ACGTcount: A:0.07, C:0.26, G:0.00, T:0.67
Consensus pattern (18 bp):
TCTTCTATCATTTTCCTT
Found at i:70391028 original size:71 final size:70
Alignment explanation
Indices: 70390819--70391028 Score: 190
Period size: 71 Copynumber: 3.0 Consensus size: 70
70390809 TGGAAGTTGT
* ** * * * *
70390819 GTATGAAACCTATGAGCCTTAAGCTATTCAACTGGGAGCGTAGGCTCGCGATAACTATTTTCA-A
1 GTATTAAACCTACAAGCCTTAAGATATTTAGCT-GGAGCGTAGGCTCGCGCTAACTATTTT-AGA
* *
70390883 GGCTACG
64 GGCCAAG
* * * * * * *
70390890 GTATTGAACCTGCAAGCCTTAAAATATTTAGGTGGAAGCGTAGGTTTGCACTAACTATTTT-GAA
1 GTATTAAACCTACAAGCCTTAAGATATTTAGCTGG-AGCGTAGGCTCGCGCTAACTATTTTAG-A
70390954 GGCCAAG
64 GGCCAAG
* * *
70390961 GTATTAAATCTACTAGCCTTAAGATATTTAGCTAGGAGCGTAGGCTCGTGCTAACTATTTTAGAG
1 GTATTAAACCTACAAGCCTTAAGATATTTAGCT-GGAGCGTAGGCTCGCGCTAACTATTTTAGAG
70391026 GCC
65 GCC
70391029 GTGATATTGA
Statistics
Matches: 108, Mismatches: 26, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
70 2 0.02
71 103 0.95
72 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (70 bp):
GTATTAAACCTACAAGCCTTAAGATATTTAGCTGGAGCGTAGGCTCGCGCTAACTATTTTAGAGG
CCAAG
Found at i:70391050 original size:71 final size:68
Alignment explanation
Indices: 70390825--70391055 Score: 189
Period size: 71 Copynumber: 3.3 Consensus size: 68
70390815 TTGTGTATGA
* * * *
70390825 AACCTATGAGCCTTAAGCTATTCAACTGGGAGCGTAGGCTCGCGATAACTATTTTCA-AGGCTAC
1 AACCTATGAGCCTTAAGATATTTAGCT-GGAGCGTAGGCTCGCGCTAACTATTTT-AGAGGC--C
70390889 GGTATTG
62 GGTATTG
*** * * * * *
70390896 AACCTGCAAGCCTTAAAATATTTAGGTGGAAGCGTAGGTTTGCACTAACTATTTT-GAAGGCCAA
1 AACCTATGAGCCTTAAGATATTTAGCTGG-AGCGTAGGCTCGCGCTAACTATTTTAG-AGGCC--
*
70390960 GGTATTA
62 GGTATTG
* *
70390967 AATCTACT-AGCCTTAAGATATTTAGCTAGGAGCGTAGGCTCGTGCTAACTATTTTAGAGGCCGT
1 AACCTA-TGAGCCTTAAGATATTTAGCT-GGAGCGTAGGCTCGCGCTAACTATTTTAGAGGCCG-
70391031 GATATTG
63 G-TATTG
*
70391038 AACCTTTGAGCCTTAAGA
1 AACCTATGAGCCTTAAGA
70391056 GATTCCCAAG
Statistics
Matches: 124, Mismatches: 25, Indels: 22
0.73 0.15 0.13
Matches are distributed among these distances:
69 2 0.02
70 4 0.03
71 115 0.93
72 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (68 bp):
AACCTATGAGCCTTAAGATATTTAGCTGGAGCGTAGGCTCGCGCTAACTATTTTAGAGGCCGGTA
TTG
Found at i:70396961 original size:15 final size:15
Alignment explanation
Indices: 70396941--70396973 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
70396931 TGGGCCTGGA
*
70396941 TGTACGGGAGGAACT
1 TGTACGAGAGGAACT
70396956 TGTACGAGAGGAACT
1 TGTACGAGAGGAACT
70396971 TGT
1 TGT
70396974 GTGCTCGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.36, T:0.24
Consensus pattern (15 bp):
TGTACGAGAGGAACT
Found at i:70400537 original size:16 final size:16
Alignment explanation
Indices: 70400501--70400532 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
70400491 AATATTTTTG
70400501 ATAAATGTTATATATT
1 ATAAATGTTATATATT
70400517 ATAAAT-TT-TATATT
1 ATAAATGTTATATATT
70400531 AT
1 AT
70400533 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
ATAAATGTTATATATT
Found at i:70405003 original size:20 final size:20
Alignment explanation
Indices: 70404978--70405018 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
70404968 AACTTATTTC
70404978 ATTAAAAATAAAAGAAATAA
1 ATTAAAAATAAAAGAAATAA
*
70404998 ATTAAAAATAAAGGAAATAA
1 ATTAAAAATAAAAGAAATAA
70405018 A
1 A
70405019 AGGAAAACAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (20 bp):
ATTAAAAATAAAAGAAATAA
Found at i:70405025 original size:20 final size:20
Alignment explanation
Indices: 70404981--70405025 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
70404971 TTATTTCATT
**
70404981 AAAAATAAAAGAAATAAATT
1 AAAAATAAAAGAAATAAAAG
*
70405001 AAAAATAAAGGAAATAAAAGG
1 AAAAATAAAAGAAATAAAA-G
70405022 AAAA
1 AAAA
70405026 CAGAATCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (20 bp):
AAAAATAAAAGAAATAAAAG
Found at i:70406670 original size:3 final size:3
Alignment explanation
Indices: 70406662--70406699 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
70406652 AGTAAAACTT
70406662 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
70406700 TGATATACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:70410065 original size:10 final size:10
Alignment explanation
Indices: 70410052--70410076 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
70410042 TAAAACATAT
70410052 TAAAAGGTAA
1 TAAAAGGTAA
70410062 TAAAAGGTAA
1 TAAAAGGTAA
70410072 TAAAA
1 TAAAA
70410077 TAAATTAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (10 bp):
TAAAAGGTAA
Found at i:70411063 original size:33 final size:33
Alignment explanation
Indices: 70411026--70411101 Score: 125
Period size: 33 Copynumber: 2.3 Consensus size: 33
70411016 TACCCTCTGT
70411026 TTGGTGTGTTGGTTAGATTAGCTCTTATAAGCA
1 TTGGTGTGTTGGTTAGATTAGCTCTTATAAGCA
* * *
70411059 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCG
1 TTGGTGTGTTGGTTAGATTAGCTCTTATAAGCA
70411092 TTGGTGTGTT
1 TTGGTGTGTT
70411102 AAAGGGATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.14, C:0.08, G:0.33, T:0.45
Consensus pattern (33 bp):
TTGGTGTGTTGGTTAGATTAGCTCTTATAAGCA
Found at i:70411110 original size:33 final size:33
Alignment explanation
Indices: 70411041--70411110 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
70411031 GTGTTGGTTA
****
70411041 GATTAGCTCTTATAAGCATTGGTGTGTTGGTTG
1 GATTAGCTCTTATAAGCATTGGTGTGTTAAAGG
* *
70411074 GATTAGCTCTTATGAGCGTTGGTGTGTTAAAGG
1 GATTAGCTCTTATAAGCATTGGTGTGTTAAAGG
70411107 GATT
1 GATT
70411111 TTCTCGTGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.20, C:0.09, G:0.31, T:0.40
Consensus pattern (33 bp):
GATTAGCTCTTATAAGCATTGGTGTGTTAAAGG
Found at i:70418571 original size:698 final size:698
Alignment explanation
Indices: 70417235--70418619 Score: 2538
Period size: 698 Copynumber: 2.0 Consensus size: 698
70417225 CAAATTCACG
* *
70417235 TCGTTATTGCTGTCCGATACTGTTTTAAAGCTAATTTCACTTTTTTCATGATTTCCATGGAATAA
1 TCGTTATTGCTGTCCGATACTGTTTTAAAGCTAATTTCACCTTTTTCATGATTCCCATGGAATAA
* * *
70417300 CTAGCATTTAGGCATACATAACACCAAACATGTCCTTGATTAGCCATTCCAATAGCTAATCATTA
66 CTAACATTTAGGCATACATAACACCAAACATGTCCTTGATTAGCCATTCCAACAACTAATCATTA
*
70417365 TCAAGCATTTACATACCATTCATCAGCCATATCATAAGATCATACACACAAAATGGCATGATGCT
131 TCAAGCATTTACATACCATTCATCAGCCATATCATAAGATCATACACACAAAATGGCACGATGCT
* * *
70417430 ATACATGCCATACTCAAAATGAAACATCTAGCTATACCAAAATAATGCTCGTGATAGTGTGGCCG
196 ATACATGCCATACTCAAAATGAAACATCTAGCTATACCAAAATAATCCTCGTGATAGTGTGCCCA
*
70417495 GACCTCCGACGTACTTTACGATCCCCGAGTTAGCTTGACAAAACTATAAAAAGAAGGAAAATAAA
261 GACCTCCGACGTACTTTACGATCCCCGAGTTAGCTTGAAAAAACTATAAAAAGAAGGAAAATAAA
70417560 GGGGGTAAGCATTAAGCTTAGTAAGTTTGCATGCAAATAAATAACAACATTCATAAGAATTATCT
326 GGGGGTAAGCATTAAGCTTAGTAAGTTTGCATGCAAATAAATAACAACATTCATAAGAATTATCT
70417625 TACTACTTGGCATGATACTACTTAATGCAACTTCATTAATTGTCATAGACATATTTTAAACTTCT
391 TACTACTTGGCATGATACTACTTAATGCAACTTCATTAATTGTCATAGACATATTTTAAACTTCT
70417690 TCACTTACTCAGTTACTTAAATACTTACTTACTTAATCAAATTTATTAATACATTTTACTTACCT
456 TCACTTACTCAGTTACTTAAATACTTACTTACTTAATCAAATTTATTAATACATTTTACTTACCT
*
70417755 TTTTTCCTTATCAAGCATACATGAACATTATGTACTTACCTTTGCTTTTCTAGCATGAACTTGTC
521 TTTTTCCTTATCAAGCATACATGAACATTATGTACTTACCTTTGCTCTTCTAGCATGAACTTGTC
* * *
70417820 TTACCTTTTTAGTATAACTCGTCTTACCTTACCTTAGCTTGATATTCTCTTTAAAATTTCCCGTT
586 TTACCTTTTTAGTATAACTCATCTTACCTTACCTTACCTTGATATTCTCTTTAAAATTTCCCATT
70417885 GAACCACTTGGAATACTAAGGATACACGGGTACCTTAGCTTGATATTC
651 GAACCACTTGGAATACTAAGGATACACGGGTACCTTAGCTTGATATTC
* * *
70417933 TCGTTATTGTTGTCCGATAGTGTTTTAAAGCTAATTTCACCTTTTTCGTGATTCCCATGGAATAA
1 TCGTTATTGCTGTCCGATACTGTTTTAAAGCTAATTTCACCTTTTTCATGATTCCCATGGAATAA
70417998 CTAACATTTAGGCATACATAACACCAAACATGTCCTTGATTAGCCATTCCAACAACTAATCATTA
66 CTAACATTTAGGCATACATAACACCAAACATGTCCTTGATTAGCCATTCCAACAACTAATCATTA
*
70418063 TCAGGCATTTACATACCATTCATCAGCCATATCATAAGATCATACACACAAAATGGCTACGATGC
131 TCAAGCATTTACATACCATTCATCAGCCATATCATAAGATCATACACACAAAATGGC-ACGATGC
*
70418128 TATACATGCCATACTCAAAATGAAACGTCTAGCTATACCAAAATAATCCTCGTGATAGTGTGCCC
195 TATACATGCCATACTCAAAATGAAACATCTAGCTATACCAAAATAATCCTCGTGATAGTGTGCCC
*
70418193 AGACCTCCGACGTACTTTATGATCCCCGAGTTAGCTTGAAAAAACTATAAAAAGAAGGAAAATAA
260 AGACCTCCGACGTACTTTACGATCCCCGAGTTAGCTTGAAAAAACTATAAAAAGAAGGAAAATAA
*
70418258 AGGGGGTAAGCATTAAGCTTAGTAAGTTTGCATGCAAATAAATAACAACATTCATAATAATTATC
325 AGGGGGTAAGCATTAAGCTTAGTAAGTTTGCATGCAAATAAATAACAACATTCATAAGAATTATC
70418323 TTACTACTTGGCATGATACTACTTAATGCAACTTCATTAATTGTCATAGACATATTTTAAACTTC
390 TTACTACTTGGCATGATACTACTTAATGCAACTTCATTAATTGTCATAGACATATTTTAAACTTC
70418388 TTCACTTACTCAGTTACTTAAATACTTACTTACTTAATCAAATTTATTAATACATTTTACTTACC
455 TTCACTTACTCAGTTACTTAAATACTTACTTACTTAATCAAATTTATTAATACATTTTACTTACC
*
70418453 -TTTTTCCTTATCAAGCATACATGAACATTATGTACTTACCTTTGCTCTTCTAGCATGAATTTGT
520 TTTTTTCCTTATCAAGCATACATGAACATTATGTACTTACCTTTGCTCTTCTAGCATGAACTTGT
70418517 CTTACCTTTTTAGTATAACTCATCTTACCTTACCTTACCTTGATATTCTCTTTAAAATTTCCCAT
585 CTTACCTTTTTAGTATAACTCATCTTACCTTACCTTACCTTGATATTCTCTTTAAAATTTCCCAT
* *
70418582 TGAACCATTTGGAATACTAAGGATACGCGGGTACCTTA
650 TGAACCACTTGGAATACTAAGGATACACGGGTACCTTA
70418620 CCATTGCCAT
Statistics
Matches: 662, Mismatches: 24, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
698 338 0.51
699 324 0.49
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (698 bp):
TCGTTATTGCTGTCCGATACTGTTTTAAAGCTAATTTCACCTTTTTCATGATTCCCATGGAATAA
CTAACATTTAGGCATACATAACACCAAACATGTCCTTGATTAGCCATTCCAACAACTAATCATTA
TCAAGCATTTACATACCATTCATCAGCCATATCATAAGATCATACACACAAAATGGCACGATGCT
ATACATGCCATACTCAAAATGAAACATCTAGCTATACCAAAATAATCCTCGTGATAGTGTGCCCA
GACCTCCGACGTACTTTACGATCCCCGAGTTAGCTTGAAAAAACTATAAAAAGAAGGAAAATAAA
GGGGGTAAGCATTAAGCTTAGTAAGTTTGCATGCAAATAAATAACAACATTCATAAGAATTATCT
TACTACTTGGCATGATACTACTTAATGCAACTTCATTAATTGTCATAGACATATTTTAAACTTCT
TCACTTACTCAGTTACTTAAATACTTACTTACTTAATCAAATTTATTAATACATTTTACTTACCT
TTTTTCCTTATCAAGCATACATGAACATTATGTACTTACCTTTGCTCTTCTAGCATGAACTTGTC
TTACCTTTTTAGTATAACTCATCTTACCTTACCTTACCTTGATATTCTCTTTAAAATTTCCCATT
GAACCACTTGGAATACTAAGGATACACGGGTACCTTAGCTTGATATTC
Found at i:70418806 original size:55 final size:53
Alignment explanation
Indices: 70418616--70418870 Score: 229
Period size: 55 Copynumber: 4.8 Consensus size: 53
70418606 ACGCGGGTAC
* * * * *
70418616 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
70418665 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
70418718 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTCTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCT-TGCCTTAT-G-AA
* ***
70418773 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GATA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGA-A
* * *
70418826 TCTTACCAATTTCCATGCCTTGGA-ATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTT-GACATGGTCTTACATGGGATCCTT
70418871 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 20, Indels: 20
0.81 0.09 0.09
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 4 0.02
53 47 0.27
54 10 0.06
55 68 0.39
56 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:70418807 original size:108 final size:110
Alignment explanation
Indices: 70418663--70418863 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
70418653 ATCCTTTTGA
* *
70418663 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGA-A-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GATATCTCACCAA
*
70418726 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTCTGCCTTATAGT
65 TTGCCATGCCTTGGAATGGTCTTACATGGGACCTCTGCCTTATAGT
* * *
70418771 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGATATCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGATATCTCACCAAT
*
70418836 TTCCATGCCTTGGAATGGTCTTACATGG
66 TGCCATGCCTTGGAATGGTCTTACATGG
70418864 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 2 0.02
108 48 0.58
109 7 0.08
110 26 0.31
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGATATCTCACCAAT
TGCCATGCCTTGGAATGGTCTTACATGGGACCTCTGCCTTATAGT
Found at i:70419944 original size:19 final size:19
Alignment explanation
Indices: 70419922--70419964 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
70419912 ATAACCCAAG
*
70419922 CCCAATAGCTAAACATAGA
1 CCCAATAACTAAACATAGA
*
70419941 CCCAATAACTAAACCTAGA
1 CCCAATAACTAAACATAGA
70419960 CCCAA
1 CCCAA
70419965 ATTTACAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.47, C:0.33, G:0.07, T:0.14
Consensus pattern (19 bp):
CCCAATAACTAAACATAGA
Found at i:70422601 original size:131 final size:130
Alignment explanation
Indices: 70422359--70422952 Score: 577
Period size: 131 Copynumber: 4.5 Consensus size: 130
70422349 TTCGCAATTA
* * * *
70422359 TTTAAAACGAAGGCAATATTCGGTATTTGACAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTG
1 TTTAAAACGAAGGCAATATTCGGTGTTTGGCAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTG
** * * *
70422424 CAATTTCTCGTTTGCTCAAAGTAATCAAAGGTCCCTTCAAAATTTCACTCATGTCTTCTAAAAA-
65 CAATTTCTCGTTTGCTCAAAACAATCGAAGATCCCTTCAGAATTTCACTCATGT-TTCTAAAAAC
70422488 TCC
129 T-C
* * *
70422491 TTTAAAACGAAGGCAATACTT-GGTGTTTGACAATTCGAGAATCATGCCCTATCGTGCTGGGTTG
1 TTTAAAACGAAGGCAATA-TTCGGTGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTG
** * * * * ** * *
70422555 TGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAGGTTTTCACTTATGTTTATTAAAAAC
65 CAATTTCTCGTTTGCTCAAAACAATCGAAGATCCCTTCAGAATTTCACTCATGTTT-CTAAAAAC
70422620 -C
129 TC
* * * * * *
70422621 TTTCAAAATGAAGGCGATGTTCGATGTTTGGCAATCCGCGGAATCGTGGCCTATCGTGCTGGGTT
1 TTT-AAAACGAAGGCAATATTCGGTGTTTGGCAATTCG-GGAATCGTGCCCTATCGTGCTGGGTT
* * *
70422686 GCAATTTCTCGTTTGCTCAAAATAATCGAACG-TCCCTTTAGAATTTCACTCATGGTTCCTAAAA
64 GCAATTTCTCGTTTGCTCAAAACAATCGAA-GATCCCTTCAGAATTTCACTCAT-GTTTCTAAAA
70422750 ACTC
127 ACTC
* * * * * * * *
70422754 TTTGAAATGAAGGAAATATTCGATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTGGGTTAC
1 TTTAAAACGAAGGCAATATTCGGTGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGC
** * * * * **
70422819 GCTTTTTCATTTGTTCAAAACAATCGAAGATTCCTTCAGAATTTCACTCGCGTTTTCTAAAAACT
66 AATTTCTCGTTTGCTCAAAACAATCGAAGATCCCTTCAGAATTTCACTCATG-TTTCTAAAAACT
70422884 C
130 C
* * * * * *
70422885 TTTAAAACAAAGG-AATGTTAGGTGTTTGGCAATTCGGGGAGTAGCGCCCTATCGTGCTGGGTTG
1 TTTAAAACGAAGGCAATATTCGGTGTTTGGCAATTC-GGGAATCGTGCCCTATCGTGCTGGGTTG
70422949 CAAT
65 CAAT
70422953 CTCCCGTTGG
Statistics
Matches: 374, Mismatches: 76, Indels: 25
0.79 0.16 0.05
Matches are distributed among these distances:
130 27 0.07
131 205 0.55
132 133 0.36
133 9 0.02
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (130 bp):
TTTAAAACGAAGGCAATATTCGGTGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGC
AATTTCTCGTTTGCTCAAAACAATCGAAGATCCCTTCAGAATTTCACTCATGTTTCTAAAAACTC
Found at i:70422866 original size:263 final size:262
Alignment explanation
Indices: 70422397--70422952 Score: 672
Period size: 263 Copynumber: 2.1 Consensus size: 262
70422387 GACAATTCGT
* * * *
70422397 GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCAAAGGTCCCTTC
1 GGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCAAACGTCCCTTC
* * *
70422462 AAAATTTCACTCATGTCTTCTAAAAATCCTTTAAAACGAAGGCAATACTTGGTGTTTGACAATTC
66 AAAATTTCACTCATGTCTCCTAAAAATCCTTTAAAACGAAGGAAATACTTGATGTTTGACAATTC
** * *
70422527 GAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTT
131 GAGAATCATGCCCTATCGTGCTGGGTTACGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTT
* ** * * ** * *
70422592 TAGGTTTTCACTTATGTTTAT-TAAAAAC-CTTTCAAAATGAAGGCGATGTTCGATGTTTGGCAA
196 CAGAATTTCACTCACGTTT-TCTAAAAACTCTTT-AAAACAAAGG-AATGTTAGATGTTTGGCAA
70422655 TCCGC
258 TCCGC
* * *
70422660 GGAATCGTGGCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAACGTCCCTTT
1 GGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCAAACGTCCCTTC
* * * * *
70422725 AGAATTTCACTCATGGT-TCCTAAAAA-CTCTTTGAAATGAAGGAAATA-TTCGATGTTTGGCGA
66 AAAATTTCACTCAT-GTCTCCTAAAAATC-CTTTAAAACGAAGGAAATACTT-GATGTTTGACAA
* * * *
70422787 TTTGAGAATCGTGCCCTATCGTGCTGGGTTACGCTTTTTCATTTGTTCAAAACAATCGAAGATTC
128 TTCGAGAATCATGCCCTATCGTGCTGGGTTACGATTTCTCATTTGTTCAAAACAATCGAAGATTC
* *
70422852 CTTCAGAATTTCACTCGCGTTTTCTAAAAACTCTTTAAAACAAAGGAATGTTAGGTGTTTGGCAA
193 CTTCAGAATTTCACTCACGTTTTCTAAAAACTCTTTAAAACAAAGGAATGTTAGATGTTTGGCAA
* *
70422917 TTCGG
258 TCCGC
* * *
70422922 GGAGTAGCGCCCTATCGTGCTGGGTTGCAAT
1 GGAATCGTGCCCTATCGTGCTGGGTTGCAAT
70422953 CTCCCGTTGG
Statistics
Matches: 248, Mismatches: 40, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
262 50 0.20
263 192 0.77
264 6 0.02
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34
Consensus pattern (262 bp):
GGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCAAACGTCCCTTC
AAAATTTCACTCATGTCTCCTAAAAATCCTTTAAAACGAAGGAAATACTTGATGTTTGACAATTC
GAGAATCATGCCCTATCGTGCTGGGTTACGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTT
CAGAATTTCACTCACGTTTTCTAAAAACTCTTTAAAACAAAGGAATGTTAGATGTTTGGCAATCC
GC
Found at i:70434500 original size:132 final size:132
Alignment explanation
Indices: 70434263--70434793 Score: 769
Period size: 132 Copynumber: 4.0 Consensus size: 132
70434253 CGATGAAACC
* * * ** * *
70434263 GAAATTGTAGATCTCGTTTCCCCGAAGTTGCAGTGGAGTGGATTGAA-AAGGATGAATCTTGGCT
1 GAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGG-TGAATCTTGGCT
*
70434327 TCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAATGGAGTAG
65 TCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAG
70434392 GCT
130 GCT
* * *
70434395 GAAATTATAGATCATGTTTCTCTGAAGTTGCAGTGGAGCAGATCGAAGATGGTGAATCTTGGCTT
1 GAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTTGGCTT
*
70434460 CCTGAAGTTGCAATGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
66 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
*
70434525 TT
131 CT
* * **
70434527 GAAATTGTAGATCTTGTTTCCCTGAAGTCGCAGTGGAGC-GAATCGAAGACGACGAATCTTGGCT
1 GAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAG-ATCGAAGACGGTGAATCTTGGCT
* *
70434591 TCCTGAAGTTGCAGTGAAGCAGATTTAGGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAG
65 TCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAG
70434656 GCT
130 GCT
* * * * *
70434659 AAAATTACAGATCTTGTTTCCATGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTAGTCTT
1 GAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTTGGCTT
* * * * *
70434724 CTTGAAGTTGCAGTGAAGTAGATTTAAGCCACCACCCTAGCTCCCTAAAGTTGGAGTGGAGTGGG
66 CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
70434789 CT
131 CT
70434791 GAA
1 GAA
70434794 GATTGCAGAT
Statistics
Matches: 357, Mismatches: 39, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
131 1 0.00
132 352 0.99
133 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (132 bp):
GAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTTGGCTT
CCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG
CT
Found at i:70437835 original size:131 final size:128
Alignment explanation
Indices: 70437592--70438050 Score: 458
Period size: 131 Copynumber: 3.5 Consensus size: 128
70437582 TTCGCAATTA
** * * * *
70437592 TTTAAAACGAAGGCGATATTCGGTATTTGACAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTG
1 TTTAAAACGAAGGAAATATTCGGTGTTTGACAATTCG-GGAATCATGCCCTATCGTGCTGGGTTG
* * *
70437657 CAATTTCTCGTTTGCTCAAAGTAATCGAAGGTCCTTTCA-AATTTCACTCATGTCTTCTAAAAA-
65 CGATTTCTCGTTTTCTCAAAATAATCGAA-GTCCTTT-AGAATTTCACTCATGT-TTCTAAAAAC
70437720 TCC
127 T-C
* * *
70437723 TTTAAAACGAAGGCAATACTCGGTGTTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGT
1 TTTAAAACGAAGGAAATATTCGGTGTTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGC
* *
70437788 GATTTCTCGTTTTCTCAAAATAATCGAACGTCCCTTTAGAATTTCACTAATGGTTCCTAAAAACT
66 GATTTCTCGTTTTCTCAAAATAATCGAA-GT-CCTTTAGAATTTCACTCAT-GTTTCTAAAAACT
70437853 C
128 C
* * * * * * *
70437854 TTTGAAACGAAAGAAATATTCGATGTTTGGA-AATTTGAGAATCGTGCCCTATCGTGCTGGGTTA
1 TTTAAAACGAAGGAAATATTCGGTGTTT-GACAATTCGGGAATCATGCCCTATCGTGCTGGGTTG
* * * * ** *
70437918 CGCTTTTTCATTTGT-TCAAAACAATCGAAGATTCCTTCGGAATTTCACTCACGTTTTCTAAAAA
65 CGATTTCTCGTTT-TCTCAAAATAATCGAAG--TCCTTTAGAATTTCACTCATG-TTTCTAAAAA
70437982 CTC
126 CTC
** * * * *
70437985 TTTAAAATAAAGGAAATGTTCGGTGTTTGGCAATTCGGGGAGTAATGCCCTATCGTGCTGGGTTG
1 TTTAAAACGAAGGAAATATTCGGTGTTTGACAATTC-GGGAATCATGCCCTATCGTGCTGGGTTG
70438050 C
65 C
70438051 AATCTCCCGT
Statistics
Matches: 272, Mismatches: 45, Indels: 21
0.80 0.13 0.06
Matches are distributed among these distances:
130 55 0.20
131 186 0.68
132 31 0.11
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (128 bp):
TTTAAAACGAAGGAAATATTCGGTGTTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGC
GATTTCTCGTTTTCTCAAAATAATCGAAGTCCTTTAGAATTTCACTCATGTTTCTAAAAACTC
Found at i:70444791 original size:16 final size:16
Alignment explanation
Indices: 70444772--70444802 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70444762 CTTCTTCACT
70444772 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
70444788 TACTTACTTACTTAA
1 TACTCACTTACTTAA
70444803 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:70444808 original size:20 final size:20
Alignment explanation
Indices: 70444769--70444808 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
70444759 AAACTTCTTC
* *
70444769 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
70444789 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
70444809 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:70444920 original size:23 final size:24
Alignment explanation
Indices: 70444882--70444926 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
70444872 TTTGCTCTTC
*
70444882 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
70444906 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
70444927 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:70445125 original size:53 final size:54
Alignment explanation
Indices: 70444994--70445247 Score: 274
Period size: 55 Copynumber: 4.8 Consensus size: 54
70444984 ACACGGGTAC
* * * *
70444994 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
70445043 CTTACCATTGCCATG-CTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
70445095 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
70445150 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
70445203 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
70445248 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 20, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
48 23 0.13
49 16 0.09
52 19 0.11
53 34 0.20
54 8 0.05
55 71 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:70445184 original size:108 final size:109
Alignment explanation
Indices: 70445041--70445240 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 109
70445031 ATCCTTTTGA
* *
70445041 AACTTACCATTGCCATGCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA-
1 AACTTACCAATGCCATGCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAAT
70445103 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
70445148 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATG-CTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
70445213 TTCCATGCCTTGGCATGGTCTTACATGG
65 TGCCATGCCTTGGCATGGTCTTACATGG
70445241 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
107 16 0.19
108 33 0.40
109 7 0.08
110 27 0.33
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (109 bp):
AACTTACCAATGCCATGCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAATT
GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:70450209 original size:33 final size:33
Alignment explanation
Indices: 70450172--70450247 Score: 134
Period size: 33 Copynumber: 2.3 Consensus size: 33
70450162 TACCCTCTGT
70450172 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
* *
70450205 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCG
1 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
70450238 TTGGTGTGTT
1 TTGGTGTGTT
70450248 AGAGGGATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.13, C:0.08, G:0.34, T:0.45
Consensus pattern (33 bp):
TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
Found at i:70450256 original size:33 final size:33
Alignment explanation
Indices: 70450187--70450256 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
70450177 GTGTTGGTTA
* **
70450187 GATTAGCTCTTATGAGCATTGGTGTGTTGGTTG
1 GATTAGCTCTTATGAGCATTGGTGTGTTAGAGG
*
70450220 GATTAGCTCTTATGAGCGTTGGTGTGTTAGAGG
1 GATTAGCTCTTATGAGCATTGGTGTGTTAGAGG
70450253 GATT
1 GATT
70450257 TTCTTGCGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.17, C:0.09, G:0.34, T:0.40
Consensus pattern (33 bp):
GATTAGCTCTTATGAGCATTGGTGTGTTAGAGG
Found at i:70450408 original size:29 final size:29
Alignment explanation
Indices: 70450338--70450397 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
70450328 GGAAAATCTC
70450338 AGTAAGATAATTTGTTTAATGAATTTGAA
1 AGTAAGATAATTTGTTTAATGAATTTGAA
70450367 AGTAAGATAATTTGTTTAATGAATTTGAA
1 AGTAAGATAATTTGTTTAATGAATTTGAA
70450396 AG
1 AG
70450398 ATTTGTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (29 bp):
AGTAAGATAATTTGTTTAATGAATTTGAA
Found at i:70450912 original size:26 final size:26
Alignment explanation
Indices: 70450883--70450990 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
70450873 TGATACAAAT
70450883 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
70450909 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70450935 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
** *
70450961 TGATAATGATTTAGGTAAATGTTACA
1 TGATAATGGGTTAGGTAAATGTTCCA
70450987 TGAT
1 TGAT
70450991 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70462350 original size:15 final size:15
Alignment explanation
Indices: 70462330--70462398 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
70462320 GTATCTTGGG
70462330 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
70462345 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
70462360 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
70462375 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
70462390 TTTCTTTAT
1 TTTCTTTAT
70462399 TCGGTTTCTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:70462399 original size:30 final size:30
Alignment explanation
Indices: 70462321--70462407 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
70462311 CATAGTATCG
* * * * *
70462321 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
70462351 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
70462381 TATCTTGGATTTCTTTATTC--GGTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
70462408 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 7 0.14
29 1 0.02
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:70478202 original size:5 final size:5
Alignment explanation
Indices: 70478194--70478220 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
70478184 TTTGTTTTAT
70478194 TATAA TATAA TATAA TATAA TATAA TA
1 TATAA TATAA TATAA TATAA TATAA TA
70478221 CATATTACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:70478620 original size:4 final size:5
Alignment explanation
Indices: 70478593--70478631 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
70478583 TTCAACTGTG
70478593 AAAAT AAAAT AAAAAT AAAA- ATAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT -AAAAT AAAAT A-AAAT AAAAT AAAAT AAA
70478632 GAACACATAG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 1 0.03
5 24 0.77
6 6 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:70482636 original size:14 final size:14
Alignment explanation
Indices: 70482619--70482645 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70482609 AAATATCATA
70482619 TTAATTTAAATTTG
1 TTAATTTAAATTTG
70482633 TTAATTTAAATTT
1 TTAATTTAAATTT
70482646 ATTCGATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
TTAATTTAAATTTG
Found at i:70501711 original size:624 final size:625
Alignment explanation
Indices: 70499170--70502919 Score: 7238
Period size: 624 Copynumber: 6.0 Consensus size: 625
70499160 ATACCCTGTA
** * *
70499170 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTTAATCTCTCTGTTCGAGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
*
70499235 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAAGACAAGTTTCACAACTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
* * *
70499300 TTTAAATGATTGAGTGTTGTTCAACAAATTTTCCGACGAACCCAAAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
* *
70499365 TGCTATCTCTTTCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTGTTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
70499430 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
* *
70499495 AAAAATAATTT-TATAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
326 AAAAATAATTTAAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
70499559 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
391 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
*
70499624 TTTAATTATTTCATTAAAAACATCTAATTTACGCTGATGTTTATAAATGAACTAGAGAGTTTTAT
456 TTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTAT
70499689 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
521 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
70499754 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
586 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
70499794 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
70499859 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
*
70499924 TTTAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
70499989 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
70500054 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
70500119 AAAAATAATTTTAAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATT
326 AAAAATAA-TTTAAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATT
70500184 CAAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCT
390 CAAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCT
70500249 TTTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTA
455 TTTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTA
70500314 TCTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACT
520 TCTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACT
70500379 TAGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
585 TAGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
70500420 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
70500485 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
70500550 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
70500615 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
70500680 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
70500745 AAAAATAATTTAAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
326 AAAAATAATTTAAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
70500810 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
391 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
70500875 TTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTAT
456 TTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTAT
70500940 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
521 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
70501005 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
586 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
*
70501045 TCTCCATCATGTATATCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
70501110 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
70501175 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
70501240 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
70501305 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
70501370 AAAAATAATTT-AAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
326 AAAAATAATTTAAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
70501434 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
391 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
70501499 TTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTAT
456 TTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTAT
70501564 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
521 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
70501629 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
586 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
70501669 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
70501734 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
70501799 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
*
70501864 TGCTATCTCTTCCGGTCCACTCTTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
70501929 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
*
70501994 AAAAATAATTT-TAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
326 AAAAATAATTTAAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
70502058 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
391 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
70502123 TTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTAT
456 TTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTAT
70502188 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
521 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
70502253 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
586 AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
70502293 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
1 TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
70502358 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
66 CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
70502423 TTCAAATGATTGAGTGTTGTTCAACATATTTT-CGACGAACCCAGAGAATAGAAACATCACTATT
131 TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
* *
70502487 TGCTATCTCTTCCGGTCCACTCTTTAGCTATTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
196 TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
*
70502552 TTTTATTTAAAACCCCTCTAAATAAGCCAAGGATTTTTTATAATTAGTTTTATATGTTATGCATT
261 TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
70502617 AAAAATAATTTAAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
326 AAAAATAATTTAAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
70502682 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
391 AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
**
70502747 TTTAATTATTTCATTAAAAACATCTAATTTATGCTGATGTTTATAAATGAACTAGAGAGTTTTAT
456 TTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTAT
* *
70502812 CTTATCACTTCAATTAGAGTTTAAGAAGACTATAGACATCTATTATTAATACAACACTCTCACTT
521 CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
70502877 AGATGTCTATAAAAGAAAAAAAGGGTAAACTACAAAAATAG
586 AGATGTCTATAAAAG-AAAAAAGGGTAAACTACAAAAATAG
70502918 TC
1 TC
70502920 ACTTTTGTTT
Statistics
Matches: 3098, Mismatches: 24, Indels: 7
0.99 0.01 0.00
Matches are distributed among these distances:
623 171 0.06
624 1653 0.53
625 657 0.21
626 617 0.20
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (625 bp):
TCTCCATCATGTATGTCTTCTTTTTACCCCTGTCGACCTCTCTGTTCGTGGCTGTAATTATAAAA
CAGCAGAACAAGGGTGCTGTGAAAAGGAGAGACTGGACGTAAAAGGACAAGTTTCACAACTTCTT
TTCAAATGATTGAGTGTTGTTCAACATATTTTCCGACGAACCCAGAGAATAGAAACATCACTATT
TGCTATCTCTTCCGGTCCACTCCTTAGCTGTTTTATTTAAAAGCCTTCTATTATTTGTTCTTCTG
TTTTATTTAAAACCCCTCTAAATAAGCCAGGGATTTTTTATAATTAGTTTTATATGTTATGCATT
AAAAATAATTTAAAAAAAAAAGTAAAAGGAAGATGGAAAATAAGCTAGAAATTTTTCATGTATTC
AAATTTCACGTTTTATTTATAAACTCTTTACATTCAATTCAATAAAGTATAAGTAAATAAGTCTT
TTTAATTATTTCATTAAAAACATCTAATTTACACTGATGTTTATAAATGAACTAGAGAGTTTTAT
CTCATCACTTCAATTAGAGTTTAAGAAGACTATAGAGATCTATTATTAATACAACACTCTCACTT
AGATGTCTATAAAAGAAAAAAGGGTAAACTACAAAAATAG
Found at i:70503814 original size:17 final size:17
Alignment explanation
Indices: 70503794--70503827 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
70503784 AGGTTTAGGT
70503794 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
70503811 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
70503828 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:70508025 original size:34 final size:34
Alignment explanation
Indices: 70507977--70508046 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
70507967 CCTAAAGATA
70507977 AAGTAAAAATGATCTTAAAAATAAAATAAAAAGT
1 AAGTAAAAATGATCTTAAAAATAAAATAAAAAGT
*
70508011 AAGTCAAAATGATCTTAAAAATAAAATAAAAAGT
1 AAGTAAAAATGATCTTAAAAATAAAATAAAAAGT
70508045 AA
1 AA
70508047 TTTAAAAAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.64, C:0.04, G:0.09, T:0.23
Consensus pattern (34 bp):
AAGTAAAAATGATCTTAAAAATAAAATAAAAAGT
Found at i:70508083 original size:20 final size:19
Alignment explanation
Indices: 70508058--70508095 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
70508048 TTAAAAAGGT
*
70508058 AAATAAAGATAAAAGTAAAC
1 AAATAAAAAT-AAAGTAAAC
70508078 AAATAAAAATAAAGTAAA
1 AAATAAAAATAAAGTAAA
70508096 GTCTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (19 bp):
AAATAAAAATAAAGTAAAC
Found at i:70515936 original size:89 final size:89
Alignment explanation
Indices: 70515780--70515957 Score: 320
Period size: 89 Copynumber: 2.0 Consensus size: 89
70515770 ATGCCATTTA
* *
70515780 AATATTCAACTTACCGTTTGAATCTCTTTATGAAGTCTATTGACTCATTCGTATTCAATTCAACC
1 AATATTCAACTTACCATTTGAATATCTTTATGAAGTCTATTGACTCATTCGTATTCAATTCAACC
*
70515845 CCTAGGGCTCAATTCTAATCGGAT
66 CCTAAGGCTCAATTCTAATCGGAT
*
70515869 AATATTCAACTTACCATTTGAATATCTTTATGAAGTCTATTGACTCATTCGTATTCAATTCAGCC
1 AATATTCAACTTACCATTTGAATATCTTTATGAAGTCTATTGACTCATTCGTATTCAATTCAACC
70515934 CCTAAGGCTCAATTCTAATCGGAT
66 CCTAAGGCTCAATTCTAATCGGAT
70515958 CGTACAATCT
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (89 bp):
AATATTCAACTTACCATTTGAATATCTTTATGAAGTCTATTGACTCATTCGTATTCAATTCAACC
CCTAAGGCTCAATTCTAATCGGAT
Found at i:70516989 original size:15 final size:15
Alignment explanation
Indices: 70516940--70516993 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
70516930 CCCAAAGGTG
70516940 TTAATTAAGCTTAAT
1 TTAATTAAGCTTAAT
*
70516955 ATTAATTAAGCATAGA-
1 -TTAATTAAGCTTA-AT
70516971 TTAATTAAG-TTAAT
1 TTAATTAAGCTTAAT
70516985 CTTAATTAA
1 -TTAATTAA
70516994 TACCTAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
13 1 0.03
14 2 0.06
15 17 0.52
16 12 0.36
17 1 0.03
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.43
Consensus pattern (15 bp):
TTAATTAAGCTTAAT
Found at i:70519135 original size:26 final size:25
Alignment explanation
Indices: 70519100--70519214 Score: 83
Period size: 26 Copynumber: 4.6 Consensus size: 25
70519090 ACAGCTCTTA
*
70519100 TGAGCGTCCCGATATATGGCTCTTCG
1 TGAGCTTCCCGATATATGGCTC-TCG
* * *
70519126 TGAGCTTCCCGAT-TAAAGGTTCTTTG
1 TGAGCTTCCCGATAT-ATGGCTC-TCG
* *
70519152 TGAGCTTCCTGAT-TAGTGGCTCTCC
1 TGAGCTTCCCGATATA-TGGCTCTCG
* * *
70519177 AGAGCTTCCCGATAT-TGGCTCGCT
1 TGAGCTTCCCGATATATGGCTCTCG
*
70519201 TGAACTTCCCGATA
1 TGAGCTTCCCGATA
70519215 ATAGGTTACC
Statistics
Matches: 71, Mismatches: 15, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
24 19 0.27
25 14 0.20
26 38 0.54
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.33
Consensus pattern (25 bp):
TGAGCTTCCCGATATATGGCTCTCG
Found at i:70519246 original size:74 final size:77
Alignment explanation
Indices: 70519101--70519248 Score: 180
Period size: 74 Copynumber: 2.0 Consensus size: 77
70519091 CAGCTCTTAT
* * * *
70519101 GAGCGTCCCGATATATGGCTCTTCGTGAGCTTCCCGATTAAAGGTTCTTTGTGAGCTTCCTGATT
1 GAGCGTCCCGATATATGGCTCTGCGTGAACTTCCCGATTAAAGGTTCTCTGTGAGCTTCCTAATT
*
70519166 AGTGGCTCTCCA
66 AATGGCTCTCCA
* *
70519178 GAGCTTCCCGATAT-TGGCTC-GCTTGAACTTCCCGA-TAATAGGTTAC-CTG-GAGCTTCCTAA
1 GAGCGTCCCGATATATGGCTCTGCGTGAACTTCCCGATTAA-AGGTT-CTCTGTGAGCTTCCTAA
70519238 TTAATGGCTCT
64 TTAATGGCTCT
70519249 TCGGATCTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
74 23 0.37
75 19 0.31
76 7 0.11
77 13 0.21
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (77 bp):
GAGCGTCCCGATATATGGCTCTGCGTGAACTTCCCGATTAAAGGTTCTCTGTGAGCTTCCTAATT
AATGGCTCTCCA
Found at i:70519293 original size:24 final size:23
Alignment explanation
Indices: 70519266--70519363 Score: 70
Period size: 25 Copynumber: 4.0 Consensus size: 23
70519256 TATTCGTTTT
*
70519266 TGGCTCGTATGAGCTTCCTGATTA
1 TGGCTCGTATAAGCTTCCTG-TTA
*
70519290 TGGCTCTTATAAGCTTCCTGTTA
1 TGGCTCGTATAAGCTTCCTGTTA
** * *
70519313 TACAACCCGGATAAGCTTCCTGTTACA
1 T--GGCTCGTATAAGCTTCCTGTT--A
* * *
70519340 TAGCTCATATAAGCTTCCCGTTA
1 TGGCTCGTATAAGCTTCCTGTTA
70519363 T
1 T
70519364 ATGGCTCGAG
Statistics
Matches: 58, Mismatches: 12, Indels: 9
0.73 0.15 0.11
Matches are distributed among these distances:
23 6 0.10
24 18 0.31
25 32 0.55
27 2 0.03
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (23 bp):
TGGCTCGTATAAGCTTCCTGTTA
Found at i:70525017 original size:25 final size:25
Alignment explanation
Indices: 70524989--70525293 Score: 287
Period size: 25 Copynumber: 12.2 Consensus size: 25
70524979 AAAATGTTTT
70524989 TGGCGTATCATTTGGAAAGCCTTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
*
70525014 TGGCATATCATTTGGAAAGCCTTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
* * * *
70525039 TGGTGAAT-TTTCTAGGAAA-CTTTTG
1 TGGCGTATCATT-T-GGAAAGCCTTTG
*
70525064 TGGCGTATCATTTAGAAAGCCTTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
* * ** *
70525089 TGGTGAATTC-TTTGGAAAGGTTTTT
1 TGGCGTA-TCATTTGGAAAGCCTTTG
* * *
70525114 TGACATATCATTTGGAAAGTCTTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
* * *
70525139 TGGCGAATTC-TCTAGAAAGCCTTTG
1 TGGCGTA-TCATTTGGAAAGCCTTTG
* *
70525164 TGGTGTACCATTTGGAAAG-CTCTTG
1 TGGCGTATCATTTGGAAAGCCT-TTG
* * *
70525189 TGGCGAATTATTTGGAAAGCCCTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
70525214 TGGCGTATCATTTGGAAAGCCTTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
* * *
70525239 TGGCGAATTATTTGGAAAGCCCTTG
1 TGGCGTATCATTTGGAAAGCCTTTG
* *
70525264 TGGCATATCATTTGGAAAGCCTTGG
1 TGGCGTATCATTTGGAAAGCCTTTG
70525289 TGGCG
1 TGGCG
70525294 AATTTTCTAG
Statistics
Matches: 218, Mismatches: 52, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
24 11 0.05
25 195 0.89
26 12 0.06
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (25 bp):
TGGCGTATCATTTGGAAAGCCTTTG
Found at i:70525082 original size:50 final size:50
Alignment explanation
Indices: 70524989--70525297 Score: 363
Period size: 50 Copynumber: 6.2 Consensus size: 50
70524979 AAAATGTTTT
* *
70524989 TGGCGTATCATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
1 TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
* * * *
70525039 TGGTGAATT-TTCTAGGAAA-CTTTTGTGGCGTATCATTTAGAAAGCCTTTG
1 TGGCGAATTATT-T-GGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
* * ** * * *
70525089 TGGTGAATTCTTTGGAAAGGTTTTTTGACATATCATTTGGAAAGTCTTTG
1 TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
* * * ** *
70525139 TGGCGAATTCTCTAGAAAGCCTTTGTGGTGTACCATTTGGAAAG-CTCTTG
1 TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCT-TTG
* *
70525189 TGGCGAATTATTTGGAAAGCCCTTGTGGCGTATCATTTGGAAAGCCTTTG
1 TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
* *
70525239 TGGCGAATTATTTGGAAAGCCCTTGTGGCATATCATTTGGAAAGCCTTGG
1 TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
70525289 TGGCGAATT
1 TGGCGAATT
70525298 TTCTAGACAG
Statistics
Matches: 223, Mismatches: 30, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
49 9 0.04
50 205 0.92
51 9 0.04
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (50 bp):
TGGCGAATTATTTGGAAAGCCTTTGTGGCATATCATTTGGAAAGCCTTTG
Found at i:70529632 original size:61 final size:58
Alignment explanation
Indices: 70529530--70529645 Score: 169
Period size: 61 Copynumber: 1.9 Consensus size: 58
70529520 TCAAAATAAA
* *
70529530 TATTAAATTAATATAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTAAATATTAAATC
* *
70529588 TATTAAATTAATAGAATATTTATCTACAAGATTAATATTAAATTAAATTAAATATTAA
1 TATTAAATTAATAGAATACTTA--T-CAAGATAAATATTAAATTAAATTAAATATTAA
70529646 GATAATCATT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 20 0.39
60 1 0.02
61 30 0.59
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTAAATATTAAATC
Found at i:70529671 original size:20 final size:18
Alignment explanation
Indices: 70529619--70529672 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
70529609 ATCTACAAGA
70529619 TTAATATTAAATTAA-AT
1 TTAATATTAAATTAATAT
*
70529636 TAAATATTAAGA-TAATCATT
1 TTAATATTAA-ATTAAT-A-T
70529656 TTAATATTAAATTAATA
1 TTAATATTAAATTAATA
70529673 AAATACTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 12 0.40
18 1 0.03
19 3 0.10
20 14 0.47
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (18 bp):
TTAATATTAAATTAATAT
Found at i:70530851 original size:24 final size:24
Alignment explanation
Indices: 70530819--70530865 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
70530809 TAGTAAAAAC
70530819 ATGTCGTACACAAGTCATGTACCA
1 ATGTCGTACACAAGTCATGTACCA
70530843 ATGTCGTACACAAGTCATGTACC
1 ATGTCGTACACAAGTCATGTACC
70530866 CAACATACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (24 bp):
ATGTCGTACACAAGTCATGTACCA
Found at i:70536934 original size:34 final size:34
Alignment explanation
Indices: 70536889--70536954 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
70536879 GTTTCAGTTA
*
70536889 GGGCCTTAGCCCATATCAGTAACAGTAGCAGTCT
1 GGGCCTGAGCCCATATCAGTAACAGTAGCAGTCT
* * * *
70536923 GGGCCTGAGCCCATTTTAGTAATAGTATCAGT
1 GGGCCTGAGCCCATATCAGTAACAGTAGCAGT
70536955 GGGGCCTAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (34 bp):
GGGCCTGAGCCCATATCAGTAACAGTAGCAGTCT
Found at i:70540218 original size:13 final size:14
Alignment explanation
Indices: 70540195--70540223 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
70540185 TTGAAAATAT
70540195 GTTGAATTGGATTG
1 GTTGAATTGGATTG
70540209 GTTG-ATTGGATTG
1 GTTGAATTGGATTG
70540222 GT
1 GT
70540224 CTCGATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.45
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:70548030 original size:14 final size:15
Alignment explanation
Indices: 70548003--70548035 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
70547993 TGATTTTTCC
70548003 TAAAAAAAATAAAAA
1 TAAAAAAAATAAAAA
*
70548018 TAAAAATAA-AAAAA
1 TAAAAAAAATAAAAA
70548032 TAAA
1 TAAA
70548036 TTCGTAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (15 bp):
TAAAAAAAATAAAAA
Found at i:70554159 original size:22 final size:22
Alignment explanation
Indices: 70554107--70554164 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 22
70554097 GTACGGGTTC
* *
70554107 AGCACTTCAGTGCTCTCTACTT
1 AGCACTTCAATGCTCTATACTT
* * *
70554129 AGTAGTTCAATGCTCTATATTT
1 AGCACTTCAATGCTCTATACTT
* *
70554151 AGCATTTCACTGCT
1 AGCACTTCAATGCT
70554165 TTTTGCTGTG
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (22 bp):
AGCACTTCAATGCTCTATACTT
Found at i:70555211 original size:18 final size:19
Alignment explanation
Indices: 70555167--70555217 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
70555157 ATAACAGTGG
*
70555167 CAGTAATCAGCGCAGTAAC
1 CAGTAATCAGTGCAGTAAC
* *
70555186 CA-TGATCAATGCAGTAA-
1 CAGTAATCAGTGCAGTAAC
70555203 CAGTAATCAGTGCAG
1 CAGTAATCAGTGCAG
70555218 AATGCAAACA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (19 bp):
CAGTAATCAGTGCAGTAAC
Found at i:70555621 original size:27 final size:27
Alignment explanation
Indices: 70555576--70555649 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
70555566 GAGCAAATCA
* *
70555576 ATCATTTTACCTTACAGGGGTATTAC-
1 ATCATTTTACCCTATAGGGGTATTACG
*
70555602 AGTCATTTTACCCTATAGGGGTATTTCG
1 A-TCATTTTACCCTATAGGGGTATTACG
70555630 ATCATTTTACCCTATGAGGG
1 ATCATTTTACCCTAT-AGGG
70555650 TAAAATTGTC
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 1 0.02
27 36 0.86
28 5 0.12
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
ATCATTTTACCCTATAGGGGTATTACG
Found at i:70555661 original size:27 final size:27
Alignment explanation
Indices: 70555631--70555758 Score: 116
Period size: 27 Copynumber: 4.7 Consensus size: 27
70555621 GGTATTTCGA
* *
70555631 TCATTTTACCCTATGAGGGTAAAATTG
1 TCATTTTACCATATAAGGGTAAAATTG
* * * *
70555658 TCATTTTATCACATAA-GGTCAATATCG
1 TCATTTTACCATATAAGGGT-AAAATTG
*
70555685 TCATTTTATCATATAAGGG-AAATATTG
1 TCATTTTACCATATAAGGGTAAA-ATTG
* * *
70555712 TCATTTTATCATATAAGGGCAATATTG
1 TCATTTTACCATATAAGGGTAAAATTG
* *
70555739 TCATTTTATCACATAAGGGT
1 TCATTTTACCATATAAGGGT
70555759 TCAGGTACGC
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
26 5 0.06
27 76 0.89
28 4 0.05
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (27 bp):
TCATTTTACCATATAAGGGTAAAATTG
Found at i:70555689 original size:54 final size:54
Alignment explanation
Indices: 70555631--70555757 Score: 166
Period size: 54 Copynumber: 2.4 Consensus size: 54
70555621 GGTATTTCGA
* * *
70555631 TCATTTTACCCTATGAGGGTAAA-ATTGTCATTTTATCACATAAGGTCAATATCG
1 TCATTTTACCATATAAGGG-AAATATTGTCATTTTATCACATAAGGGCAATATCG
* * *
70555685 TCATTTTATCATATAAGGGAAATATTGTCATTTTATCATATAAGGGCAATATTG
1 TCATTTTACCATATAAGGGAAATATTGTCATTTTATCACATAAGGGCAATATCG
* *
70555739 TCATTTTATCACATAAGGG
1 TCATTTTACCATATAAGGG
70555758 TTCAGGTACG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 3 0.05
54 62 0.95
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (54 bp):
TCATTTTACCATATAAGGGAAATATTGTCATTTTATCACATAAGGGCAATATCG
Found at i:70557102 original size:12 final size:12
Alignment explanation
Indices: 70557085--70557109 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70557075 AACAATTTTG
70557085 AGGGAAAAGCTA
1 AGGGAAAAGCTA
70557097 AGGGAAAAGCTA
1 AGGGAAAAGCTA
70557109 A
1 A
70557110 CTTAGCCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.32, T:0.08
Consensus pattern (12 bp):
AGGGAAAAGCTA
Found at i:70562076 original size:19 final size:18
Alignment explanation
Indices: 70562012--70562076 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 18
70562002 TTGTATGTTC
*
70562012 TTATTTATAATATCATTATT
1 TTATTTATTATAT-A-TATT
*
70562032 TATATTTA-TATTTATATT
1 T-TATTTATTATATATATT
*
70562050 TTA-CTATTATATATATGT
1 TTATTTATTATATATAT-T
70562068 TTATTTATT
1 TTATTTATT
70562077 GTTTGTTTGT
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
16 2 0.06
17 10 0.28
18 9 0.25
19 5 0.14
20 4 0.11
21 6 0.17
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (18 bp):
TTATTTATTATATATATT
Found at i:70570302 original size:43 final size:43
Alignment explanation
Indices: 70570254--70570417 Score: 199
Period size: 43 Copynumber: 3.8 Consensus size: 43
70570244 TATCGATATG
*
70570254 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
*
70570297 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
* * * * * *
70570340 TGATTTCGTGTAAGA-CACTTTCTGAGACAGTGGCATCG-ATATG
1 TGATTACATGTAAGACCA-TGTCTGGGACATTGGCATCGTAT-TA
* *
70570383 TGATAACATGTAAGACCATGTCTGGGATA-TGGCAT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCAT
70570418 TGTGCGAGCT
Statistics
Matches: 105, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
42 10 0.10
43 93 0.89
44 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
Found at i:70581970 original size:7 final size:7
Alignment explanation
Indices: 70581958--70581992 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
70581948 TACCTTTACT
70581958 AATTTTA
1 AATTTTA
70581965 AATTTTA
1 AATTTTA
70581972 AATTTTA
1 AATTTTA
70581979 AATTTTA
1 AATTTTA
70581986 AATTTTA
1 AATTTTA
70581993 TAAAGGGCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATTTTA
Found at i:70584145 original size:48 final size:43
Alignment explanation
Indices: 70584035--70584193 Score: 146
Period size: 41 Copynumber: 3.7 Consensus size: 43
70584025 GGGTGCCAAA
* * * * * *
70584035 GCCATGTCCTAGACATGGTCTTACATGA-GACCACACATTGAT
1 GCCATGTCCCAGACATGGTCTTATACGAGGACCTCATATCGAT
* * * *
70584077 GCCATATCCTAGATATGGTCTTATACGAGG-TCTCATATCGGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTATACGAGGACCTCATA----T--CGAT
70584125 GCCATGTCCCAGACATGGTCTTATA--AGGACCTCATATCGAT
1 GCCATGTCCCAGACATGGTCTTATACGAGGACCTCATATCGAT
70584166 GCCATGTCCCAGACATGGTCTTATACGA
1 GCCATGTCCCAGACATGGTCTTATACGA
70584194 AATCACTTAA
Statistics
Matches: 95, Mismatches: 12, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
41 29 0.31
42 28 0.29
43 3 0.03
46 4 0.04
47 6 0.06
48 25 0.26
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (43 bp):
GCCATGTCCCAGACATGGTCTTATACGAGGACCTCATATCGAT
Found at i:70584211 original size:89 final size:90
Alignment explanation
Indices: 70584028--70584238 Score: 228
Period size: 89 Copynumber: 2.4 Consensus size: 90
70584018 CCAATTAGGG
* * * * * * *
70584028 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGAGACCACACATTGATGCCATATCCTAGATAT
1 TGCCGAAGCCATGTCCCAGACATGGTCTTATAAGAGACCACACATCGATGCCATATCCCAGACAT
** * *
70584093 GGTCTTATACGAGGTCTCATATCGG
66 GGTCTTATACGAAATCACATATCGA
* * * *
70584118 TGCCGATGCCATGTCCCAGACATGGTCTTATAAG-GACCTCATATCGATGCCATGTCCCAGACAT
1 TGCCGAAGCCATGTCCCAGACATGGTCTTATAAGAGACCACACATCGATGCCATATCCCAGACAT
*
70584182 GGTCTTATACGAAATCACTTAAT-GA
66 GGTCTTATACGAAATCACAT-ATCGA
* * *
70584207 TGCCGAAGCCATATCCCTGATATGGTCTTATA
1 TGCCGAAGCCATGTCCCAGACATGGTCTTATA
70584239 CGGGATCTCA
Statistics
Matches: 100, Mismatches: 20, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
89 69 0.69
90 31 0.31
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (90 bp):
TGCCGAAGCCATGTCCCAGACATGGTCTTATAAGAGACCACACATCGATGCCATATCCCAGACAT
GGTCTTATACGAAATCACATATCGA
Found at i:70585304 original size:26 final size:26
Alignment explanation
Indices: 70585268--70585320 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
70585258 TTCTAGAACC
*
70585268 TAAGTTGTGCAGTTTAATCAATTTGG
1 TAAGTTGTGCAATTTAATCAATTTGG
*
70585294 TAAGTTGTGCAATTTATTCAATTTGG
1 TAAGTTGTGCAATTTAATCAATTTGG
70585320 T
1 T
70585321 CCCTAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (26 bp):
TAAGTTGTGCAATTTAATCAATTTGG
Found at i:70589283 original size:15 final size:15
Alignment explanation
Indices: 70589253--70589281 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70589243 ACTATTAGTA
70589253 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
70589268 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
70589282 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:70598952 original size:21 final size:19
Alignment explanation
Indices: 70598928--70598976 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
70598918 AATTATGCTA
70598928 TTAGTCATTGTACTTTATAAT
1 TTAGTCATTGTAC-TT-TAAT
70598949 TTAGTTCA-TGTACTTTAAT
1 TTAG-TCATTGTACTTTAAT
70598968 TTAGTCATT
1 TTAGTCATT
70598977 TTTTGTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.12
19 9 0.35
20 2 0.08
21 9 0.35
22 3 0.12
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (19 bp):
TTAGTCATTGTACTTTAAT
Found at i:70599506 original size:25 final size:25
Alignment explanation
Indices: 70599455--70599506 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
70599445 AACACAAGTC
*
70599455 ACTTCAAAGCATTTGAACTTAACCA
1 ACTTCAAAGCATTTGAACTTAAACA
70599480 ACTTCAAAGCATTTGAA-TGTAAACA
1 ACTTCAAAGCATTTGAACT-TAAACA
70599505 AC
1 AC
70599507 AAATGGCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 1 0.04
25 24 0.96
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.27
Consensus pattern (25 bp):
ACTTCAAAGCATTTGAACTTAAACA
Done.