Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 215 of 253
Found at i:70937754 original size:18 final size:18
Alignment explanation
Indices: 70937727--70937761 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70937717 AGAATTTATT
70937727 CAATTAAAAAAAAACATG
1 CAATTAAAAAAAAACATG
* *
70937745 CAATTTAAAATAAACAT
1 CAATTAAAAAAAAACAT
70937762 TTTTCCAACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.11, G:0.03, T:0.23
Consensus pattern (18 bp):
CAATTAAAAAAAAACATG
Found at i:70941176 original size:25 final size:25
Alignment explanation
Indices: 70941148--70941199 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
70941138 AATTTGATAT
*
70941148 TTCAGCAAAGAAGGCATTGTTGAGA
1 TTCAACAAAGAAGGCATTGTTGAGA
*
70941173 TTCAACAGAGAAGGCATTGTTGAGA
1 TTCAACAAAGAAGGCATTGTTGAGA
70941198 TT
1 TT
70941200 TGCAAACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (25 bp):
TTCAACAAAGAAGGCATTGTTGAGA
Found at i:70942023 original size:24 final size:23
Alignment explanation
Indices: 70941956--70942023 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 23
70941946 TTTTAATAAT
* *
70941956 AATTATA-TTAAGAATGTTATTA
1 AATTATATTTAATAATATTATTA
* *
70941978 AATTATATATT-ATTATCTTTATTA
1 AATTATAT-TTAATAAT-ATTATTA
70942002 AATTATATTTAATAATAATTAT
1 AATTATATTTAATAAT-ATTAT
70942024 ATTAAAGTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
22 7 0.19
23 5 0.14
24 24 0.67
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (23 bp):
AATTATATTTAATAATATTATTA
Found at i:70942086 original size:59 final size:62
Alignment explanation
Indices: 70941911--70942079 Score: 204
Period size: 63 Copynumber: 2.7 Consensus size: 62
70941901 ATACTATTTT
* ** *
70941911 TTAATATTATATATTATGATTTTTATT-CATTCATATTTTAATAATAATTATATT-AAGAATGTT
1 TTAA-ATTATATATTATTATCATTATTAAATT-ATA-TTTAATAATAATTATATTAAAGAATG-T
70941974 A
62 A
* *
70941975 TTAAATTATATATTATTATCTTTATTAAATTATATTTAATAATAATTATATTAAAGTATG-A
1 TTAAATTATATATTATTATCATTATTAAATTATATTTAATAATAATTATATTAAAGAATGTA
*
70942036 TTAAATTATTTATTATT-T-ATTATTAAATTATATTTAATAATAAT
1 TTAAATTATATATTATTATCATTATTAAATTATATTTAATAATAAT
70942080 CCTATTATAA
Statistics
Matches: 97, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
59 25 0.26
60 1 0.01
61 17 0.18
62 18 0.19
63 29 0.30
64 7 0.07
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (62 bp):
TTAAATTATATATTATTATCATTATTAAATTATATTTAATAATAATTATATTAAAGAATGTA
Found at i:70942226 original size:39 final size:40
Alignment explanation
Indices: 70942170--70942275 Score: 101
Period size: 44 Copynumber: 2.5 Consensus size: 40
70942160 TTTCCTTATG
*
70942170 CTATTACAATATC-ATTCCATTCAACCAAACA-CAAGAA-TA
1 CTATTACAGT-TCTATTCCATTCAACCAAACAGC-AGAATTA
*
70942209 CTATTACAGTTCTATTCCATTCCATTCAACCAAACAGCTGAATTA
1 CTATTACAGTTC---T--ATTCCATTCAACCAAACAGCAGAATTA
70942254 CTGATTACAGTTCTATTCCATT
1 CT-ATTACAGTTCTATTCCATT
70942276 AAAGCTCTAT
Statistics
Matches: 56, Mismatches: 2, Indels: 16
0.76 0.03 0.22
Matches are distributed among these distances:
38 2 0.04
39 9 0.16
41 8 0.14
43 1 0.02
44 21 0.38
45 5 0.09
46 10 0.18
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (40 bp):
CTATTACAGTTCTATTCCATTCAACCAAACAGCAGAATTA
Found at i:70942275 original size:46 final size:44
Alignment explanation
Indices: 70942182--70942275 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 44
70942172 ATTACAATAT
70942182 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
*
70942226 CATTCCATTCAACCAAACAGC-TGAATTACTGATTACAGTTCTATTC
1 CATTCCATTCAACCAAACA-CAAGAA-TACT-ATTACAGTTCTATTC
70942272 CATT
1 CATT
70942276 AAAGCTCTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
44 22 0.48
45 5 0.11
46 19 0.41
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.32
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
Found at i:70942284 original size:16 final size:16
Alignment explanation
Indices: 70942265--70942308 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
70942255 TGATTACAGT
70942265 TCTATTCCATTA-AAGC
1 TCTATTCCATTATAA-C
70942281 TCTATTCCATTATAAC
1 TCTATTCCATTATAAC
*
70942297 TCTATTCAATTA
1 TCTATTCCATTA
70942309 CAGCCTTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 24 0.92
17 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.02, T:0.43
Consensus pattern (16 bp):
TCTATTCCATTATAAC
Found at i:70943954 original size:23 final size:24
Alignment explanation
Indices: 70943906--70943954 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
70943896 CATGAGCAAA
* * *
70943906 AAATGTTGCGAACTGTATTTATAG
1 AAATGTCGCAAACTATATTTATAG
70943930 AAATGTCGCAAACTATA-TTATAG
1 AAATGTCGCAAACTATATTTATAG
70943953 AA
1 AA
70943955 TATTGTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (24 bp):
AAATGTCGCAAACTATATTTATAG
Found at i:70944016 original size:23 final size:22
Alignment explanation
Indices: 70943986--70944084 Score: 76
Period size: 23 Copynumber: 4.4 Consensus size: 22
70943976 AAATGTCACA
*
70943986 AATTGTATTGTAGAATTATTGCG
1 AATTGTATTGTAGAA-TATCGCG
* **
70944009 AATTGTATTGTAGAATACCATG
1 AATTGTATTGTAGAATATCGCG
*
70944031 AACTGTATT-TACAGAATTATCGCG
1 AATTGTATTGT--AGAA-TATCGCG
* *
70944055 AATTGT-TTATAGAATATTGCG
1 AATTGTATTGTAGAATATCGCG
*
70944076 AACTGTATT
1 AATTGTATT
70944085 TACATAAATG
Statistics
Matches: 60, Mismatches: 11, Indels: 11
0.73 0.13 0.13
Matches are distributed among these distances:
21 12 0.20
22 17 0.28
23 21 0.35
24 10 0.17
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.39
Consensus pattern (22 bp):
AATTGTATTGTAGAATATCGCG
Found at i:70944069 original size:45 final size:46
Alignment explanation
Indices: 70943997--70944088 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 46
70943987 ATTGTATTGT
* * *
70943997 AGAATTATTGCGAATTGTATTGTAGAATACCATGAACTGTATTTAC
1 AGAATTATCGCGAATTGTATTATAGAATACCACGAACTGTATTTAC
***
70944043 AGAATTATCGCGAATTGT-TTATAGAATATTGCGAACTGTATTTAC
1 AGAATTATCGCGAATTGTATTATAGAATACCACGAACTGTATTTAC
70944088 A
1 A
70944089 TAAATGCTGC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
45 23 0.57
46 17 0.43
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (46 bp):
AGAATTATCGCGAATTGTATTATAGAATACCACGAACTGTATTTAC
Found at i:70944180 original size:54 final size:54
Alignment explanation
Indices: 70944134--70944483 Score: 362
Period size: 54 Copynumber: 6.5 Consensus size: 54
70944124 AATCTTGTAT
* * * * *
70944134 GTAAAAGGTCTTGATCGTAAATCAGCGGACCATGAGATTCGTAAAATTTTGAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
* * *
70944188 GTAAAAGGTCGTGATCGTAAATCAGCAAACCGTGAGATTCGCAAAATCTCAAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
* * *
70944242 GTAGAAGGTCGTGATTGTAAATCAGTAGACCGTGAGATTCGTAAAATCTCGAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
* ***
70944296 GTAAAAGGTCGTGATCATAAATCAATGGACCGTGAGATTCGTAAAATCTCGAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
* * * * * * *
70944350 GTAGAAGGT-TTGATCATAAATCAACAGACTGTGAGATTAGTAAAATCTCAAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
* * * * * * * * ** *
70944403 ATAGAAGGTCGTGATTGTAAATCAACGGATCATGAAATTTATAAAAT-TTGAAAA
1 GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCG-AAA
* *
70944457 ATAGAAGGTCGTGATCGTAAATCAGCA
1 GTAAAAGGTCGTGATCGTAAATCAGCA
70944484 TGACAACCCA
Statistics
Matches: 252, Mismatches: 42, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
53 47 0.19
54 205 0.81
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (54 bp):
GTAAAAGGTCGTGATCGTAAATCAGCAGACCGTGAGATTCGTAAAATCTCGAAA
Found at i:70944422 original size:161 final size:162
Alignment explanation
Indices: 70944134--70944426 Score: 435
Period size: 161 Copynumber: 1.8 Consensus size: 162
70944124 AATCTTGTAT
* * * * *
70944134 GTAAAAGGTCTTGATCGTAAATCAGCGGACCATGAGATTCGTAAAATTTTGAAAGTAAAAGGTCG
1 GTAAAAGGTCGTGATCATAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCG
* * * *
70944199 TGATCGTAAATCAGCAAACCGTGAGATTCGCAAAATCTCAAAAGTAGAAGGTCGTGATTGTAAAT
66 TGATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAAT
70944264 CAGTAGACCGTGAGATTCGTAAAATCTCGAAA
131 CAGTAGACCGTGAGATTCGTAAAATCTCGAAA
* * * *
70944296 GTAAAAGGTCGTGATCATAAATCAATGGACCGTGAGATTCGTAAAATCTCGAAAGTAGAAGGT-T
1 GTAAAAGGTCGTGATCATAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCG
* * *
70944360 TGATCATAAATCAACAGACTGTGAGATTAGTAAAATCTCAAAAATAGAAGGTCGTGATTGTAAAT
66 TGATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAAT
70944425 CA
131 CA
70944427 ACGGATCATG
Statistics
Matches: 115, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
161 60 0.52
162 55 0.48
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (162 bp):
GTAAAAGGTCGTGATCATAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCG
TGATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAAT
CAGTAGACCGTGAGATTCGTAAAATCTCGAAA
Found at i:70944467 original size:161 final size:162
Alignment explanation
Indices: 70944135--70944480 Score: 426
Period size: 161 Copynumber: 2.1 Consensus size: 162
70944125 ATCTTGTATG
* * * *
70944135 TAAAAGGTCTTGATCGTAAATCAGCGGACCATGAGATTCGTAAAATTTTGAAAGTAAAAGGTCGT
1 TAAAAGGTCGTGATCGTAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCGT
* * * *
70944200 GATCGTAAATCAGCAAACCGTGAGATTCGCAAAATCTCAAAAGTAGAAGGTCGTGATTGTAAATC
66 GATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAATC
** * * * *
70944265 AGTAGACCGTGAGATTCGTAAAATCTCGAAAG
131 AACAGACCATGAAATTCATAAAATCTCGAAAA
* * * * *
70944297 TAAAAGGTCGTGATCATAAATCAATGGACCGTGAGATTCGTAAAATCTCGAAAGTAGAAGGT-TT
1 TAAAAGGTCGTGATCGTAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCGT
* * *
70944361 GATCATAAATCAACAGACTGTGAGATTAGTAAAATCTCAAAAATAGAAGGTCGTGATTGTAAATC
66 GATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAATC
* * * *
70944426 AACGGATCATGAAATTTATAAAAT-TTGAAAAA
131 AACAGACCATGAAATTCATAAAATCTCG-AAAA
*
70944458 TAGAAGGTCGTGATCGTAAATCA
1 TAAAAGGTCGTGATCGTAAATCA
70944481 GCATGACAAC
Statistics
Matches: 155, Mismatches: 28, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
160 2 0.01
161 99 0.64
162 54 0.35
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (162 bp):
TAAAAGGTCGTGATCGTAAATCAACGGACCATGAGATTCGTAAAATCTCGAAAGTAAAAGGTCGT
GATCATAAATCAACAAACCGTGAGATTAGCAAAATCTCAAAAATAGAAGGTCGTGATTGTAAATC
AACAGACCATGAAATTCATAAAATCTCGAAAA
Found at i:70956502 original size:93 final size:93
Alignment explanation
Indices: 70956395--70956565 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
70956385 GCCCCTAAGT
* *
70956395 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70956460 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
70956488 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70956553 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70956566 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70956562 original size:46 final size:46
Alignment explanation
Indices: 70956390--70956562 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
70956380 AACCCGCCCC
* * *
70956390 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
70956436 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
70956484 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
70956529 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70956563 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:70964452 original size:14 final size:14
Alignment explanation
Indices: 70964433--70964480 Score: 78
Period size: 14 Copynumber: 3.4 Consensus size: 14
70964423 AAATTACATG
70964433 TTAGAATAGTATCA
1 TTAGAATAGTATCA
70964447 TTAGAATAGTATCA
1 TTAGAATAGTATCA
* *
70964461 TTAGAAAAATATCA
1 TTAGAATAGTATCA
70964475 TTAGAA
1 TTAGAA
70964481 AAAAATGTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (14 bp):
TTAGAATAGTATCA
Found at i:70965725 original size:38 final size:35
Alignment explanation
Indices: 70965683--70965756 Score: 121
Period size: 38 Copynumber: 2.0 Consensus size: 35
70965673 AAAAATAACA
70965683 TGCCAATAAAAAAGATATAAAAAAAGCATAACATAAAC
1 TGCCAATAAAAAA-ATATAAAAAAA-CATAACA-AAAC
70965721 TGCCAATAAAAAAATATAAAAAAACATAACAAAAC
1 TGCCAATAAAAAAATATAAAAAAACATAACAAAAC
70965756 T
1 T
70965757 ATCTCAACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
35 5 0.14
36 7 0.19
37 11 0.31
38 13 0.36
ACGTcount: A:0.65, C:0.14, G:0.05, T:0.16
Consensus pattern (35 bp):
TGCCAATAAAAAAATATAAAAAAACATAACAAAAC
Found at i:70968275 original size:23 final size:23
Alignment explanation
Indices: 70968249--70968321 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
70968239 CTAATGGCCG
70968249 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
* * ***
70968272 ATGTGAT-AAGGCCT-AATG-GCCG
1 ATGTGATGAATG--TGAAAGTGTAT
70968294 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
70968317 ATGTG
1 ATGTG
70968322 TGATAAGGCC
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 14 0.40
23 19 0.54
24 1 0.03
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.32
Consensus pattern (23 bp):
ATGTGATGAATGTGAAAGTGTAT
Found at i:70968390 original size:92 final size:92
Alignment explanation
Indices: 70968233--70968693 Score: 697
Period size: 92 Copynumber: 5.0 Consensus size: 92
70968223 GAAATGATAG
*
70968233 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGT
*
70968298 GATGAATGTGAAAGTGTATATGTGTGA
66 GATGAATGTGAAAGTGTATATATGTGA
*
70968325 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATAGCCGATGT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGT
70968390 GATGAATGTGAAAGTGTATATATGTGA
66 GATGAATGTGAAAGTGTATATATGTGA
70968417 TAAGGCCTAATAGCCGATGTGATG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGAT
70968481 GTGATGAATGTGTGAAAGTGTATATATGTGA
64 GTGATGAA--TGTGAAAGTGTATATATGTGA
70968512 TAAGG-CTAAT-GCCGATGTGATG-A--TGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGT
70968572 GATGAATGTGAAAGTGTATATATGTGA
66 GATGAATGTGAAAGTGTATATATGTGA
* * * * * *
70968599 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA-CAGG-CGAGTGGCCAAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGAT
* * *
70968661 GTGATGGATGTGAAAGTGCATAAATGTGA
64 GTGATGAATGTGAAAGTGTATATATGTGA
70968690 TAAG
1 TAAG
70968694 TCCCGAAGGG
Statistics
Matches: 346, Mismatches: 12, Indels: 23
0.91 0.03 0.06
Matches are distributed among these distances:
87 26 0.08
88 7 0.02
89 45 0.13
91 65 0.19
92 116 0.34
93 56 0.16
94 5 0.01
95 26 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (92 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAATGGCCGATGT
GATGAATGTGAAAGTGTATATATGTGA
Found at i:70968392 original size:22 final size:22
Alignment explanation
Indices: 70968320--70968392 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
70968310 AGTGTATATG
70968320 TGTGATAAGGCCTAATAGCCGA
1 TGTGATAAGGCCTAATAGCCGA
* *** ***
70968342 TGTGATGAATGTGAAAGT-GTATA
1 TGTGAT-AAGGCCTAA-TAGCCGA
70968365 TGTGATAAGGCCTAATAGCCGA
1 TGTGATAAGGCCTAATAGCCGA
70968387 TGTGAT
1 TGTGAT
70968393 GAATGTGAAA
Statistics
Matches: 34, Mismatches: 14, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
21 1 0.03
22 19 0.56
23 13 0.38
24 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.29
Consensus pattern (22 bp):
TGTGATAAGGCCTAATAGCCGA
Found at i:70968587 original size:182 final size:185
Alignment explanation
Indices: 70968233--70968693 Score: 726
Period size: 182 Copynumber: 2.5 Consensus size: 185
70968223 GAAATGATAG
70968233 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
70968296 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA-GTGAAAGTG
70968361 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
130 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70968417 TAAGGCCTAATAGCCGATGTGATG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
70968481 GTGATGAATGTGTGAAAGTGTATATATGTGATAAGG-CTAAT-GCCGATGTGATG-A-TGAAAGT
66 GTGATGAA--TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGTGAAAGT
*
70968542 GTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
129 GTATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
70968599 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA-CAGG-CGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
70968661 GTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAG
70968694 TCCCGAAGGG
Statistics
Matches: 260, Mismatches: 12, Indels: 16
0.90 0.04 0.06
Matches are distributed among these distances:
178 23 0.09
180 15 0.06
181 5 0.02
182 105 0.40
183 11 0.04
184 24 0.09
185 47 0.18
186 5 0.02
187 25 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (185 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAGTGAAAGTGT
ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:70968677 original size:45 final size:47
Alignment explanation
Indices: 70968233--70968693 Score: 691
Period size: 47 Copynumber: 10.1 Consensus size: 47
70968223 GAAATGATAG
70968233 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70968278 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70968325 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70968370 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70968417 TAAGGCCTAATAGCCGATGTGATG-ATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70968463 TAAGGCCTAATGGCCGATGTGATGAATGTGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAA--TGTGAAAGTGTATATATGTGA
70968512 TAAGG-CTAAT-GCCGATGTGATG-A--TGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70968552 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70968599 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
70968645 -CAGG-CGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70968690 TAAG
1 TAAG
70968694 TCCCGAAGGG
Statistics
Matches: 387, Mismatches: 13, Indels: 31
0.90 0.03 0.07
Matches are distributed among these distances:
40 14 0.04
41 5 0.01
42 20 0.05
43 1 0.00
44 11 0.03
45 113 0.29
46 73 0.19
47 119 0.31
48 5 0.01
49 26 0.07
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:70968889 original size:37 final size:38
Alignment explanation
Indices: 70968810--70968889 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
70968800 CCGAGCTCTA
* * *
70968810 AAGACCCGATGACTACGTGTGGGGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGAATTATGTCCGGGT
*
70968848 AAGACCCGATAACTTCGTGTGGAG-ATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGAATTATGTCCGGGT
70968885 AAGAC
1 AAGAC
70968890 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
37 17 0.45
38 21 0.55
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (38 bp):
AAGACCCGATAACTACGTGTGGAGAATTATGTCCGGGT
Found at i:70972418 original size:79 final size:81
Alignment explanation
Indices: 70972282--70972464 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
70972272 TCGAATGATG
* *
70972282 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
70972346 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
70972361 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
70972423 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
70972441 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70972465 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:70972480 original size:40 final size:40
Alignment explanation
Indices: 70972283--70972466 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
70972273 CGAATGATGT
* * * *
70972283 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
70972323 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
70972363 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70972401 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70972442 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70972467 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70972488 original size:79 final size:79
Alignment explanation
Indices: 70972335--70972489 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
70972325 GGACTAAGAT
* **
70972335 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
70972400 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
70972414 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
70972477 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
70972490 ATTCGAAGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:70974636 original size:92 final size:93
Alignment explanation
Indices: 70974525--70974694 Score: 272
Period size: 92 Copynumber: 1.8 Consensus size: 93
70974515 GCCCCTAAGT
*
70974525 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCACATCCATAAGTGAACTCGGACTCAACTCA
70974589 ACGAGCTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
* **
70974618 GAACTC-GACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
70974682 CGAGTTCGGATGC
66 CGAGCTCGGATGC
70974695 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
92 63 0.89
93 8 0.11
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:70974686 original size:46 final size:47
Alignment explanation
Indices: 70974520--70974691 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 47
70974510 AACCCGCCCC
* *
70974520 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTACATCCA
*
70974566 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-G-C-ATTTACATCCA
* * * *
70974614 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGA-CATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTACATCCA
*
70974658 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
70974692 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 2 0.02
45 6 0.06
46 74 0.69
47 8 0.07
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTACATCCA
Found at i:70982569 original size:14 final size:14
Alignment explanation
Indices: 70982550--70982597 Score: 78
Period size: 14 Copynumber: 3.4 Consensus size: 14
70982540 AAATTACATG
70982550 TTAGAATAGTATCA
1 TTAGAATAGTATCA
70982564 TTAGAATAGTATCA
1 TTAGAATAGTATCA
* *
70982578 TTAGAAAAATATCA
1 TTAGAATAGTATCA
70982592 TTAGAA
1 TTAGAA
70982598 AAAAATGTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (14 bp):
TTAGAATAGTATCA
Found at i:70983868 original size:37 final size:38
Alignment explanation
Indices: 70983810--70983885 Score: 136
Period size: 37 Copynumber: 2.0 Consensus size: 38
70983800 AAAAATAACA
*
70983810 TGCCAATAAAAAAGATATAAAAAAAGCATAACATAAAC
1 TGCCAATAAAAAAGATATAAAAAAAACATAACATAAAC
70983848 TGCCAATAAAAAA-ATATAAAAAAAACATAACATAAAC
1 TGCCAATAAAAAAGATATAAAAAAAACATAACATAAAC
70983885 T
1 T
70983886 ATCTCAACAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 24 0.65
38 13 0.35
ACGTcount: A:0.64, C:0.13, G:0.05, T:0.17
Consensus pattern (38 bp):
TGCCAATAAAAAAGATATAAAAAAAACATAACATAAAC
Found at i:70986628 original size:27 final size:27
Alignment explanation
Indices: 70986598--70986666 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
70986588 CAATATCGTA
**
70986598 GCAAAGCTGCCAGTAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* **
70986625 GCAAAGCCACTAGTAACAGTAGTTGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
*
70986652 GCAGAGCCACCAGTA
1 GCAAAGCCACCAGTA
70986667 CATTACTTCC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTAAATGTG
Found at i:70996206 original size:31 final size:31
Alignment explanation
Indices: 70996168--70996227 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
70996158 TTTGGGTATC
* *
70996168 AAATTAAATATTGAAGTCAAACT-TAGGTACT
1 AAATTAAACATTGAAGCCAAA-TATAGGTACT
70996199 AAATTAAACATTGAAGCCAAATATAGGTA
1 AAATTAAACATTGAAGCCAAATATAGGTA
70996228 TCAAATGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 1 0.04
31 25 0.96
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.28
Consensus pattern (31 bp):
AAATTAAACATTGAAGCCAAATATAGGTACT
Found at i:70999038 original size:17 final size:17
Alignment explanation
Indices: 70999018--70999053 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
70999008 TAAAAATCAT
70999018 TAAA-ATTATTAAAAAAA
1 TAAACATTA-TAAAAAAA
70999035 TAAACATTATAAAAAAA
1 TAAACATTATAAAAAAA
70999052 TA
1 TA
70999054 TTTTAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (17 bp):
TAAACATTATAAAAAAA
Found at i:71004870 original size:24 final size:24
Alignment explanation
Indices: 71004840--71004895 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
71004830 AATATGAAAT
71004840 GTGGTATAATTAGAGTGATGGATG
1 GTGGTATAATTAGAGTGATGGATG
71004864 GTGGTATAATTAGAGTGATGGATG
1 GTGGTATAATTAGAGTGATGGATG
*
71004888 ATGGTATA
1 GTGGTATA
71004896 TTAATTTAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.34
Consensus pattern (24 bp):
GTGGTATAATTAGAGTGATGGATG
Found at i:71008427 original size:9 final size:8
Alignment explanation
Indices: 71008414--71008438 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
71008404 CATATTTTAA
71008414 ATTTTTTT
1 ATTTTTTT
71008422 ATTTTTTT
1 ATTTTTTT
71008430 ATTTTTTT
1 ATTTTTTT
71008438 A
1 A
71008439 AAATACTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (8 bp):
ATTTTTTT
Found at i:71009097 original size:23 final size:25
Alignment explanation
Indices: 71009053--71009102 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
71009043 TTAAATTAAT
*
71009053 TTAAAAAATTATCCAAATTTATCAA
1 TTAAAAAATTATCCAAATTTATAAA
71009078 TTAAAAAATCTA-CC-AA-TTATAAA
1 TTAAAAAAT-TATCCAAATTTATAAA
71009101 TT
1 TT
71009103 CCGATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 8 0.35
24 2 0.09
25 11 0.48
26 2 0.09
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (25 bp):
TTAAAAAATTATCCAAATTTATAAA
Found at i:71011974 original size:15 final size:15
Alignment explanation
Indices: 71011954--71011985 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
71011944 AAGTAACCTG
*
71011954 ATACACTTACTTTGT
1 ATACACTTACTCTGT
71011969 ATACACTTACTCTGT
1 ATACACTTACTCTGT
71011984 AT
1 AT
71011986 CTGATTAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.22, G:0.06, T:0.44
Consensus pattern (15 bp):
ATACACTTACTCTGT
Found at i:71021178 original size:22 final size:22
Alignment explanation
Indices: 71021153--71021208 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
71021143 TAGTAGTAAT
*
71021153 ATAATAACAAAATGACAACAAA
1 ATAACAACAAAATGACAACAAA
* * *
71021175 ATAACATCAAACTGACAGCAAA
1 ATAACAACAAAATGACAACAAA
* *
71021197 ACAACGACAAAA
1 ATAACAACAAAA
71021209 AAATTTAGCT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.62, C:0.20, G:0.07, T:0.11
Consensus pattern (22 bp):
ATAACAACAAAATGACAACAAA
Found at i:71028564 original size:35 final size:35
Alignment explanation
Indices: 71028514--71028582 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
71028504 CTCAATTAGG
*
71028514 GATTTCATTAGTAGTATAGATGTTAATTTTCAAAA
1 GATTTCATTAATAGTATAGATGTTAATTTTCAAAA
71028549 GATTTCATTAATAGTATAGATGTTAATTTTCAAA
1 GATTTCATTAATAGTATAGATGTTAATTTTCAAA
71028583 CACAAGATTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (35 bp):
GATTTCATTAATAGTATAGATGTTAATTTTCAAAA
Found at i:71029134 original size:17 final size:17
Alignment explanation
Indices: 71029101--71029134 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
71029091 AGTCATTTTC
*
71029101 AAATTTTTGTGAAGTCA
1 AAATTTTTATGAAGTCA
*
71029118 AAATTTTTATGAGGTCA
1 AAATTTTTATGAAGTCA
71029135 TTTTCAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41
Consensus pattern (17 bp):
AAATTTTTATGAAGTCA
Found at i:71029835 original size:10 final size:10
Alignment explanation
Indices: 71029820--71029857 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
71029810 AATTTAGCAT
71029820 TTATCTTTAA
1 TTATCTTTAA
71029830 TTATCTTTAA
1 TTATCTTTAA
*
71029840 TTAT-TTGTAT
1 TTATCTT-TAA
71029850 TTATCTTT
1 TTATCTTT
71029858 TAAAATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.66
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:71033540 original size:46 final size:45
Alignment explanation
Indices: 71033430--71033853 Score: 464
Period size: 46 Copynumber: 9.3 Consensus size: 45
71033420 CCCATCCACA
* * * * * *
71033430 GTCTTATTTATCTTC-GACATGATGCCATAGTATC-TTCAACTATA
1 GTCTTATTCAT-TTCAGTCATGTTGCCATGGTATCTTTCAACCATG
*
71033474 GTCTTACTT-ATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATG
1 GTCTTA-TTCA-TTTCAGTCATGTTGCCATGGTATCTTTCAACCATG
*
71033520 GTCTTATTCATTTCCAGTCATGTTTCCATGGTATCTTTCAACCATG
1 GTCTTATTCATTT-CAGTCATGTTGCCATGGTATCTTTCAACCATG
*
71033566 GTCTTGTTCATTTCATGTTACATG--GCCATGGTATCTTTCAACCATG
1 GTCTTATTCATTTCA-G-T-CATGTTGCCATGGTATCTTTCAACCATG
71033612 GTCTTATTCATTTTC-GTCATGTTGCCATGGTATCTTTCAACCATG
1 GTCTTATTCA-TTTCAGTCATGTTGCCATGGTATCTTTCAACCATG
* * ** *
71033657 GTCTTGTTCATTTCATGTTACATTGCCATGGTATCTTTCAACCACG
1 GTCTTATTCATTTCA-GTCATGTTGCCATGGTATCTTTCAACCATG
* * *
71033703 GTATTATTCATTTCCGTTATGTTGCCATGGTATCTTTCAACCATG
1 GTCTTATTCATTTCAGTCATGTTGCCATGGTATCTTTCAACCATG
* * ** ** *
71033748 GTCTTGTTCATTTCATGTTACATTGTGATGGTATCTTTCAACTATG
1 GTCTTATTCATTTCA-GTCATGTTGCCATGGTATCTTTCAACCATG
* *
71033794 GTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTTAACCATG
1 GTCTTATTCATTTCAGTCATGTTGCCATGGTATCTTTCAACCATG
**
71033839 GTCTTACACATTTCA
1 GTCTTATTCATTTCA
71033854 TTTCAGAAGC
Statistics
Matches: 324, Mismatches: 41, Indels: 29
0.82 0.10 0.07
Matches are distributed among these distances:
43 4 0.01
44 15 0.05
45 132 0.41
46 164 0.51
47 5 0.02
48 4 0.01
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.44
Consensus pattern (45 bp):
GTCTTATTCATTTCAGTCATGTTGCCATGGTATCTTTCAACCATG
Found at i:71033854 original size:91 final size:91
Alignment explanation
Indices: 71033496--71033843 Score: 597
Period size: 91 Copynumber: 3.8 Consensus size: 91
71033486 TTCTGTCATG
*
71033496 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCAGTCATGTTTCCATGGTATCTTTCAA
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCC-GTCATGTTGCCATGGTATCTTTCAA
71033561 CCATGGTCTTGTTCATTTCATGTTACA
65 CCATGGTCTTGTTCATTTCATGTTACA
* *
71033588 TGGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCGTCATGTTGCCATGGTATCTTTCAAC
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTCAAC
71033653 CATGGTCTTGTTCATTTCATGTTACA
66 CATGGTCTTGTTCATTTCATGTTACA
* * *
71033679 TTGCCATGGTATCTTTCAACCACGGTATTATTCATTTCCGTTATGTTGCCATGGTATCTTTCAAC
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTCAAC
71033744 CATGGTCTTGTTCATTTCATGTTACA
66 CATGGTCTTGTTCATTTCATGTTACA
** * *
71033770 TTGTGATGGTATCTTTCAACTATGGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTTAAC
1 TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTCAAC
71033835 CATGGTCTT
66 CATGGTCTT
71033844 ACACATTTCA
Statistics
Matches: 241, Mismatches: 15, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
91 204 0.85
92 37 0.15
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.44
Consensus pattern (91 bp):
TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTGTTCATTTCATGTTACA
Found at i:71035974 original size:11 final size:11
Alignment explanation
Indices: 71035958--71036005 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
71035948 CTTTATATAC
71035958 TAATAAAATAA
1 TAATAAAATAA
*
71035969 TAATAAAATATCT
1 TAATAAAATA--A
* *
71035982 TATTAAAATAT
1 TAATAAAATAA
71035993 TAATAAAATAA
1 TAATAAAATAA
71036004 TA
1 TA
71036006 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:71043302 original size:19 final size:19
Alignment explanation
Indices: 71043266--71043304 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
71043256 TTTTCATCAT
* *
71043266 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
71043285 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
71043304 A
1 A
71043305 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:71043819 original size:27 final size:27
Alignment explanation
Indices: 71043768--71043847 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
71043758 GTGACAGAGT
*
71043768 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
* *
71043797 CACCAGAACAAATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
*
71043824 CACCAAAACAGATAATTTGTGGCA
1 CACCAGAACAGAT-ATTTGTGGCA
71043848 TATCCACCAG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 22 0.50
28 15 0.34
29 7 0.16
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:71044010 original size:28 final size:28
Alignment explanation
Indices: 71043963--71044027 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
71043953 AAATTAACCC
*
71043963 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
71043991 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
71044019 TAGGGGTAT
1 TAGGGGTAT
71044028 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:71045114 original size:12 final size:13
Alignment explanation
Indices: 71045095--71045127 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
71045085 GGGTTCAGCT
71045095 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
71045108 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
71045120 ATGGAGAA
1 ATGGAGAA
71045128 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:71047895 original size:43 final size:43
Alignment explanation
Indices: 71047783--71047896 Score: 101
Period size: 44 Copynumber: 2.6 Consensus size: 43
71047773 GTGATTTTGT
* **
71047783 GTAAGACCACGTCTGGGATGTTGGCATCGATTTGAGATGTACGT
1 GTAAGACCACGTCTGGGAAGTTGGCATCGATTT-AGATGTACAC
* *
71047827 TTAAAACC-CTGTCTGGGATAG-TGGCATCGATAGTT-GAT-TACAC
1 GTAAGACCAC-GTCTGGGA-AGTTGGCATCGAT--TTAGATGTACAC
*
71047870 GTAAGACCACGTCTGGGACGTTGGCAT
1 GTAAGACCACGTCTGGGAAGTTGGCAT
71047897 TGTACGATCT
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
42 1 0.02
43 24 0.43
44 28 0.50
45 1 0.02
46 2 0.04
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGAAGTTGGCATCGATTTAGATGTACAC
Found at i:71051559 original size:24 final size:24
Alignment explanation
Indices: 71051525--71051609 Score: 84
Period size: 24 Copynumber: 3.5 Consensus size: 24
71051515 TGGGCTGTAT
*
71051525 ATCGAGAAGCTCATAAGAGCCATA
1 ATCGGGAAGCTCATAAGAGCCATA
* **
71051549 ATCAGGAAGCTCATTTGAGCCAATA
1 ATCGGGAAGCTCATAAGAGCC-ATA
*
71051574 A-CGGGTAGCTC-TGAAGAGCCATTA
1 ATCGGGAAGCTCAT-AAGAGCCA-TA
71051598 ATCGGGAAGCTC
1 ATCGGGAAGCTC
71051610 CGGATAGCCA
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
23 2 0.04
24 33 0.69
25 13 0.27
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (24 bp):
ATCGGGAAGCTCATAAGAGCCATA
Found at i:71051832 original size:25 final size:25
Alignment explanation
Indices: 71051776--71051838 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
71051766 GAAGAGCTAT
*
71051776 TAACGGGAAGCTCGAAAGAACCATA
1 TAACGGGAAGCTCGAAAGAACCAAA
* **
71051801 TAACGGGAAGCTCGAGAGGGCCAAA
1 TAACGGGAAGCTCGAAAGAACCAAA
* *
71051826 TATCGGGATGCTC
1 TAACGGGAAGCTC
71051839 ATGAGAGCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.21, G:0.30, T:0.14
Consensus pattern (25 bp):
TAACGGGAAGCTCGAAAGAACCAAA
Found at i:71052455 original size:19 final size:19
Alignment explanation
Indices: 71052433--71052471 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
71052423 TTAGTTTTTA
71052433 TAGAAAACCCATGGTTTGT
1 TAGAAAACCCATGGTTTGT
71052452 TAGAAAACCCATGGTTTGT
1 TAGAAAACCCATGGTTTGT
71052471 T
1 T
71052472 GAGTTTTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (19 bp):
TAGAAAACCCATGGTTTGT
Found at i:71053333 original size:17 final size:18
Alignment explanation
Indices: 71053300--71053334 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
71053290 ATGTGGCCTA
*
71053300 CCTGTGTGGGCCTACACG
1 CCTGTGTGGGCCCACACG
71053318 CCTGTGT-GGCCCACACG
1 CCTGTGTGGGCCCACACG
71053335 GCCCAAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.11, C:0.37, G:0.31, T:0.20
Consensus pattern (18 bp):
CCTGTGTGGGCCCACACG
Found at i:71054110 original size:8 final size:8
Alignment explanation
Indices: 71054097--71054129 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
71054087 CCCCTTTTCT
71054097 CCCACTAA
1 CCCACTAA
71054105 CCCACTAA
1 CCCACTAA
71054113 CCCACTAA
1 CCCACTAA
71054121 CCCACTAA
1 CCCACTAA
71054129 C
1 C
71054130 ACATACAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.36, C:0.52, G:0.00, T:0.12
Consensus pattern (8 bp):
CCCACTAA
Found at i:71055023 original size:13 final size:13
Alignment explanation
Indices: 71055007--71055034 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
71054997 TTTTCTTTTA
71055007 TTATTTTTCATCT
1 TTATTTTTCATCT
71055020 TTATTTTTCATCT
1 TTATTTTTCATCT
71055033 TT
1 TT
71055035 CCAATTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTTTCATCT
Found at i:71061125 original size:16 final size:18
Alignment explanation
Indices: 71061104--71061140 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
71061094 CAGTAGAATA
71061104 AGAAG-AGAAAAAAAA-G
1 AGAAGAAGAAAAAAAATG
71061120 AGAAGAAGAAAAAAAATG
1 AGAAGAAGAAAAAAAATG
71061138 AGA
1 AGA
71061141 TGCATGGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 10 0.53
18 4 0.21
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (18 bp):
AGAAGAAGAAAAAAAATG
Found at i:71061127 original size:19 final size:18
Alignment explanation
Indices: 71061103--71061140 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
71061093 ACAGTAGAAT
71061103 AAGAAGAGAAAAAAAAGAG
1 AAGAAGA-AAAAAAAAGAG
*
71061122 AAGAAGAAAAAAAATGAG
1 AAGAAGAAAAAAAAAGAG
71061140 A
1 A
71061141 TGCATGGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.03
Consensus pattern (18 bp):
AAGAAGAAAAAAAAAGAG
Found at i:71065012 original size:16 final size:16
Alignment explanation
Indices: 71064991--71065047 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
71064981 TTTGGTTCGC
*
71064991 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
71065007 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
71065023 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
71065039 TGTAATGGA
1 TGTAATGGA
71065048 AAAGCTGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:71065314 original size:18 final size:17
Alignment explanation
Indices: 71065293--71065327 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
71065283 TTATTATTAA
*
71065293 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
71065311 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
71065328 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:71065464 original size:16 final size:16
Alignment explanation
Indices: 71065427--71065468 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
71065417 TTAATCATAT
*
71065427 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
71065443 TT-AAATATATTATAA
1 TTAAAATATATTATAA
71065458 TTAAAATATAT
1 TTAAAATATAT
71065469 AATTTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:71065466 original size:154 final size:156
Alignment explanation
Indices: 71065180--71065477 Score: 546
Period size: 154 Copynumber: 1.9 Consensus size: 156
71065170 TAGAATACCC
71065180 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-TA
*
71065245 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
65 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
71065310 TATATAATTTAATAAAATTCTTAATAA
130 TATATAATTTAATAAAATTCTTAATAA
* *
71065337 TTAGCATAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTA-A-
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
71065400 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
66 TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
71065465 ATATAATTTAATA
131 ATATAATTTAATA
71065478 TGAATTTACT
Statistics
Matches: 138, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
154 77 0.56
155 1 0.01
157 60 0.43
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATAT
TATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
ATATAATTTAATAAAATTCTTAATAA
Found at i:71065475 original size:14 final size:15
Alignment explanation
Indices: 71065436--71065570 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
71065426 TTTAAACATA
*
71065436 ATTATTATTAAATAT
1 ATTATAATTAAATAT
71065451 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
71065465 A-TATAATTTAATAT
1 ATTATAATTAAATAT
*
71065479 GAATTTACTCAAATCATAATAT
1 --A-TTA-T--AATTA-AATAT
* *
71065501 ATGATACTGTAAA-AT
1 ATTATAAT-TAAATAT
71065516 A-TA-AATTAACATA-
1 ATTATAATTAA-ATAT
*
71065529 ATTATTATTAAATAT
1 ATTATAATTAAATAT
71065544 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
71065558 A-TATAATTTAATA
1 ATTATAATTAAATA
71065571 AAATTCTTAA
Statistics
Matches: 92, Mismatches: 12, Indels: 33
0.67 0.09 0.24
Matches are distributed among these distances:
12 3 0.03
13 22 0.24
14 16 0.17
15 30 0.33
16 5 0.05
17 1 0.01
18 3 0.03
19 3 0.03
20 1 0.01
21 3 0.03
22 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:71065534 original size:154 final size:155
Alignment explanation
Indices: 71065219--71065534 Score: 401
Period size: 154 Copynumber: 2.0 Consensus size: 155
71065209 ATTGTTATTG
71065219 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTA-TATTATCAATAATAAATAATTTAATCATATTTAAACATAAT
* *
71065284 TATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCATAAATT
65 TATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA-TAGCATAAATA
** * * *** **
71065349 TGTTTTGGTAAATTATTATTGTTATTG
129 TGTACTGGTAAAATATAATTAACATAA
71065376 TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAACATAATT
1 TTATTTAAATTTTAATAAGATTATATTATCAATAATAAATAATTTAATCATATTTAAACATAATT
* * *
71065439 ATTATTAAATATATTATAATTAAAATATATAATTTAATATGAA-T-TTACTCAA-ATCATAATAT
66 ATTATTAAATATATTATAATTAAAATATATAATTTAATA-AAATTCTTAAT-AATAGCATAA-AT
71065501 ATGATACT-GTAAAATATAAATTAACATAA
128 ATG-TACTGGTAAAATAT-AATTAACATAA
71065530 TTATT
1 TTATT
71065535 ATTAAATATA
Statistics
Matches: 140, Mismatches: 14, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
152 6 0.04
153 16 0.11
154 92 0.66
155 3 0.02
157 23 0.16
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (155 bp):
TTATTTAAATTTTAATAAGATTATATTATCAATAATAAATAATTTAATCATATTTAAACATAATT
ATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATAGCATAAATATG
TACTGGTAAAATATAATTAACATAA
Found at i:71065585 original size:44 final size:43
Alignment explanation
Indices: 71065496--71065586 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
71065486 CTCAAATCAT
* * *
71065496 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
* * *
71065539 AATATATTATAAT-TAAAATATATAATTTAATAAAATTCTTAATA
1 AATATATGATAATGTAAAATATA-AA-TTAACAAAATTATTAATA
71065583 AATA
1 AATA
71065587 AAATTCTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.22
43 13 0.32
44 18 0.45
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (43 bp):
AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
Found at i:71065611 original size:120 final size:119
Alignment explanation
Indices: 71065476--71065694 Score: 345
Period size: 120 Copynumber: 1.8 Consensus size: 119
71065466 TATAATTTAA
* * *
71065476 TATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-TT-AACATAATTATTATTA
1 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATTTCAA-ATAATTAATATTA
71065539 AATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
64 AATATGATT-TAATT-AAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
71065596 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
1 TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
*
71065661 TATGATTTAATTAAATATATGATTTAATAAAATT
66 TATGATTTAATTAAATATATAATTTAATAAAATT
71065695 TAAAATTATT
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
119 24 0.26
120 63 0.68
121 5 0.05
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (119 bp):
TATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTCAAATAATTAATATTAAA
TATGATTTAATTAAATATATAATTTAATAAAATTCTTAATAAATAAAATTCTTC
Found at i:71065675 original size:15 final size:15
Alignment explanation
Indices: 71065655--71065693 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
71065645 AATAATTAAT
71065655 ATTAAATATGATTTA
1 ATTAAATATGATTTA
71065670 ATTAAATATATGATTTA
1 ATT-AA-ATATGATTTA
*
71065687 ATAAAAT
1 ATTAAAT
71065694 TTAAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.24
16 4 0.19
17 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (15 bp):
ATTAAATATGATTTA
Found at i:71065680 original size:17 final size:17
Alignment explanation
Indices: 71065660--71065693 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
71065650 TTAATATTAA
*
71065660 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
71065677 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
71065694 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:71065836 original size:93 final size:92
Alignment explanation
Indices: 71065726--71065920 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
71065716 GATTATAGTT
* * *
71065726 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
71065789 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
71065819 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
71065884 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
71065911 TATGAATTTA
1 TATGAATTTA
71065921 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:71067334 original size:11 final size:11
Alignment explanation
Indices: 71067320--71067346 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
71067310 AAAAATCAAT
71067320 ACAAAAGTTTC
1 ACAAAAGTTTC
71067331 ACAAAAGTTTC
1 ACAAAAGTTTC
71067342 ACAAA
1 ACAAA
71067347 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:71069610 original size:15 final size:15
Alignment explanation
Indices: 71069590--71069620 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
71069580 ATATTATGTA
71069590 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
71069605 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
71069620 T
1 T
71069621 TGAAGGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (15 bp):
TAATTGAGGTAAAAT
Found at i:71079658 original size:21 final size:21
Alignment explanation
Indices: 71079634--71079684 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
71079624 TTAATTTGTG
71079634 TATTGTTTTAAGAATTATTTT
1 TATTGTTTTAAGAATTATTTT
* * * *
71079655 TATTTATTTTAATATTTGTTTT
1 TA-TTGTTTTAAGAATTATTTT
71079677 TA-TGTTTT
1 TATTGTTTT
71079685 TAAATATATT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 5 0.21
21 2 0.08
22 17 0.71
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.69
Consensus pattern (21 bp):
TATTGTTTTAAGAATTATTTT
Found at i:71079683 original size:42 final size:42
Alignment explanation
Indices: 71079604--71079716 Score: 108
Period size: 41 Copynumber: 2.6 Consensus size: 42
71079594 TTTTTAATAT
71079604 AATTATTTTTTATTATATTGTTAATTTGTGTATTGTTTTAAG
1 AATTATTTTTTATTATATTGTTAATTTGTGTATTGTTTTAAG
* * *
71079646 AATTA-TTTTTATT-TATT-TTAATATTTGTTTTTATGTTTTTA-
1 AATTATTTTTTATTATATTGTT-A-ATTTGTGTAT-TGTTTTAAG
*
71079687 AATATATTTGATTTATTATATTTTTAATTT
1 AAT-TATTT--TTTATTATATTGTTAATTT
71079717 TTTTATTTAA
Statistics
Matches: 59, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
39 2 0.03
40 5 0.08
41 19 0.32
42 14 0.24
43 2 0.03
45 10 0.17
46 5 0.08
47 2 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.65
Consensus pattern (42 bp):
AATTATTTTTTATTATATTGTTAATTTGTGTATTGTTTTAAG
Found at i:71079705 original size:26 final size:24
Alignment explanation
Indices: 71079666--71079713 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
71079656 ATTTATTTTA
*
71079666 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
71079690 ATATTTGATTTATTATATTTTTAA
1 ATATTTG-TTT-TTATATTTTTAA
71079714 TTTTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:71079718 original size:41 final size:39
Alignment explanation
Indices: 71079559--71079718 Score: 106
Period size: 44 Copynumber: 3.8 Consensus size: 39
71079549 ATTATATATT
* **
71079559 AATATATTTTTTATTTTATTTTTAATCCTTTTAAATTTTTA
1 AATATATTTTTTATTATATTTTTAAT--TTTTATGTTTTTA
* *
71079600 ATATAATTATTTTTTATTATATTGTTAATTTGTGTATTGTTTTAA
1 A-AT-A-TATTTTTTATTATATTTTTAATTT-T-TA-TGTTTTTA
* * * *
71079645 GAATTATTTTTATTTATTTTAATATTT-GTTTTTATGTTTTTA
1 -AA-TATATTT-TTTATTAT-ATTTTTAATTTTTATGTTTTTA
71079687 AATATATTTGATTTATTATATTTTTAATTTTT
1 AATATATTT--TTTATTATATTTTTAATTTTT
71079719 TTATTTAATG
Statistics
Matches: 92, Mismatches: 15, Indels: 24
0.70 0.11 0.18
Matches are distributed among these distances:
40 11 0.12
41 16 0.17
42 11 0.12
43 4 0.04
44 27 0.29
45 17 0.18
46 6 0.07
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.66
Consensus pattern (39 bp):
AATATATTTTTTATTATATTTTTAATTTTTATGTTTTTA
Found at i:71079976 original size:20 final size:20
Alignment explanation
Indices: 71079947--71080016 Score: 113
Period size: 20 Copynumber: 3.5 Consensus size: 20
71079937 CTGTACCTAG
*
71079947 GAAAATTTTTGAAATTTTGC
1 GAAAAATTTTGAAATTTTGC
* *
71079967 AAAAAATTTTGAAATTTTAC
1 GAAAAATTTTGAAATTTTGC
71079987 GAAAAATTTTGAAATTTTGC
1 GAAAAATTTTGAAATTTTGC
71080007 GAAAAATTTT
1 GAAAAATTTT
71080017 TTAAGTTCCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.41
Consensus pattern (20 bp):
GAAAAATTTTGAAATTTTGC
Found at i:71080526 original size:3 final size:3
Alignment explanation
Indices: 71080518--71080586 Score: 70
Period size: 3 Copynumber: 23.3 Consensus size: 3
71080508 TCTCCATTTT
* *
71080518 TTC TTC TTC TCC TTC -TC GTTC TTC TTT TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * *
71080563 TTT TTC TTT TTC -TC TTC TTA TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
71080587 ACTACATAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
2 4 0.08
3 47 0.89
4 2 0.04
ACGTcount: A:0.01, C:0.29, G:0.01, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:71080969 original size:2 final size:2
Alignment explanation
Indices: 71080962--71081000 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
71080952 TTGGAGTTTT
* * *
71080962 TA TA TA TA TC TA TA TC TA TA TC TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
71081001 GTGTATTCTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:71080983 original size:12 final size:12
Alignment explanation
Indices: 71080962--71081000 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
71080952 TTGGAGTTTT
71080962 TATATATATCTA
1 TATATATATCTA
*
71080974 TATCTATATCTA
1 TATATATATCTA
*
71080986 TATATATATATA
1 TATATATATCTA
71080998 TAT
1 TAT
71081001 GTGTATTCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (12 bp):
TATATATATCTA
Found at i:71083784 original size:19 final size:19
Alignment explanation
Indices: 71083760--71083823 Score: 71
Period size: 18 Copynumber: 3.5 Consensus size: 19
71083750 GAAACTAAAG
71083760 AAAAATCATTAAAA-TTCAA
1 AAAAATCATTAAAACTT-AA
71083779 AAAAATCATTAAAACTT-A
1 AAAAATCATTAAAACTTAA
* *
71083797 AAAAATTATAAAAAC-TAA
1 AAAAATCATTAAAACTTAA
*
71083815 AAGAATCAT
1 AAAAATCAT
71083824 AATCTGTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
17 1 0.03
18 22 0.56
19 14 0.36
20 2 0.05
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAAATCATTAAAACTTAA
Found at i:71084049 original size:17 final size:18
Alignment explanation
Indices: 71084015--71084052 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
71084005 TAAATATAGA
* *
71084015 TTATAATTTTTTTTAGTT
1 TTATAATTTTTCTAAGTT
71084033 TTATAA-TTTTCTAAGTT
1 TTATAATTTTTCTAAGTT
71084050 TTA
1 TTA
71084053 GTATTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (18 bp):
TTATAATTTTTCTAAGTT
Found at i:71084552 original size:11 final size:11
Alignment explanation
Indices: 71084538--71084589 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
71084528 TCTTTCAATA
71084538 TTCTCTCAAAT
1 TTCTCTCAAAT
71084549 TTCTCTCAAA-
1 TTCTCTCAAAT
71084559 -TCTCTCAAAT
1 TTCTCTCAAAT
*
71084569 TTCTCTTAAAT
1 TTCTCTCAAAT
*
71084580 TCCTCTCAAA
1 TTCTCTCAAA
71084590 ACTCTCGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:71084564 original size:20 final size:21
Alignment explanation
Indices: 71084532--71084589 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 21
71084522 CTTCAATCTT
71084532 TCAATATTCTCTCAAATTTCTC
1 TCAA-ATTCTCTCAAATTTCTC
71084554 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTTCTC
*
71084574 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
71084590 ACTCTCGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 19 0.58
21 2 0.06
22 12 0.36
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTTCTC
Found at i:71084646 original size:16 final size:15
Alignment explanation
Indices: 71084617--71084647 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
71084607 TCAAAAAAGC
*
71084617 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
71084632 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
71084647 T
1 T
71084648 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:71086408 original size:18 final size:18
Alignment explanation
Indices: 71086385--71086427 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
71086375 TGCCAGGTAC
*
71086385 GTATCCTAGCCCTTTTAT
1 GTATCCTAGCCCTTATAT
71086403 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
*
71086421 GTTTCCT
1 GTATCCT
71086428 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:71087016 original size:116 final size:116
Alignment explanation
Indices: 71086812--71087658 Score: 1532
Period size: 116 Copynumber: 7.3 Consensus size: 116
71086802 TATTTGTACA
*
71086812 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
71086877 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
71086928 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
71086993 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
71087044 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGATTGTTCTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
71087109 TGTAATCTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGAC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
71087160 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
71087225 TGTAATCTACTTTTATATTTTTAATAAAATAGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
71087276 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
71087341 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
71087392 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
71087457 TGTAATTTACTTTTATATTTTTAATAAAATAGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* * * *
71087508 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAATGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* * * *
71087573 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAACTAAAGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
71087624 AATATTTTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAAT
71087659 AAAATATAAA
Statistics
Matches: 706, Mismatches: 25, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
116 706 1.00
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:71091208 original size:126 final size:126
Alignment explanation
Indices: 71090677--71091200 Score: 807
Period size: 126 Copynumber: 4.2 Consensus size: 126
71090667 GAAACCACTA
71090677 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
* ** * *
71090742 GCGTTTTTGATACTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTTAGAGACCACTG
66 GCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
* * * * * *
71090803 TAGCAAAAGAGCATCCACATGGGAGCTTCTTCCAGTAATTTTTCTGAAAATGCATCCTACTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
*
71090868 GCGTTTTT-ACCACTATTTGCGCAGACACGTCTTCTTAAAATTATTTTTTCAGAGACTACTG
66 GCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
* * *
71090929 TAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGTTGACAATGCATCCTGCTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
* * * * * *
71090994 GCATTTTTTACACTATTTGCACAAACACGTCTTCTCAAAATTATTTTTTCAAATACTACTG
66 GCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
*
71091055 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCTTGAA
1 TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
*
71091120 GCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAATTTATTTTTTCAGAGACTACTG
66 GCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
* *
71091181 TAGTAAAAAAGCGTCCACGT
1 TAGCAAAAGAGCGTCCACGT
71091201 AGAAGCTTTT
Statistics
Matches: 358, Mismatches: 38, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
125 1 0.00
126 356 0.99
127 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.34
Consensus pattern (126 bp):
TAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCTTGAA
GCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACTACTG
Found at i:71091455 original size:95 final size:98
Alignment explanation
Indices: 71091285--71091493 Score: 266
Period size: 95 Copynumber: 2.2 Consensus size: 98
71091275 TTCTTAAATA
* * *
71091285 CCTTAAAACCCTAAACCCTAAAATCCTAATCTAATTTTTTTAAAATTTATAATTAATTTACTCAA
1 CCTTAAAACCATAAACACTAAAATCCTAATCTAATTTTTTTAAAATTTATAATTAATTTAATCAA
** * *
71091350 GTAACCCTAAACCCTAATTTATTTGA-TTTTTT
66 CAAACACTAAACCCTAATTTATTTAATTTTTTT
* *
71091382 CCTTAAAACCATAATCACT-AAA-CCATAATCTAA-TTTTTTAAAA-TTAGTAATTAATTTAATT
1 CCTTAAAACCATAAACACTAAAATCC-TAATCTAATTTTTTTAAAATTTA-TAATTAATTTAATC
71091443 AACAAACACTAAACCCTAATTTATTTAATTTTTTTT
64 AACAAACACTAAACCCTAATTTATTTAA-TTTTTTT
*
71091479 CCTTAAAACCCTAAA
1 CCTTAAAACCATAAA
71091494 ATTTAAAAAC
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
94 3 0.03
95 48 0.49
96 11 0.11
97 35 0.36
ACGTcount: A:0.40, C:0.19, G:0.01, T:0.40
Consensus pattern (98 bp):
CCTTAAAACCATAAACACTAAAATCCTAATCTAATTTTTTTAAAATTTATAATTAATTTAATCAA
CAAACACTAAACCCTAATTTATTTAATTTTTTT
Found at i:71108210 original size:23 final size:23
Alignment explanation
Indices: 71108179--71108233 Score: 101
Period size: 23 Copynumber: 2.3 Consensus size: 23
71108169 GTGATTAAAT
71108179 AATTGAAGTTCAAAATGAAAATTA
1 AATT-AAGTTCAAAATGAAAATTA
71108203 AATTAAGTTCAAAATGAAAATTA
1 AATTAAGTTCAAAATGAAAATTA
71108226 AATTAAGT
1 AATTAAGT
71108234 CATCATAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 27 0.87
24 4 0.13
ACGTcount: A:0.55, C:0.04, G:0.11, T:0.31
Consensus pattern (23 bp):
AATTAAGTTCAAAATGAAAATTA
Found at i:71110470 original size:12 final size:12
Alignment explanation
Indices: 71110453--71110479 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
71110443 TTCTGTTCTT
71110453 CTTTGGATGATG
1 CTTTGGATGATG
71110465 CTTTGGATGATG
1 CTTTGGATGATG
71110477 CTT
1 CTT
71110480 GGTAAGCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.11, G:0.30, T:0.44
Consensus pattern (12 bp):
CTTTGGATGATG
Found at i:71111289 original size:69 final size:68
Alignment explanation
Indices: 71111190--71111350 Score: 232
Period size: 69 Copynumber: 2.3 Consensus size: 68
71111180 AAAAATGTAG
* * * *
71111190 AAGACCATAGTTGGACCATGGCAAAGTTTACGTAAGACCATAATTGGGCTATGGCAATTTTTTAT
1 AAGACCATGGTTGGACCATGG-AAAATTTACGTAAGACCATAACTGGGCTATGGCAATTTTTCAT
71111255 ACGC
65 ACGC
* *
71111259 AAGAACATGGTTGGACCATGGAAATATTTACGTAAGACCATAGCTGGGCTATGGCAATTTTTCAT
1 AAGACCATGGTTGGACCATGGAAA-ATTTACGTAAGACCATAACTGGGCTATGGCAATTTTTCAT
*
71111324 ACGT
65 ACGC
*
71111328 AAGACCATGGTTGGAACATGGAA
1 AAGACCATGGTTGGACCATGGAA
71111351 GTGTATATAT
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
68 3 0.04
69 79 0.96
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (68 bp):
AAGACCATGGTTGGACCATGGAAAATTTACGTAAGACCATAACTGGGCTATGGCAATTTTTCATA
CGC
Found at i:71111334 original size:36 final size:35
Alignment explanation
Indices: 71111190--71111341 Score: 132
Period size: 33 Copynumber: 4.4 Consensus size: 35
71111180 AAAAATGTAG
* * **
71111190 AAGACCATAGTTGGACCATGGCAA-AGTT-TACGT
1 AAGACCATAGTTGGGCTATGGCAATTTTTATACGT
* *
71111223 AAGACCATAATTGGGCTATGGCAATTTTTTATACGC
1 AAGACCATAGTTGGGCTATGGCAA-TTTTTATACGT
* * * * * *
71111259 AAGAACATGGTTGGACCATGG-AAATATT-TACGT
1 AAGACCATAGTTGGGCTATGGCAATTTTTATACGT
*
71111292 AAGACCATAGCTGGGCTATGGCAATTTTTCATACGT
1 AAGACCATAGTTGGGCTATGGCAATTTTT-ATACGT
*
71111328 AAGACCATGGTTGG
1 AAGACCATAGTTGG
71111342 AACATGGAAG
Statistics
Matches: 90, Mismatches: 23, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
33 41 0.46
34 8 0.09
35 4 0.04
36 37 0.41
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (35 bp):
AAGACCATAGTTGGGCTATGGCAATTTTTATACGT
Found at i:71113106 original size:22 final size:22
Alignment explanation
Indices: 71113078--71113130 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
71113068 AAATGATAAG
*
71113078 TTTTAGCATGTATGCATGTAAC
1 TTTTAGCATGTATGCACGTAAC
71113100 TTTTAGCATGTATGCACGTAAC
1 TTTTAGCATGTATGCACGTAAC
71113122 TTTTAGCAT
1 TTTTAGCAT
71113131 ATTAAACTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (22 bp):
TTTTAGCATGTATGCACGTAAC
Found at i:71119233 original size:42 final size:42
Alignment explanation
Indices: 71119180--71119277 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
71119170 CACGACCAAA
* * * *
71119180 ACACACGCCCGTGTTCCAGGCCGTGTGGCACATACGACTGAG
1 ACACACGCCCGTGTTCCAAGCCATGTGGCACACACGAATGAG
* *
71119222 ACACACCCCCGTGTTCCAAGCTATGTGGCACACACGAATGAG
1 ACACACGCCCGTGTTCCAAGCCATGTGGCACACACGAATGAG
*
71119264 ACACATGCCCGTGT
1 ACACACGCCCGTGT
71119278 CTCTGCCCAT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.17
Consensus pattern (42 bp):
ACACACGCCCGTGTTCCAAGCCATGTGGCACACACGAATGAG
Found at i:71120385 original size:20 final size:21
Alignment explanation
Indices: 71120351--71120391 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
71120341 GCAGGGGAAG
71120351 GAAAGAAAGAAAAAGAGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
*
71120372 GAAAGAAA-AAAAAGGGAAAA
1 GAAAGAAAGAAAAAGAGAAAA
71120392 TCAAAGATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (21 bp):
GAAAGAAAGAAAAAGAGAAAA
Found at i:71120397 original size:21 final size:21
Alignment explanation
Indices: 71120352--71120398 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
71120342 CAGGGGAAGG
*
71120352 AAAGAAAGAAAAAGAGAAAAG
1 AAAGAAAGAAAAAGAGAAAAC
*
71120373 AAAGAAA-AAAAAGGGAAAATC
1 AAAGAAAGAAAAAGAGAAAA-C
71120394 AAAGA
1 AAAGA
71120399 TGTGAAGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.02
Consensus pattern (21 bp):
AAAGAAAGAAAAAGAGAAAAC
Found at i:71120479 original size:40 final size:40
Alignment explanation
Indices: 71120424--71120505 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
71120414 TTTAATAGGT
71120424 AAGTCAATTGAGCCCTTTTTACTTAATTTTGATATTTTAG
1 AAGTCAATTGAGCCCTTTTTACTTAATTTTGATATTTTAG
71120464 AAGTCAATTGAGCCCTTTTTACTTAATTTTGATATTTTAG
1 AAGTCAATTGAGCCCTTTTTACTTAATTTTGATATTTTAG
71120504 AA
1 AA
71120506 ACTTTGGACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.46
Consensus pattern (40 bp):
AAGTCAATTGAGCCCTTTTTACTTAATTTTGATATTTTAG
Found at i:71122413 original size:46 final size:46
Alignment explanation
Indices: 71122362--71122589 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
71122352 AGTGTGCTCT
*
71122362 CTGATATGAAATGTGTAAGATCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
71122408 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
71122454 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * *
71122500 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACAATGGTAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
71122546 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
71122590 TCATGTCAAA
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 165 0.99
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:71134394 original size:22 final size:23
Alignment explanation
Indices: 71134368--71134413 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
71134358 CAACCAAACC
71134368 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
71134390 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
71134413 A
1 A
71134414 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:71134419 original size:23 final size:23
Alignment explanation
Indices: 71134375--71134419 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
71134365 ACCAATTCAA
*
71134375 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
71134398 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
71134420 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:71151077 original size:21 final size:20
Alignment explanation
Indices: 71151053--71151100 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
71151043 ATAAACATTC
*
71151053 TATTATTTTAATAAGATTTAA
1 TATTAATTTAATAA-ATTTAA
*
71151074 TATTTAATTTAATTAATTTAA
1 TA-TTAATTTAATAAATTTAA
71151095 TATTAA
1 TATTAA
71151101 AGTGATTGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 4 0.17
21 10 0.42
22 10 0.42
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
TATTAATTTAATAAATTTAA
Found at i:71153216 original size:42 final size:43
Alignment explanation
Indices: 71153112--71153268 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
71153102 TGTGATTTTG
** * * *
71153112 TGTAAGACCACGTCTGGGAC-GTTGGCATCGATTTAAGATTTACG
1 TGTAAGACCATATCTGGGACAG-TGGCATCGATATATGA-TTACA
* * * *
71153156 TGTAAGACCATGTCTGGGATATTGGCATCG-TATATGATTCCA
1 TGTAAGACCATATCTGGGACAGTGGCATCGATATATGATTACA
* * *
71153198 TGTAAGACCCTATTTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATATCTGGGACAGTGGCATCGATATATGATTACA
*
71153241 TGTAAGACCATGTCTGGGAC-GTTGGCAT
1 TGTAAGACCATATCTGGGACAG-TGGCAT
71153269 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 29 0.31
43 38 0.41
44 26 0.28
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACAGTGGCATCGATATATGATTACA
Found at i:71156387 original size:48 final size:47
Alignment explanation
Indices: 71156335--71156428 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 47
71156325 GTCAACTCTG
* * *
71156335 ATTAAATTTGATTTTTTAAATAATTTT-AATAATATAAAATTTAAATTA
1 ATTAAATTTAAATTTTTAAAT--TTTTGAATAATATAAAAATTAAATTA
*
71156383 ATTAAATTTAAATTTTTAAATTTTTGAATCATATAAAAATTAAATT
1 ATTAAATTTAAATTTTTAAATTTTTGAATAATATAAAAATTAAATT
71156429 TGACTTTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
46 4 0.10
47 18 0.44
48 19 0.46
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (47 bp):
ATTAAATTTAAATTTTTAAATTTTTGAATAATATAAAAATTAAATTA
Found at i:71156403 original size:14 final size:15
Alignment explanation
Indices: 71156371--71156405 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
71156361 TAATAATATA
71156371 AAATTTAAATTAATT
1 AAATTTAAATTAATT
*
71156386 AAATTTAAATT-TTT
1 AAATTTAAATTAATT
71156400 AAATTT
1 AAATTT
71156406 TTGAATCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AAATTTAAATTAATT
Found at i:71156424 original size:38 final size:39
Alignment explanation
Indices: 71156382--71156466 Score: 118
Period size: 39 Copynumber: 2.2 Consensus size: 39
71156372 AATTTAAATT
71156382 AATTAAATTTAAATTTTTAAAT-TTTTGAATCATATAAA
1 AATTAAATTTAAATTTTTAAATCTTTTGAATCATATAAA
* * * * *
71156420 AATTAAATTTGACTTTTTTAATCTTTTTAATGATATAAA
1 AATTAAATTTAAATTTTTAAATCTTTTGAATCATATAAA
71156459 AATTAAAT
1 AATTAAAT
71156467 CCATCCATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
38 19 0.46
39 22 0.54
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (39 bp):
AATTAAATTTAAATTTTTAAATCTTTTGAATCATATAAA
Found at i:71158256 original size:18 final size:18
Alignment explanation
Indices: 71158233--71158271 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
71158223 TTGGCGGCCC
*
71158233 TGGTGGATCACGCTTCTT
1 TGGTGGATCAAGCTTCTT
*
71158251 TGGTGGATCAAGTTTCTT
1 TGGTGGATCAAGCTTCTT
71158269 TGG
1 TGG
71158272 CTTTGATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.15, G:0.31, T:0.41
Consensus pattern (18 bp):
TGGTGGATCAAGCTTCTT
Found at i:71165050 original size:9 final size:9
Alignment explanation
Indices: 71165036--71165062 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
71165026 CTATCCCTAT
71165036 AAAATAATA
1 AAAATAATA
71165045 AAAATAATA
1 AAAATAATA
71165054 AAAATAATA
1 AAAATAATA
71165063 GTATAAGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAATAATA
Found at i:71166807 original size:355 final size:355
Alignment explanation
Indices: 71166156--71168642 Score: 4920
Period size: 355 Copynumber: 7.0 Consensus size: 355
71166146 CCAATTTAAC
71166156 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
1 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
71166221 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
66 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
71166286 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
131 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
71166351 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
196 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
71166416 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
261 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
71166481 AATTAATGCACACAAAAATCAAAATCGACT
326 AATTAATGCACACAAAAATCAAAATCGACT
71166511 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
1 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
71166576 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
66 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
71166641 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
131 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
71166706 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
196 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
71166771 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
261 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
71166836 AATTAATGCACACAAAAATCAAAATCGACT
326 AATTAATGCACACAAAAATCAAAATCGACT
71166866 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
1 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
*
71166931 AACCATAAATAACTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
66 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
71166996 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
131 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
71167061 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
196 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
71167126 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
261 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
71167191 AATTAATGCACACAAAAATCAAAATCGACT
326 AATTAATGCACACAAAAATCAAAATCGACT
71167221 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
1 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
71167286 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
66 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
71167351 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
131 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
71167416 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
196 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
71167481 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
261 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
71167546 AATTAATGCACACAAAAATCAAAATCGACT
326 AATTAATGCACACAAAAATCAAAATCGACT
*
71167576 TTTAATTTCACACTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
1 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
*
71167641 AACCATAAATAGCTCAAATTAATAGGATCATACTTAAAATAAACATATAATTAATAAATAAAAAT
66 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
*
71167706 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCGTGCTTGCCCTCAAATATGGTTCC
131 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
71167771 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
196 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
71167836 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAAGTATTC
261 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTG-AAAAAGTATTC
71167901 CAATTAATGCACACAAAAATCAAAATCGACT
325 CAATTAATGCACACAAAAATCAAAATCGACT
71167932 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
1 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
71167997 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
66 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
*
71168062 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCT
131 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
71168127 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
196 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
71168192 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
261 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
71168257 AATTAATGCACACAAAAATCAAAATCGACT
326 AATTAATGCACACAAAAATCAAAATCGACT
71168287 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
1 TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
71168352 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
66 AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
71168417 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
131 ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
71168482 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
196 TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
71168547 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
261 GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
71168612 AATTAATGCACACAAAAATCAAAATCGACT
326 AATTAATGCACACAAAAATCAAAATCGACT
71168642 T
1 T
71168643 GGATTGTTTC
Statistics
Matches: 2121, Mismatches: 10, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
355 1770 0.83
356 351 0.17
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (355 bp):
TTTAATTTCACGCTTTTAGCCCCCAAATTTCATTTTACCTCCAATTTAGTCCCTATAAGATAAAA
AACCATAAATAGCTCAAATTAATAGGATCATACTCAAAATAAACATATAATTAATAAATAAAAAT
ATGTCATCCTAGAGTATTATCAAATTCCCCCTACTTAGCCCATGCTTGCCCTCAAATATGGTTCC
TAACCACTGTGAAATTTAGATCTTGCCATGAAAGAAATACTACTCCAAAGTTTTATAACAAGTAG
GTATAATGCATGTGAAAAATAAAGAGAACCTTAACTTGCTTTAAGTAAAACTGAAAAAGTATTCC
AATTAATGCACACAAAAATCAAAATCGACT
Found at i:71168766 original size:17 final size:15
Alignment explanation
Indices: 71168744--71168788 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
71168734 AATACATCAC
71168744 TTTTTTTCTTTTTCT
1 TTTTTTTCTTTTTCT
*
71168759 AATTTTTTCTTTTTTCT
1 -TTTTTTTC-TTTTTCT
71168776 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
71168789 ATCATTATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 5 0.19
16 14 0.54
17 7 0.27
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTCTTTTTCT
Found at i:71168980 original size:99 final size:99
Alignment explanation
Indices: 71168808--71168991 Score: 260
Period size: 99 Copynumber: 1.9 Consensus size: 99
71168798 GTTATTATTG
* * * * * *
71168808 CTTAAGAATATATTGAATCTTTTGACGCGAAGAGAGATAACAGCCAAGCACCCCACCCCGATTAC
1 CTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCACCCCAATTAC
71168873 TCAACCCAACATACTCCTAATTTACTATATTTTT
66 TCAACCCAACATACTCCTAATTTACTATATTTTT
* * *
71168907 CTTAAGAACGTATCGAACCTTTTGACGCGAAGAAAAATGACAGCCAAGCACCCTACCCCAATTAC
1 CTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCACCCCAATTAC
* * *
71168972 TCAGCCCAACGTATTCCTAA
66 TCAACCCAACATACTCCTAA
71168992 AAAAAATTAT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
99 73 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.24
Consensus pattern (99 bp):
CTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCACCCCAATTAC
TCAACCCAACATACTCCTAATTTACTATATTTTT
Found at i:71169003 original size:99 final size:98
Alignment explanation
Indices: 71168799--71169003 Score: 230
Period size: 99 Copynumber: 2.1 Consensus size: 98
71168789 ATCATTATTG
* * * * *
71168799 TTATTATTGCTTAAGAATATATTGAATCTTTTGACGCGAAGAGAGATAACAGCCAAGCACCCCAC
1 TTATT-TTGCTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCAC
* *** *
71168864 CCCGATTACTCAACCCAACATACTCCTAATTTAC
65 CCCAATTACTCAACCCAACATACTCCTAAAAAAA
* * * *
71168898 TATATTTTTCTTAAGAACGTATCGAACCTTTTGACGCGAAGAAAAATGACAGCCAAGCACCCTAC
1 T-TATTTTGCTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCAC
* * *
71168963 CCCAATTACTCAGCCCAACGTATTCCTAAAAAAAA
65 CCCAATTACTCAACCCAACATACTCCT-AAAAAAA
71168998 TTATTT
1 TTATTT
71169004 AATTTCGGTC
Statistics
Matches: 87, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
99 79 0.91
100 8 0.09
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (98 bp):
TTATTTTGCTTAAGAACATATCGAACCTTTTGACGCGAAGAAAAATAACAGCCAAGCACCCCACC
CCAATTACTCAACCCAACATACTCCTAAAAAAA
Found at i:71170215 original size:5 final size:5
Alignment explanation
Indices: 71170196--71170278 Score: 127
Period size: 5 Copynumber: 17.0 Consensus size: 5
71170186 GAAAATAAAG
71170196 TAATA -AATAA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
*
71170246 T-A-A TAATA TAATA TAATA TAATA TAATA AAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA
71170279 AAAATAAAGA
Statistics
Matches: 73, Mismatches: 1, Indels: 8
0.89 0.01 0.10
Matches are distributed among these distances:
3 2 0.03
4 5 0.07
5 63 0.86
6 3 0.04
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
TAATA
Found at i:71173159 original size:9 final size:9
Alignment explanation
Indices: 71173145--71173171 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
71173135 CTATCCCTAT
71173145 AAAATAATA
1 AAAATAATA
71173154 AAAATAATA
1 AAAATAATA
71173163 AAAATAATA
1 AAAATAATA
71173172 GTATAAGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAATAATA
Found at i:71175702 original size:11 final size:11
Alignment explanation
Indices: 71175686--71175719 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
71175676 TGCATCTAAT
*
71175686 TTTGTTCTTGA
1 TTTGTTCTTAA
71175697 TTTGTTCTTAA
1 TTTGTTCTTAA
*
71175708 TTTATTCTTAA
1 TTTGTTCTTAA
71175719 T
1 T
71175720 GATTTAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.09, G:0.09, T:0.65
Consensus pattern (11 bp):
TTTGTTCTTAA
Found at i:71182296 original size:32 final size:32
Alignment explanation
Indices: 71182253--71182316 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
71182243 ACTAGGGTTC
*
71182253 TTTTTACTATATTGGAGACTAGCAGAGAAATT
1 TTTTTACTATATTGGAGACTAGAAGAGAAATT
*
71182285 TTTTTATTATATTGGAGACTAGAAGAGAAATT
1 TTTTTACTATATTGGAGACTAGAAGAGAAATT
71182317 CAAATTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (32 bp):
TTTTTACTATATTGGAGACTAGAAGAGAAATT
Found at i:71183928 original size:13 final size:13
Alignment explanation
Indices: 71183910--71183935 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71183900 TTCTTCTTCC
71183910 TTTTTTATGCTTT
1 TTTTTTATGCTTT
71183923 TTTTTTATGCTTT
1 TTTTTTATGCTTT
71183936 ATTTAAAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (13 bp):
TTTTTTATGCTTT
Found at i:71188464 original size:13 final size:13
Alignment explanation
Indices: 71188446--71188476 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
71188436 CTCCTTCATT
71188446 GCTTTCCCTCTAA
1 GCTTTCCCTCTAA
*
71188459 GCTTTCCCTCTGA
1 GCTTTCCCTCTAA
71188472 GCTTT
1 GCTTT
71188477 TGATTTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.35, G:0.13, T:0.42
Consensus pattern (13 bp):
GCTTTCCCTCTAA
Found at i:71188512 original size:17 final size:17
Alignment explanation
Indices: 71188479--71188517 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
71188469 TGAGCTTTTG
71188479 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
71188496 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
71188513 ATTTT
1 ATTTT
71188518 CCACAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:71189283 original size:15 final size:15
Alignment explanation
Indices: 71189259--71189288 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71189249 TGGAGATCGA
*
71189259 GGAAATGGTCGTGGT
1 GGAAAAGGTCGTGGT
71189274 GGAAAAGGTCGTGGT
1 GGAAAAGGTCGTGGT
71189289 CAAGAAGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (15 bp):
GGAAAAGGTCGTGGT
Found at i:71192668 original size:15 final size:15
Alignment explanation
Indices: 71192648--71192678 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
71192638 GTCATGTAAG
71192648 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
*
71192663 TGAAAGGTCTAGAGT
1 TGAAAGGTCAAGAGT
71192678 T
1 T
71192679 ATATTGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.32, T:0.26
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:71192868 original size:17 final size:17
Alignment explanation
Indices: 71192835--71192873 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
71192825 TAAGCTTTTG
71192835 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
71192852 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
71192869 ATTTT
1 ATTTT
71192874 CCACATGTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Done.