Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 216 of 253
Found at i:71197883 original size:21 final size:23
Alignment explanation
Indices: 71197859--71197909 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 23
71197849 CCTACTATTA
*
71197859 CAAACCCA-ACTAAA-CCTAGCT
1 CAAACCCACACTAAACCCTAGCC
**
71197880 CAAA-TGACACTAAACCCTAGCC
1 CAAACCCACACTAAACCCTAGCC
71197902 CAAACCCA
1 CAAACCCA
71197910 TAACAAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 4
0.71 0.16 0.13
Matches are distributed among these distances:
20 1 0.05
21 10 0.45
22 10 0.45
23 1 0.05
ACGTcount: A:0.43, C:0.39, G:0.06, T:0.12
Consensus pattern (23 bp):
CAAACCCACACTAAACCCTAGCC
Found at i:71198267 original size:25 final size:23
Alignment explanation
Indices: 71198220--71198265 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
71198210 CTGAGGTCTT
*
71198220 TTATATATATATATATATTAAAG
1 TTATATATATATATATATAAAAG
*
71198243 TTATATATTTATATATATCAAAA
1 TTATATATATATATATAT-AAAA
71198266 AGAGGATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTATATATATATATATATAAAAG
Found at i:71199045 original size:3 final size:3
Alignment explanation
Indices: 71199039--71199133 Score: 68
Period size: 3 Copynumber: 31.3 Consensus size: 3
71199029 ATTTTTTTAT
* * ** **
71199039 TTA TTA TTTA TTA TAA AT- TTA TTA TTA TTA TCC TGC TTA TTA TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
71199084 TTA CTA TTA -TA TTTA TTA TTA TTA GTA TCAA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
71199130 TTA T
1 TTA T
71199134 ACTATTAAAC
Statistics
Matches: 72, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
2 3 0.04
3 62 0.86
4 7 0.10
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:71210309 original size:18 final size:20
Alignment explanation
Indices: 71210278--71210343 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
71210268 TAAAATACAA
*
71210278 ATTTTGAAATTTTTATAAAT
1 ATTTTGAAATTTTTAAAAAT
71210298 ATTTT-AAA-TTTTAAAAATT
1 ATTTTGAAATTTTTAAAAA-T
* * * *
71210317 GTTTTGGATTTTTTAAAATT
1 ATTTTGAAATTTTTAAAAAT
71210337 ATTTTGA
1 ATTTTGA
71210344 TTTTTTTTTG
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
18 8 0.22
19 8 0.22
20 12 0.33
21 8 0.22
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
ATTTTGAAATTTTTAAAAAT
Found at i:71210348 original size:19 final size:19
Alignment explanation
Indices: 71210287--71210349 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
71210277 AATTTTGAAA
* *
71210287 TTTTTATAAA-TATTTTAAA
1 TTTTTA-AAATTATTTTGAT
* *
71210306 TTTTAAAAATTGTTTTGGAT
1 TTTTTAAAATTATTTT-GAT
71210326 TTTTTAAAATTATTTTGAT
1 TTTTTAAAATTATTTTGAT
71210345 TTTTT
1 TTTTT
71210350 TTTGTAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 3 0.08
19 18 0.50
20 15 0.42
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (19 bp):
TTTTTAAAATTATTTTGAT
Found at i:71210350 original size:20 final size:20
Alignment explanation
Indices: 71210306--71210349 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
71210296 ATATTTTAAA
* *
71210306 TTTTAAAAATTGTTTTGGAT
1 TTTTTAAAATTATTTTGGAT
71210326 TTTTTAAAATTATTTT-GAT
1 TTTTTAAAATTATTTTGGAT
71210345 TTTTT
1 TTTTT
71210350 TTTGTAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (20 bp):
TTTTTAAAATTATTTTGGAT
Found at i:71210595 original size:156 final size:157
Alignment explanation
Indices: 71210414--71210726 Score: 558
Period size: 156 Copynumber: 2.0 Consensus size: 157
71210404 ATAAAGAGAT
* *
71210414 ATTTACACAAATCTGTTATTTGAATTATTCGAATTGTCAAATTCAACTCGACTCAAACTTAAAAC
1 ATTTACACAAATCTATTATTTGAATTATTCGAATTGTCAAATTCAACTAGACTCAAACTTAAAAC
*
71210479 TTAAATTACTTATTCGAGTTAACTCAAATAACTCGATTCAATTAATTTAAAATTTAAA-TTTT-T
66 CTAAATTACTTATTCGAGTTAACTCAAATAACTCGATTCAATTAATTTAAAATTTAAATTTTTAT
71210542 TTTATTTTTTTCGAATCCACTCTCACCC
131 TTTA-TTTTTTCGAATCCACTCTCACCC
71210570 ATTTACACAAATCTATTATTTGAATTATTCGAATTGTCAAATTCAACTAGACTCAAACTTAAAAC
1 ATTTACACAAATCTATTATTTGAATTATTCGAATTGTCAAATTCAACTAGACTCAAACTTAAAAC
* *
71210635 CTAAATTACTTATTCGAGTTGACTCAAATAGCTCGATTCAATTAATTTAAAATTTAAATTTTTAT
66 CTAAATTACTTATTCGAGTTAACTCAAATAACTCGATTCAATTAATTTAAAATTTAAATTTTTAT
71210700 TTTATTTTTTCGAATCCACTCTCACCC
131 TTTATTTTTTCGAATCCACTCTCACCC
71210727 CTACATTTAT
Statistics
Matches: 150, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
156 118 0.79
157 27 0.18
158 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (157 bp):
ATTTACACAAATCTATTATTTGAATTATTCGAATTGTCAAATTCAACTAGACTCAAACTTAAAAC
CTAAATTACTTATTCGAGTTAACTCAAATAACTCGATTCAATTAATTTAAAATTTAAATTTTTAT
TTTATTTTTTCGAATCCACTCTCACCC
Found at i:71211093 original size:3 final size:3
Alignment explanation
Indices: 71211087--71211112 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
71211077 TTCAAAGAAA
71211087 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
71211113 GATACTTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:71211262 original size:18 final size:19
Alignment explanation
Indices: 71211239--71211275 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
71211229 TTTAAAAAAA
71211239 TATAAA-ATTTGGAATTTT
1 TATAAATATTTGGAATTTT
*
71211257 TATAAATATTTTGAATTTT
1 TATAAATATTTGGAATTTT
71211276 GAAAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
TATAAATATTTGGAATTTT
Found at i:71211288 original size:19 final size:19
Alignment explanation
Indices: 71211244--71211293 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
71211234 AAAAATATAA
*
71211244 AATTTGGAATTTTTATAAAT
1 AATTT-GAATTTTGATAAAT
*
71211264 ATTTTGAATTTTGA-AAATT
1 AATTTGAATTTTGATAAA-T
71211283 AATTTG-ATTTT
1 AATTTGAATTTT
71211294 TTTTGTAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 8 0.31
19 14 0.54
20 4 0.15
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (19 bp):
AATTTGAATTTTGATAAAT
Found at i:71215698 original size:16 final size:16
Alignment explanation
Indices: 71215676--71215744 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
71215666 TTTGGTTCGC
71215676 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
71215692 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
71215708 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
71215725 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
71215741 TGTA
1 TGTA
71215745 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:71215722 original size:33 final size:32
Alignment explanation
Indices: 71215676--71215744 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
71215666 TTTGGTTCGC
71215676 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
71215708 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
71215741 TGTA
1 TGTA
71215745 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:71215809 original size:44 final size:45
Alignment explanation
Indices: 71215725--71215815 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
71215715 GGATTAGAGG
* * *
71215725 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
71215770 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
71215814 TG
1 TG
71215816 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:71216001 original size:18 final size:17
Alignment explanation
Indices: 71215980--71216014 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
71215970 TTATTATTAA
*
71215980 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
71215998 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
71216015 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:71216203 original size:121 final size:120
Alignment explanation
Indices: 71215963--71216346 Score: 716
Period size: 120 Copynumber: 3.2 Consensus size: 120
71215953 ATCATATTTA
71215963 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
71216028 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
* *
71216083 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
71216147 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
71216204 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
71216269 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
71216324 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
71216347 AACTTGAAAA
Statistics
Matches: 256, Mismatches: 5, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
119 1 0.00
120 138 0.54
121 116 0.45
122 1 0.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:71216242 original size:18 final size:17
Alignment explanation
Indices: 71216221--71216255 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
71216211 TTATTATTAA
*
71216221 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
71216239 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
71216256 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:71219408 original size:33 final size:33
Alignment explanation
Indices: 71219369--71219478 Score: 127
Period size: 33 Copynumber: 3.3 Consensus size: 33
71219359 ATTATAAAGC
*
71219369 ATGTATAAATGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
71219402 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
71219435 AATGT-T-ATTGTCCCTAAAA-AACATTGTTGGTGT
1 -ATGTATAATTG-ACCTAAAATTA-ATTGTTGGTGT
71219468 ATGTATAATTG
1 ATGTATAATTG
71219479 TTGGTTTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
32 9 0.14
33 48 0.74
34 8 0.12
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:71219485 original size:51 final size:50
Alignment explanation
Indices: 71219425--71219527 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 50
71219415 CTAAAATTAC
71219425 TTGTTGGTTTAATGTTATTGT-CCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATT-TACCCTAAAAAACATTGTTGGTGTATG-ATAA
71219476 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
71219526 TT
1 TT
71219528 TTTACGTATA
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
50 7 0.14
51 44 0.86
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (50 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
Found at i:71219701 original size:86 final size:86
Alignment explanation
Indices: 71219594--71219774 Score: 355
Period size: 86 Copynumber: 2.1 Consensus size: 86
71219584 TTCTCTCCAC
71219594 ATAA-AATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
71219658 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
71219679 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
1 ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
71219744 TTAATATTAAAGATAAAAATT
66 TTAATATTAAAGATAAAAATT
71219765 ATAATAATTA
1 ATAATAATTA
71219775 CAATTATATT
Statistics
Matches: 95, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 4 0.04
86 91 0.96
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (86 bp):
ATAATAATTATATCAACATTAATACTTAACAAACAGGTTTCATGTTTATTATTAATTTCAAATTA
TTAATATTAAAGATAAAAATT
Found at i:71234637 original size:17 final size:16
Alignment explanation
Indices: 71234593--71234661 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
71234583 TTTGGTTCGC
*
71234593 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
*
71234609 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
71234625 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
71234642 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
71234658 TGTA
1 TGTA
71234662 ATAGCTAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
16 33 0.67
17 16 0.33
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:71234726 original size:44 final size:45
Alignment explanation
Indices: 71234642--71234732 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
71234632 GGATTAGAGG
* * *
71234642 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
71234687 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
71234731 TG
1 TG
71234733 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:71234918 original size:18 final size:17
Alignment explanation
Indices: 71234897--71234931 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
71234887 TTATTATTAA
*
71234897 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
71234915 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
71234932 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:71235038 original size:18 final size:17
Alignment explanation
Indices: 71235017--71235051 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
71235007 TTATTATTAA
*
71235017 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
71235035 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
71235052 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:71235303 original size:120 final size:120
Alignment explanation
Indices: 71234880--71235285 Score: 692
Period size: 120 Copynumber: 3.4 Consensus size: 120
71234870 ATCATATTTA
71234880 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
71234945 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
71235000 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
71235065 TATTCTTATATTAATTTACAGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
71235120 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
71235185 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AAATTT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAAT-ATAAA-TT
* * *
71235240 GAA-ATAATTAATATTAAATATATTTTAATTATAATATATGATTTAA
1 -AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAA
71235286 AATAATTTAA
Statistics
Matches: 274, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
119 7 0.03
120 265 0.97
121 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:71235385 original size:92 final size:91
Alignment explanation
Indices: 71235308--71235516 Score: 217
Period size: 92 Copynumber: 2.3 Consensus size: 91
71235298 TAATTATAAC
* * * *
71235308 TAATAAATTATATTTTATGAATTTGTATAATCTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATCTAAAATAATTAA-TATTAAATATAATTTAATAA
* *
71235372 TTAATATTAAATTTCATAAAATACTTGA
65 TTAATATTAAATTTCAAAAAATAC-TAA
* * * *
71235400 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAAT-AG
1 TAATAAATTATATTATATGAATTTATACAATCTAAAATAATTAATATTAAATATAATTTAATAAT
* * *
71235464 TGATA-TATAATTTCATAAAATTCTCAA
66 TAATATTA-AATTTCAAAAAATACT-AA
* *
71235491 TAATAAATTGTTCTTATATGAATTTA
1 TAATAAATT-ATATTATATGAATTTA
71235517 CTAAAATCAA
Statistics
Matches: 102, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
90 3 0.03
91 29 0.28
92 67 0.66
93 3 0.03
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATCTAAAATAATTAATATTAAATATAATTTAATAAT
TAATATTAAATTTCAAAAAATACTAA
Found at i:71241486 original size:24 final size:24
Alignment explanation
Indices: 71241457--71241520 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
71241447 TTTCTAGAAG
* * *
71241457 ATTTAATATTTATTAGTATAATGT
1 ATTTAACATTTATTAGCATAATAT
71241481 ATTTAACATTTATTAGCATAATAT
1 ATTTAACATTTATTAGCATAATAT
* *
71241505 ATTTGACATTGATTAG
1 ATTTAACATTTATTAG
71241521 AATTAGTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (24 bp):
ATTTAACATTTATTAGCATAATAT
Found at i:71243973 original size:21 final size:21
Alignment explanation
Indices: 71243949--71244019 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
71243939 TGTTTGCTTT
71243949 TTGAAAAAGTCTCTTTATGGC
1 TTGAAAAAGTCTCTTTATGGC
* * * *
71243970 TTGAAACAGTCAC--CAAGG-
1 TTGAAAAAGTCTCTTTATGGC
71243988 TTGAAAAAGTCTCTTTATGGC
1 TTGAAAAAGTCTCTTTATGGC
*
71244009 TTGAAACAGTC
1 TTGAAAAAGTC
71244020 ACCAAGGTAG
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
18 11 0.29
19 3 0.08
20 3 0.08
21 21 0.55
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (21 bp):
TTGAAAAAGTCTCTTTATGGC
Found at i:71243993 original size:18 final size:18
Alignment explanation
Indices: 71243970--71244027 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
71243960 TCTTTATGGC
71243970 TTGAAACAGTCACCAAGG
1 TTGAAACAGTCACCAAGG
* * * *
71243988 TTGAAAAAGTCTCTTTATGG
1 TTGAAACAGTCAC--CAAGG
71244008 CTTGAAACAGTCACCAAGG
1 -TTGAAACAGTCACCAAGG
71244027 T
1 T
71244028 AGTGGTACAA
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
18 12 0.41
19 3 0.10
20 3 0.10
21 11 0.38
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (18 bp):
TTGAAACAGTCACCAAGG
Found at i:71244003 original size:39 final size:39
Alignment explanation
Indices: 71243949--71244027 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
71243939 TGTTTGCTTT
71243949 TTGAAAAAGTCTCTTTATGGCTTGAAACAGTCACCAAGG
1 TTGAAAAAGTCTCTTTATGGCTTGAAACAGTCACCAAGG
71243988 TTGAAAAAGTCTCTTTATGGCTTGAAACAGTCACCAAGG
1 TTGAAAAAGTCTCTTTATGGCTTGAAACAGTCACCAAGG
71244027 T
1 T
71244028 AGTGGTACAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (39 bp):
TTGAAAAAGTCTCTTTATGGCTTGAAACAGTCACCAAGG
Found at i:71245339 original size:24 final size:24
Alignment explanation
Indices: 71245288--71245340 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
71245278 TTTATTATTT
* * *
71245288 ATTAGTATGATATATTTAGCATTT
1 ATTAGCATAATATATTTAGCATTG
71245312 ATTAGCATAATATATTT-GACATTG
1 ATTAGCATAATATATTTAG-CATTG
71245336 ATTAG
1 ATTAG
71245341 AATTAGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.45
Consensus pattern (24 bp):
ATTAGCATAATATATTTAGCATTG
Found at i:71255601 original size:103 final size:102
Alignment explanation
Indices: 71255400--71255612 Score: 243
Period size: 103 Copynumber: 2.1 Consensus size: 102
71255390 ATACAGCCTG
* * * * * *
71255400 GACACACGACCGTGTCCCAGGCTGTGTGAAAATTGGAGCTAAATTTTCAAATATTAAACAAGTCA
1 GACACACGACCGTGTCCAAGGCTATGTGAAAACTGAAGATAAATTTTCAAATATTAAACAAGCCA
*
71255465 GAAAGCTCCACGGGCGAGCCACACGGCCTTGTGTTC-
66 GAAAGCTCCACGGGCGAGCCACACGGCCGTGTGTTCA
* *
71255501 GAACACACGAGCGTGTCCAAGG-TCATGTGAAAACTGAAGATAAAATTTTC-AATTTTAAAACAA
1 G-ACACACGACCGTGTCCAAGGCT-ATGTGAAAACTGAAGAT-AAATTTTCAAATATT-AAACAA
* * * * *
71255564 GCCAGAGAGCTCCACGGGCTAGGCACATGGTCGTGTGTTCA
62 GCCAGAAAGCTCCACGGGCGAGCCACACGGCCGTGTGTTCA
71255605 GACACACG
1 GACACACG
71255613 GGTGTATGGG
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
101 2 0.02
102 36 0.39
103 54 0.58
104 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (102 bp):
GACACACGACCGTGTCCAAGGCTATGTGAAAACTGAAGATAAATTTTCAAATATTAAACAAGCCA
GAAAGCTCCACGGGCGAGCCACACGGCCGTGTGTTCA
Found at i:71257893 original size:6 final size:6
Alignment explanation
Indices: 71257850--71257882 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
71257840 TTCATTTCTC
71257850 TTTATA TTTATA TTTATA TTTATA TTTATA TTT
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTT
71257883 TTTATGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTATA
Found at i:71258521 original size:54 final size:54
Alignment explanation
Indices: 71258439--71258546 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
71258429 CAAGATTGAC
71258439 ATCAAAAGCCATAATTTTTGTGAGATTTTAAGCCTTTAGAGCATACATTTTTTT
1 ATCAAAAGCCATAATTTTTGTGAGATTTTAAGCCTTTAGAGCATACATTTTTTT
71258493 ATCAAAAGCCATAATTTTTGTGAGATTTTAAGCCTTTAGAGCATACATTTTTTT
1 ATCAAAAGCCATAATTTTTGTGAGATTTTAAGCCTTTAGAGCATACATTTTTTT
71258547 CCTACTCACT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (54 bp):
ATCAAAAGCCATAATTTTTGTGAGATTTTAAGCCTTTAGAGCATACATTTTTTT
Found at i:71258941 original size:9 final size:9
Alignment explanation
Indices: 71258927--71258969 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
71258917 AAAGTGAAGT
71258927 GAAAAAAAA
1 GAAAAAAAA
71258936 GAAAAAAAA
1 GAAAAAAAA
71258945 G-AAAAAAA
1 GAAAAAAAA
71258953 G-AAAAAAA
1 GAAAAAAAA
71258961 GAAAAAAAA
1 GAAAAAAAA
71258970 TATTTACATA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 16 0.48
9 17 0.52
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:71258942 original size:8 final size:8
Alignment explanation
Indices: 71258929--71258968 Score: 71
Period size: 8 Copynumber: 4.9 Consensus size: 8
71258919 AGTGAAGTGA
71258929 AAAAAAAG
1 AAAAAAAG
71258937 AAAAAAAAG
1 -AAAAAAAG
71258946 AAAAAAAG
1 AAAAAAAG
71258954 AAAAAAAG
1 AAAAAAAG
71258962 AAAAAAA
1 AAAAAAA
71258969 ATATTTACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 23 0.74
9 8 0.26
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:71261580 original size:25 final size:25
Alignment explanation
Indices: 71261552--71261632 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
71261542 GTCCCTCGTA
71261552 AAGCCTTTGTGGTGATTTATTTGGG
1 AAGCCTTTGTGGTGATTTATTTGGG
* * * *** ***
71261577 AAGCCTCTGTGGCGAGTCCCTTATA
1 AAGCCTTTGTGGTGATTTATTTGGG
71261602 AAGCCTTTGTGGTGATTTATTTGGG
1 AAGCCTTTGTGGTGATTTATTTGGG
71261627 AAGCCT
1 AAGCCT
71261633 CTATGGCGAG
Statistics
Matches: 38, Mismatches: 18, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.19, C:0.16, G:0.28, T:0.37
Consensus pattern (25 bp):
AAGCCTTTGTGGTGATTTATTTGGG
Found at i:71261592 original size:50 final size:49
Alignment explanation
Indices: 71261516--71261663 Score: 224
Period size: 50 Copynumber: 3.0 Consensus size: 49
71261506 CTATGTGGCT
* * *
71261516 ATTTATTTGGGAAGCCTTTGTTGCGAGTCCCTCGTAAAGCCTTTGTGGTG
1 ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCT-ATAAAGCCTTTGTGGTG
71261566 ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCTTATAAAGCCTTTGTGGTG
1 ATTTATTTGGGAAGCCTCTGTGGCGAGTCCC-TATAAAGCCTTTGTGGTG
* *
71261616 ATTTATTTGGGAAGCCTCTATGGCGAGTCACCTATAAATCCTTTGTGG
1 ATTTATTTGGGAAGCCTCTGTGGCGAGTC-CCTATAAAGCCTTTGTGG
71261664 CAAGGTGCAT
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
50 88 0.97
51 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.36
Consensus pattern (49 bp):
ATTTATTTGGGAAGCCTCTGTGGCGAGTCCCTATAAAGCCTTTGTGGTG
Found at i:71264193 original size:3 final size:3
Alignment explanation
Indices: 71264185--71264239 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
71264175 TCAATGGAAC
71264185 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
71264233 ATA ATA A
1 ATA ATA A
71264240 ACGAGATGCT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:71265088 original size:889 final size:876
Alignment explanation
Indices: 71263388--71265494 Score: 2780
Period size: 889 Copynumber: 2.4 Consensus size: 876
71263378 AGTTTTTTGT
* * * * ** *
71263388 GTTACCTAAGAGGTAA-AGAAAAGGAGGAGTGAGCTTATAATAGCCCTAAGGCAAGTCTAATTTT
1 GTTACCTGAGAGGTAAGA-AAAAGGAGGAGTGAGCTTATGACAGCCC-AATGTTAGTTTAATTTT
* * *
71263452 TAAACCATTACATATAATTGTTCAAACGACAAAACATTGAATTTAAAACATCATAGCAAATTAAG
64 TAAACCATTACATATAATTGTTCAAACGATAAAGCATTCAATTTAAAACATCATAGCAAATTAAG
* ** *
71263517 CATAATATAAGAGACATTTATTAAATCAATGCATGTACAAGTTATGCTCATGATGCAATGCAA-T
129 CATACTATAA-AGACATTTCGTAAATCAATGCATGTACAAGTTATGTTCATGATGCAATGCAATT
* * * *
71263581 -T-A---T--ATTCCCACTCATCCATCCTATTCGCCCTCGAGCATTGCTTGACACTCCAAAACAG
193 ATAATTTTAAATTCCCACTCATCCATCCTATTCGCCCTCGAGCATCGCTCGACACTTCAAAACAC
* * ** *
71263639 ATTTCAGTAATTGGCCATCCCAAATTTCTCGATTACGA-TGTTCGTTCACTTGTCATCCGTGATG
258 ATTTCAGTAACTGACCATCCCGGATTTCCCGATTACGATTGTT-GTTCACTTGTCATCCGTGATG
* * * * * *
71263703 ATGACTTTTACTATAATAACTTACCAAATATAACACCCCCGACCAGGATTAGGAGTTTGGACAAA
322 ATGACTTTTACTACAATAACTTACCAAATATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAA
* *
71263768 GTCAAAGGTGCTACATTGATCACCGAAGTGATCCAGTAAAGCTATTCTTTTGCTTGAGTTGAAAT
387 GTCAAAGGCGCTACATTGATCACCGAAGTGATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAAT
*
71263833 GTATGAAAATCACTCTTTTGTTTTTAAGAAAGACATTCATTAATTAATCCAGCTTTACTTAGTAA
452 GTATGAAAATCACTCTTTTGTTTTTAAGAAAGACATTCATTAATTAATCCAGCTTTACTCAGTAA
71263898 TCTATCTACAATATTATTAACGTGAAGTGTTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTT
517 TCTATCTACAATATTATTAACGTGAAGTGTTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTT
* *
71263963 ATCAAAACTTTAAGTATTTTGCAAAGTAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACC
582 ATCAAAACTTTAAGAATTTTGCAAAGCAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACC
* * *
71264028 AATTAGCATGCAATAATTATAGTAATAACTAAATGCCATGCTTAAAAATTTATAAGCTAAATAGT
647 AATTAGCATGCAATAATTAAAGTAATAACTAAAAGCCATGCTTAAAAATTTATAAGCTAAATAAT
* *
71264093 CCAAAACCACAATTATGAAAGCAATAAATAATTAATAGCTTACGACCCAATTAACAAACCAAAAA
712 CCAAAACCACAATTATCAAAGCAATAAATAATTAAAAGCTTACGACCCAATTAACAAACCAAAAA
*
71264158 AATGATTAAGGAAAACTTCAATGGAACATAATAATAATAATAATAATAATAATAATAATAATAAT
777 AATGATTAAGGAAAACTTCAATGGAACATAATAATAATAATAA-AA-AATAA-AATAATAATAAG
* * * *
71264223 A-ATAATAATAAT-AATAAACGAGATGCTAGTCCGAGGTTCT-TTC
839 AGAT--TAAT--TCAAT--ACCA-ATCCGAGTCCGA-GTTCTCTAC
*
71264266 GATGCTAACCTGAGAGGTAAGAAAAAGGCGGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATT
1 G-T--T-ACCTGAGAGGTAAGAAAAAGGAGGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATT
*
71264331 TTTAAACCATTACATATAATTGTTCAAACGATAAAGCATTCAGTTTAAAACATCATAGCAAATTA
62 TTTAAACCATTACATATAATTGTTCAAACGATAAAGCATTCAATTTAAAACATCATAGCAAATTA
* *
71264396 AGCATACTATAAATGACATTTCGTAAATCAATGCATGTACAAGTTATGTTCATGATGTAATACAA
127 AGCATACTATAAA-GACATTTCGTAAATCAATGCATGTACAAGTTATGTTCATGATGCAATGCAA
* * * *
71264461 TTATAATTTTAAATTCCCACTCATCCATCCTATTCACCCTCAAACATCGCTCGATACTTCAAAAC
191 TTATAATTTTAAATTCCCACTCATCCATCCTATTCGCCCTCGAGCATCGCTCGACACTTCAAAAC
* *
71264526 ACATTTCAGTAACTGACCATCTCGGATTTCCCGATTACGATTGTTGTTCACTTGTTATCCGTGAT
256 ACATTTCAGTAACTGACCATCCCGGATTTCCCGATTACGATTGTTGTTCACTTGTCATCCGTGAT
* * * *
71264591 GATGACTTTTACTACAATAACTTACCAAATGTAAAACCCCCAACCAAGCTTAAGAGTTTTAACTA
321 GATGACTTTTACTACAATAACTTACCAAATATAAAACCCCCAACCAAGATTAAGAGTTTGAACAA
* * * *
71264656 AGTCAAAGGCGTTACATTGATCACTGAAGTGATCTAGTAAAGCCATTCTTTTGCTTGAGTTGAAT
386 AGTCAAAGGCGCTACATTGATCACCGAAGTGATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAA
* *
71264721 TGTATGAAAATCACTTTTTTGTTTTTAAGAAAGACATTCATTAATTAAT-CTGACTTTACTCAGT
451 TGTATGAAAATCACTCTTTTGTTTTTAAGAAAGACATTCATTAATTAATCCAG-CTTTACTCAGT
* * * * **
71264785 AATCTATTTACAATATTATTAATGTGAAGT-TTTTTTTATAAAGCTG-TTTATGGTTTTAAAAGA
515 AATCTATCTACAATATTATTAACGTGAAGTGTTTTTTGAGAAA-AAGATTTATGGTTTTAAAAGA
* * * *
71264848 CTTATCAAAACTTTAAGAATTTTGCAAAGCAGTGGAAATCAATAATAAGATTAATGGTTTTCTAA
579 CTTATCAAAACTTTAAGAATTTTGCAAAGCAATGGAAACCAATAATAAGAATAATAGTTTTCTAA
* * *
71264913 ACCAATTAGCATGCAATAATTAAAGTAATAAGTAAAAGTCATGCTTAAAATTTTATAAGCTAAAT
644 ACCAATTAGCATGCAATAATTAAAGTAATAACTAAAAGCCATGCTTAAAAATTTATAAGCTAAAT
* * * *
71264978 AATCCCAAACCATAGTTATCAAAGCAATAAATAATTAAAAGCTTACGACCCCATTAACAAACCAA
709 AATCCAAAACCACAATTATCAAAGCAATAAATAATTAAAAGCTTACGACCCAATTAACAAACCAA
* * * * ** * **
71265043 TAAAATGATTAATGAAAACTTCAATGGAACATAATAATAAATAATAAAAAATGAGATGCTAGTCC
774 AAAAATGATTAAGGAAAACTTCAATGGAACATAATAAT-AATAATAAAAAATAAAATAATAATAA
* ** * * *
71265108 GAGGTTCCTTCGATGCCAATCCGAGTCCTAGTTCTCTAC
838 GAGATTAATTCAATACCAATCCGAGTCCGAGTTCTCTAC
* * * * *
71265147 GTTACCTGAGAGGTAAGATAAAGGGGGAGTAAGCTTATGTCAGTCCAATGTTAGTTTAATTTTTA
1 GTTACCTGAGAGGTAAGAAAAAGGAGGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTA
*
71265212 AACCATTACATATAATTGTTCAAATGATAAAGCATTCAATTTAAAACA-CTATAGCAAATTAAGC
66 AACCATTACATATAATTGTTCAAACGATAAAGCATTCAATTTAAAACATC-ATAGCAAATTAAGC
* *
71265276 ACACTATAAGGGACA-TTCAGTAAATCAATGCATGTACAAGTTATGTTCATGATGCAATGCAATT
130 ATACTATAA-AGACATTTC-GTAAATCAATGCATGTACAAGTTATGTTCATGATGCAATGCAATT
* *
71265340 ATAATTTTAAATTCCCCAC-CACCCATCCTATTCGCCCTCGAGCATCACTCGACA-TTCAAAAAC
193 ATAATTTTAAATT-CCCACTCATCCATCCTATTCGCCCTCGAGCATCGCTCGACACTTC-AAAAC
* * * * ** *
71265403 ACATTTTAGTAACTGACCATCCCGGATTTCCC-AGTGACAATAGTCATTCACTTGTCATCTGTGA
256 ACATTTCAGTAACTGACCATCCCGGATTTCCCGA-TTACGATTGTTGTTCACTTGTCATCCGTGA
*
71265467 CGATGACTTTTACTACAATAACTTACCA
320 TGATGACTTTTACTACAATAACTTACCA
71265495 TCCTAGTTTG
Statistics
Matches: 1079, Mismatches: 123, Indels: 55
0.86 0.10 0.04
Matches are distributed among these distances:
876 8 0.01
877 299 0.28
878 7 0.01
879 1 0.00
880 7 0.01
881 142 0.13
882 40 0.04
883 3 0.00
884 3 0.00
885 2 0.00
886 6 0.01
887 6 0.01
888 244 0.23
889 307 0.28
890 4 0.00
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.31
Consensus pattern (876 bp):
GTTACCTGAGAGGTAAGAAAAAGGAGGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTA
AACCATTACATATAATTGTTCAAACGATAAAGCATTCAATTTAAAACATCATAGCAAATTAAGCA
TACTATAAAGACATTTCGTAAATCAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATA
ATTTTAAATTCCCACTCATCCATCCTATTCGCCCTCGAGCATCGCTCGACACTTCAAAACACATT
TCAGTAACTGACCATCCCGGATTTCCCGATTACGATTGTTGTTCACTTGTCATCCGTGATGATGA
CTTTTACTACAATAACTTACCAAATATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAAGTCA
AAGGCGCTACATTGATCACCGAAGTGATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAATGTAT
GAAAATCACTCTTTTGTTTTTAAGAAAGACATTCATTAATTAATCCAGCTTTACTCAGTAATCTA
TCTACAATATTATTAACGTGAAGTGTTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTTATCA
AAACTTTAAGAATTTTGCAAAGCAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATT
AGCATGCAATAATTAAAGTAATAACTAAAAGCCATGCTTAAAAATTTATAAGCTAAATAATCCAA
AACCACAATTATCAAAGCAATAAATAATTAAAAGCTTACGACCCAATTAACAAACCAAAAAAATG
ATTAAGGAAAACTTCAATGGAACATAATAATAATAATAAAAAATAAAATAATAATAAGAGATTAA
TTCAATACCAATCCGAGTCCGAGTTCTCTAC
Found at i:71265431 original size:877 final size:875
Alignment explanation
Indices: 71263282--71265494 Score: 2877
Period size: 877 Copynumber: 2.5 Consensus size: 875
71263272 GCGACACATC
* *
71263282 ACCAATAAAATGATTAAGGAAAACTTCAAT-GAA-AT-ATAATAAATAATAATAAACGAGATGCT
1 ACCAATAAAATGATTAAGGAAAACTTCAATGGAACATAATAATAAATAATAAAAAATGAGATGCT
* * * * * ** *
71263344 AGTCCGAGGTTCCTCCGATGGCAATCTGTGTCCTAGTTTTTTGTGTTACCTAAGAGGTAAAGAAA
66 AGTCCGAGGTTCCTACGATGCCAATCCGAGTCCTAG-TTCTTACGTTACCTGAGAGGT-AAGAAA
* * ** *
71263409 AGGAGGAGTGAGCTTATAAT-AGCCCTAAGGCAAGTCTAATTTTTAAACCATTACATATAATTGT
129 AGGAGGAGTGAGCTTAT-GTCAGCCC-AATGTTAGTTTAATTTTTAAACCATTACATATAATTGT
* * * * * *
71263473 TCAAACGACAAAACATTGAATTTAAAACATCATAGCAAATTAAGCATAATATAAGAGACATTTAT
192 TCAAACGATAAAGCATTCAATTTAAAACATCATAGCAAATTAAGCATACTATAAGAGACATTCAG
*
71263538 TAAATCAATGCATGTACAAGTTATGCTCATGATGCAATGCAA-T-T-A---T--ATTCCCACTCA
257 TAAATCAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCACTCA
* * * * * *
71263595 TCCATCCTATTCGCCCTCGAGCATTGCTTGACACTCCAAAACAGATTTCAGTAATTGGCCATCCC
322 TCCATCCTATTCGCCCTCGAGCATCGCTCGACA-TTCAAAACACATTTCAGTAACTGACCATCCC
** * *
71263660 AAATTTCTCGATTACGA-TGTTCGTTCACTTGTCATCCGTGATGATGACTTTTACTATAATAACT
386 GGATTTCCCGATTACGATTGTT-GTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACT
* * * * * *
71263724 TACCAAATATAACACCCCCGACCAGGATTAGGAGTTTGGACAAAGTCAAAGGTGCTACATTGATC
450 TACCAAATATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAAGTCAAAGGCGCTACATTGATC
*
71263789 ACCGAAGTGATCCAGTAAAGCTATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGT
515 ACCGAAGTGATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGT
*
71263854 TTTTAAGAAAGACATTCATTAATTAATCCAGCTTTACTTAGTAATCTATCTACAATATTATTAAC
580 TTTTAAGAAAGACATTCATTAATTAATCCAGCTTTACTCAGTAATCTATCTACAATATTATTAAC
*
71263919 GTGAAGTGTTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGTATTTTG
645 GTGAAGTGTTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGAATTTTG
* *
71263984 CAAAGTAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTATA
710 CAAAGCAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTAAA
* * *
71264049 GTAATAACTAAATGCCATGCTTAAAAATTTATAAGCTAAATAGTCCAAAACCACAATTATGAAAG
775 GTAATAACTAAAAGCCATGCTTAAAAATTTATAAGCTAAATAATCCAAAACCACAATTATCAAAG
*
71264114 CAATAAATAATTAATAGCTTACGACCCAATTAACAA
840 CAATAAATAATTAAAAGCTTACGACCCAATTAACAA
* * *
71264150 ACCAAAAAAATGATTAAGGAAAACTTCAATGGAACATAATAATAATAATAATAATAATAATAATA
1 ACCAATAAAATGATTAAGGAAAACTTCAATGGAACATAATAAT-A-AATAATAA-AA-AATGA-G
** * *** * ** ** ** * * * * *
71264215 ATAATAATAATA-ATAATAATAATAAACGAGATGCTAGTCCGAGGTTCTTTCGATGCTAACCTGA
61 ATGCTAGTCCGAGGT--TCCTACGATGCCA-ATCCGAGTCCTA-GTTCTTACG-T--T-ACCTGA
* *
71264279 GAGGTAAGAAAAAGGCGGAGTGAGCTTATGACAGCCCAATGTTAGTTTAATTTTTAAACCATTAC
118 GAGGTAAG-AAAAGGAGGAGTGAGCTTATGTCAGCCCAATGTTAGTTTAATTTTTAAACCATTAC
*
71264344 ATATAATTGTTCAAACGATAAAGCATTCAGTTTAAAACATCATAGCAAATTAAGCATACTATAA-
182 ATATAATTGTTCAAACGATAAAGCATTCAATTTAAAACATCATAGCAAATTAAGCATACTATAAG
* *
71264408 ATGACATTTC-GTAAATCAATGCATGTACAAGTTATGTTCATGATGTAATACAATTATAATTTTA
247 A-GACA-TTCAGTAAATCAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTA
* * * *
71264472 AATTCCCACTCATCCATCCTATTCACCCTCAAACATCGCTCGATACTTCAAAACACATTTCAGTA
310 AATTCCCACTCATCCATCCTATTCGCCCTCGAGCATCGCTCGACA-TTCAAAACACATTTCAGTA
* *
71264537 ACTGACCATCTCGGATTTCCCGATTACGATTGTTGTTCACTTGTTATCCGTGATGATGACTTTTA
374 ACTGACCATCCCGGATTTCCCGATTACGATTGTTGTTCACTTGTCATCCGTGATGATGACTTTTA
* * * *
71264602 CTACAATAACTTACCAAATGTAAAACCCCCAACCAAGCTTAAGAGTTTTAACTAAGTCAAAGGCG
439 CTACAATAACTTACCAAATATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAAGTCAAAGGCG
* * * *
71264667 TTACATTGATCACTGAAGTGATCTAGTAAAGCCATTCTTTTGCTTGAGTTGAATTGTATGAAAAT
504 CTACATTGATCACCGAAGTGATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAATGTATGAAAAT
* * *
71264732 CACTTTTTTGTTTTTAAGAAAGACATTCATTAATTAAT-CTGACTTTACTCAGTAATCTATTTAC
569 CACTCTTTTGTTTTTAAGAAAGACATTCATTAATTAATCCAG-CTTTACTCAGTAATCTATCTAC
* * * **
71264796 AATATTATTAATGTGAAGT-TTTTTTTATAAAGCTG-TTTATGGTTTTAAAAGACTTATCAAAAC
633 AATATTATTAACGTGAAGTGTTTTTTGAGAAA-AAGATTTATGGTTTTAAAAGACTTATCAAAAC
* * * *
71264859 TTTAAGAATTTTGCAAAGCAGTGGAAATCAATAATAAGATTAATGGTTTTCTAAACCAATTAGCA
697 TTTAAGAATTTTGCAAAGCAATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCA
* * * *
71264924 TGCAATAATTAAAGTAATAAGTAAAAGTCATGCTTAAAATTTTATAAGCTAAATAATCCCAAACC
762 TGCAATAATTAAAGTAATAACTAAAAGCCATGCTTAAAAATTTATAAGCTAAATAATCCAAAACC
* * *
71264989 ATAGTTATCAAAGCAATAAATAATTAAAAGCTTACGACCCCATTAACAA
827 ACAATTATCAAAGCAATAAATAATTAAAAGCTTACGACCCAATTAACAA
*
71265038 ACCAATAAAATGATTAATGAAAACTTCAATGGAACATAATAATAAATAATAAAAAATGAGATGCT
1 ACCAATAAAATGATTAAGGAAAACTTCAATGGAACATAATAATAAATAATAAAAAATGAGATGCT
*
71265103 AGTCCGAGGTTCCTTCGATGCCAATCCGAGTCCTAGTTCTCTACGTTACCTGAGAGGTAAGATAA
66 AGTCCGAGGTTCCTACGATGCCAATCCGAGTCCTAGTTCT-TACGTTACCTGAGAGGTAAGA-AA
* * *
71265168 AGGGGGAGTAAGCTTATGTCAGTCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTC
129 AGGAGGAGTGAGCTTATGTCAGCCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTC
* * *
71265233 AAATGATAAAGCATTCAATTTAAAACA-CTATAGCAAATTAAGCACACTATAAGGGACATTCAGT
194 AAACGATAAAGCATTCAATTTAAAACATC-ATAGCAAATTAAGCATACTATAAGAGACATTCAGT
71265297 AAATCAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCCAC-CA
258 AAATCAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATT-CCCACTCA
* * *
71265361 CCCATCCTATTCGCCCTCGAGCATCACTCGACATTCAAAAACACATTTTAGTAACTGACCATCCC
322 TCCATCCTATTCGCCCTCGAGCATCGCTCGACATTC-AAAACACATTTCAGTAACTGACCATCCC
* * * ** * *
71265426 GGATTTCCC-AGTGACAATAGTCATTCACTTGTCATCTGTGACGATGACTTTTACTACAATAACT
386 GGATTTCCCGA-TTACGATTGTTGTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACT
71265490 TACCA
450 TACCA
71265495 TCCTAGTTTG
Statistics
Matches: 1151, Mismatches: 154, Indels: 71
0.84 0.11 0.05
Matches are distributed among these distances:
868 29 0.03
869 3 0.00
870 2 0.00
871 5 0.00
872 1 0.00
873 8 0.01
874 1 0.00
875 4 0.00
876 15 0.01
877 302 0.26
878 18 0.02
879 2 0.00
880 7 0.01
881 142 0.12
882 42 0.04
883 7 0.01
884 6 0.01
885 2 0.00
886 8 0.01
887 2 0.00
888 242 0.21
889 299 0.26
890 4 0.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (875 bp):
ACCAATAAAATGATTAAGGAAAACTTCAATGGAACATAATAATAAATAATAAAAAATGAGATGCT
AGTCCGAGGTTCCTACGATGCCAATCCGAGTCCTAGTTCTTACGTTACCTGAGAGGTAAGAAAAG
GAGGAGTGAGCTTATGTCAGCCCAATGTTAGTTTAATTTTTAAACCATTACATATAATTGTTCAA
ACGATAAAGCATTCAATTTAAAACATCATAGCAAATTAAGCATACTATAAGAGACATTCAGTAAA
TCAATGCATGTACAAGTTATGTTCATGATGCAATGCAATTATAATTTTAAATTCCCACTCATCCA
TCCTATTCGCCCTCGAGCATCGCTCGACATTCAAAACACATTTCAGTAACTGACCATCCCGGATT
TCCCGATTACGATTGTTGTTCACTTGTCATCCGTGATGATGACTTTTACTACAATAACTTACCAA
ATATAAAACCCCCAACCAAGATTAAGAGTTTGAACAAAGTCAAAGGCGCTACATTGATCACCGAA
GTGATCCAGTAAAGCCATTCTTTTGCTTGAGTTGAAATGTATGAAAATCACTCTTTTGTTTTTAA
GAAAGACATTCATTAATTAATCCAGCTTTACTCAGTAATCTATCTACAATATTATTAACGTGAAG
TGTTTTTTGAGAAAAAGATTTATGGTTTTAAAAGACTTATCAAAACTTTAAGAATTTTGCAAAGC
AATGGAAACCAATAATAAGAATAATAGTTTTCTAAACCAATTAGCATGCAATAATTAAAGTAATA
ACTAAAAGCCATGCTTAAAAATTTATAAGCTAAATAATCCAAAACCACAATTATCAAAGCAATAA
ATAATTAAAAGCTTACGACCCAATTAACAA
Found at i:71265928 original size:15 final size:13
Alignment explanation
Indices: 71265889--71265931 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
71265879 TTCGCATTTA
71265889 AGGTTTGCACATAC
1 AGGTTT-CACATAC
*
71265903 AGGTTTCACATAT
1 AGGTTTCACATAC
71265916 AGAGTTCTCACATAC
1 AG-GTT-TCACATAC
71265931 A
1 A
71265932 AAGTTTGCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.32
14 9 0.36
15 8 0.32
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (13 bp):
AGGTTTCACATAC
Found at i:71265952 original size:13 final size:13
Alignment explanation
Indices: 71265934--71266003 Score: 50
Period size: 13 Copynumber: 5.2 Consensus size: 13
71265924 CACATACAAA
*
71265934 GTTTGCATGTAGG
1 GTTTGCATATAGG
*
71265947 GTTTGCATATAAG
1 GTTTGCATATAGG
** * *
71265960 GTTCACACATACAGA
1 GTT--TGCATATAGG
*
71265975 GTTTGCATGTAGG
1 GTTTGCATATAGG
*
71265988 GTTTGCATATAAG
1 GTTTGCATATAGG
71266001 GTT
1 GTT
71266004 CACACATACA
Statistics
Matches: 41, Mismatches: 14, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
13 33 0.80
15 8 0.20
ACGTcount: A:0.26, C:0.11, G:0.27, T:0.36
Consensus pattern (13 bp):
GTTTGCATATAGG
Found at i:71265969 original size:41 final size:41
Alignment explanation
Indices: 71265911--71266050 Score: 210
Period size: 41 Copynumber: 3.4 Consensus size: 41
71265901 ACAGGTTTCA
*
71265911 CATAT-AGAGTTCTCACATACAAAGTTTGCATGTAGGGTTTG
1 CATATAAG-GTTCACACATACAAAGTTTGCATGTAGGGTTTG
*
71265952 CATATAAGGTTCACACATACAGAGTTTGCATGTAGGGTTTG
1 CATATAAGGTTCACACATACAAAGTTTGCATGTAGGGTTTG
*
71265993 CATATAAGGTTCACACATACAAAGTTTGCATGTAGTGTTTG
1 CATATAAGGTTCACACATACAAAGTTTGCATGTAGGGTTTG
*
71266034 CACATATAGGGTTCACA
1 --CATATAAGGTTCACA
71266051 TATAAGGTTC
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
41 75 0.82
42 2 0.02
43 14 0.15
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (41 bp):
CATATAAGGTTCACACATACAAAGTTTGCATGTAGGGTTTG
Found at i:71266083 original size:24 final size:24
Alignment explanation
Indices: 71266046--71266223 Score: 96
Period size: 24 Copynumber: 7.5 Consensus size: 24
71266036 CATATAGGGT
*
71266046 TCACATATAAGGTTCGCATACTAAA
1 TCACATA-AGGGTTCGCATACTAAA
* * * *
71266071 TCACTTGAGGGTTAGCATAATAAA
1 TCACATAAGGGTTCGCATACTAAA
* * *
71266095 TTACATAAAGGTTCACATA-TATAA
1 TCACATAAGGGTTCGCATACTA-AA
** ** * *
71266119 TCGTATGGGGGTTCGTATATTAAA
1 TCACATAAGGGTTCGCATACTAAA
71266143 TC-CATAAGGGTTCGCATACTAAA
1 TCACATAAGGGTTCGCATACTAAA
* * * *
71266166 TCATATTAGGGTTTGCATATTAAA
1 TCACATAAGGGTTCGCATACTAAA
**
71266190 --ACATATAGGGTTTTTCATACTAAA
1 TCACATA-AGGG-TTCGCATACTAAA
*
71266214 TC-TATAAGGG
1 TCACATAAGGG
71266224 CTTGATTATA
Statistics
Matches: 113, Mismatches: 33, Indels: 15
0.70 0.20 0.09
Matches are distributed among these distances:
22 3 0.03
23 24 0.21
24 76 0.67
25 10 0.09
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.33
Consensus pattern (24 bp):
TCACATAAGGGTTCGCATACTAAA
Found at i:71266178 original size:47 final size:47
Alignment explanation
Indices: 71266052--71266223 Score: 147
Period size: 47 Copynumber: 3.7 Consensus size: 47
71266042 GGGTTCACAT
*
71266052 ATAA-GGTTCGCATACTAAATCACT-TGAGGGTTAGCATAATAAATTAC
1 ATAAGGGTTCGCATACTAAATCA-TATGAGGGTTAGCATATTAAA-TAC
* * * * * * *
71266099 ATAAAGGTTCACATA-TATAATCGTATGGGGGTTCGTATATTAAATCC
1 ATAAGGGTTCGCATACTA-AATCATATGAGGGTTAGCATATTAAATAC
* *
71266146 ATAAGGGTTCGCATACTAAATCATATTAGGGTTTGCATATTAAA-AC
1 ATAAGGGTTCGCATACTAAATCATATGAGGGTTAGCATATTAAATAC
** *
71266192 ATATAGGGTTTTTCATACTAAATC-TATAAGGG
1 ATA-AGGG-TTCGCATACTAAATCATATGAGGG
71266224 CTTGATTATA
Statistics
Matches: 101, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
46 4 0.04
47 54 0.53
48 43 0.43
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (47 bp):
ATAAGGGTTCGCATACTAAATCATATGAGGGTTAGCATATTAAATAC
Found at i:71266269 original size:58 final size:58
Alignment explanation
Indices: 71266205--71266426 Score: 220
Period size: 58 Copynumber: 3.8 Consensus size: 58
71266195 TAGGGTTTTT
* * *
71266205 CATACTAAATC-TATAAGGGCTTGATTATA-GGGTTCACATAATATATAATAAGAGATCA
1 CATACTAAATCATATAAAGG-TT-ATTATATGGGTTCACATAATATATAGTAAGAGATCG
* * * * * *
71266263 CATACTAAGTCATATAAGGGTT-TGCATATGAGTTCGA-ATAATATATGGTAAAAGATCG
1 CATACTAAATCATATAAAGGTTAT-TATATGGGTTC-ACATAATATATAGTAAGAGATCG
* * ** * *
71266321 CATACTAAATCATATAAAGGTTTTTGTATGGGTTTGCATAATATATGGTATGAGATCG
1 CATACTAAATCATATAAAGGTTATTATATGGGTTCACATAATATATAGTAAGAGATCG
*
71266379 CATACTAAATCATATAAAGGTT-TTCATATGGGTTCGCATAATATATAG
1 CATACTAAATCATATAAAGGTTATT-ATATGGGTTCACATAATATATAG
71266427 GGTTCACATA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
56 1 0.01
57 5 0.04
58 122 0.88
59 10 0.07
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (58 bp):
CATACTAAATCATATAAAGGTTATTATATGGGTTCACATAATATATAGTAAGAGATCG
Found at i:71266431 original size:18 final size:18
Alignment explanation
Indices: 71266404--71266462 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
71266394 AAAGGTTTTC
71266404 ATAT-GGGTTCGCATAAT
1 ATATAGGGTTCGCATAAT
* *
71266421 ATATAGGGTTCACATAAG
1 ATATAGGGTTCGCATAAT
* *
71266439 ATATAGGGTTCGTATTAT
1 ATATAGGGTTCGCATAAT
71266457 ATATAG
1 ATATAG
71266463 TAAGAGGTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
17 4 0.11
18 31 0.89
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (18 bp):
ATATAGGGTTCGCATAAT
Found at i:71268986 original size:20 final size:21
Alignment explanation
Indices: 71268961--71269000 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
71268951 TGTGATAAAT
71268961 ATTATAAA-TAATAAAAAACC
1 ATTATAAATTAATAAAAAACC
71268981 ATTATAAATTTAATAAAAAA
1 ATTATAAA-TTAATAAAAAA
71269001 AGTATTATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (21 bp):
ATTATAAATTAATAAAAAACC
Found at i:71269645 original size:17 final size:19
Alignment explanation
Indices: 71269609--71269646 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
71269599 AATTAAAAAG
*
71269609 TTTAATATATATATAGTTT
1 TTTAAAATATATATAGTTT
71269628 TTTAAAATAT-TATA-TTT
1 TTTAAAATATATATAGTTT
71269645 TT
1 TT
71269647 ATCATTTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
19 9 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (19 bp):
TTTAAAATATATATAGTTT
Found at i:71269890 original size:22 final size:22
Alignment explanation
Indices: 71269849--71269890 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
71269839 GTAACGGATC
*
71269849 GATTTTTAATACTTTTTTTATA
1 GATTTTTAATACTTTATTTATA
**
71269871 GATTTTTAATGGTTTATTTA
1 GATTTTTAATACTTTATTTA
71269891 ATTGAGTTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.62
Consensus pattern (22 bp):
GATTTTTAATACTTTATTTATA
Found at i:71270626 original size:53 final size:53
Alignment explanation
Indices: 71270569--71270685 Score: 218
Period size: 53 Copynumber: 2.2 Consensus size: 53
71270559 CCGAATTAAC
71270569 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
1 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
71270622 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
1 AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
*
71270675 -ATGAACATTAA
1 AATGAAAATTAA
71270686 TGGCTATAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 10 0.16
53 53 0.84
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (53 bp):
AATGAAAATTAAAATTATGCACACAGAATATATATTTATACACAATCTAATAT
Found at i:71279796 original size:25 final size:27
Alignment explanation
Indices: 71279759--71279811 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
71279749 TCAAACATGC
71279759 ATTTAGGTCAATTTAACT-CTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
* *
71279785 ATTTCGGT-AATTTATCTACTAGGGGT
1 ATTTAGGTCAATTTAACTACTAGGGGT
71279811 A
1 A
71279812 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTACTAGGGGT
Found at i:71281337 original size:26 final size:26
Alignment explanation
Indices: 71281301--71281408 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
71281291 TGAAATTCTC
71281301 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71281327 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
71281353 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71281379 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71281405 ATCA
1 ATCA
71281409 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:71288428 original size:26 final size:26
Alignment explanation
Indices: 71288398--71288479 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
71288388 TGAAATTCCC
71288398 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
71288424 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
71288450 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71288476 ATCA
1 ATCA
71288480 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:71296349 original size:19 final size:20
Alignment explanation
Indices: 71296322--71296361 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
71296312 GTAAATACAC
* *
71296322 ATATGTTTATAAT-TGATCA
1 ATATATTTAAAATATGATCA
71296341 ATATATTTAAAATATGATCA
1 ATATATTTAAAATATGATCA
71296361 A
1 A
71296362 CATCAAATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.42
Consensus pattern (20 bp):
ATATATTTAAAATATGATCA
Found at i:71298353 original size:24 final size:24
Alignment explanation
Indices: 71298326--71298373 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
71298316 TAATATTTTC
*
71298326 GGATACATAGATAAAAAAGTTCAT
1 GGATACATAGATAAAAAAATTCAT
71298350 GGATACATAGATAAAAAAATTCAT
1 GGATACATAGATAAAAAAATTCAT
71298374 AAAATATAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.08, G:0.15, T:0.25
Consensus pattern (24 bp):
GGATACATAGATAAAAAAATTCAT
Found at i:71299003 original size:44 final size:44
Alignment explanation
Indices: 71298953--71299040 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
71298943 TGAGGTTTTA
71298953 TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
1 TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
*
71298997 TATGTCAAAGGCACTGACAATATTATTGCTAATTATCTTAGCAG
1 TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
71299041 ACCTTATGGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (44 bp):
TATGTCAAAGGCACTGACAATATTATTCCTAATTATCTTAGCAG
Found at i:71299130 original size:21 final size:21
Alignment explanation
Indices: 71299104--71299145 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
71299094 TGTTAATAAA
71299104 AGACCGAGCAAAGAGAACACC
1 AGACCGAGCAAAGAGAACACC
71299125 AGACCGAGCAAAGAGAACACC
1 AGACCGAGCAAAGAGAACACC
71299146 TTCAAATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.29, G:0.24, T:0.00
Consensus pattern (21 bp):
AGACCGAGCAAAGAGAACACC
Found at i:71308411 original size:45 final size:44
Alignment explanation
Indices: 71308338--71308447 Score: 105
Period size: 45 Copynumber: 2.5 Consensus size: 44
71308328 CATGGTGTCT
* * * *
71308338 TTCAACCGTGGTCTTACTCAT-TTATATCAAGACATCATAGCATC
1 TTCAACCATGGTTTTACTCATCCT-TATCAAGACACCATAGCATC
* * * ***
71308382 TTTCAGCTATGGTTTTACTCATCCTTATCATGGTGCCATAGCATC
1 -TTCAACCATGGTTTTACTCATCCTTATCAAGACACCATAGCATC
71308427 TTCAACCATGGTTTTACTCAT
1 TTCAACCATGGTTTTACTCAT
71308448 TTTTAGGCAT
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
44 19 0.37
45 32 0.62
46 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.38
Consensus pattern (44 bp):
TTCAACCATGGTTTTACTCATCCTTATCAAGACACCATAGCATC
Found at i:71310109 original size:42 final size:42
Alignment explanation
Indices: 71310039--71310119 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
71310029 TTATCCCAGA
* * *
71310039 AAAAAAGAATTTAAAAAGTGGATAAGATAATCTTGGGTTGTTG
1 AAAAAAGAATTTAAAAAG-AGAGAAGATAAACTTGGGTTGTTG
71310082 AAAAAAGAATTTACAAAA-AGAGAAGATAAACTTGGGTT
1 AAAAAAGAATTTA-AAAAGAGAGAAGATAAACTTGGGTT
71310120 TTTGGATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 17 0.50
43 13 0.38
44 4 0.12
ACGTcount: A:0.49, C:0.04, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAAAAGAATTTAAAAAGAGAGAAGATAAACTTGGGTTGTTG
Found at i:71313429 original size:36 final size:36
Alignment explanation
Indices: 71313389--71313462 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
71313379 ATCATATTTC
71313389 ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
1 ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
*
71313425 ATTTGTTTTACAAATATCTCAATTCTCATGCTTACT
1 ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
71313461 AT
1 AT
71313463 ATAAATAGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.19, G:0.04, T:0.47
Consensus pattern (36 bp):
ATTTGTTTTACAAATATCTCAATTCTCATACTTACT
Found at i:71314754 original size:12 final size:12
Alignment explanation
Indices: 71314737--71314806 Score: 60
Period size: 12 Copynumber: 6.2 Consensus size: 12
71314727 TTCTCCTTTC
71314737 TTTCTTTCTCTT
1 TTTCTTTCTCTT
*
71314749 TTTCTTTTTCATT
1 TTTCTTTCTC-TT
* *
71314762 TTGC-TTCTCTG
1 TTTCTTTCTCTT
71314773 TTTCTTTCT-TT
1 TTTCTTTCTCTT
*
71314784 TTT-TTTCT-AT
1 TTTCTTTCTCTT
71314794 TTTCTTT-TCTT
1 TTTCTTTCTCTT
71314805 TT
1 TT
71314807 ATTTCTTTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
10 10 0.22
11 14 0.30
12 17 0.37
13 5 0.11
ACGTcount: A:0.03, C:0.19, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTCTTTCTCTT
Found at i:71314811 original size:21 final size:21
Alignment explanation
Indices: 71314773--71314812 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
71314763 TGCTTCTCTG
*
71314773 TTTCTTTCTTTTTTTTTCTAT
1 TTTCTTTCTTTTTATTTCTAT
71314794 TTTCTTT-TCTTTTATTTCT
1 TTTCTTTCT-TTTTATTTCT
71314813 TTGTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTCTTTCTTTTTATTTCTAT
Found at i:71321409 original size:70 final size:70
Alignment explanation
Indices: 71321319--71321472 Score: 188
Period size: 70 Copynumber: 2.2 Consensus size: 70
71321309 ACCTATAGTT
* * * * *
71321319 CAAATTCAATAGAATATCACATATAGTTGAATATGCACATTCAAGT-TAACTTCATATAT-GACC
1 CAAATTCAATATAATATCACATATAATCGAATATGCAAATTCAA-TATAACTTCACATATAG-CC
71321382 GAATATA
64 GAATATA
* *
71321389 CAAATTCAATATAA-ACTCACATATAATCGAATATTCAAATTCAATATAACTTCACATGTAGCCG
1 CAAATTCAATATAATA-TCACATATAATCGAATATGCAAATTCAATATAACTTCACATATAGCCG
71321453 AATATA
65 AATATA
*
71321459 CAAGTTCAATATAA
1 CAAATTCAATATAA
71321473 GCTTACATGT
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
69 2 0.03
70 70 0.96
71 1 0.01
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.31
Consensus pattern (70 bp):
CAAATTCAATATAATATCACATATAATCGAATATGCAAATTCAATATAACTTCACATATAGCCGA
ATATA
Found at i:71321420 original size:35 final size:36
Alignment explanation
Indices: 71321366--71321480 Score: 137
Period size: 35 Copynumber: 3.3 Consensus size: 36
71321356 CATTCAAGTT
* *
71321366 AACTTCATATATGACCGAATATACAAATTCAATATA
1 AACTTCACATATAACCGAATATACAAATTCAATATA
* *
71321402 AAC-TCACATATAATCGAATATTCAAATTCAATAT-
1 AACTTCACATATAACCGAATATACAAATTCAATATA
* * *
71321436 AACTTCACATGTAGCCGAATATACAAGTTCAATATA
1 AACTTCACATATAACCGAATATACAAATTCAATATA
*
71321472 AGCTT-ACAT
1 AACTTCACAT
71321481 GTACTTACCC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
34 3 0.04
35 57 0.85
36 7 0.10
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.30
Consensus pattern (36 bp):
AACTTCACATATAACCGAATATACAAATTCAATATA
Found at i:71328724 original size:35 final size:35
Alignment explanation
Indices: 71328634--71328787 Score: 89
Period size: 35 Copynumber: 4.4 Consensus size: 35
71328624 ACCTATAGTT
* * * **
71328634 CAAATTCAATAGAATA-TCACATATAGCCGACTATG
1 CAAATTCAATATAA-ACTCACATATAACCGAATACA
* *
71328669 CACATTCAAGT-T-AACTTCACATATGACCGAATACA
1 CAAATTCAA-TATAAAC-TCACATATAACCGAATACA
* ** **
71328704 CAAATTCAATATAAACTCACATGTAATTGAATATT
1 CAAATTCAATATAAACTCACATATAACCGAATACA
* ** * * *
71328739 CAAATTCAATATAACCTCACATGCAGCCAAATATA
1 CAAATTCAATATAAACTCACATATAACCGAATACA
*
71328774 CAAGTTCAATATAA
1 CAAATTCAATATAA
71328788 GCTTACATGT
Statistics
Matches: 92, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
33 1 0.01
34 2 0.02
35 85 0.92
36 4 0.04
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (35 bp):
CAAATTCAATATAAACTCACATATAACCGAATACA
Found at i:71331799 original size:33 final size:33
Alignment explanation
Indices: 71331762--71331831 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 33
71331752 TATTTATACA
71331762 ATTATAATATT-TTATT-TAAATT-AGTAGATATTT
1 ATTAT-ATATTATTATTAT-AATTAAG-AGATATTT
*
71331795 ATTATTTATTATTATTATAATTAAGAGATATTT
1 ATTATATATTATTATTATAATTAAGAGATATTT
71331828 ATTA
1 ATTA
71331832 ATTAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 4 0.12
33 26 0.79
34 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (33 bp):
ATTATATATTATTATTATAATTAAGAGATATTT
Found at i:71331853 original size:33 final size:33
Alignment explanation
Indices: 71331751--71331853 Score: 82
Period size: 33 Copynumber: 3.0 Consensus size: 33
71331741 TGTAATGATA
* * *
71331751 ATATTTATACAATTATAATATTTTATTTAAATTAGTAG
1 ATATTTAT-TAATTATAATA-ATTA--TAAATAAG-AG
* * * *
71331789 ATATTTATTATTTATTATTATTATAATTAAGAG
1 ATATTTATTAATTATAATAATTATAAATAAGAG
71331822 ATATTTATTAATTA-AATAATTATAAAATAAGA
1 ATATTTATTAATTATAATAATTAT-AAATAAGA
71331854 TTTTTATGTG
Statistics
Matches: 53, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
32 7 0.13
33 22 0.42
34 6 0.11
36 3 0.06
37 7 0.13
38 8 0.15
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.49
Consensus pattern (33 bp):
ATATTTATTAATTATAATAATTATAAATAAGAG
Found at i:71333139 original size:45 final size:45
Alignment explanation
Indices: 71333090--71333193 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
71333080 ATGTGCCGAC
*
71333090 TACTGTTACTGTTACTGTTACCGATTC-GACACTTTGTATGTCAAA
1 TACTGTTACTGTTACTGTTACAGATTCAG-CACTTTGTATGTCAAA
* **
71333135 TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTATGTCAAA
71333180 TACTGTTACTGTTA
1 TACTGTTACTGTTA
71333194 TTGCTACTAC
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
45 53 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTATGTCAAA
Found at i:71336509 original size:19 final size:19
Alignment explanation
Indices: 71336485--71336522 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
71336475 TATACCGAAT
71336485 TAATTGTTGAGATATTAAC
1 TAATTGTTGAGATATTAAC
71336504 TAATTGTTGAGATATTAAC
1 TAATTGTTGAGATATTAAC
71336523 CATTACACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (19 bp):
TAATTGTTGAGATATTAAC
Found at i:71336676 original size:29 final size:30
Alignment explanation
Indices: 71336601--71336713 Score: 88
Period size: 29 Copynumber: 3.9 Consensus size: 30
71336591 TGATATCCAC
* * *
71336601 CACCGATACATAGTACCTAGAAA-TAT-AT
1 CACCAATACATAGTACTTGGAAACTATAAT
* * * * *
71336629 CACCGACATAGAGTGCTTGGAAACTATAA-
1 CACCAATACATAGTACTTGGAAACTATAAT
*
71336658 CACCAATACATAGTACTTGGAAACTGTAAT
1 CACCAATACATAGTACTTGGAAACTATAAT
*** *
71336688 CACTGGTACATAGTACCTGGAAACTA
1 CACCAATACATAGTACTTGGAAACTA
71336714 ATATCAACGG
Statistics
Matches: 65, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
28 17 0.26
29 26 0.40
30 22 0.34
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (30 bp):
CACCAATACATAGTACTTGGAAACTATAAT
Found at i:71341983 original size:29 final size:28
Alignment explanation
Indices: 71341936--71342008 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 28
71341926 GTGATTTTGA
*
71341936 GTAAAAATGCATATTAGGGATTAAATTAT
1 GTAAAAATG-AAATTAGGGATTAAATTAT
* *
71341965 G-AAAAATGTAAATTGAGGGGTTAAATTTT
1 GTAAAAATG-AAATT-AGGGATTAAATTAT
71341994 GTAATAAATGAAATT
1 GTAA-AAATGAAATT
71342009 TTTTGGCTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 11 0.30
29 14 0.38
30 7 0.19
31 5 0.14
ACGTcount: A:0.45, C:0.01, G:0.19, T:0.34
Consensus pattern (28 bp):
GTAAAAATGAAATTAGGGATTAAATTAT
Found at i:71343890 original size:28 final size:28
Alignment explanation
Indices: 71343850--71343907 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
71343840 AAATGTTGGA
71343850 AAATTTTCTAAGTTTCCCAAAGTTTGCT
1 AAATTTTCTAAGTTTCCCAAAGTTTGCT
71343878 AAATTTTCTAAGTTTCCCAAAGTTTGCT
1 AAATTTTCTAAGTTTCCCAAAGTTTGCT
71343906 AA
1 AA
71343908 TGTTATCAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.41
Consensus pattern (28 bp):
AAATTTTCTAAGTTTCCCAAAGTTTGCT
Found at i:71346289 original size:26 final size:26
Alignment explanation
Indices: 71346222--71346294 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
71346212 TTTCATCCCA
*
71346222 ATTTTACCCCTAGCAAAATTTTGTCG
1 ATTTTACCCCTAGTAAAATTTTGTCG
* * *
71346248 ATTTTAGCCTTGGTAAAATTTTGAT-G
1 ATTTTACCCCTAGTAAAATTTTG-TCG
*
71346274 ATTTTTCCCCTAGTAAAATTT
1 ATTTTACCCCTAGTAAAATTT
71346295 CTAGAAAATA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
26 37 0.97
27 1 0.03
ACGTcount: A:0.27, C:0.16, G:0.12, T:0.44
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGTCG
Found at i:71346470 original size:24 final size:24
Alignment explanation
Indices: 71346442--71346491 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
71346432 TGCAAATGGA
* *
71346442 TCATTTACATTTCCGTTTTCATTT
1 TCATTTACATTTCCATTTCCATTT
71346466 TCATTTACATTTCCATTTCCATTT
1 TCATTTACATTTCCATTTCCATTT
71346490 TC
1 TC
71346492 GGAAACCTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.02, T:0.56
Consensus pattern (24 bp):
TCATTTACATTTCCATTTCCATTT
Found at i:71346482 original size:18 final size:18
Alignment explanation
Indices: 71346442--71346489 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
71346432 TGCAAATGGA
* *
71346442 TCATTTACATTTCCGTTT
1 TCATTTACATTTACATTT
*
71346460 TCATTTTCATTTACATTT
1 TCATTTACATTTACATTT
* *
71346478 CCATTTCCATTT
1 TCATTTACATTT
71346490 TCGGAAACCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.19, C:0.23, G:0.02, T:0.56
Consensus pattern (18 bp):
TCATTTACATTTACATTT
Found at i:71348507 original size:27 final size:27
Alignment explanation
Indices: 71348477--71348532 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
71348467 TATTTACTAG
*
71348477 CCCAACGAACTATACCGTGTTTAGTGT
1 CCCAACGAACTATACCATGTTTAGTGT
* * *
71348504 CCCATCGGACTATCCCATGTTTAGTGT
1 CCCAACGAACTATACCATGTTTAGTGT
71348531 CC
1 CC
71348533 TATTAGACTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.30, G:0.18, T:0.30
Consensus pattern (27 bp):
CCCAACGAACTATACCATGTTTAGTGT
Found at i:71348541 original size:27 final size:27
Alignment explanation
Indices: 71348485--71348544 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
71348475 AGCCCAACGA
* * *
71348485 ACTATACCGTGTTTAGTGTCCCATCGG
1 ACTATCCCATGTTTAGTGTCCCATCAG
* *
71348512 ACTATCCCATGTTTAGTGTCCTATTAG
1 ACTATCCCATGTTTAGTGTCCCATCAG
71348539 ACTATC
1 ACTATC
71348545 TATGATGTCG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (27 bp):
ACTATCCCATGTTTAGTGTCCCATCAG
Found at i:71348838 original size:44 final size:43
Alignment explanation
Indices: 71348750--71348839 Score: 108
Period size: 44 Copynumber: 2.1 Consensus size: 43
71348740 TCTGGCATGC
* * *
71348750 TTTCATATGATGCCATAACATCTTTCAGCTATGGTCTTACTCA
1 TTTCATATGATGCCATAACATCTTTCAGCTACGCTCCTACTCA
* * * *
71348793 TTTCATCATGATGCCATAGCATCTTTTAGTTACGCTCCTATTCA
1 TTTCAT-ATGATGCCATAACATCTTTCAGCTACGCTCCTACTCA
71348837 TTT
1 TTT
71348840 TAGGCGTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 6 0.15
44 33 0.85
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.42
Consensus pattern (43 bp):
TTTCATATGATGCCATAACATCTTTCAGCTACGCTCCTACTCA
Found at i:71349599 original size:37 final size:37
Alignment explanation
Indices: 71349524--71349608 Score: 91
Period size: 37 Copynumber: 2.3 Consensus size: 37
71349514 GGTCCCCAAA
* * * **
71349524 ATTATTATTTTAGAAATTTTTCAAAATTTTAACTTTTT
1 ATTA-TATTTTAGAAATTTTTAAAAAATATAAAATTTT
71349562 ATATATATTTTAG-AATTTTTAAAAAATATAAAATTTT
1 AT-TATATTTTAGAAATTTTTAAAAAATATAAAATTTT
*
71349599 ATTTTATTTT
1 ATTATATTTT
71349609 TATAAATATT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
36 7 0.17
37 21 0.52
38 10 0.25
39 2 0.05
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (37 bp):
ATTATATTTTAGAAATTTTTAAAAAATATAAAATTTT
Found at i:71349637 original size:19 final size:19
Alignment explanation
Indices: 71349597--71349641 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
71349587 ATATAAAATT
* *
71349597 TTATTTT-ATTTTTATAAA
1 TTATTTTGAATTTTAAAAA
71349615 -TATTTTGAATTTTAAAAA
1 TTATTTTGAATTTTAAAAA
71349633 TTATTTTGA
1 TTATTTTGA
71349642 TTTATTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 6 0.26
18 9 0.39
19 8 0.35
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
TTATTTTGAATTTTAAAAA
Found at i:71350374 original size:2 final size:2
Alignment explanation
Indices: 71350369--71350401 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
71350359 CACACACTTC
71350369 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
71350402 CCATTGGCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:71356430 original size:21 final size:21
Alignment explanation
Indices: 71356406--71356450 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
71356396 AATGATTCCC
71356406 CAACACCAGTCAAT-AGTTGGT
1 CAACACCAGTCAATGA-TTGGT
* *
71356427 CAACTCTAGTCAATGATTGGT
1 CAACACCAGTCAATGATTGGT
71356448 CAA
1 CAA
71356451 AGTCAACAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (21 bp):
CAACACCAGTCAATGATTGGT
Found at i:71356520 original size:26 final size:28
Alignment explanation
Indices: 71356480--71356535 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 28
71356470 TATCTAAATA
**
71356480 TTTAATATTATAATTTTCTATTTCTATT
1 TTTAATATTATAATTTAATATTTCTATT
*
71356508 TTTAAT-TTA-AATTTAATATTTTTATT
1 TTTAATATTATAATTTAATATTTCTATT
71356534 TT
1 TT
71356536 AAGTAGATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 16 0.64
27 3 0.12
28 6 0.24
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (28 bp):
TTTAATATTATAATTTAATATTTCTATT
Found at i:71357170 original size:4 final size:5
Alignment explanation
Indices: 71357151--71357190 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
71357141 ATTAAAAATC
71357151 TTATT TTATT TT-TAT TTATT TTATT TTATT TTGATT TTAT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TT-ATT TTAT
71357191 ATTAAATTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 1 0.03
5 25 0.78
6 6 0.19
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:71357171 original size:15 final size:14
Alignment explanation
Indices: 71357151--71357181 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
71357141 ATTAAAAATC
71357151 TTATTTTATTTTTAT
1 TTATTTTA-TTTTAT
71357166 TTATTTTATTTTAT
1 TTATTTTATTTTAT
71357180 TT
1 TT
71357182 TGATTTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTATTTTATTTTAT
Found at i:71358388 original size:21 final size:21
Alignment explanation
Indices: 71358348--71358396 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
71358338 AAGTGTAAAA
* *
71358348 AATAAAA-AAATTTAATAATT
1 AATAAAAGAAATATAAAAATT
*
71358368 TATAAAAGAAATATAAAAATT
1 AATAAAAGAAATATAAAAATT
71358389 AATAAAAG
1 AATAAAAG
71358397 GCGTATATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (21 bp):
AATAAAAGAAATATAAAAATT
Found at i:71361096 original size:27 final size:29
Alignment explanation
Indices: 71361047--71361112 Score: 100
Period size: 28 Copynumber: 2.3 Consensus size: 29
71361037 GGTAGTACAC
71361047 AAAATTAAATATTTTTAACAAAAAA-ATT
1 AAAATTAAATATTTTTAACAAAAAATATT
* *
71361075 ATAATTAAAT-TTTTTAACAAAAAATGTT
1 AAAATTAAATATTTTTAACAAAAAATATT
71361103 AAAATTAAAT
1 AAAATTAAAT
71361113 GACCCGAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 14 0.41
28 20 0.59
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.38
Consensus pattern (29 bp):
AAAATTAAATATTTTTAACAAAAAATATT
Found at i:71372892 original size:22 final size:23
Alignment explanation
Indices: 71372867--71372909 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
71372857 AAAAAGTTAC
71372867 AAAATATTAATT-AAATTATTTT
1 AAAATATTAATTAAAATTATTTT
* *
71372889 AAAATTTTTATTAAAATTATT
1 AAAATATTAATTAAAATTATT
71372910 AACAGATGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AAAATATTAATTAAAATTATTTT
Found at i:71382546 original size:47 final size:47
Alignment explanation
Indices: 71382492--71382583 Score: 148
Period size: 47 Copynumber: 2.0 Consensus size: 47
71382482 ATTAAATTAA
* * * *
71382492 CCATTATTAGTAGGTTTGGTTTCATTTAAGTCATGCATATATATACG
1 CCATTATTAGCAGGTTTAGCTTCATTTAAGTCACGCATATATATACG
71382539 CCATTATTAGCAGGTTTAGCTTCATTTAAGTCACGCATATATATA
1 CCATTATTAGCAGGTTTAGCTTCATTTAAGTCACGCATATATATA
71382584 TTAATGCATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (47 bp):
CCATTATTAGCAGGTTTAGCTTCATTTAAGTCACGCATATATATACG
Found at i:71382658 original size:57 final size:53
Alignment explanation
Indices: 71382552--71382699 Score: 167
Period size: 52 Copynumber: 2.7 Consensus size: 53
71382542 TTATTAGCAG
* *
71382552 GTTTAGCTTCATTTAAGTCA--CGCATATATATATTAATGCATATATATATTGTTTTAT
1 GTTTAGCTTCATTTAAGTCATGCACATATATATATTAATGCA-ATATATA-----TTAC
* *
71382609 GTTTAGCTTCATTTAAGTTATGCACATATATATATTAATGC-ATATATATTCC
1 GTTTAGCTTCATTTAAGTCATGCACATATATATATTAATGCAATATATATTAC
*
71382661 GTTTAGCTTCATTTAAGTCATGCATATATATTATATTAA
1 GTTTAGCTTCATTTAAGTCATGCACATATA-TATATTAA
71382700 ATATAAAAAC
Statistics
Matches: 82, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
52 30 0.37
53 8 0.10
57 26 0.32
59 18 0.22
ACGTcount: A:0.32, C:0.11, G:0.10, T:0.46
Consensus pattern (53 bp):
GTTTAGCTTCATTTAAGTCATGCACATATATATATTAATGCAATATATATTAC
Found at i:71383524 original size:22 final size:22
Alignment explanation
Indices: 71383490--71383545 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
71383480 TTACTCAATT
**
71383490 ATAAGTTTCGTTAATATATTCG
1 ATAAGTTAAGTTAATATATTCG
* **
71383512 ATAAGTTAAGTTAGTATATTTT
1 ATAAGTTAAGTTAATATATTCG
71383534 ATAAG-TAAGTTA
1 ATAAGTTAAGTTA
71383546 CTCCATTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 7 0.24
22 22 0.76
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.45
Consensus pattern (22 bp):
ATAAGTTAAGTTAATATATTCG
Found at i:71386515 original size:22 final size:21
Alignment explanation
Indices: 71386472--71386513 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
71386462 CATGTAATTA
*
71386472 TTTAGTAGTAAATTATATTTG
1 TTTAGTAGTAAATAATATTTG
71386493 TTTATGTAGTTAAATAATATT
1 TTTA-GTAG-TAAATAATATT
71386514 GTACTTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 4 0.22
23 10 0.56
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (21 bp):
TTTAGTAGTAAATAATATTTG
Found at i:71393037 original size:22 final size:22
Alignment explanation
Indices: 71392967--71393037 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
71392957 CGGTGGTTGA
*
71392967 CGATGGTCGGTGGT-G-ACTTA
1 CGATGGTCGGTGGTGGAACTTG
*
71392987 CGATGGTCGGTAGTGGAACTTG
1 CGATGGTCGGTGGTGGAACTTG
* * *
71393009 TGGTGGTCGGTGGTGGAATTTG
1 CGATGGTCGGTGGTGGAACTTG
71393031 CGATGGT
1 CGATGGT
71393038 AAGATAACTG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 13 0.32
21 1 0.02
22 27 0.66
ACGTcount: A:0.14, C:0.11, G:0.44, T:0.31
Consensus pattern (22 bp):
CGATGGTCGGTGGTGGAACTTG
Found at i:71397442 original size:48 final size:48
Alignment explanation
Indices: 71397384--71397478 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
71397374 CACATAGTAA
* *
71397384 GATGCCAATGCCATATCCCAGATATGGTCTTACATAGGATCACATATT
1 GATGCCAATGCCATATCCCAGACATGGTCTTAAATAGGATCACATATT
* *
71397432 GATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGGATCACATAT
1 GATGCCAATGCCATATCCCAGACATGGTCTTAAATAGGATCACATAT
71397479 GGTCTTACTG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTAAATAGGATCACATATT
Found at i:71397492 original size:21 final size:22
Alignment explanation
Indices: 71397455--71397499 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
71397445 TGTCCCAGAC
71397455 ATGGTCTTAAATGGGATCACAT
1 ATGGTCTTAAATGGGATCACAT
*
71397477 ATGGTCTT-ACTGGGATCACAT
1 ATGGTCTTAAATGGGATCACAT
71397498 AT
1 AT
71397500 CGATGCCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (22 bp):
ATGGTCTTAAATGGGATCACAT
Found at i:71397517 original size:69 final size:70
Alignment explanation
Indices: 71397405--71397543 Score: 235
Period size: 69 Copynumber: 2.0 Consensus size: 70
71397395 CATATCCCAG
* *
71397405 ATATGGTCTTACATAGGATCACATATTGATGCCAATGCCATGTCCCAGACATGGTCTTAAATGGG
1 ATATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTAAATGGG
71397470 ATCAC
66 ATCAC
* *
71397475 ATATGGTCTTAC-TGGGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTACATGGG
1 ATATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTAAATGGG
71397539 ATCAC
66 ATCAC
71397544 GTATCGATGC
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
69 53 0.82
70 12 0.18
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (70 bp):
ATATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTAAATGGG
ATCAC
Found at i:71397531 original size:117 final size:117
Alignment explanation
Indices: 71397384--71397595 Score: 352
Period size: 117 Copynumber: 1.8 Consensus size: 117
71397374 CACATAGTAA
* * *
71397384 GATGCCAATGCCATATCCCAGATATGGTCTTACATAGGATCACATATTGATGCCAATGCCATGTC
1 GATGCCAATGCCATATCCCAGACATAGTCTTACATAGGATCACATATCGATGCCAATGCCATGTC
71397449 CCAGACATGGTCTTAAATGGGATCACATATGGTCTTACTGGGATCACATATC
66 CCAGACATGGTCTTAAATGGGATCACATATGGTCTTACTGGGATCACATATC
* * * *
71397501 GATGCCAATGCCATGTCCCAGACATAGTCTTACATGGGATCACGTATCGATGCCAATGTCATGTC
1 GATGCCAATGCCATATCCCAGACATAGTCTTACATAGGATCACATATCGATGCCAATGCCATGTC
*
71397566 CCAGACATGGTCTTACATGGGATCACATAT
66 CCAGACATGGTCTTAAATGGGATCACATAT
71397596 CAATGCCAAT
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
117 87 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (117 bp):
GATGCCAATGCCATATCCCAGACATAGTCTTACATAGGATCACATATCGATGCCAATGCCATGTC
CCAGACATGGTCTTAAATGGGATCACATATGGTCTTACTGGGATCACATATC
Found at i:71397549 original size:48 final size:48
Alignment explanation
Indices: 71397477--71397643 Score: 282
Period size: 48 Copynumber: 3.5 Consensus size: 48
71397467 GGGATCACAT
*
71397477 ATGGTCTTAC-TGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAGAC
* *
71397524 ATAGTCTTACATGGGATCACGTATCGATGCCAATGTCATGTCCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAGAC
* *
71397572 ATGGTCTTACATGGGATCACATATCAATGCCAATGTCATGTTCCAGAC
1 ATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAGAC
71397620 ATGGTCTTACATGGGATCACATAT
1 ATGGTCTTACATGGGATCACATAT
71397644 AACTCTAATG
Statistics
Matches: 112, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
47 9 0.08
48 103 0.92
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAGAC
Found at i:71403902 original size:48 final size:48
Alignment explanation
Indices: 71403833--71403972 Score: 226
Period size: 48 Copynumber: 2.9 Consensus size: 48
71403823 TAGGGTTATG
* *
71403833 TGTGATCCCATGTAAGACCATGTCTGGGGCATGGCATTGGCATTGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
71403881 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTAGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
71403929 AGTGATCCCATGTACGACCATGTCTGGGACATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
71403973 TTACTATGTG
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:71406115 original size:18 final size:18
Alignment explanation
Indices: 71406088--71406123 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
71406078 TAAATATCTC
*
71406088 GGTCGGACTACTCTTCAT
1 GGTCGAACTACTCTTCAT
71406106 GGTCGAACTACTCTTCAT
1 GGTCGAACTACTCTTCAT
71406124 TGTTGGACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.33
Consensus pattern (18 bp):
GGTCGAACTACTCTTCAT
Found at i:71410382 original size:26 final size:26
Alignment explanation
Indices: 71410353--71410437 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
71410343 TTATCATTCA
71410353 TCAACTTATGAAACATATAAGTCAGT
1 TCAACTTATGAAACATATAAGTCAGT
* * * *
71410379 TCAATTCTATCATCAACCATTATCATTCA--
1 TCAA--CT-T-ATGAAACA-TATAAGTCAGT
71410408 TCAACTTATGAAACATATAAGTCAGT
1 TCAACTTATGAAACATATAAGTCAGT
71410434 TCAA
1 TCAA
71410438 TTCTATCACT
Statistics
Matches: 44, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
24 7 0.16
25 6 0.14
26 9 0.20
27 2 0.05
28 2 0.05
29 5 0.11
30 6 0.14
31 7 0.16
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (26 bp):
TCAACTTATGAAACATATAAGTCAGT
Found at i:71410405 original size:55 final size:55
Alignment explanation
Indices: 71410336--71410445 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
71410326 TCAATTTTTG
71410336 TCAACCATTATCATTCATCAACTTATGAAACATATAAGTCAGTTCAATTCTATCA
1 TCAACCATTATCATTCATCAACTTATGAAACATATAAGTCAGTTCAATTCTATCA
71410391 TCAACCATTATCATTCATCAACTTATGAAACATATAAGTCAGTTCAATTCTATCA
1 TCAACCATTATCATTCATCAACTTATGAAACATATAAGTCAGTTCAATTCTATCA
71410446 CTTTAGGTTC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (55 bp):
TCAACCATTATCATTCATCAACTTATGAAACATATAAGTCAGTTCAATTCTATCA
Found at i:71412998 original size:3 final size:3
Alignment explanation
Indices: 71412990--71413016 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
71412980 TTTGAAAAAT
71412990 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
71413017 TTAACATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:71413108 original size:3 final size:3
Alignment explanation
Indices: 71413100--71413271 Score: 129
Period size: 3 Copynumber: 57.3 Consensus size: 3
71413090 TCTAAAAAGA
* * *
71413100 AAT AAT AAT AAT AAT AAT -AG AAT AAT AAT -AG AAT AAAG AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* * * *
71413144 AAT ACATT AAT AAT AAT AAT AAT AAT AAT AGT AGT AGT AA- AGAC AAT
1 AAT A-A-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* * * * * *
71413191 AAT AAT AAG AAT GAT AAT AAT AAT ACT ACT ACT AAT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
71413239 AAT AGT AAT AAT AAT AGAT -TT AAT AAT AA- AAT A
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT A
71413272 GCCAAAATTA
Statistics
Matches: 138, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
2 6 0.04
3 123 0.89
4 7 0.05
5 2 0.01
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:71417807 original size:26 final size:26
Alignment explanation
Indices: 71417771--71417878 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
71417761 TGAAATTCCA
71417771 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
71417797 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
71417823 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71417849 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71417875 ATCA
1 ATCA
71417879 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:71419241 original size:6 final size:6
Alignment explanation
Indices: 71419231--71419263 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
71419221 TATCTTATTT
*
71419231 TTCTAT TTCTAG TTCTAG TTCTAG TTCTAG TTC
1 TTCTAG TTCTAG TTCTAG TTCTAG TTCTAG TTC
71419264 ATAGCCTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.18, G:0.12, T:0.55
Consensus pattern (6 bp):
TTCTAG
Found at i:71425682 original size:14 final size:14
Alignment explanation
Indices: 71425663--71425689 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
71425653 GCTTTTAGTT
71425663 TAATTTTTCTTTTC
1 TAATTTTTCTTTTC
71425677 TAATTTTTCTTTT
1 TAATTTTTCTTTT
71425690 GTTTGGTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (14 bp):
TAATTTTTCTTTTC
Found at i:71429787 original size:30 final size:30
Alignment explanation
Indices: 71429753--71429813 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
71429743 TCCTTAACTC
71429753 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
71429783 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
71429813 A
1 A
71429814 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:71431953 original size:46 final size:46
Alignment explanation
Indices: 71431901--71432219 Score: 466
Period size: 46 Copynumber: 7.0 Consensus size: 46
71431891 TGATGTCATA
* * * *
71431901 GTATCTTTCAACTATAGTCTTACTCATTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCA-TTTCATATCATGTTGCCATG
* * * *
71431947 GTATCTTTCAACCATGGTCGTGTTCATTTCATGTCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
71431993 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
* *
71432039 GTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
71432085 GTATCTTTCAACCATGGTCTTATTCATTTTC-TATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTATTCA-TTTCATATCATGTTGCCATG
** *
71432131 GTATCTTTCAACCATGGTCTTACACATTTCATATCATGATGCCATG
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
*
71432177 GTATCTTTCAACCATGATCTTA--CATTTCATATCATGTTGCCAT
1 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCAT
71432220 TGTAACAGCC
Statistics
Matches: 251, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
44 20 0.08
45 8 0.03
46 219 0.87
47 4 0.02
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
Found at i:71445889 original size:259 final size:259
Alignment explanation
Indices: 71445430--71445947 Score: 937
Period size: 259 Copynumber: 2.0 Consensus size: 259
71445420 CAGAGAATAC
* ** **
71445430 TCGAAGACGGCCATCGGAATCAACTCGAAAGTTGGATCTACTTCAAGACTGGAAACCTCCATTCA
1 TCGAAGACAGCCATCGGAATCAACTCGAAAGCAGGATCTACTTCAAGACTAAAAACCTCCATTCA
71445495 ATTTCATTAGAAGTTCTTTGGGTTTCTTTATGTTTCGTTGTTTTCCCAATTTTGAGATGTTGTCC
66 ATTTCATTAGAAGTTCTTTGGGTTTCTTTATGTTTCGTTGTTTTCCCAATTTTGAGATGTTGTCC
* *
71445560 CCCATCGTTATGAACTGAACTCCCTAAGTACCTAAGGGAGATGAAACCTAAGACAGATCTTATTA
131 CCCATCGTTATGAACTAAACTCCCTAAGTACCTAAAGGAGATGAAACCTAAGACAGATCTTATTA
*
71445625 TTATTTGAATTATATGATAAGTACTTGTTCTTACTCTTAATTATGTGTTCTTAATTCTTGCTTT
196 TTATTTGAATTATATGATAAATACTTGTTCTTACTCTTAATTATGTGTTCTTAATTCTTGCTTT
* *
71445689 TCGAAGACAGCCATCGGAATCAGCTCGGAAGCAGGATCTACTTCAAGACTAAAAACCTCCATTCA
1 TCGAAGACAGCCATCGGAATCAACTCGAAAGCAGGATCTACTTCAAGACTAAAAACCTCCATTCA
*
71445754 ATTTCATTAGAAGTTCTTTGGGTTTCTTTATGTTTCGTTGTTTTCCTAATTTTGAGATGTTGTCC
66 ATTTCATTAGAAGTTCTTTGGGTTTCTTTATGTTTCGTTGTTTTCCCAATTTTGAGATGTTGTCC
71445819 CCCATCGTTATGAACTAAACTCCCTAAGTACCTAAAGGAGATGAAACCTAAGACAGATCTTATTA
131 CCCATCGTTATGAACTAAACTCCCTAAGTACCTAAAGGAGATGAAACCTAAGACAGATCTTATTA
71445884 TTATTTGAATTATATGATAAATACTTGTTCTTACTCTTAATTATGTGTTCTTAATTCTTGCTTT
196 TTATTTGAATTATATGATAAATACTTGTTCTTACTCTTAATTATGTGTTCTTAATTCTTGCTTT
71445948 AATATTTCAG
Statistics
Matches: 248, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
259 248 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (259 bp):
TCGAAGACAGCCATCGGAATCAACTCGAAAGCAGGATCTACTTCAAGACTAAAAACCTCCATTCA
ATTTCATTAGAAGTTCTTTGGGTTTCTTTATGTTTCGTTGTTTTCCCAATTTTGAGATGTTGTCC
CCCATCGTTATGAACTAAACTCCCTAAGTACCTAAAGGAGATGAAACCTAAGACAGATCTTATTA
TTATTTGAATTATATGATAAATACTTGTTCTTACTCTTAATTATGTGTTCTTAATTCTTGCTTT
Found at i:71450280 original size:10 final size:10
Alignment explanation
Indices: 71450261--71450293 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
71450251 AATATATTTT
71450261 AAAA-ATTCA
1 AAAACATTCA
71450270 AAAACATTCA
1 AAAACATTCA
71450280 AAAACATTCA
1 AAAACATTCA
71450290 AAAA
1 AAAA
71450294 AAAATTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.67, C:0.15, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAACATTCA
Found at i:71453437 original size:31 final size:30
Alignment explanation
Indices: 71453377--71453452 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
71453367 GTAGATTTAG
* *
71453377 TCCTTATACTTT-AATTTGATCAATTTTAA
1 TCCTTATATTTTCAATTTGATCAATGTTAA
* *
71453406 TCCTTATAGTTTTCAATTTGGTTAATGTTAA
1 TCCTTATA-TTTTCAATTTGATCAATGTTAA
*
71453437 TCCTTGTACTTTTCAA
1 TCCTTATA-TTTTCAA
71453453 AATTTGAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 8 0.21
30 3 0.08
31 28 0.72
ACGTcount: A:0.26, C:0.14, G:0.08, T:0.51
Consensus pattern (30 bp):
TCCTTATATTTTCAATTTGATCAATGTTAA
Found at i:71456720 original size:18 final size:18
Alignment explanation
Indices: 71456699--71456733 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71456689 TAATATTATA
71456699 AAATAAAATAATTATTTC
1 AAATAAAATAATTATTTC
* *
71456717 AAATATAATTATTATTT
1 AAATAAAATAATTATTT
71456734 TTATATGTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATAAAATAATTATTTC
Found at i:71458385 original size:31 final size:33
Alignment explanation
Indices: 71458322--71458396 Score: 93
Period size: 31 Copynumber: 2.4 Consensus size: 33
71458312 TGGGCCAGGC
71458322 CATGTGAG-CCACACGAGCAAGGCGAATATGGG
1 CATGTGAGCCCACACGAGCAAGGCGAATATGGG
* * *
71458354 CGTGTGAGCCCACACGGGCAA-GC-CATATGGG
1 CATGTGAGCCCACACGAGCAAGGCGAATATGGG
*
71458385 CATGTGGGCCCA
1 CATGTGAGCCCA
71458397 AATTTTTGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
31 17 0.46
32 9 0.24
33 11 0.30
ACGTcount: A:0.25, C:0.27, G:0.35, T:0.13
Consensus pattern (33 bp):
CATGTGAGCCCACACGAGCAAGGCGAATATGGG
Found at i:71459980 original size:8 final size:8
Alignment explanation
Indices: 71459967--71460001 Score: 52
Period size: 8 Copynumber: 4.1 Consensus size: 8
71459957 TTTTAAAGAT
71459967 TTTTTTAA
1 TTTTTTAA
71459975 TTTTTTAA
1 TTTTTTAA
71459983 TAATTTTTAA
1 T--TTTTTAA
71459993 TTTTTTAA
1 TTTTTTAA
71460001 T
1 T
71460002 AGTTTTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 17 0.68
10 8 0.32
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TTTTTTAA
Found at i:71459989 original size:18 final size:18
Alignment explanation
Indices: 71459968--71460012 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
71459958 TTTAAAGATT
71459968 TTTTTAATTTTTTAATAA
1 TTTTTAATTTTTTAATAA
*
71459986 TTTTTAATTTTTTAATAG
1 TTTTTAATTTTTTAATAA
71460004 TTTTATAAT
1 TTTT-TAAT
71460013 ATTTGAAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTTAATTTTTTAATAA
Found at i:71460007 original size:11 final size:10
Alignment explanation
Indices: 71459942--71460016 Score: 57
Period size: 11 Copynumber: 7.5 Consensus size: 10
71459932 CTTGGACATG
*
71459942 TATTTTTCAA
1 TATTTTTTAA
71459952 TAATTTTTTAAA
1 T-ATTTTTT-AA
* *
71459964 GATTTTTTTA
1 TATTTTTTAA
71459974 -ATTTTTTAA
1 TATTTTTTAA
*
71459983 TAATTTTT-A
1 TATTTTTTAA
71459992 -ATTTTTTAA
1 TATTTTTTAA
*
71460001 TAGTTTTATAA
1 TA-TTTTTTAA
71460012 TATTT
1 TATTT
71460017 GAAACCACAT
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
8 6 0.12
9 10 0.19
10 12 0.23
11 22 0.42
12 2 0.04
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (10 bp):
TATTTTTTAA
Found at i:71461144 original size:23 final size:22
Alignment explanation
Indices: 71461110--71461182 Score: 58
Period size: 25 Copynumber: 3.0 Consensus size: 22
71461100 TATTTTAACT
*
71461110 TTTTAAAATTTATAATTATATA
1 TTTTAAATTTTATAATTATATA
*
71461132 TTTTAGAATTTTATAAAAATT-TATT
1 TTTTA-AATTTTAT---AATTATATA
71461157 TTTTAAAATTTATATATATTATATA
1 TTTT-AAATTT-TATA-ATTATATA
71461182 T
1 T
71461183 GATATTTTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
22 5 0.12
23 8 0.20
24 3 0.08
25 16 0.40
26 8 0.20
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (22 bp):
TTTTAAATTTTATAATTATATA
Found at i:71469980 original size:26 final size:26
Alignment explanation
Indices: 71469951--71470003 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
71469941 TTTACAGTTT
71469951 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTA-GAGATAAATTGACCGAAA
* * *
71469977 TACCCTTAGAGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
71470003 T
1 T
71470004 GAATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Done.