Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 214 of 253
Found at i:70604976 original size:21 final size:21
Alignment explanation
Indices: 70604952--70604996 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
70604942 GTAATGTTTA
*
70604952 TATTGATTTTAGAATTGTGGG
1 TATTGATTTGAGAATTGTGGG
70604973 TATTGATTTGAGAATTGTGGG
1 TATTGATTTGAGAATTGTGGG
70604994 TAT
1 TAT
70604997 GTTTGAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (21 bp):
TATTGATTTGAGAATTGTGGG
Found at i:70606489 original size:27 final size:28
Alignment explanation
Indices: 70606436--70606494 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
70606426 TTTATATCTT
*
70606436 GTTTTGAAAAGTACTAAAAGTACACAC-
1 GTTTTGAAAAGTACTAAAAATACACACA
* *
70606463 GTTTTGAAAGGTACTAAAAATATACACA
1 GTTTTGAAAAGTACTAAAAATACACACA
70606491 GTTT
1 GTTT
70606495 GACACATGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (28 bp):
GTTTTGAAAAGTACTAAAAATACACACA
Found at i:70607694 original size:9 final size:9
Alignment explanation
Indices: 70607658--70607725 Score: 52
Period size: 10 Copynumber: 7.6 Consensus size: 9
70607648 CGTGTGGCAA
70607658 AAAAATTAT
1 AAAAATTAT
*
70607667 --AAATAAT
1 AAAAATTAT
*
70607674 AAAAATCAAT
1 AAAAAT-TAT
70607684 AAAAATTAT
1 AAAAATTAT
70607693 AAAAATTATT
1 AAAAATTA-T
**
70607703 AAATTTTAAT
1 AAAAATT-AT
70607713 AAAAA-TAT
1 AAAAATTAT
70607721 AAAAA
1 AAAAA
70607726 ATTGTAAATT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
7 6 0.12
8 7 0.15
9 15 0.31
10 19 0.40
11 1 0.02
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:70607705 original size:19 final size:19
Alignment explanation
Indices: 70607662--70607733 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 19
70607652 TGGCAAAAAA
* * *
70607662 ATTATAAATAATAAAAATC
1 ATTAAAAATTATAAAAATT
*
70607681 AATAAAAATTATAAAAATT
1 ATTAAAAATTATAAAAATT
**
70607700 ATTAAATTTTAATAAAAA-T
1 ATTAAAAATT-ATAAAAATT
* *
70607719 ATAAAAAATTGTAAA
1 ATTAAAAATTATAAA
70607734 TTTTTATAAA
Statistics
Matches: 41, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
18 4 0.10
19 30 0.73
20 7 0.17
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (19 bp):
ATTAAAAATTATAAAAATT
Found at i:70607733 original size:28 final size:28
Alignment explanation
Indices: 70607681--70607764 Score: 98
Period size: 29 Copynumber: 2.9 Consensus size: 28
70607671 AATAAAAATC
70607681 AATAAAAAT-TATAAAAATTATTAAATTTT
1 AATAAAAATATA-AAAAATTA-TAAATTTT
*
70607710 AATAAAAATATAAAAAATTGTAAATTTT
1 AATAAAAATATAAAAAATTATAAATTTT
*
70607738 TATAAAAAATCATAAAAGAATTATAAA
1 AAT-AAAAAT-ATAAAA-AATTATAAA
70607765 ATGCATAAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
28 10 0.21
29 22 0.46
30 8 0.17
31 8 0.17
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (28 bp):
AATAAAAATATAAAAAATTATAAATTTT
Found at i:70607765 original size:11 final size:10
Alignment explanation
Indices: 70607684--70607765 Score: 53
Period size: 10 Copynumber: 8.3 Consensus size: 10
70607674 AAAAATCAAT
70607684 AAAAATTAT-
1 AAAAATTATA
70607693 AAAAATTAT-
1 AAAAATTATA
* *
70607702 -TAAATTTTA
1 AAAAATTATA
*
70607711 ATAAAAATATA
1 A-AAAATTATA
*
70607722 AAAAATTGTA
1 AAAAATTATA
***
70607732 AATTTTTATA
1 AAAAATTATA
*
70607742 AAAAATCATA
1 AAAAATTATA
70607752 AAAGAATTATA
1 AAA-AATTATA
70607763 AAA
1 AAA
70607766 TGCATAAAAA
Statistics
Matches: 53, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
8 6 0.11
9 9 0.17
10 22 0.42
11 16 0.30
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.34
Consensus pattern (10 bp):
AAAAATTATA
Found at i:70608980 original size:11 final size:11
Alignment explanation
Indices: 70608964--70608989 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
70608954 AAATGTATCT
70608964 AAATAAATTAA
1 AAATAAATTAA
70608975 AAATAAATTAA
1 AAATAAATTAA
70608986 AAAT
1 AAAT
70608990 TATACTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATAAATTAA
Found at i:70617023 original size:52 final size:47
Alignment explanation
Indices: 70616963--70617154 Score: 172
Period size: 47 Copynumber: 4.0 Consensus size: 47
70616953 AAATGTGATT
* *
70616963 TCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAGATGTGATATGTGC
1 TCCGTATAAGACCATAGCTGGGATATGGCATC----AGATGTGATATGTGC
* * *
70617014 TCCCGTATAAGACCATATCCGGGATATGGCATC-GACGTGATATGTGC
1 T-CCGTATAAGACCATAGCTGGGATATGGCATCAGATGTGATATGTGC
* * * *
70617061 TACTGTATAAGACCATATCTGGGATATAGCATCAG-TGTGATATGTGA
1 T-CCGTATAAGACCATAGCTGGGATATGGCATCAGATGTGATATGTGC
* * * * * *
70617108 TCCGTGTAAGACCATGGGTGGGCTATGGCCTCGGTATGTGATATGTG
1 TCCGTATAAGACCATAGCTGGGATATGGCATCAG-ATGTGATATGTG
70617155 ACTATGTGCA
Statistics
Matches: 117, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
46 24 0.21
47 53 0.45
48 12 0.10
51 1 0.01
52 27 0.23
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (47 bp):
TCCGTATAAGACCATAGCTGGGATATGGCATCAGATGTGATATGTGC
Found at i:70623972 original size:46 final size:45
Alignment explanation
Indices: 70623823--70623982 Score: 227
Period size: 45 Copynumber: 3.6 Consensus size: 45
70623813 ATACCAATGC
*
70623823 CATGTCCCAAACATGGTCTTACACTGACACATTTTGTAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGACACATTTTGTAGCCGATG
70623868 CATGTCCCAGACATGGTCTTACACTGACACATTTTGTAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGACACATTTTGTAGCCGATG
* *
70623913 CATGTCCCAGACAT-GTCTTACACTGACTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGAC--ACATTTTGTA-GCCGATG
* *
70623959 CATGTCCTAGACAT-ATCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
70623983 AGCTCTCGTT
Statistics
Matches: 107, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
44 13 0.12
45 59 0.55
46 35 0.33
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGACACATTTTGTAGCCGATG
Found at i:70624449 original size:30 final size:30
Alignment explanation
Indices: 70624415--70624471 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
70624405 ATAATTAGGC
* * *
70624415 AAAATGACCATTTTGCCCTTATATTTTTAT
1 AAAATAACCATTTTACCCTTAGATTTTTAT
70624445 AAAATAACCATTTTACCCTTAGATTTT
1 AAAATAACCATTTTACCCTTAGATTTT
70624472 AAAATCGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.44
Consensus pattern (30 bp):
AAAATAACCATTTTACCCTTAGATTTTTAT
Found at i:70626376 original size:18 final size:18
Alignment explanation
Indices: 70626353--70626388 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
70626343 TCCCCCGGTG
70626353 ATAGTCTATTATCAACTC
1 ATAGTCTATTATCAACTC
*
70626371 ATAGTCTTTTATCAACTC
1 ATAGTCTATTATCAACTC
70626389 CAACAATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.42
Consensus pattern (18 bp):
ATAGTCTATTATCAACTC
Found at i:70629986 original size:47 final size:44
Alignment explanation
Indices: 70629917--70630227 Score: 197
Period size: 47 Copynumber: 6.7 Consensus size: 44
70629907 TATAATGCTA
* *
70629917 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCATCCATCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GCTC-T-CATCAAGCCG
70629964 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCA-CATATCCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTG-CTCTCATCA-A-----GCCG
* * ** **
70630014 ATGCCATGTCCCAGATATGGTCTTACACTGACGTATTTTGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTG-C-TCTCATCAAGCCG
*
70630060 ATG-CATGTCCCAGACAT-GTCTTACACTGACT-TACATCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTG-CTCT-CA--TC-AAGCCG
* *
70630106 ATGCCATGTCCTAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GCTCTC--ATCAA-GCCG
* * *
70630153 ATGCCATGTCTCAGACATGGTATTACATTGGCTCTCAT-AATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCATCAA----GCCG
*
70630201 ATG-CTTGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
70630228 AGCACACAAA
Statistics
Matches: 213, Mismatches: 28, Indels: 47
0.74 0.10 0.16
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 15 0.07
45 19 0.09
46 26 0.12
47 91 0.43
48 23 0.11
50 34 0.16
51 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (44 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGCTCTCATCAAGCCG
Found at i:70630210 original size:141 final size:141
Alignment explanation
Indices: 70629962--70630227 Score: 340
Period size: 141 Copynumber: 1.9 Consensus size: 141
70629952 TCCATCAAGT
**
70629962 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCCGTGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCT-ACATATCAATGCCGATGCCATGTCCCA
* * * **
70630027 GATATGGTCTTACACTGACGTATTTTGTAGCCGATGCATGTCCCAGACATGTCTTACACTGACTT
65 GACATGGTATTACACTGACCTATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGACTT
70630092 ACATCTCGAGGC
130 ACATCTCGAGGC
* * * *
70630104 CGATGCCATGTCCTAGACAT-GTCTTACACT-AGCTCT-CGTCTCAATGCCGATGCCATGTCTCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTACATATCAATGCCGATGCCATGTCCCA
* * * *
70630166 GACATGGTATTACATTGGCTCTCATAATGTGGCCGATGCTTGTCCCAGACATGTCTTACACT
65 GACATGGTATTACACTGAC-CT-ATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACT
70630228 AGCACACAAA
Statistics
Matches: 106, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
139 36 0.34
140 2 0.02
141 49 0.46
142 19 0.18
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTACATATCAATGCCGATGCCATGTCCCAG
ACATGGTATTACACTGACCTATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGACTTA
CATCTCGAGGC
Found at i:70634008 original size:50 final size:50
Alignment explanation
Indices: 70633948--70634047 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
70633938 GTTTTTTTTA
*
70633948 AATTTGAAAGTAATTATTATTTAAATAAATTATAAAAAAATATTAATCCC
1 AATTTAAAAGTAATTATTATTTAAATAAATTATAAAAAAATATTAATCCC
70633998 AATTTAAAAGTAATTATTATTTAAATAAATTATAAAAAAATATTAATCCC
1 AATTTAAAAGTAATTATTATTTAAATAAATTATAAAAAAATATTAATCCC
70634048 CCCTGCGTTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (50 bp):
AATTTAAAAGTAATTATTATTTAAATAAATTATAAAAAAATATTAATCCC
Found at i:70636488 original size:27 final size:28
Alignment explanation
Indices: 70636449--70636505 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
70636439 TTCGTCCTTC
* *
70636449 ATTTTCTATTTTTTA-ATAAATGGCCCA
1 ATTTTCTACTTTTTACATAAATGACCCA
* *
70636476 ATTTTTTACTTTTTACGTAAATGACCCA
1 ATTTTCTACTTTTTACATAAATGACCCA
70636504 AT
1 AT
70636506 ATGTTTATGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.47
Consensus pattern (28 bp):
ATTTTCTACTTTTTACATAAATGACCCA
Found at i:70637185 original size:12 final size:13
Alignment explanation
Indices: 70637163--70637192 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
70637153 TCTCCTCATC
70637163 CTTTTTCCTTCTT
1 CTTTTTCCTTCTT
70637176 CTTTTT-CTTCTT
1 CTTTTTCCTTCTT
70637188 CTTTT
1 CTTTT
70637193 ATCGCCCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (13 bp):
CTTTTTCCTTCTT
Found at i:70639574 original size:2 final size:2
Alignment explanation
Indices: 70639567--70639598 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
70639557 ATTCTCAAAT
70639567 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
70639599 TTGATAGTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:70646897 original size:123 final size:124
Alignment explanation
Indices: 70646673--70646905 Score: 316
Period size: 123 Copynumber: 1.9 Consensus size: 124
70646663 ATAAAGTTTT
* * **
70646673 TAATATTATATATTCACCTTTGATTGATGAATGCAAGATACTTCTTCATAATATGACTTTTAGGT
1 TAATATTATATATTCACCTTTGATTGATGAATGCAAGATACTTCTTCATAAGATGACTTTGAAAT
*
70646738 CCTTGAAGCATGTGTTTCGAGAAGGCAACAAGTGTGCCGATTGCTTTTTAATAGAGATAC
66 CCTTGAAGCATGTGTTTCGAGAAGGCAACAAATGTGCCGA-TGCTTTTTAATAGAGATAC
*
70646798 TAATATTATAT-TGTCACCTTTGATTGATGAA-G-ACGATA-TTCCTTC-TCAAGATGACTTTGA
1 TAATATTATATAT-TCACCTTTGATTGATGAATGCAAGATACTT-CTTCAT-AAGATGACTTTGA
*
70646858 AATCCTTGAAGCATGTG-TTCTGAGAAGGCAACAAATGTGCTGATGCTT
63 AATCCTTGAAGCATGTGTTTC-GAGAAGGCAACAAATGTGCCGATGCTT
70646906 CGGCCGTACT
Statistics
Matches: 97, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
122 11 0.11
123 55 0.57
124 2 0.02
125 29 0.30
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (124 bp):
TAATATTATATATTCACCTTTGATTGATGAATGCAAGATACTTCTTCATAAGATGACTTTGAAAT
CCTTGAAGCATGTGTTTCGAGAAGGCAACAAATGTGCCGATGCTTTTTAATAGAGATAC
Found at i:70665472 original size:19 final size:20
Alignment explanation
Indices: 70665456--70665500 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
70665446 AAAAATTTAT
*
70665456 AATTTTTATAAA-TATTTTG
1 AATTTTTAAAAATTATTTTG
70665475 AATTTTTAAAAATTATTTTG
1 AATTTTTAAAAATTATTTTG
70665495 -ATTTTT
1 AATTTTT
70665501 TCGGTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (20 bp):
AATTTTTAAAAATTATTTTG
Found at i:70665501 original size:20 final size:19
Alignment explanation
Indices: 70665444--70665500 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
70665434 TTTTTAAAAA
70665444 TAAAAA-ATTTAT-AATTTT
1 TAAAAATATTT-TGAATTTT
*
70665462 TATAAATATTTTGAATTTT
1 TAAAAATATTTTGAATTTT
70665481 TAAAAATTATTTTG-ATTTT
1 TAAAAA-TATTTTGAATTTT
70665500 T
1 T
70665501 TCGGTTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 6 0.18
19 21 0.62
20 7 0.21
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (19 bp):
TAAAAATATTTTGAATTTT
Found at i:70672870 original size:11 final size:12
Alignment explanation
Indices: 70672852--70672889 Score: 51
Period size: 11 Copynumber: 3.1 Consensus size: 12
70672842 ATTTAAGTAA
70672852 ATATATTATATT
1 ATATATTATATT
70672864 A-ATATTATATT
1 ATATATTATATT
70672875 ATTATATTATTATT
1 A-TATATTA-TATT
70672889 A
1 A
70672890 GAATTAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 11 0.48
12 1 0.04
13 6 0.26
14 5 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATATATTATATT
Found at i:70672969 original size:12 final size:12
Alignment explanation
Indices: 70672942--70672975 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
70672932 CAGAATTGGG
70672942 AGAAAAGAGAGAA
1 AGAAAA-AGAGAA
*
70672955 AGAAAAAGGGAA
1 AGAAAAAGAGAA
70672967 AGAAAAAGA
1 AGAAAAAGA
70672976 AAGGAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:70673421 original size:21 final size:21
Alignment explanation
Indices: 70673397--70673439 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
70673387 TGTGTATTAA
70673397 TTGAAATATGTAGTATGAAAT
1 TTGAAATATGTAGTATGAAAT
70673418 TTGAAATATGTAGTATGAAAT
1 TTGAAATATGTAGTATGAAAT
70673439 T
1 T
70673440 GTAGTGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.40
Consensus pattern (21 bp):
TTGAAATATGTAGTATGAAAT
Found at i:70673726 original size:5 final size:5
Alignment explanation
Indices: 70673711--70673755 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
70673701 TAATTGTAGT
* *
70673711 ATTGAA ATTGA ATTGA GTTGA ATTGA ATTGT ATTGA ATTGGA ATT
1 ATTG-A ATTGA ATTGA ATTGA ATTGA ATTGA ATTGA ATT-GA ATT
70673756 TATGAATGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 25 0.74
6 9 0.26
ACGTcount: A:0.36, C:0.00, G:0.22, T:0.42
Consensus pattern (5 bp):
ATTGA
Found at i:70673736 original size:15 final size:15
Alignment explanation
Indices: 70673709--70673755 Score: 60
Period size: 15 Copynumber: 3.0 Consensus size: 15
70673699 GATAATTGTA
70673709 GTATTGAAATTGAATT
1 GTATTG-AATTGAATT
70673725 G-AGTTGAATTGAATT
1 GTA-TTGAATTGAATT
70673740 GTATTGAATTGGAATT
1 GTATTGAATT-GAATT
70673756 TATGAATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 18 0.64
16 10 0.36
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.43
Consensus pattern (15 bp):
GTATTGAATTGAATT
Found at i:70675690 original size:50 final size:50
Alignment explanation
Indices: 70675524--70675695 Score: 175
Period size: 50 Copynumber: 3.4 Consensus size: 50
70675514 GTCTTTCGAA
* * *
70675524 ATAATACGCCATAAAGGCTTTTCACAAGATTAGCCACAAAAGCTTTCCA-
1 ATAATACGCCACAAAGGCTTTTCACAAGATTAGCCACAAAAGATTTTCAG
* * * * * * *
70675573 AGTAATACGACACAATGACTTTTCACGAGATTAACCATAAAAGATTTTAAG
1 A-TAATACGCCACAAAGGCTTTTCACAAGATTAGCCACAAAAGATTTTCAG
** * * * *
70675624 ATAATACGCTGCAAAGGCTTTTCATAAGATTAGCCACAGAGGTTTTTCAG
1 ATAATACGCCACAAAGGCTTTTCACAAGATTAGCCACAAAAGATTTTCAG
*
70675674 ATAATACGCCATAAAGGCTTTT
1 ATAATACGCCACAAAGGCTTTT
70675696 TAGAGAATTT
Statistics
Matches: 95, Mismatches: 26, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
49 1 0.01
50 93 0.98
51 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (50 bp):
ATAATACGCCACAAAGGCTTTTCACAAGATTAGCCACAAAAGATTTTCAG
Found at i:70675695 original size:25 final size:25
Alignment explanation
Indices: 70675524--70675695 Score: 68
Period size: 25 Copynumber: 6.9 Consensus size: 25
70675514 GTCTTTCGAA
* *
70675524 ATAATACGCCATAAAGGCTTTTCAC
1 ATAATACGCCACAAAGGCTTTTCAG
* *
70675549 A-AGATTA-GCCACAAAAGCTTTCCA-
1 ATA-A-TACGCCACAAAGGCTTTTCAG
* * *
70675573 AGTAATACGACACAATGACTTTTCACG
1 A-TAATACGCCACAAAGGCTTTTCA-G
* * * * * * *
70675600 AGATTA-ACCATAAAAGATTTTAAG
1 ATAATACGCCACAAAGGCTTTTCAG
** *
70675624 ATAATACGCTGCAAAGGCTTTTCAT
1 ATAATACGCCACAAAGGCTTTTCAG
* *
70675649 A-AGATTA-GCCACAGAGGTTTTTCAG
1 ATA-A-TACGCCACAAAGGCTTTTCAG
*
70675674 ATAATACGCCATAAAGGCTTTT
1 ATAATACGCCACAAAGGCTTTT
70675696 TAGAGAATTT
Statistics
Matches: 99, Mismatches: 36, Indels: 24
0.62 0.23 0.15
Matches are distributed among these distances:
24 12 0.12
25 77 0.78
26 9 0.09
27 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (25 bp):
ATAATACGCCACAAAGGCTTTTCAG
Found at i:70678605 original size:21 final size:21
Alignment explanation
Indices: 70678546--70678605 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
70678536 ATCATGAAAC
* * *
70678546 AGGGCCACACACCCGTGCGGA
1 AGGGCAACACGCCCGTGTGGA
*
70678567 AGGGCAACATGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
70678588 AGGGCAACACGCCTGTGT
1 AGGGCAACACGCCCGTGT
70678606 AGCTATTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.23, C:0.30, G:0.35, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:70682035 original size:31 final size:31
Alignment explanation
Indices: 70681953--70682042 Score: 137
Period size: 31 Copynumber: 2.9 Consensus size: 31
70681943 AAGTAATCTA
*
70681953 ATCAGTGAGAAGTGGTAGCTCCAGCTACCTG
1 ATCAGTGAGAAGTGGTAGCTTCAGCTACCTG
*
70681984 ATCAGTGAGAAGTGGTAGCTTCAGCTACTTG
1 ATCAGTGAGAAGTGGTAGCTTCAGCTACCTG
*
70682015 ATCAGTGA-ATAGTGGTAGCTTCGGCTAC
1 ATCAGTGAGA-AGTGGTAGCTTCAGCTAC
70682043 AAATGACAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
30 1 0.02
31 54 0.98
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (31 bp):
ATCAGTGAGAAGTGGTAGCTTCAGCTACCTG
Found at i:70686163 original size:21 final size:21
Alignment explanation
Indices: 70686139--70686243 Score: 65
Period size: 21 Copynumber: 5.0 Consensus size: 21
70686129 CGGAAACCCG
70686139 TAAGGGTTGAACAGAAACTCA
1 TAAGGGTTGAACAGAAACTCA
* *
70686160 TAAGAGCTGAAC-GAAAACTCA
1 TAAGGGTTGAACAG-AAACTCA
* *
70686181 -ATAGGGTTAAACTA-AAACTCG
1 TA-AGGGTTGAAC-AGAAACTCA
* * *
70686202 TAAGAGTTGAACTGAAACCCA
1 TAAGGGTTGAACAGAAACTCA
* * *
70686223 TTAGGGTT-AACTGAAGCTCA
1 TAAGGGTTGAACAGAAACTCA
70686243 T
1 T
70686244 GTGAGTTAAC
Statistics
Matches: 63, Mismatches: 15, Indels: 13
0.69 0.16 0.14
Matches are distributed among these distances:
20 13 0.21
21 49 0.78
22 1 0.02
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.22
Consensus pattern (21 bp):
TAAGGGTTGAACAGAAACTCA
Found at i:70686199 original size:42 final size:42
Alignment explanation
Indices: 70686153--70686232 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
70686143 GGTTGAACAG
*
70686153 AAACTCATAAGAGCTGAAC-GAAAACTCAATAGGGTTAAACTA
1 AAACTCATAAGAGCTGAACTG-AAACCCAATAGGGTTAAACTA
* * *
70686195 AAACTCGTAAGAGTTGAACTGAAACCCATTAGGGTTAA
1 AAACTCATAAGAGCTGAACTGAAACCCAATAGGGTTAA
70686233 CTGAAGCTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 32 0.97
43 1 0.03
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (42 bp):
AAACTCATAAGAGCTGAACTGAAACCCAATAGGGTTAAACTA
Found at i:70686251 original size:20 final size:20
Alignment explanation
Indices: 70686228--70686272 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
70686218 ACCCATTAGG
*
70686228 GTTAACTGAAGCTCATGTGA
1 GTTAACTAAAGCTCATGTGA
70686248 GTTAACTAAAGCTCATGTGA
1 GTTAACTAAAGCTCATGTGA
70686268 GTTAA
1 GTTAA
70686273 ACGAAAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (20 bp):
GTTAACTAAAGCTCATGTGA
Found at i:70688495 original size:47 final size:47
Alignment explanation
Indices: 70688441--70688538 Score: 196
Period size: 47 Copynumber: 2.1 Consensus size: 47
70688431 GTTTATAAGA
70688441 AACTAAGTATGAGCAAAAAAGATTGTGAAAGTGGGCACTTCTATACT
1 AACTAAGTATGAGCAAAAAAGATTGTGAAAGTGGGCACTTCTATACT
70688488 AACTAAGTATGAGCAAAAAAGATTGTGAAAGTGGGCACTTCTATACT
1 AACTAAGTATGAGCAAAAAAGATTGTGAAAGTGGGCACTTCTATACT
70688535 AACT
1 AACT
70688539 GCCACAACGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (47 bp):
AACTAAGTATGAGCAAAAAAGATTGTGAAAGTGGGCACTTCTATACT
Found at i:70689528 original size:15 final size:16
Alignment explanation
Indices: 70689508--70689537 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70689498 ACAAGTATAT
70689508 AAATTA-AAAACAATC
1 AAATTAGAAAACAATC
70689523 AAATTAGAAAACAAT
1 AAATTAGAAAACAAT
70689538 GATTAAATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.10, G:0.03, T:0.20
Consensus pattern (16 bp):
AAATTAGAAAACAATC
Found at i:70689641 original size:17 final size:16
Alignment explanation
Indices: 70689620--70689671 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 16
70689610 ATATAAATCA
*
70689620 TAAAAAAAATTAAAAT
1 TAAAAAAAATAAAAAT
*
70689636 TCAAAAAATATAAAAAT
1 T-AAAAAAAATAAAAAT
* *
70689653 TAAAATAAAT-CAAAT
1 TAAAAAAAATAAAAAT
70689668 TAAA
1 TAAA
70689672 CTATAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.27
16 8 0.27
17 14 0.47
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (16 bp):
TAAAAAAAATAAAAAT
Found at i:70715882 original size:93 final size:93
Alignment explanation
Indices: 70715769--70715940 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
70715759 CGCCCATAAG
* * *
70715769 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCTCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70715834 ACGAGTTTGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
70715862 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70715927 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70715941 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70715937 original size:46 final size:46
Alignment explanation
Indices: 70715762--70715937 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
70715752 TGTAACCCGC
* * * *
70715762 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCTCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* *
70715808 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* *
70715858 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
70715901 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70715938 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:70723421 original size:93 final size:93
Alignment explanation
Indices: 70723306--70723477 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
70723296 CGCCCATAAG
* * *
70723306 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCTTAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70723371 ACGAGTTTGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
70723399 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70723464 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70723478 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70723474 original size:46 final size:46
Alignment explanation
Indices: 70723299--70723474 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
70723289 TGTAACCCGC
* * * *
70723299 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * *
70723345 CCTTAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70723395 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70723438 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70723475 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70723493 original size:46 final size:46
Alignment explanation
Indices: 70723348--70723486 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
70723338 TTCGCATCCT
*
70723348 TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
70723396 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
70723441 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
70723487 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 29 0.39
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:70733453 original size:17 final size:17
Alignment explanation
Indices: 70733431--70733471 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
70733421 AAAAGAAAAT
** *
70733431 AATAAAATTGAAATGAA
1 AATAAAATAAAAATAAA
70733448 AATAAAATAAAAATAAA
1 AATAAAATAAAAATAAA
70733465 AATAAAA
1 AATAAAA
70733472 AGATAGGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.20
Consensus pattern (17 bp):
AATAAAATAAAAATAAA
Found at i:70742769 original size:57 final size:58
Alignment explanation
Indices: 70742606--70742831 Score: 253
Period size: 58 Copynumber: 3.9 Consensus size: 58
70742596 GATTGTTAGT
** * *
70742606 TGGGGATATGAATCCGTGAGCTGTTTTATACTTGCAGAAAA-TTTGAAAGATAATCAAC
1 TGGGGATGCGAATCCGTAAGTTGTTTTATACTTG-AGAAAATTTTGAAAGATAATCAAC
* * * * * **
70742664 TAGGGATGTGAATTCGCAAGTTGTTTTATACTTGAAAAAAAATTGAAAGATAATCAAC
1 TGGGGATGCGAATCCGTAAGTTGTTTTATACTTGAGAAAATTTTGAAAGATAATCAAC
* * *
70742722 TGGGGATG-GAATCCGTAAGTTGTTTTATACATGTGAAAATTTTGAAAGGTAATCAAC
1 TGGGGATGCGAATCCGTAAGTTGTTTTATACTTGAGAAAATTTTGAAAGATAATCAAC
* *
70742779 TGGGGATGCGAATTCACG-AA-ATGTTTTATACTTGTGAAAATTTTGAAAGATAA
1 TGGGGATGCGAA-TC-CGTAAGTTGTTTTATACTTGAGAAAATTTTGAAAGATAA
70742832 CATATAACAC
Statistics
Matches: 144, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
57 54 0.38
58 84 0.58
59 4 0.03
60 2 0.01
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.32
Consensus pattern (58 bp):
TGGGGATGCGAATCCGTAAGTTGTTTTATACTTGAGAAAATTTTGAAAGATAATCAAC
Found at i:70742825 original size:115 final size:116
Alignment explanation
Indices: 70742606--70742831 Score: 287
Period size: 115 Copynumber: 2.0 Consensus size: 116
70742596 GATTGTTAGT
* * *
70742606 TGGGGATATGAATCCGTGAGCTGTTTTATACTTGCAGAAAATTTGAAAGATAATCAACTAGGGAT
1 TGGGGATAGGAATCCGTAAGCTGTTTTATACATGCAGAAAATTTGAAAGATAATCAACTAGGGAT
* * *
70742671 GTGAATTCGCAAGTTGTTTTATACTTGAAAAAAAATTGAAAGATAATCAAC
66 GCGAATTCACAAGATGTTTTATACTTGAAAAAAAATTGAAAGATAATCAAC
* * * *
70742722 TGGGGAT-GGAATCCGTAAGTTGTTTTATACATG-TGAAAATTTTGAAAGGTAATCAACTGGGGA
1 TGGGGATAGGAATCCGTAAGCTGTTTTATACATGCAGAAAA-TTTGAAAGATAATCAACTAGGGA
** **
70742785 TGCGAATTCACGAA-ATGTTTTATACTTGTGAAAATTTTGAAAGATAA
65 TGCGAATTCAC-AAGATGTTTTATACTTGAAAAAAAATTGAAAGATAA
70742832 CATATAACAC
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
114 5 0.05
115 80 0.85
116 9 0.10
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.32
Consensus pattern (116 bp):
TGGGGATAGGAATCCGTAAGCTGTTTTATACATGCAGAAAATTTGAAAGATAATCAACTAGGGAT
GCGAATTCACAAGATGTTTTATACTTGAAAAAAAATTGAAAGATAATCAAC
Found at i:70745846 original size:3 final size:3
Alignment explanation
Indices: 70745838--70745918 Score: 80
Period size: 3 Copynumber: 27.3 Consensus size: 3
70745828 AAATAGATAT
* *
70745838 TTA TTA TTA TAA TTA TTAA TTA TTA TTG TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
70745884 TTA TTA TTA TTA TT- TAA TTGA -TA TTA -TA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA T
70745919 GAAATAAATT
Statistics
Matches: 66, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
2 5 0.08
3 56 0.85
4 5 0.08
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:70745893 original size:40 final size:40
Alignment explanation
Indices: 70745838--70745918 Score: 112
Period size: 40 Copynumber: 2.0 Consensus size: 40
70745828 AAATAGATAT
*
70745838 TTATTATTATAATTATTAATTATTATTG-T-TTATATTATTA
1 TTATTATTATAATTATT-ATT-TAATTGATATTATATTATTA
*
70745878 TTATTATTATTATTATTATTTAATTGATATTATATTATTA
1 TTATTATTATAATTATTATTTAATTGATATTATATTATTA
70745918 T
1 T
70745919 GAAATAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
38 5 0.14
39 4 0.11
40 28 0.76
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (40 bp):
TTATTATTATAATTATTATTTAATTGATATTATATTATTA
Found at i:70749125 original size:69 final size:69
Alignment explanation
Indices: 70749038--70749288 Score: 227
Period size: 69 Copynumber: 3.6 Consensus size: 69
70749028 TGACCGCCAG
* * * * *
70749038 GAGCTTTACTCTCTCTAACTGTGTTGGAGGCTGTGGCTCTTCACCTGCGAGCCTAAATATGATAG
1 GAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCACCTGCGAGCCTAAATATGACAG
70749103 TTGA
66 TTGA
* * ** * * * * * *
70749107 GAGTTTTGCTCTCGCTAACTGTGTTGGAGGCTGTAGCTCTTCGCATGCAAGACTCAATATTACAG
1 GAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCACCTGCGAGCCTAAATATGACAG
** *
70749172 CCGG
66 TTGA
* * * * * * *
70749176 GAGCATTGCTCTCGCTAACTGTATTAGAGGCTACGGCT-TTTAGCCTACGAGCCTTAGTATGACA
1 GAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCA-CCTGCGAGCCTAAATATGACA
70749240 -TATGA
65 GT-TGA
* *
70749245 GAGCTTTGCTCTCGCTAACTGTGTTAAAAGCTGCGGCTCTTCAC
1 GAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCAC
70749289 TTATGAGCCT
Statistics
Matches: 140, Mismatches: 39, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
68 2 0.01
69 135 0.96
70 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.31
Consensus pattern (69 bp):
GAGCTTTGCTCTCGCTAACTGTGTTAGAGGCTGCGGCTCTTCACCTGCGAGCCTAAATATGACAG
TTGA
Found at i:70749297 original size:69 final size:69
Alignment explanation
Indices: 70749176--70749310 Score: 182
Period size: 69 Copynumber: 2.0 Consensus size: 69
70749166 TTACAGCCGG
* * *
70749176 GAGCATTGCTCTCGCTAACTGTATTAGAGGCTACGGCTTTTAGCCTACGAGCCTTAGTATGACAT
1 GAGCATTGCTCTCGCTAACTGTATTAAAAGCTACGGCTTTCAGCCTACGAGCCTTAGTATGACAT
70749241 ATGA
66 ATGA
* * * * *
70749245 GAGCTTTGCTCTCGCTAACTGTGTTAAAAGCTGCGGCTCTTCA-CTTATGAGCCTTAGTATGACA
1 GAGCATTGCTCTCGCTAACTGTATTAAAAGCTACGGCT-TTCAGCCTACGAGCCTTAGTATGACA
70749309 TA
65 TA
70749311 AATGTTGATA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
69 54 0.95
70 3 0.05
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (69 bp):
GAGCATTGCTCTCGCTAACTGTATTAAAAGCTACGGCTTTCAGCCTACGAGCCTTAGTATGACAT
ATGA
Found at i:70759477 original size:94 final size:94
Alignment explanation
Indices: 70759316--70759505 Score: 380
Period size: 94 Copynumber: 2.0 Consensus size: 94
70759306 CCTCAAGGTC
70759316 TAAAAATAGTGCTTTTCTCCTTACCATTCAGTGAAGAAGACATGAAAATGATGATAATAACTTTT
1 TAAAAATAGTGCTTTTCTCCTTACCATTCAGTGAAGAAGACATGAAAATGATGATAATAACTTTT
70759381 TTTATTTTATTTAATTTAATTTATCAAAT
66 TTTATTTTATTTAATTTAATTTATCAAAT
70759410 TAAAAATAGTGCTTTTCTCCTTACCATTCAGTGAAGAAGACATGAAAATGATGATAATAACTTTT
1 TAAAAATAGTGCTTTTCTCCTTACCATTCAGTGAAGAAGACATGAAAATGATGATAATAACTTTT
70759475 TTTATTTTATTTAATTTAATTTATCAAAT
66 TTTATTTTATTTAATTTAATTTATCAAAT
70759504 TA
1 TA
70759506 CCATTTTAAC
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 96 1.00
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (94 bp):
TAAAAATAGTGCTTTTCTCCTTACCATTCAGTGAAGAAGACATGAAAATGATGATAATAACTTTT
TTTATTTTATTTAATTTAATTTATCAAAT
Found at i:70760443 original size:22 final size:22
Alignment explanation
Indices: 70760418--70760460 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
70760408 TTGACTCTGC
*
70760418 TGTCTCTAATACTGACATTCTT
1 TGTCTCTAATACAGACATTCTT
*
70760440 TGTCTCTAGTACAGACATTCT
1 TGTCTCTAATACAGACATTCT
70760461 CTGCGAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (22 bp):
TGTCTCTAATACAGACATTCTT
Found at i:70778599 original size:13 final size:13
Alignment explanation
Indices: 70778583--70778626 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
70778573 CTAAATTAAT
70778583 AAAATAAAATAAA
1 AAAATAAAATAAA
70778596 AAAATAAAAT-AA
1 AAAATAAAATAAA
* *
70778608 ATAATAAAACAAA
1 AAAATAAAATAAA
*
70778621 ATAATA
1 AAAATA
70778627 TCTTCTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 10 0.36
13 18 0.64
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAATAAAATAAA
Found at i:70788739 original size:19 final size:19
Alignment explanation
Indices: 70788693--70788740 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
70788683 GTATATATTT
70788693 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
70788711 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
70788730 TAAGTTTTATT
1 TAAATTTTATT
70788741 CATATTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:70788801 original size:37 final size:37
Alignment explanation
Indices: 70788760--70788844 Score: 98
Period size: 42 Copynumber: 2.2 Consensus size: 37
70788750 AGAATATTTT
**
70788760 TATTTTATCTTTTAGTAGTTTATTAGAAGAAGGGAAC
1 TATTTTATAGTTTAGTAGTTTATTAGAAGAAGGGAAC
*
70788797 TATTTTCTTTTATAGTTTAGTAGTTTATTAGAATAAGGGAAC
1 TA-----TTTTATAGTTTAGTAGTTTATTAGAAGAAGGGAAC
70788839 TATTTT
1 TATTTT
70788845 CCCAATTATG
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
37 6 0.15
42 34 0.85
ACGTcount: A:0.31, C:0.05, G:0.16, T:0.48
Consensus pattern (37 bp):
TATTTTATAGTTTAGTAGTTTATTAGAAGAAGGGAAC
Found at i:70790123 original size:9 final size:9
Alignment explanation
Indices: 70790100--70790394 Score: 102
Period size: 9 Copynumber: 31.1 Consensus size: 9
70790090 ATTTTTATTT
70790100 TAAAAATTA
1 TAAAAATTA
*
70790109 GAAAAAATTA
1 -TAAAAATTA
**
70790119 TAAAAAAAA
1 TAAAAATTA
* *
70790128 TTAAAATCAA
1 TAAAAAT-TA
**
70790138 TAAAAGCTA
1 TAAAAATTA
*
70790147 TAAATATTA
1 TAAAAATTA
**
70790156 TTTAAATTTTA
1 --TAAAAATTA
70790167 ATAAAAAATTA
1 -TAAA-AATTA
70790178 TAAAAATTA
1 TAAAAATTA
70790187 T-AAAATTA
1 TAAAAATTA
*
70790195 TATAAAATTG
1 TA-AAAATTA
70790205 TAAAAA-TA
1 TAAAAATTA
*
70790213 TAAAAA-AA
1 TAAAAATTA
* *
70790221 TTAAAATCAA
1 TAAAAAT-TA
**
70790231 TAAAAGCTA
1 TAAAAATTA
*
70790240 TAAATATTA
1 TAAAAATTA
**
70790249 TTTAAATTTTAA
1 --TAAAAATT-A
70790261 TAAAAAATTA
1 T-AAAAATTA
70790271 TAAAAATTA
1 TAAAAATTA
70790280 T-AAAATTA
1 TAAAAATTA
*
70790288 TATAAAATTG
1 TA-AAAATTA
70790298 TAAAAATATA
1 TAAAAAT-TA
*
70790308 TAGAAATTA
1 TAAAAATTA
*
70790317 T-AAAATTT
1 TAAAAATTA
* *
70790325 TATAAAGTA
1 TAAAAATTA
*
70790334 GTAAGAAAATTT
1 -T-A-AAAATTA
70790346 TACAAAATGTA
1 TA-AAAAT-TA
70790357 -AAAAA-TA
1 TAAAAATTA
70790364 T-AAAATTCA
1 TAAAAATT-A
70790373 TAAAAAATATTA
1 T--AAAA-ATTA
70790385 TAAAAATTA
1 TAAAAATTA
70790394 T
1 T
70790395 CGTACCAAAA
Statistics
Matches: 214, Mismatches: 44, Indels: 55
0.68 0.14 0.18
Matches are distributed among these distances:
7 6 0.03
8 36 0.17
9 67 0.31
10 66 0.31
11 26 0.12
12 10 0.05
13 3 0.01
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (9 bp):
TAAAAATTA
Found at i:70790180 original size:10 final size:9
Alignment explanation
Indices: 70790170--70790394 Score: 106
Period size: 9 Copynumber: 24.0 Consensus size: 9
70790160 AATTTTAATA
70790170 AAAAATTAT
1 AAAAATTAT
70790179 AAAAATTAT
1 AAAAATTAT
70790188 -AAAATTAT
1 AAAAATTAT
*
70790196 ATAAAATTGT
1 A-AAAATTAT
70790206 AAAAA-TAT
1 AAAAATTAT
*
70790214 AAAAA-AAT
1 AAAAATTAT
* *
70790222 TAAAATCAAT
1 AAAAAT-TAT
**
70790232 AAAAGCTAT
1 AAAAATTAT
*
70790241 AAATATTATTT
1 AAAAATTA--T
**
70790252 AAATTTTAAT
1 AAAAATT-AT
70790262 AAAAAATTAT
1 -AAAAATTAT
70790272 AAAAATTAT
1 AAAAATTAT
70790281 -AAAATTAT
1 AAAAATTAT
*
70790289 ATAAAATTGT
1 A-AAAATTAT
70790299 AAAAATATAT
1 AAAAAT-TAT
*
70790309 AGAAATTAT
1 AAAAATTAT
*
70790318 -AAAATTTT
1 AAAAATTAT
* *
70790326 ATAAAGTAGT
1 AAAAATTA-T
*
70790336 AAGAAAATTTT
1 -A-AAAATTAT
70790347 ACAAAATGTA-
1 A-AAAAT-TAT
70790357 AAAAA-TAT
1 AAAAATTAT
70790365 -AAAATTCAT
1 AAAAATT-AT
70790374 AAAAAATATTAT
1 --AAAA-ATTAT
70790386 AAAAATTAT
1 AAAAATTAT
70790395 CGTACCAAAA
Statistics
Matches: 166, Mismatches: 27, Indels: 46
0.69 0.11 0.19
Matches are distributed among these distances:
7 6 0.04
8 36 0.22
9 52 0.31
10 44 0.27
11 15 0.09
12 10 0.06
13 3 0.02
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:70790232 original size:93 final size:93
Alignment explanation
Indices: 70790102--70790316 Score: 376
Period size: 93 Copynumber: 2.3 Consensus size: 93
70790092 TTTTATTTTA
*
70790102 AAAATTAGAAAAAATTATAAAAAAAATTAAAATCAATAAAAGCTATAAATATTATTTAAATTTTA
1 AAAATT-GTAAAAA-TAT-AAAAAAATTAAAATCAATAAAAGCTATAAATATTATTTAAATTTTA
70790167 ATAAAAAATTATAAAAATTATAAAATTATAT
63 ATAAAAAATTATAAAAATTATAAAATTATAT
70790198 AAAATTGTAAAAATATAAAAAAATTAAAATCAATAAAAGCTATAAATATTATTTAAATTTTAATA
1 AAAATTGTAAAAATATAAAAAAATTAAAATCAATAAAAGCTATAAATATTATTTAAATTTTAATA
70790263 AAAAATTATAAAAATTATAAAATTATAT
66 AAAAATTATAAAAATTATAAAATTATAT
* *
70790291 AAAATTGTAAAAATATATAGAAATTA
1 AAAATTGTAAAAATATAAAAAAATTA
70790317 TAAAATTTTA
Statistics
Matches: 116, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
93 101 0.87
94 3 0.03
95 6 0.05
96 6 0.05
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (93 bp):
AAAATTGTAAAAATATAAAAAAATTAAAATCAATAAAAGCTATAAATATTATTTAAATTTTAATA
AAAAATTATAAAAATTATAAAATTATAT
Found at i:70790612 original size:19 final size:19
Alignment explanation
Indices: 70790590--70790646 Score: 53
Period size: 20 Copynumber: 3.0 Consensus size: 19
70790580 TTAATAAATT
70790590 TTAAATTTTTATATTTTTA
1 TTAAATTTTTATATTTTTA
* * *
70790609 TTAAAATTTAATAATTTTTC
1 TTAAATTTTTAT-ATTTTTA
* *
70790629 TAAAATTTAT-TATTTTTA
1 TTAAATTTTTATATTTTTA
70790647 GAATTTTTAT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
18 6 0.21
19 11 0.38
20 12 0.41
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
TTAAATTTTTATATTTTTA
Found at i:70790618 original size:18 final size:18
Alignment explanation
Indices: 70790597--70790646 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
70790587 ATTTTAAATT
*
70790597 TTTATATTTTTATTAAAA
1 TTTATATTTTTACTAAAA
70790615 TTTAATAATTTTT-CTAAAA
1 TTT-AT-ATTTTTACTAAAA
70790634 TTTATTATTTTTA
1 TTTA-TATTTTTA
70790647 GAATTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 10 0.37
19 11 0.41
20 6 0.22
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTATATTTTTACTAAAA
Found at i:70790644 original size:46 final size:47
Alignment explanation
Indices: 70790542--70790656 Score: 112
Period size: 46 Copynumber: 2.5 Consensus size: 47
70790532 CTTATGAAAT
* *
70790542 TTTATT-TTTTTATGATTTTTATGAAAAAATTCTAATTTTTAATAAAT
1 TTTATTATTTTTAT-ATTTTTATGAAAAAATTATAATTTTTAATAAAA
* * * *
70790589 TTTA-AATTTTTATATTTTTAT-TAAAATTTAATAATTTTT-CTAAAA
1 TTTATTATTTTTATATTTTTATGAAAAAATT-ATAATTTTTAATAAAA
*
70790634 TTTATTATTTTTAGAATTTTTAT
1 TTTATTATTTTTA-TATTTTTAT
70790657 AATTTCTAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
45 14 0.25
46 23 0.41
47 19 0.34
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.60
Consensus pattern (47 bp):
TTTATTATTTTTATATTTTTATGAAAAAATTATAATTTTTAATAAAA
Found at i:70790864 original size:87 final size:86
Alignment explanation
Indices: 70790678--70790865 Score: 243
Period size: 86 Copynumber: 2.2 Consensus size: 86
70790668 AGAGCATGAA
*
70790678 CTTAATTGCTTTTTTGAAAAAATTTGAGGGTCCTTTTAATGCATTTTGAAAGTTCAAGTACCCAA
1 CTTAATTGCTTTTTTGAAAAAATTTGAGGGTCCTTTTAATGCATTTCGAAAGTTCAAGTACCCAA
*
70790743 TTGAGTGAAAAAAAAGTAGGG
66 TTGAGTGAAAAAAAAGAAGGG
* * * * ** * **
70790764 CTTAATTGTTTTTTTGAAGAAGA-TTGAGGGTCTTTTTTATGCATTTCGAAAGTTTGAGTGCTTA
1 CTTAATTGCTTTTTTGAA-AAAATTTGAGGGTCCTTTTAATGCATTTCGAAAGTTCAAGTACCCA
*
70790828 ATTGAGTGTAAAAAAATGAAGGG
65 ATTGAGTG-AAAAAAAAGAAGGG
70790851 CTTAATTGCTTTTTT
1 CTTAATTGCTTTTTT
70790866 TTTTTAAAAC
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
86 58 0.67
87 29 0.33
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (86 bp):
CTTAATTGCTTTTTTGAAAAAATTTGAGGGTCCTTTTAATGCATTTCGAAAGTTCAAGTACCCAA
TTGAGTGAAAAAAAAGAAGGG
Found at i:70802043 original size:40 final size:40
Alignment explanation
Indices: 70801954--70802163 Score: 259
Period size: 40 Copynumber: 5.3 Consensus size: 40
70801944 AACCGGGATC
* *
70801954 AGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-TTCGGGCTA
1 AGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATCCGGGCTA
* *
70801995 AGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTA
1 AGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTA
70802035 AGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTA
1 AGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTA
*
70802075 AGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTA
1 AGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTA
* * * *
70802115 TGTCCCGAAAGCA-TTGAGCGAG-TAGCTATATCC-GGTTA
1 AGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTA
*
70802153 AATCCCGAAGG
1 AGTCCCGAAGG
70802164 TACTTGGCTT
Statistics
Matches: 151, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 14 0.09
39 15 0.10
40 102 0.68
41 16 0.11
42 4 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTA
Found at i:70804800 original size:42 final size:42
Alignment explanation
Indices: 70804693--70804833 Score: 115
Period size: 43 Copynumber: 3.3 Consensus size: 42
70804683 GTTTGTGACA
* ** * * *
70804693 TCGTGTAAGACCGTGTCTAGGACACAGGCCTCGAT-TGAGATT
1 TCGTGTAAGACCATGTCCGGGACAGAGGCATCGATAT-TGATT
* * **
70804735 TACGTATAAGACCATGTCTGGGACATTGGCATCG-TATCTGATT
1 T-CGTGTAAGACCATGTCCGGGACAGAGGCATCGATAT-TGATT
* *
70804778 TCGTGTAAGACCCTGTCCGGGACAGAGGCATCGATATTGAAT
1 TCGTGTAAGACCATGTCCGGGACAGAGGCATCGATATTGATT
*
70804820 TAGATGTAAGACCA
1 TCG-TGTAAGACCA
70804834 CGCCTGGGAC
Statistics
Matches: 79, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
42 35 0.44
43 44 0.56
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCCGGGACAGAGGCATCGATATTGATT
Found at i:70804843 original size:43 final size:42
Alignment explanation
Indices: 70804741--70804843 Score: 95
Period size: 42 Copynumber: 2.4 Consensus size: 42
70804731 GATTTACGTA
* * ** * *
70804741 TAAGACCATGTCTGGGACATTGGCATCGTATCTGATTTCGTG
1 TAAGACCACGCCTGGGACAGAGGCATCGTATCTGAATTAGTG
70804783 TAAGACC-CTGTCC-GGGACAGAGGCATCGATAT-TGAATTAGATG
1 TAAGACCAC-G-CCTGGGACAGAGGCATCG-TATCTGAATTAG-TG
70804826 TAAGACCACGCCTGGGAC
1 TAAGACCACGCCTGGGAC
70804844 GTCGGCATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
42 29 0.59
43 19 0.39
44 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (42 bp):
TAAGACCACGCCTGGGACAGAGGCATCGTATCTGAATTAGTG
Found at i:70808119 original size:24 final size:24
Alignment explanation
Indices: 70808092--70808140 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
70808082 TATTTACTAG
70808092 ATTACCAAAATGCCCTTCACTTAA
1 ATTACCAAAATGCCCTTCACTTAA
70808116 ATTACCAAAATGCCCTTCACTTAA
1 ATTACCAAAATGCCCTTCACTTAA
70808140 A
1 A
70808141 CTTTGAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.29, G:0.04, T:0.29
Consensus pattern (24 bp):
ATTACCAAAATGCCCTTCACTTAA
Found at i:70818018 original size:40 final size:40
Alignment explanation
Indices: 70817951--70818197 Score: 304
Period size: 40 Copynumber: 6.2 Consensus size: 40
70817941 CCTTCGGAGT
** * *
70817951 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
70817990 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
70818030 TTAGCCC-GATATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
70818069 TTAGCCCGGATATAATAGCTCGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
70818109 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
** * *
70818149 TTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGAC
70818189 TTAGCCCGG
1 TTAGCCCGG
70818198 TTATCATCCG
Statistics
Matches: 185, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 43 0.23
40 142 0.77
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:70843215 original size:22 final size:22
Alignment explanation
Indices: 70843190--70843235 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
70843180 AATTATTAAC
*
70843190 ATAATGAATTTTAATTAATTTT
1 ATAATAAATTTTAATTAATTTT
*
70843212 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTAATTAATTTT
70843234 AT
1 AT
70843236 TATTTTCGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (22 bp):
ATAATAAATTTTAATTAATTTT
Found at i:70844204 original size:30 final size:30
Alignment explanation
Indices: 70844168--70844228 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
70844158 TTATAAGCCT
*
70844168 AGGTAAGATTCTTGATTAAGTAAAATCATG
1 AGGTAAGATGCTTGATTAAGTAAAATCATG
*
70844198 AGGTAAGATGCTTGATTAAGTAATATCATG
1 AGGTAAGATGCTTGATTAAGTAAAATCATG
70844228 A
1 A
70844229 CTAAGTTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (30 bp):
AGGTAAGATGCTTGATTAAGTAAAATCATG
Found at i:70845437 original size:12 final size:12
Alignment explanation
Indices: 70845417--70845446 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
70845407 TCCAGTTTTT
70845417 ACACAGCCTAAC
1 ACACAGCCTAAC
*
70845429 ACACGGCCTAAC
1 ACACAGCCTAAC
70845441 ACACAG
1 ACACAG
70845447 GTGTGTGAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.40, C:0.40, G:0.13, T:0.07
Consensus pattern (12 bp):
ACACAGCCTAAC
Found at i:70847736 original size:46 final size:46
Alignment explanation
Indices: 70847669--70847843 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
70847659 TGTAACCCGC
70847669 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
70847715 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
70847765 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
70847808 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
70847844 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.58
47 25 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:70847789 original size:93 final size:93
Alignment explanation
Indices: 70847677--70847848 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
70847667 GCCCATAAGT
** *
70847677 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
70847742 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
70847770 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
70847835 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
70847849 CAAATATTCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:70847863 original size:46 final size:45
Alignment explanation
Indices: 70847674--70847863 Score: 107
Period size: 46 Copynumber: 4.1 Consensus size: 45
70847664 CCCGCCCATA
* * * *** *
70847674 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGCCCAAATATCC
* * * *
70847720 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--AATATC-C
* * * * * *** *
70847768 A-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGCTCG--GATGCCCAAATATCC
70847813 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATTCC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATA-TCC
70847859 AGTGA
1 AGTGA
70847864 CATGTCACTT
Statistics
Matches: 110, Mismatches: 25, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
44 9 0.08
45 4 0.04
46 63 0.57
47 29 0.26
48 1 0.01
49 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAAATATCC
Found at i:70850779 original size:27 final size:26
Alignment explanation
Indices: 70850749--70850888 Score: 111
Period size: 27 Copynumber: 5.2 Consensus size: 26
70850739 GGCAAAATGG
* * **
70850749 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTAT-TTAA
* *
70850776 TAATTCTACCTTACAGGGGTATTTTAA
1 TAATTCTACCCTACAAGGGTA-TTTAA
* * *
70850803 TAATTTTACCCTAAAAGGGTATTTTAG
1 TAATTCTACCCTACAAGGGTA-TTTAA
**
70850830 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTT-AA
*
70850857 GACA-TCTACCCTACAAGGGTATTTCAA
1 TA-ATTCTACCCTACAAGGGTATTT-AA
70850884 TAATT
1 TAATT
70850889 TTGTAAATCG
Statistics
Matches: 91, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.04
27 85 0.93
28 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (26 bp):
TAATTCTACCCTACAAGGGTATTTAA
Found at i:70850807 original size:54 final size:54
Alignment explanation
Indices: 70850749--70850853 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
70850739 GGCAAAATGG
* * *
70850749 TAATTTTACCCCACAAGGGTATCTCGA-TAATTCTACCTTACAGGGGTATTTTAA
1 TAATTTTACCCCAAAAGGGTAT-TCGAGTAATTCTACCCTACAAGGGTATTTTAA
* **
70850803 TAATTTTACCCTAAAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTT
1 TAATTTTACCCCAAAAGGGTATTCGAGTAATTCTACCCTACAAGGGTATTT
70850854 CGGGACATCT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
53 2 0.05
54 42 0.95
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (54 bp):
TAATTTTACCCCAAAAGGGTATTCGAGTAATTCTACCCTACAAGGGTATTTTAA
Found at i:70850888 original size:54 final size:54
Alignment explanation
Indices: 70850750--70850888 Score: 136
Period size: 54 Copynumber: 2.6 Consensus size: 54
70850740 GCAAAATGGT
* * * * * * * *
70850750 AATTTTACCCCACAAGGGTATCTCGATAATTCTACCTTACAGGGGTATTTTAAT
1 AATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAAG
* * * * **
70850804 AATTTTACCCTAAAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGG
1 AATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAAG
70850858 ACA-TCTACCCTACAAGGGTATTTCAATAATT
1 A-ATTCTACCCTACAAGGGTATTTCAATAATT
70850889 TTGTAAATCG
Statistics
Matches: 68, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
54 67 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (54 bp):
AATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAAG
Found at i:70850902 original size:27 final size:27
Alignment explanation
Indices: 70850872--70851107 Score: 120
Period size: 27 Copynumber: 8.7 Consensus size: 27
70850862 CTACCCTACA
*
70850872 AGGGTATTTCAATAATTTTGTAAATCG
1 AGGGTATTTCAGTAATTTTGTAAATCG
*** * * *
70850899 AGGGTAAAACGGTAATTCTGTAAAGCG
1 AGGGTATTTCAGTAATTTTGTAAATCG
* * *
70850926 GGGGTACTTT-GGTAATTTT-TACAAGTTG
1 AGGGTA-TTTCAGTAATTTTGTA-AA-TCG
**
70850954 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTGTAAATCG
* *
70850981 AGGGTATTTTAGTAATTTTGCAAA-CTG
1 AGGGTATTTCAGTAATTTTGTAAATC-G
* *** *
70851008 AGGGTATTTCGGTAATTTCACAAATCA
1 AGGGTATTTCAGTAATTTTGTAAATCG
* ** ** *
70851035 AGGGTTTTTTGGTAATTTTACAAA-CC
1 AGGGTATTTCAGTAATTTTGTAAATCG
** * *
70851061 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTCAGTAATTTTGTAAATCG
**
70851089 AGGGTATTTTGGTAATTTT
1 AGGGTATTTCAGTAATTTT
70851108 CCAAGTCGAG
Statistics
Matches: 167, Mismatches: 33, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
26 5 0.03
27 142 0.85
28 19 0.11
29 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTGTAAATCG
Found at i:70851025 original size:54 final size:54
Alignment explanation
Indices: 70850927--70851107 Score: 211
Period size: 54 Copynumber: 3.3 Consensus size: 54
70850917 TGTAAAGCGG
* ** * *
70850927 GGGTACTTTGGTAATTTTTACAAGTTGAGGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAA-TTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATCAA
* * *
70850982 GGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTCGGTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATCAA
* * * ** *
70851036 GGGTTTTTTGGTAATTTTACAAAC-CAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTGA-GGGTATTTCGGTAATTTTACAAATCAA
70851090 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
70851108 CCAAGTCGAG
Statistics
Matches: 107, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
53 1 0.01
54 94 0.88
55 12 0.11
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATCAA
Found at i:70851119 original size:27 final size:27
Alignment explanation
Indices: 70850927--70851119 Score: 183
Period size: 27 Copynumber: 7.1 Consensus size: 27
70850917 TGTAAAGCGG
* * *
70850927 GGGTACTTTGGTAATTTTTACAAGTTGA
1 GGGTATTTTGGTAA-TTTTACAAATCGA
**
70850955 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
70850982 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTATTTTGGTAATTTTACAAATC-GA
* * *
70851009 GGGTATTTCGGTAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
70851036 GGGTTTTTTGGTAATTTTACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCGA
** * *
70851062 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTGGTAATTTTACAAATCGA
* *
70851090 GGGTATTTTGGTAATTTTCCAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
70851117 GGG
1 GGG
70851120 CATTCATGTA
Statistics
Matches: 136, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
26 3 0.02
27 119 0.88
28 14 0.10
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:70851131 original size:81 final size:80
Alignment explanation
Indices: 70850909--70851132 Score: 211
Period size: 81 Copynumber: 2.8 Consensus size: 80
70850899 AGGGTAAAAC
* * * * * *
70850909 GGTAATTCTGTAAAGCGGGGGTACTTTGGTAATTTTTACAAGTTGAGGGTATTTCA-GTAATTTT
1 GGTAATTTTGTAAACCGAGGGTATTTTGGTAA-TTTTCCAAGTCGAGGG-A-TTCATGTAATTTT
*
70850973 ACAAATCGAGGGTATTTT
63 ACAAACCGAGGGTATTTT
* * * * * * * **
70850991 AGTAATTTTGCAAACTGAGGGTATTTCGGTAA-TTTCACAAATCAAGGGTTTTTTGGTAATTTTA
1 GGTAATTTTGTAAACCGAGGGTATTTTGGTAATTTTC-CAAGTCGAGGGATTCAT-GTAATTTTA
70851055 CAAACC-AGGGGTATTTT
64 CAAACCGA-GGGTATTTT
*
70851072 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTCCAAGTCGAGGGCATTCATGTAATT
1 GGTAATTTTGTAAACCGAGGGTATTTTGGTAATTTTCCAAGTCGAGGG-ATTCATGTAATT
70851133 GGTAAACTAA
Statistics
Matches: 110, Mismatches: 26, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
79 2 0.02
80 4 0.04
81 73 0.66
82 31 0.28
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.38
Consensus pattern (80 bp):
GGTAATTTTGTAAACCGAGGGTATTTTGGTAATTTTCCAAGTCGAGGGATTCATGTAATTTTACA
AACCGAGGGTATTTT
Found at i:70853409 original size:31 final size:31
Alignment explanation
Indices: 70853364--70853447 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
70853354 TTAGTCTTGA
*
70853364 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTAGGCCGAAGCCTTTCCATAAAT
* *
70853394 CATATCACTTGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTCCATAAAT
*
70853425 CATATCACTAAGCCGAAGCCTTT
1 CATATCACTAGGCCGAAGCCTTT
70853448 ACTGTAAACG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTCCATAAAT
Found at i:70853520 original size:42 final size:42
Alignment explanation
Indices: 70853471--70853604 Score: 241
Period size: 42 Copynumber: 3.2 Consensus size: 42
70853461 TATCCCTTAG
*
70853471 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
70853513 GACCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
70853555 GCCCATTTCAATATCACATGTAATGTCAATGAATGAATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
70853597 GCCCATTT
1 GCCCATTT
70853605 GGGGAGACTA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:70853803 original size:25 final size:26
Alignment explanation
Indices: 70853755--70853821 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 26
70853745 TTTTAATAAC
70853755 TGGGGCAAAGCCC-TTTCTGATAAAA
1 TGGGGCAAAGCCCTTTTCTGATAAAA
* *
70853780 TGGGGCAAAGCCCTTTTC-GGTAAAC
1 TGGGGCAAAGCCCTTTTCTGATAAAA
* *
70853805 TGGGGTAGAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
70853822 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 33 0.89
26 4 0.11
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (26 bp):
TGGGGCAAAGCCCTTTTCTGATAAAA
Found at i:70854775 original size:27 final size:26
Alignment explanation
Indices: 70854722--70854966 Score: 138
Period size: 27 Copynumber: 9.0 Consensus size: 26
70854712 ATTTCATCCT
* * *
70854722 ACAAGGGTGTTTTGGT-ATATCTATAA
1 ACAAGGGTATTTTGGTAAT-TTTGTAA
*
70854748 ACCAAGGGTATTTTAGTAATTTTGTAA
1 A-CAAGGGTATTTTGGTAATTTTGTAA
* *
70854775 ACCAATGGTATTTCT-ATAATTTT-TAGAA
1 A-CAAGGGTATTT-TGGTAATTTTGT--AA
*
70854803 AGTTAAGGGTATTTCT-GTAATTTTGTAA
1 A--CAAGGGTATTT-TGGTAATTTTGTAA
** **
70854831 ATTAGGAGTATTTTGGTAATTTTACAA
1 ACAAGG-GTATTTTGGTAATTTTGTAA
** * ***
70854858 ATTGAGGGTATTTCGGTAATTTCACAA
1 A-CAAGGGTATTTTGGTAATTTTGTAA
* **
70854885 ACTAGTGGTATTTTGGTAATTTTACAA
1 ACAAG-GGTATTTTGGTAATTTTGTAA
*
70854912 ACTAGAGGTATTTTGGTAATTTTGTAA
1 ACAAG-GGTATTTTGGTAATTTTGTAA
*
70854939 ACCAAGGGTATTTTAGTAATTTTGTAA
1 A-CAAGGGTATTTTGGTAATTTTGTAA
70854966 A
1 A
70854967 TTGAGGGTAA
Statistics
Matches: 182, Mismatches: 25, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
26 9 0.05
27 138 0.76
28 16 0.09
29 18 0.10
30 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTGTAA
Found at i:70854842 original size:56 final size:54
Alignment explanation
Indices: 70854751--70854975 Score: 176
Period size: 54 Copynumber: 4.1 Consensus size: 54
70854741 TCTATAAACC
* *
70854751 AAGGGTATTT-TAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTT
1 AAGGGTATTTCT-GTAATTTTGTAAACCAAGGGTATTT-TGATAA-TTTTACAAA-TT
** *
70854807 AAGGGTATTTCTGTAATTTTGTAAA-TTAGGAGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCTGTAATTTTGTAAACCAAGG-GTATTTTGATAATTTTACAAATT
* * *** * * *
70854861 GAGGGTATTTCGGTAATTTCACAAA-CTAGTGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCTGTAATTTTGTAAACCAAG-GGTATTTTGATAATTTTACAAATT
**
70854915 -AGAGGTATTT-TGGTAATTTTGTAAACCAAGGGTATTTT-AGTAATTTTGTAAATT
1 AAG-GGTATTTCT-GTAATTTTGTAAACCAAGGGTATTTTGA-TAATTTTACAAATT
*
70854969 GAGGGTA
1 AAGGGTA
70854976 AAACAGTAAT
Statistics
Matches: 139, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
53 2 0.01
54 87 0.63
55 17 0.12
56 32 0.23
57 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.43
Consensus pattern (54 bp):
AAGGGTATTTCTGTAATTTTGTAAACCAAGGGTATTTTGATAATTTTACAAATT
Found at i:70854947 original size:81 final size:81
Alignment explanation
Indices: 70854752--70854960 Score: 201
Period size: 81 Copynumber: 2.6 Consensus size: 81
70854742 CTATAAACCA
* * * * *
70854752 AGGGTATTTTAGTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAGAAAGTTAAGGGTATT
1 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTC-AGTAA-TTTCACAAAGCTAAGGGTATT
** *
70854816 TCTGTAATTTTGTAAATT
64 TCTGTAATTTTACAAACT
** *** *
70854834 AGGAGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CT-AGTGGTATT
1 AGG-GTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTCACAAAGCTAAG-GGTATT
70854897 T-TGGTAATTTTACAAACT
64 TCT-GTAATTTTACAAACT
*
70854915 AGAGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTT
1 AG-GGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTT
70854961 TGTAAATTGA
Statistics
Matches: 101, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
80 3 0.03
81 57 0.56
82 11 0.11
83 30 0.30
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTCACAAAGCTAAGGGTATTTC
TGTAATTTTACAAACT
Found at i:70854973 original size:27 final size:27
Alignment explanation
Indices: 70854808--70855155 Score: 164
Period size: 27 Copynumber: 12.9 Consensus size: 27
70854798 TAGAAAGTTA
70854808 AGGGTATTTCT-GTAATTTTGTAAATT-
1 AGGGTATTT-TGGTAATTTTGTAAATTG
**
70854834 AGGAGTATTTTGGTAATTTTACAAATTG
1 AGG-GTATTTTGGTAATTTTGTAAATTG
* *** *
70854862 AGGGTATTTCGGTAATTTCACAAACT-
1 AGGGTATTTTGGTAATTTTGTAAATTG
** *
70854888 AGTGGTATTTTGGTAATTTTACAAACT-
1 AG-GGTATTTTGGTAATTTTGTAAATTG
***
70854915 AGAGGTATTTTGGTAATTTTGTAAACCA
1 AG-GGTATTTTGGTAATTTTGTAAATTG
*
70854943 AGGGTATTTTAGTAATTTTGTAAATTG
1 AGGGTATTTTGGTAATTTTGTAAATTG
***** * *
70854970 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATTG
*** *
70854997 AGGGTAAAATGGTAATTCTGTAAATTG
1 AGGGTATTTTGGTAATTTTGTAAATTG
*** * * *
70855024 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATTG
**** * * * *
70855051 AGGGTAAAACGATAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATTG
**** * *
70855078 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATTG
* **
70855105 AGGGTACTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTGTAAATTG
** * *
70855132 AGGACATTTTAGTAATTTGGTAAA
1 AGGGTATTTTGGTAATTTTGTAAA
70855156 CTAAAGTATT
Statistics
Matches: 272, Mismatches: 45, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.02
27 261 0.96
28 5 0.02
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTGTAAATTG
Found at i:70854985 original size:54 final size:53
Alignment explanation
Indices: 70854926--70855134 Score: 204
Period size: 54 Copynumber: 3.9 Consensus size: 53
70854916 GAGGTATTTT
* * * * * *
70854926 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTA-TATAGTAATTCTATAAATTGAGGGTAAAAC
* * * * *
70854980 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGT-ATATAGTAATTCTATAAATTGAGGGTAAAAC
* * *
70855034 GGTAATTCTATAAATCGAGGGTA-AAACGATAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTATATA-G-TAATTCTATAAATTGAGGGTAAAAC
* * * *
70855088 GGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGG
1 GGTAATTCTGTAAATCGAGGGTA-TATAGTAATTCTATAAATTGAGG
70855135 ACATTTTAGT
Statistics
Matches: 127, Mismatches: 23, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
52 1 0.01
53 2 0.02
54 122 0.96
55 2 0.02
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (53 bp):
GGTAATTCTGTAAATCGAGGGTATATAGTAATTCTATAAATTGAGGGTAAAAC
Found at i:70855010 original size:81 final size:81
Alignment explanation
Indices: 70854925--70855134 Score: 269
Period size: 81 Copynumber: 2.6 Consensus size: 81
70854915 AGAGGTATTT
* * * * * *
70854925 TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAAC-AGTAATTCT
1 TGGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTAAAACGA-TAATTCT
*
70854989 GTAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* ** * *
70855006 TGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
1 TGGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTAAAACGATAATTCTA
70855071 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * *
70855087 CGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGG
1 TGGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTATAAATTGAGG
70855135 ACATTTTAGT
Statistics
Matches: 108, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 107 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCGAGGGTAATTTGGTAATTTTATAAATTGAGGGTAAAACGATAATTCTA
TAAATCGAGGGTAAAA
Found at i:70857329 original size:42 final size:42
Alignment explanation
Indices: 70857282--70857415 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
70857272 TGGCCCTTAG
*
70857282 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
70857324 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
70857366 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
70857408 GCCCATTT
1 GCCCATTT
70857416 GGGGAGACTA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:70858473 original size:26 final size:27
Alignment explanation
Indices: 70858412--70858475 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
70858402 GGGCATATTC
70858412 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCATACAAGGGTATTACG
* * *
70858439 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTACG
70858466 GTC-TTTTACC
1 GTCATTTTACC
70858476 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.19
27 25 0.78
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACG
Found at i:70858558 original size:27 final size:27
Alignment explanation
Indices: 70858506--70858749 Score: 136
Period size: 27 Copynumber: 9.0 Consensus size: 27
70858496 TTTCATCCTA
* * * *
70858506 CAAGGGTGTTTTGGTAAATCTATAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
70858533 CAAGGGTATTTCAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
70858560 CAATGGTATTTCTA-TAATTTTTAGAAAGA
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-C
* * *
70858589 TAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAC
* * * *
70858616 TAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
*** * *
70858643 TGTGGGTATTTT-GATAATTTCACAAAC
1 CAAGGGTATTTTAG-TAATTTTATAAAC
* *
70858670 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTAGTAATTTTATAAAC
* * * *
70858697 TAGGGGTATTTTGGTAATTTTCTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
70858724 CAATGGTATTTTAGTAATTTTGTAAA
1 CAAGGGTATTTTAGTAATTTTATAAA
70858750 TCGAGGATAA
Statistics
Matches: 173, Mismatches: 35, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.02
27 139 0.80
28 17 0.10
29 14 0.08
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAC
Found at i:70858678 original size:54 final size:54
Alignment explanation
Indices: 70858620--70858744 Score: 173
Period size: 54 Copynumber: 2.3 Consensus size: 54
70858610 GTAAATTAAG
* *
70858620 GGTATTTTGGTAATTTTACAAA-TTGTGGGTATTTTGATAA-TTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAATTTTC-CAAACCAAT
* *
70858674 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTCTAAACCAAT
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTCCAAACCAAT
*
70858728 GGTATTTTAGTAATTTT
1 GGTATTTTGGTAATTTT
70858745 GTAAATCGAG
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
54 58 0.91
55 6 0.09
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTCCAAACCAAT
Found at i:70858767 original size:27 final size:27
Alignment explanation
Indices: 70858737--70858890 Score: 200
Period size: 27 Copynumber: 5.7 Consensus size: 27
70858727 TGGTATTTTA
* * *
70858737 GTAATTTTGTAAATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* **
70858764 GTAATTCTGTAAATTTAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
70858791 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
70858818 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
70858845 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
70858872 GTAATTTTGTAAATCGAGG
1 GTAATTCTATAAATCGAGG
70858891 ATACTTTGGT
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:70858796 original size:81 final size:81
Alignment explanation
Indices: 70858711--70858884 Score: 177
Period size: 81 Copynumber: 2.1 Consensus size: 81
70858701 GGTATTTTGG
* * *** * * * *
70858711 TAATTTTCTAAACCAATGGTATTTTAGTAATTTTGTAAATCGAGGATAAAACGGTAATTCTGTAA
1 TAATTTTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGATAAAACGATAATTCTATAA
**
70858776 ATTTAGGGTAAAACGA
66 ATCGAGGGTAAAACGA
* *** * *
70858792 TAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAA
1 TAATTTTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGATAAAACGATAATTCTATAA
*
70858857 ATCGAGGGTAAAACGG
66 ATCGAGGGTAAAACGA
*
70858873 TAATTTTGTAAA
1 TAATTTTATAAA
70858885 TCGAGGATAC
Statistics
Matches: 73, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.33
Consensus pattern (81 bp):
TAATTTTATAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGATAAAACGATAATTCTATAA
ATCGAGGGTAAAACGA
Found at i:70858885 original size:81 final size:81
Alignment explanation
Indices: 70858737--70858918 Score: 211
Period size: 81 Copynumber: 2.2 Consensus size: 81
70858727 TGGTATTTTA
* * * * **
70858737 GTAATTTTGTAAATCGAGGATAAAACGGTAATTCTGTAAATTTAGGGTAAAACGATAATTCTATA
1 GTAATTCTATAAATCGAGGATAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
* *
70858802 AATTGAGGGTAAAATG
66 AATCGAGGATAAAATG
* * * *
70858818 GTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTA
1 GTAATTCTATAAATCGAGGATAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
***
70858883 AATCGAGGATACTTTG
66 AATCGAGGATAAAATG
* *
70858899 GTAATTCTACAAATTGAGGA
1 GTAATTCTATAAATCGAGGA
70858919 CATTTTAGTA
Statistics
Matches: 83, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGATAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
AATCGAGGATAAAATG
Found at i:70858907 original size:54 final size:54
Alignment explanation
Indices: 70858746--70858890 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
70858736 AGTAATTTTG
* **
70858746 TAAATCGAGGATAAAACGGTAATTCTGTAAATTTAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
* * *
70858800 TAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
*
70858854 TAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGG
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGG
70858891 ATACTTTGGT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.29
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
Found at i:70861007 original size:31 final size:31
Alignment explanation
Indices: 70860955--70861069 Score: 169
Period size: 31 Copynumber: 3.7 Consensus size: 31
70860945 TTAGTCTTAA
* *
70860955 CATAT-ACTGGGCGGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* * *
70860985 CATATCACTAGACCGAAACCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
70861016 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
70861047 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
70861070 ACTGTAAACG
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
30 5 0.07
31 69 0.93
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:70861152 original size:42 final size:42
Alignment explanation
Indices: 70861093--70861226 Score: 223
Period size: 42 Copynumber: 3.2 Consensus size: 42
70861083 TGGCCCTTAG
* *
70861093 GCCCATTTCAATATCACATGTTATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
70861135 GCCCATTTCAATATCACATGTAATGTTAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
* *
70861177 GCCCATTTCAATATCATATGCAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
70861219 GCCCATTT
1 GCCCATTT
70861227 GGGGAGACTA
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 86 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:70861655 original size:27 final size:27
Alignment explanation
Indices: 70861625--70861791 Score: 178
Period size: 27 Copynumber: 6.2 Consensus size: 27
70861615 GGCAAAATGG
* * *
70861625 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
70861652 TAATTCTACCCTATAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
70861678 GTAATTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
70861706 TAATTCTACCCTATAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
70861732 GTAATTCTACCCTA-TAGGGATATTTCGG
1 -TAATTCTACCCTACAAGGG-TATTTCGA
* *
70861760 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
70861787 TAATT
1 TAATT
70861792 TTGTAAATCG
Statistics
Matches: 116, Mismatches: 18, Indels: 12
0.79 0.12 0.08
Matches are distributed among these distances:
26 4 0.03
27 109 0.94
28 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:70861779 original size:54 final size:54
Alignment explanation
Indices: 70861624--70861791 Score: 257
Period size: 54 Copynumber: 3.1 Consensus size: 54
70861614 GGGCAAAATG
* * * *
70861624 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
70861678 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
* *
70861732 GTAATTCTACCCTA-TAGGGATATTTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGG-TATTTCGGTAATTCTACCCTATAGGGGTATTTCA
*
70861786 ATAATT
1 GTAATT
70861792 TTGTAAATCG
Statistics
Matches: 106, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 4 0.04
54 102 0.96
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
Found at i:70861806 original size:27 final size:26
Alignment explanation
Indices: 70861776--70862010 Score: 129
Period size: 27 Copynumber: 8.7 Consensus size: 26
70861766 TACCCTACAG
*
70861776 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTT-AGTAATTTTGTAAATCGA
** * * *
70861803 GGGTAAAATAGTAATTCTGTAAATTGG
1 GGGT-ATTTAGTAATTTTGTAAATCGA
*
70861830 GGGTACTTTGGTAATTTT-TACAAGTCGA
1 GGGTA-TTTAGTAATTTTGTA-AA-TCGA
**
70861858 GGGTACTTTAGTAATTTTACAAATCGA
1 GGGTA-TTTAGTAATTTTGTAAATCGA
*
70861885 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTT-AGTAATTTTGTAAATC-GA
* *
70861912 GGGTATTTCGGTAATTTTATAAATC-A
1 GGGTATTT-AGTAATTTTGTAAATCGA
* ** *
70861938 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTA-TTTAGTAATTTTGTAAATCGA
* *
70861965 GGGGTATTTTGGTAATTTTGTAAA-CTAA
1 -GGGTA-TTTAGTAATTTTGTAAATC-GA
*
70861993 GGGTATTTTGGTAATTTT
1 GGGTA-TTTAGTAATTTT
70862011 ACAAGTCAAG
Statistics
Matches: 174, Mismatches: 22, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
26 9 0.05
27 136 0.78
28 28 0.16
29 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.40
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTGTAAATCGA
Found at i:70862021 original size:27 final size:27
Alignment explanation
Indices: 70861830--70862035 Score: 184
Period size: 27 Copynumber: 7.6 Consensus size: 27
70861820 TGTAAATTGG
* * *
70861830 GGGTACTTTGGTAATTTTTACAAGTCGA
1 GGGTATTTTGGTAA-TTTTACAAATCAA
* * *
70861858 GGGTACTTTAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
** * *
70861885 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTTGGTAATTTTACAAATC-AA
* * *
70861912 GGGTATTTCGGTAATTTTATAAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
* *
70861939 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
**
70861966 GGGTATTTTGGTAATTTTGTAAA-CTAA
1 GGGTATTTTGGTAATTTTACAAATC-AA
*
70861993 GGGTATTTTGGTAATTTTACAAGTCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
*
70862020 GGGCATTTCT-GTAATT
1 GGGTATTT-TGGTAATT
70862036 GGTAAACTAA
Statistics
Matches: 153, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.01
27 135 0.88
28 16 0.10
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAA
Found at i:70862034 original size:81 final size:80
Alignment explanation
Indices: 70861830--70862035 Score: 243
Period size: 81 Copynumber: 2.5 Consensus size: 80
70861820 TGTAAATTGG
* * * *
70861830 GGGTACTTTGGTAATTTTTACAAGTCGAGGGTACTTTAGTAATTTTACAAATCGAGGGTATTTCA
1 GGGTATTTTGGTAA-TTTTACAAGTCAAGGGTA-TTTTGTAATTTTACAAACCGAGGGTATTTCA
*
70861895 GTAATTTTGCAAACTGA
64 GTAATTTTGCAAACTAA
* * * * **
70861912 GGGTATTTCGGTAATTTTATAAATCAGGGGTATTTTGGTAATTTTACAAACC-AGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTT-GTAATTTTACAAACCGA-GGGTATTTCA
*
70861976 GTAATTTTGTAAACTAA
64 GTAATTTTGCAAACTAA
*
70861993 GGGTATTTTGGTAATTTTACAAGTCAAGGGCATTTCTGTAATT
1 GGGTATTTTGGTAATTTTACAAGTCAAGGGTATTT-TGTAATT
70862036 GGTAAACTAA
Statistics
Matches: 104, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
80 4 0.04
81 87 0.84
82 13 0.12
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTTGTAATTTTACAAACCGAGGGTATTTCAGT
AATTTTGCAAACTAA
Found at i:70875537 original size:13 final size:12
Alignment explanation
Indices: 70875518--70875547 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
70875508 CCTAAAAATA
70875518 ATGGTTTAGGTT
1 ATGGTTTAGGTT
70875530 AGTGGTTTAGGTT
1 A-TGGTTTAGGTT
70875543 ATGGT
1 ATGGT
70875548 GAGAAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (12 bp):
ATGGTTTAGGTT
Found at i:70878218 original size:22 final size:22
Alignment explanation
Indices: 70878193--70878245 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
70878183 AAAGCCAATA
*
70878193 TACAAATCAAAT-TTCTTAAGAT
1 TACAAATCAAATCTTC-TAAAAT
70878215 TACAAAATCAAATCTTCTAAAAT
1 TAC-AAATCAAATCTTCTAAAAT
*
70878238 TAGAAATC
1 TACAAATC
70878246 TTCTAAGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 8 0.30
23 16 0.59
24 3 0.11
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTTCTAAAAT
Found at i:70886721 original size:55 final size:55
Alignment explanation
Indices: 70886595--70886729 Score: 137
Period size: 55 Copynumber: 2.5 Consensus size: 55
70886585 GTCCACGGCT
** *
70886595 GTGTTGTTTTGGCAGGTTCGCCCACAGTTGCTTGGCACGGGCGTGCCGCACCCTC
1 GTGTTGTTTTGGCAGGTTCGCCCACAGTTGCAAGGCACGGGCGTGCAGCACCCTC
** * * * ** * * *
70886650 GTGTTAATTTGACAGGTTTGGCCATGGTTTCAAGGCATGGGCGTGTAGCACGCC-C
1 GTGTTGTTTTGGCAGGTTCGCCCACAGTTGCAAGGCACGGGCGTGCAGCAC-CCTC
70886705 GTGTTGTTTTGGCAGGTTCGCCCAC
1 GTGTTGTTTTGGCAGGTTCGCCCAC
70886730 GGCCATGTCG
Statistics
Matches: 60, Mismatches: 19, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
55 58 0.97
56 2 0.03
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.30
Consensus pattern (55 bp):
GTGTTGTTTTGGCAGGTTCGCCCACAGTTGCAAGGCACGGGCGTGCAGCACCCTC
Found at i:70917258 original size:68 final size:68
Alignment explanation
Indices: 70917137--70917264 Score: 204
Period size: 68 Copynumber: 1.9 Consensus size: 68
70917127 CTTAGAATCA
* *
70917137 GAAGTTCGCAAGGACGGTAAACATGGGATCATATTGTGTAAAACTATAACTGGGCTATGGTAGCA
1 GAAGTTCGCAAGGACAGTAAACATGGGATCATATTGTGTAAAACCATAACTGGGCTATGGTAGCA
70917202 TAC
66 TAC
* *
70917205 GAAGTTCGCCAA-GACAGTAAACATGGGATCATATTGTGTAATACCATAGCTGGGCTATGG
1 GAAGTTCG-CAAGGACAGTAAACATGGGATCATATTGTGTAAAACCATAACTGGGCTATGG
70917265 CAGTATATAA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
68 52 0.95
69 3 0.05
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.25
Consensus pattern (68 bp):
GAAGTTCGCAAGGACAGTAAACATGGGATCATATTGTGTAAAACCATAACTGGGCTATGGTAGCA
TAC
Found at i:70918356 original size:17 final size:17
Alignment explanation
Indices: 70918336--70918370 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
70918326 TAATTTTTGA
70918336 TAGAACATAGTTATGGT
1 TAGAACATAGTTATGGT
70918353 TAGAACATAGTTATGGT
1 TAGAACATAGTTATGGT
70918370 T
1 T
70918371 GGTGACTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (17 bp):
TAGAACATAGTTATGGT
Found at i:70920908 original size:10 final size:10
Alignment explanation
Indices: 70920893--70920954 Score: 61
Period size: 10 Copynumber: 6.1 Consensus size: 10
70920883 TAAATTTAGG
70920893 ATTTATTTTT
1 ATTTATTTTT
*
70920903 ATTTATCTTT
1 ATTTATTTTT
* *
70920913 AATTATCTTT
1 ATTTATTTTT
* *
70920923 AATTATATTT
1 ATTTATTTTT
*
70920933 ATTTATTTGT
1 ATTTATTTTT
70920943 ATTTATCTTTT
1 ATTTAT-TTTT
70920954 A
1 A
70920955 GAATTTAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
10 40 0.91
11 4 0.09
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:70920936 original size:30 final size:30
Alignment explanation
Indices: 70920895--70920952 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
70920885 AATTTAGGAT
*
70920895 TTATTTTTATTTATCTT-TAATTATCTTTAA
1 TTATATTTATTTAT-TTGTAATTATCTTTAA
*
70920925 TTATATTTATTTATTTGTATTTATCTTT
1 TTATATTTATTTATTTGTAATTATCTTT
70920953 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (30 bp):
TTATATTTATTTATTTGTAATTATCTTTAA
Found at i:70924674 original size:4 final size:4
Alignment explanation
Indices: 70924665--70924765 Score: 59
Period size: 4 Copynumber: 24.8 Consensus size: 4
70924655 TTTATTTTTC
70924665 TTTA TTTA -TTA TTTTA TTTGTA TTTA -TTA TTTA -TTA TTTTA TTTTA
1 TTTA TTTA TTTA -TTTA -TT-TA TTTA TTTA TTTA TTTA -TTTA -TTTA
* * * * *
70924711 ATTA TTTA TTTA TTT- TTTA TCTTA ATAA TTTA -TTA CTTA ATTA TTTA
1 TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA
70924758 TTTTA TTT
1 -TTTA TTT
70924766 TGGATATTAA
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
3 15 0.19
4 39 0.49
5 23 0.29
6 2 0.03
ACGTcount: A:0.27, C:0.02, G:0.01, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:70924678 original size:7 final size:7
Alignment explanation
Indices: 70924666--70924759 Score: 70
Period size: 7 Copynumber: 13.3 Consensus size: 7
70924656 TTATTTTTCT
70924666 TTATTTA
1 TTATTTA
70924673 TTA-TT-
1 TTATTTA
70924678 TTATTT-
1 TTATTTA
*
70924684 GTATTTA
1 TTATTTA
70924691 TTATTTA
1 TTATTTA
70924698 TTATTTTA
1 TTA-TTTA
*
70924706 TT-TTAA
1 TTATTTA
70924712 TTATTTA
1 TTATTTA
*
70924719 TTTATTTT
1 -TTATTTA
70924727 TTATCTTAA
1 TTAT-TT-A
*
70924736 TAATTTA
1 TTATTTA
*
70924743 TTACTTAA
1 TTA-TTTA
70924751 TTATTTA
1 TTATTTA
70924758 TT
1 TT
70924760 TTATTTTGGA
Statistics
Matches: 69, Mismatches: 10, Indels: 16
0.73 0.11 0.17
Matches are distributed among these distances:
5 3 0.04
6 14 0.20
7 27 0.39
8 22 0.32
9 3 0.04
ACGTcount: A:0.28, C:0.02, G:0.01, T:0.69
Consensus pattern (7 bp):
TTATTTA
Found at i:70924690 original size:10 final size:10
Alignment explanation
Indices: 70924645--70924727 Score: 62
Period size: 10 Copynumber: 7.9 Consensus size: 10
70924635 CAACCCAATT
* *
70924645 TTTATTTCTC
1 TTTATTTTTA
*
70924655 TTTATTTTTC
1 TTTATTTTTA
70924665 TTTATTTATTA
1 TTTATTT-TTA
*
70924676 TTTTATTTGTA
1 -TTTATTTTTA
70924687 TTTATTATTTA
1 TTTATT-TTTA
70924698 -TTA-TTTTA
1 TTTATTTTTA
70924706 TTTTAATTATTTA
1 -TTT-ATT-TTTA
70924719 TTTATTTTT
1 TTTATTTTT
70924728 TATCTTAATA
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
8 4 0.07
9 1 0.02
10 30 0.49
11 11 0.18
12 11 0.18
13 4 0.07
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:70924700 original size:25 final size:24
Alignment explanation
Indices: 70924666--70924765 Score: 105
Period size: 25 Copynumber: 4.0 Consensus size: 24
70924656 TTATTTTTCT
70924666 TTATTTATTATTTTATTTGTATTTA
1 TTATTTATTATTTTATTT-TATTTA
*
70924691 TTATTTATTATTTTATTTTAATTA
1 TTATTTATTATTTTATTTTATTTA
70924715 TTTATTTATT-TTTTATCTTAATAATTTA
1 -TTATTTATTATTTTAT-TT--T-ATTTA
*
70924743 TTACTTAATTA-TTTATTTTATTT
1 TTA-TTTATTATTTTATTTTATTT
70924766 TGGATATTAA
Statistics
Matches: 65, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
24 15 0.23
25 30 0.46
27 6 0.09
28 14 0.22
ACGTcount: A:0.27, C:0.02, G:0.01, T:0.70
Consensus pattern (24 bp):
TTATTTATTATTTTATTTTATTTA
Found at i:70924702 original size:32 final size:29
Alignment explanation
Indices: 70924644--70924727 Score: 78
Period size: 32 Copynumber: 2.7 Consensus size: 29
70924634 GCAACCCAAT
* *
70924644 TTTTATTTCTCTTTATTTTTCTTTATTTATTA
1 TTTTATTTCTATTTATTTTT-ATTA-TT-TTA
*
70924676 TTTTATTTGTATTTATTATTTATTATTTTA
1 TTTTATTTCTATTTATT-TTTATTATTTTA
*
70924706 TTTTAATTATTTATTTATTTTT
1 TTTT-ATT-TCTATTTATTTTT
70924728 TATCTTAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
30 7 0.16
31 8 0.18
32 27 0.60
33 3 0.07
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (29 bp):
TTTTATTTCTATTTATTTTTATTATTTTA
Found at i:70924728 original size:24 final size:25
Alignment explanation
Indices: 70924665--70924744 Score: 110
Period size: 25 Copynumber: 3.2 Consensus size: 25
70924655 TTTATTTTTC
*
70924665 TTTATTTATTATTTTATTTGTATTTA
1 TTTATTTATTATTTTATTT-TAATTA
70924691 -TTATTTATTATTTTATTTTAATTA
1 TTTATTTATTATTTTATTTTAATTA
* *
70924715 TTTATTTATT-TTTTATCTTAATAA
1 TTTATTTATTATTTTATTTTAATTA
70924739 TTTATT
1 TTTATT
70924745 ACTTAATTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
24 23 0.46
25 27 0.54
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.71
Consensus pattern (25 bp):
TTTATTTATTATTTTATTTTAATTA
Found at i:70925830 original size:96 final size:97
Alignment explanation
Indices: 70925662--70925843 Score: 287
Period size: 96 Copynumber: 1.9 Consensus size: 97
70925652 TTTAAGAATG
* * * *
70925662 TGTTGGGCTGAGTAACATGGGTGAGGTGCTTGGCTTTCATCTCTCTTCTCGTCAAAAGGTTCGAT
1 TGTTGGGCTGAGTAACATGGGTGAGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAAGGTCCAAT
*
70925727 ATGTTCTTAAG-AAAAATAAAAATTAGGAGTA
66 ATATTCTTAAGTAAAAATAAAAATTAGGAGTA
*
70925758 TGTTGGGCTGAGTAAC-TGGGGTGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAAGGTCCAA
1 TGTTGGGCTGAGTAACAT-GGGTGAGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAAGGTCCAA
70925822 TATATTCTTAAGTAAAAATAAA
65 TATATTCTTAAGTAAAAATAAA
70925844 TAAATTAAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
95 1 0.01
96 68 0.87
97 9 0.12
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (97 bp):
TGTTGGGCTGAGTAACATGGGTGAGGTGCTTGGCTATCATCTCTCTTCGCGTCAAAAGGTCCAAT
ATATTCTTAAGTAAAAATAAAAATTAGGAGTA
Found at i:70925871 original size:11 final size:11
Alignment explanation
Indices: 70925855--70925881 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
70925845 AAATTAAATT
70925855 AAAAAAAAGAA
1 AAAAAAAAGAA
70925866 AAAAAAAAGAA
1 AAAAAAAAGAA
70925877 AAAAA
1 AAAAA
70925882 GGGAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:70926526 original size:10 final size:10
Alignment explanation
Indices: 70926511--70926572 Score: 61
Period size: 10 Copynumber: 6.1 Consensus size: 10
70926501 TAAATTTAGG
70926511 ATTTATTTTT
1 ATTTATTTTT
*
70926521 ATTTATCTTT
1 ATTTATTTTT
* *
70926531 AATTATCTTT
1 ATTTATTTTT
* *
70926541 AATTATATTT
1 ATTTATTTTT
*
70926551 ATTTATTTGT
1 ATTTATTTTT
70926561 ATTTATCTTTT
1 ATTTAT-TTTT
70926572 A
1 A
70926573 GAATTTAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
10 40 0.91
11 4 0.09
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:70926554 original size:30 final size:30
Alignment explanation
Indices: 70926513--70926570 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
70926503 AATTTAGGAT
*
70926513 TTATTTTTATTTATCTT-TAATTATCTTTAA
1 TTATATTTATTTAT-TTGTAATTATCTTTAA
*
70926543 TTATATTTATTTATTTGTATTTATCTTT
1 TTATATTTATTTATTTGTAATTATCTTT
70926571 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (30 bp):
TTATATTTATTTATTTGTAATTATCTTTAA
Found at i:70932828 original size:23 final size:22
Alignment explanation
Indices: 70932798--70932850 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
70932788 AAAGGCAATC
70932798 TACAAATCAAATCTCCTAAGAT
1 TACAAATCAAATCTCCTAAGAT
**
70932820 TACATAATCAAATCTTTTAAGAT
1 TACA-AATCAAATCTCCTAAGAT
*
70932843 TGCAAATC
1 TACAAATC
70932851 TTCCAAGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 8 0.30
23 19 0.70
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCCTAAGAT
Found at i:70933518 original size:20 final size:20
Alignment explanation
Indices: 70933476--70933519 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
70933466 GTAAATAAAT
* * **
70933476 AAAAATAAACTAAACAATTA
1 AAAAAAAAACAAAACAAAGA
70933496 AAAAAAAAACAAAACAAAGA
1 AAAAAAAAACAAAACAAAGA
70933516 AAAA
1 AAAA
70933520 GGGGTAAATC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.80, C:0.09, G:0.02, T:0.09
Consensus pattern (20 bp):
AAAAAAAAACAAAACAAAGA
Done.