Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 218 of 253
Found at i:71714353 original size:9 final size:9
Alignment explanation
Indices: 71714339--71714363 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
71714329 GAAATATTTA
71714339 TTTTAATAT
1 TTTTAATAT
71714348 TTTTAATAT
1 TTTTAATAT
71714357 TTTTAAT
1 TTTTAAT
71714364 GTATTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTAATAT
Found at i:71715021 original size:31 final size:30
Alignment explanation
Indices: 71714974--71715033 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
71714964 TATTTTTTTG
*
71714974 TTAATTTTCTTATTATTTTA-AAGACATTTA
1 TTAATTTTATTATTATTTTAGAA-ACATTTA
71715004 TTAATTTTTATTATTATTTTAGAAACATTT
1 TTAA-TTTTATTATTATTTTAGAAACATTT
71715034 GTTTATTCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 4 0.15
31 21 0.78
32 2 0.07
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAGAAACATTTA
Found at i:71719108 original size:9 final size:9
Alignment explanation
Indices: 71719094--71719142 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
71719084 AACTTGAGAA
71719094 AATTAAGAG
1 AATTAAGAG
71719103 AATTAAGAG
1 AATTAAGAG
* *
71719112 AGTTGAGAG
1 AATTAAGAG
*
71719121 -ATTAGAAAG
1 AATTA-AGAG
71719130 AATTAAGAG
1 AATTAAGAG
71719139 AATT
1 AATT
71719143 GGATTTGAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
8 2 0.06
9 26 0.81
10 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (9 bp):
AATTAAGAG
Found at i:71719117 original size:27 final size:27
Alignment explanation
Indices: 71719087--71719139 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
71719077 AGAACAGAAC
*
71719087 TTGAGAAAATTA-AGAGAATTAAGAGAG
1 TTGAG-AAATTAGAAAGAATTAAGAGAG
*
71719114 TTGAGAGATTAGAAAGAATTAAGAGA
1 TTGAGAAATTAGAAAGAATTAAGAGA
71719140 ATTGGATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (27 bp):
TTGAGAAATTAGAAAGAATTAAGAGAG
Found at i:71727207 original size:28 final size:28
Alignment explanation
Indices: 71727145--71727209 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
71727135 TCAGTGCACG
*
71727145 AAATATTGAGAATGGCACATAATGTGCA
1 AAATATTGAGAATGACACATAATGTGCA
** * *
71727173 AGTTATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACATAATGTGCA
71727201 AAATATTGA
1 AAATATTGA
71727210 ATGATTAAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACATAATGTGCA
Found at i:71727326 original size:39 final size:39
Alignment explanation
Indices: 71727282--71727533 Score: 434
Period size: 39 Copynumber: 6.5 Consensus size: 39
71727272 AACTTTATAA
*
71727282 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
71727321 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
71727360 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
71727399 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
71727438 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* * *
71727477 TGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGCCCCGAAGGCATTCGTGC
*
71727516 TGGTATTATATCCGGGCT
1 TGGTGTTATATCCGGGCT
71727534 TAAAGTCCCG
Statistics
Matches: 207, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
39 196 0.95
40 11 0.05
ACGTcount: A:0.17, C:0.24, G:0.31, T:0.28
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:71728797 original size:16 final size:16
Alignment explanation
Indices: 71728759--71728804 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
71728749 AAAAAAATTG
*
71728759 ATGAAGAAAA-T-AAG
1 ATGAAGAAAAGTAAAA
*
71728773 ATAAAGAAAAGTAAAA
1 ATGAAGAAAAGTAAAA
*
71728789 ATGAAGAAATGTAAAA
1 ATGAAGAAAAGTAAAA
71728805 GGAAAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 9 0.35
15 1 0.04
16 16 0.62
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.15
Consensus pattern (16 bp):
ATGAAGAAAAGTAAAA
Found at i:71743031 original size:47 final size:47
Alignment explanation
Indices: 71742964--71743118 Score: 148
Period size: 47 Copynumber: 3.1 Consensus size: 47
71742954 ATGAATCACT
* * * * *
71742964 TATCTCACTGATGTCATATCCCAAATATGGTCTTATACAGTAGCATA
1 TATCACACCGATGCCATATCCCAAATATGGTCTTATACAGAAGCACA
*
71743011 TATCACACCGATGCCATATCCCAAATATAGTCTTATACAGAAGCACA
1 TATCACACCGATGCCATATCCCAAATATGGTCTTATACAGAAGCACA
** * * *
71743058 TAATCACATCTCTCCGATGCCATAGGCCAACTATGGTCTTATACGGAAATCACA
1 T-ATCACA-----CCGATGCCATATCCCAAATATGGTCTTATACAG-AAGCACA
71743112 TATCACA
1 TATCACA
71743119 TGTTGCCATG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
47 42 0.47
48 6 0.07
53 34 0.38
54 7 0.08
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (47 bp):
TATCACACCGATGCCATATCCCAAATATGGTCTTATACAGAAGCACA
Found at i:71745040 original size:23 final size:23
Alignment explanation
Indices: 71745010--71745053 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
71745000 GACAATAAAC
71745010 TTTAGGATAAGACGTGTATTTAA
1 TTTAGGATAAGACGTGTATTTAA
* *
71745033 TTTAGGATAGGATGTGTATTT
1 TTTAGGATAAGACGTGTATTT
71745054 GGCATCCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.25, T:0.43
Consensus pattern (23 bp):
TTTAGGATAAGACGTGTATTTAA
Found at i:71750144 original size:11 final size:10
Alignment explanation
Indices: 71750130--71750190 Score: 52
Period size: 11 Copynumber: 5.9 Consensus size: 10
71750120 ATTTTTTTAA
71750130 TATTATTTTC
1 TATTATTTTC
*
71750140 TTATTTTTTTC
1 -TATTATTTTC
*
71750151 TCTT-TTTTC
1 TATTATTTTC
71750160 TATTATTTTAC
1 TATTATTTT-C
*
71750171 TATTATGTTAC
1 TATTAT-TTTC
*
71750182 TATAATTTT
1 TATTATTTT
71750191 ATTATTATTA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
9 8 0.20
10 9 0.22
11 22 0.54
12 2 0.05
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.69
Consensus pattern (10 bp):
TATTATTTTC
Found at i:71753899 original size:44 final size:44
Alignment explanation
Indices: 71753844--71753954 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 44
71753834 GAGGGTAGGA
*
71753844 TATGCTATGTTATAAGATATGCTCTGATATGAAATCTGATATGC
1 TATGATATGTTATAAGATATGCTCTGATATGAAATCTGATATGC
* ** * * *
71753888 TATGATATGTTATAAGTTATATTTTGTTATGAAATCTTATATGC
1 TATGATATGTTATAAGATATGCTCTGATATGAAATCTGATATGC
* *
71753932 TATGATATGTTGTAAGATGTGCT
1 TATGATATGTTATAAGATATGCT
71753955 TCAATATGAA
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.31, C:0.07, G:0.18, T:0.44
Consensus pattern (44 bp):
TATGATATGTTATAAGATATGCTCTGATATGAAATCTGATATGC
Found at i:71758656 original size:26 final size:26
Alignment explanation
Indices: 71758620--71758703 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
71758610 CATGAAATTC
71758620 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
71758646 TTATCATGAAACATTTACCTAACCGA
1 TTATCATGAAACATTTACCTAACCCA
* *
71758672 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
71758698 TTATCA
1 TTATCA
71758704 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:71760509 original size:20 final size:18
Alignment explanation
Indices: 71760462--71760517 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
71760452 ATTCATCCAC
*
71760462 TAAGTTACTTAATTACAAT
1 TAAGTTAATTAATTA-AAT
71760481 TAAGTTTAATTAATTAAACTT
1 TAAG-TTAATTAATTAAA--T
*
71760502 TAAGTTAAATAATTAA
1 TAAGTTAATTAATTAA
71760518 CGTTTATTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 6 0.19
20 21 0.66
21 5 0.16
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (18 bp):
TAAGTTAATTAATTAAAT
Found at i:71762230 original size:38 final size:38
Alignment explanation
Indices: 71762179--71762251 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
71762169 TGAATGCTTG
*
71762179 AAGTATTGATGATGAATGCTTTGATGAGAAGTTTAGTT
1 AAGTATTGATGATGAATGCTTCGATGAGAAGTTTAGTT
71762217 AAGTATTGATGATGAATGCTTCGATGAGAAGTTTA
1 AAGTATTGATGATGAATGCTTCGATGAGAAGTTTA
71762252 TGTGGTAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (38 bp):
AAGTATTGATGATGAATGCTTCGATGAGAAGTTTAGTT
Found at i:71764963 original size:100 final size:100
Alignment explanation
Indices: 71764786--71764985 Score: 294
Period size: 100 Copynumber: 2.0 Consensus size: 100
71764776 GGGGTCACAC
* * *
71764786 GGCCGTGTGGCCAGGATGTGTGACATAGCCCAGGCCTTGTAACAATCGAACTAGGGACACACAGC
1 GGCCGTGTGACCAGGACGTGTGACATAGCCCAGGCCGTGTAACAATCGAACTAGGGACACACAGC
*
71764851 CGTGTTCCAGCCTATGTCCTCAAC-CATGTAACTCA
66 CATGTTCCAGCCTATGTCCTC-ACTCATGTAACTCA
* *
71764886 GGCCGTGTGACCAGGACGTGTGACATAGCCTAGGCCGTGTAACAATCGAACTAGGGACACACGGC
1 GGCCGTGTGACCAGGACGTGTGACATAGCCCAGGCCGTGTAACAATCGAACTAGGGACACACAGC
** * *
71764951 CATGTTTTAGCCTGTGTCCTCACTCGTGTAACTCA
66 CATGTTCCAGCCTATGTCCTCACTCATGTAACTCA
71764986 CTAAACAAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 2 0.02
100 87 0.98
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (100 bp):
GGCCGTGTGACCAGGACGTGTGACATAGCCCAGGCCGTGTAACAATCGAACTAGGGACACACAGC
CATGTTCCAGCCTATGTCCTCACTCATGTAACTCA
Found at i:71781236 original size:18 final size:18
Alignment explanation
Indices: 71781213--71781276 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
71781203 GAACAATTAA
* *
71781213 TTATTTAGTAATAGTCAG
1 TTATTCAGTAATAATCAG
** * *
71781231 TTATTTGGTAACAATCAA
1 TTATTCAGTAATAATCAG
*
71781249 TTATTCAATAATAATCAG
1 TTATTCAGTAATAATCAG
71781267 TTATTCAGTA
1 TTATTCAGTA
71781277 TCAATCAACT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42
Consensus pattern (18 bp):
TTATTCAGTAATAATCAG
Found at i:71781282 original size:18 final size:18
Alignment explanation
Indices: 71781227--71781283 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
71781217 TTAGTAATAG
** *
71781227 TCAGTTATTTGGTAACAA
1 TCAGTTATTCAGTATCAA
* *
71781245 TCAATTATTCAATAAT-AA
1 TCAGTTATTCAGT-ATCAA
71781263 TCAGTTATTCAGTATCAA
1 TCAGTTATTCAGTATCAA
71781281 TCA
1 TCA
71781284 ACTAATCGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
17 2 0.07
18 27 0.90
19 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (18 bp):
TCAGTTATTCAGTATCAA
Found at i:71781282 original size:36 final size:36
Alignment explanation
Indices: 71781191--71781284 Score: 100
Period size: 36 Copynumber: 2.6 Consensus size: 36
71781181 TTCATTAACG
* * * * *
71781191 ATCAGTCAATCAG-AACAATTAATTATTTAGTAATA
1 ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
* **
71781226 GTCAGTTATTTGGTAACAATCAATTATTCAATAATA
1 ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
*
71781262 ATCAGTTATTCAGTATCAATCAA
1 ATCAGTTATTCAGTAACAATCAA
71781285 CTAATCGGTT
Statistics
Matches: 46, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
35 8 0.17
36 38 0.83
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (36 bp):
ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
Found at i:71781290 original size:26 final size:24
Alignment explanation
Indices: 71781253--71781302 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
71781243 AATCAATTAT
*
71781253 TCAATAATAATCAGTTATTCAGTA
1 TCAATAATAATCAGTTATCCAGTA
*
71781277 TCAATCAACTAATCGGTTATCCAGTA
1 TCAAT-AA-TAATCAGTTATCCAGTA
71781303 ACAGTCAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 2 0.09
26 15 0.68
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (24 bp):
TCAATAATAATCAGTTATCCAGTA
Found at i:71781310 original size:26 final size:26
Alignment explanation
Indices: 71781260--71781319 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
71781250 TATTCAATAA
* *
71781260 TAATCAGTTATTCAGTATCAATCAAC
1 TAATCAGTTATCCAGTAACAATCAAC
* * *
71781286 TAATCGGTTATCCAGTAACAGTCAAT
1 TAATCAGTTATCCAGTAACAATCAAC
*
71781312 TATTCAGT
1 TAATCAGT
71781320 AAAAATCAGA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (26 bp):
TAATCAGTTATCCAGTAACAATCAAC
Found at i:71781358 original size:19 final size:19
Alignment explanation
Indices: 71781293--71781360 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 19
71781283 AACTAATCGG
* *
71781293 TTATCCAGTAACAGTC-AA
1 TTATTCAGTAACAATCAAA
* *
71781311 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCAAA
* *
71781330 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
71781348 TTATTCAGTAACA
1 TTATTCAGTAACA
71781361 GTCGATCTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
18 27 0.69
19 12 0.31
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.31
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:71781542 original size:53 final size:53
Alignment explanation
Indices: 71781482--71781606 Score: 205
Period size: 53 Copynumber: 2.4 Consensus size: 53
71781472 TCGGAACAGT
*
71781482 AACAGTAACAGTAGCAGTACGGTACACAGAGTACCTAATCGGAACAAATCCGA
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTAATCGGAACAAATCCGA
* * *
71781535 AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCGGAACAAATTCGA
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTAATCGGAACAAATCCGA
*
71781588 AACAGTAACGGTAACAGTA
1 AACAGTAACAGTAACAGTA
71781607 ATAGTAGTCG
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 66 1.00
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACGGTACACAGAGTACCTAATCGGAACAAATCCGA
Found at i:71782657 original size:12 final size:12
Alignment explanation
Indices: 71782642--71782679 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
71782632 CAATTTTCCC
*
71782642 TTTCTTCTTTCT
1 TTTCTCCTTTCT
71782654 TTTCTCCTTTCT
1 TTTCTCCTTTCT
71782666 TTTCTCCTTTCT
1 TTTCTCCTTTCT
71782678 TT
1 TT
71782680 CTTTCTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTCTCCTTTCT
Found at i:71782687 original size:12 final size:13
Alignment explanation
Indices: 71782648--71782692 Score: 60
Period size: 12 Copynumber: 3.7 Consensus size: 13
71782638 TCCCTTTCTT
71782648 CTTTCTTT-TCTC
1 CTTTCTTTCTCTC
71782660 CTTTCTTT-TCTC
1 CTTTCTTTCTCTC
*
71782672 CTTTCTTTCT-TT
1 CTTTCTTTCTCTC
71782684 CTTTCTTTC
1 CTTTCTTTC
71782693 CCTGCTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 30 0.97
13 1 0.03
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (13 bp):
CTTTCTTTCTCTC
Found at i:71782930 original size:21 final size:21
Alignment explanation
Indices: 71782891--71782931 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
71782881 TTAATAATAA
*
71782891 TATATAATTTAATAATATACT
1 TATATAATTAAATAATATACT
71782912 TATATAA-TAAATAATTATAC
1 TATATAATTAAATAA-TATAC
71782932 ATGTATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (21 bp):
TATATAATTAAATAATATACT
Found at i:71784781 original size:29 final size:29
Alignment explanation
Indices: 71784739--71784973 Score: 299
Period size: 29 Copynumber: 8.1 Consensus size: 29
71784729 AAGCACAAAG
*
71784739 ACTTGGTGGACTCATACATGCAGATTCAT
1 ACTTGGTGAACTCATACATGCAGATTCAT
* **
71784768 ACTTGGTGGACTCATACATGTGGATTCAT
1 ACTTGGTGAACTCATACATGCAGATTCAT
* *** *
71784797 ACTTGGTGAACTTATACATATGGATTTAT
1 ACTTGGTGAACTCATACATGCAGATTCAT
* *
71784826 ACTTAGTGGACTCATACATGCAGATTCAT
1 ACTTGGTGAACTCATACATGCAGATTCAT
71784855 ACTTGGTGAACTCATACATGCAGATTCAT
1 ACTTGGTGAACTCATACATGCAGATTCAT
* * *
71784884 ACTTGGTGGACCCATATATGCAGATTCAT
1 ACTTGGTGAACTCATACATGCAGATTCAT
*
71784913 ACTTGGTGAACTCATACATACAGATTCAT
1 ACTTGGTGAACTCATACATGCAGATTCAT
* * * *
71784942 ACTTGGTGAACCCATATATGCGGATGCAT
1 ACTTGGTGAACTCATACATGCAGATTCAT
71784971 ACT
1 ACT
71784974 CACAATTTGT
Statistics
Matches: 179, Mismatches: 27, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 179 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (29 bp):
ACTTGGTGAACTCATACATGCAGATTCAT
Found at i:71785059 original size:29 final size:29
Alignment explanation
Indices: 71785027--71785091 Score: 114
Period size: 29 Copynumber: 2.2 Consensus size: 29
71785017 CAGATCCTTT
71785027 CTTGAAAAGTTAGT-TCATGCGGACTCTTG
1 CTTGAAAAGTTAGTCT-ATGCGGACTCTTG
71785056 CTTGAAAAGTTAGTCTATGCGGACTCTTG
1 CTTGAAAAGTTAGTCTATGCGGACTCTTG
71785085 CTTGAAA
1 CTTGAAA
71785092 GATAGTCCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 34 0.97
30 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (29 bp):
CTTGAAAAGTTAGTCTATGCGGACTCTTG
Found at i:71785108 original size:28 final size:29
Alignment explanation
Indices: 71784989--71785109 Score: 79
Period size: 29 Copynumber: 4.2 Consensus size: 29
71784979 TTTGTTCTTG
* * *
71784989 CAGACTCTTTCTTG-AAAGTTAGTTTC-TA
1 CAGACTCTTGCTTGAAAAGATAG-TCCATA
* * * *
71785017 CAGA-TCCTTTCTTGAAAAGTTAGTTCATG
1 CAGACT-CTTGCTTGAAAAGATAGTCCATA
* * * *
71785046 CGGACTCTTGCTTGAAAAGTTAGTCTATG
1 CAGACTCTTGCTTGAAAAGATAGTCCATA
*
71785075 CGGACTCTTGCTTG-AAAGATAGTCCATA
1 CAGACTCTTGCTTGAAAAGATAGTCCATA
*
71785103 TAGACTC
1 CAGACTC
71785110 CTATTTGGAT
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
27 1 0.01
28 31 0.39
29 46 0.58
30 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (29 bp):
CAGACTCTTGCTTGAAAAGATAGTCCATA
Found at i:71785157 original size:41 final size:41
Alignment explanation
Indices: 71785100--71785181 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
71785090 AAGATAGTCC
71785100 ATATAGACTCCTATTTGGATGAATGTCCTTGTGGACTCATA
1 ATATAGACTCCTATTTGGATGAATGTCCTTGTGGACTCATA
71785141 ATATAGACTCCTATTTGGATGAATGTCCTTGTGGACTCATA
1 ATATAGACTCCTATTTGGATGAATGTCCTTGTGGACTCATA
71785182 CTTGAAGGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (41 bp):
ATATAGACTCCTATTTGGATGAATGTCCTTGTGGACTCATA
Found at i:71785241 original size:56 final size:56
Alignment explanation
Indices: 71785174--71785282 Score: 150
Period size: 56 Copynumber: 1.9 Consensus size: 56
71785164 TGTCCTTGTG
* *
71785174 GACTCATACTTGAAGGAATTTC-CCTGTG-GACTAATACTTGGAGAAATGTCCCTACT
1 GACTCATACTTGAAGGAA-TGCACCTGCGAG-CTAATACTTGGAGAAATGTCCCTACT
* *
71785230 GACTCATACTTGGAGGAATGCACCTGCGAGCTAATACTTGGAGGAATGTCCCT
1 GACTCATACTTGAAGGAATGCACCTGCGAGCTAATACTTGGAGAAATGTCCCT
71785283 GCAAACTCAT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
55 2 0.04
56 44 0.94
57 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (56 bp):
GACTCATACTTGAAGGAATGCACCTGCGAGCTAATACTTGGAGAAATGTCCCTACT
Found at i:71785294 original size:28 final size:28
Alignment explanation
Indices: 71785155--71785295 Score: 124
Period size: 28 Copynumber: 5.0 Consensus size: 28
71785145 AGACTCCTAT
* * * *
71785155 TTGGATGAATGTCCTTGTGGACTCATAC
1 TTGGAGGAATGTCCCTGCGAACTCATAC
* * * * *
71785183 TTGAAGGAATTTCCCTGTGGACTAATAC
1 TTGGAGGAATGTCCCTGCGAACTCATAC
* *
71785211 TTGGAGAAATGTCCCTACTG-ACTCATAC
1 TTGGAGGAATGTCCCTGC-GAACTCATAC
* *
71785239 TTGGAGGAATG-CACCTGCGAGCTAATAC
1 TTGGAGGAATGTC-CCTGCGAACTCATAC
*
71785267 TTGGAGGAATGTCCCTGCAAACTCATAC
1 TTGGAGGAATGTCCCTGCGAACTCATAC
71785295 T
1 T
71785296 AGTAACTTGA
Statistics
Matches: 91, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
27 2 0.02
28 87 0.96
29 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (28 bp):
TTGGAGGAATGTCCCTGCGAACTCATAC
Found at i:71799662 original size:25 final size:21
Alignment explanation
Indices: 71799612--71799654 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
71799602 AATTATGAAG
71799612 TTAAAAGGCATCACAGTTCTT
1 TTAAAAGGCATCACAGTTCTT
71799633 TTAAAAGGCATCACAGTTCTT
1 TTAAAAGGCATCACAGTTCTT
71799654 T
1 T
71799655 CTTATAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (21 bp):
TTAAAAGGCATCACAGTTCTT
Found at i:71804093 original size:6 final size:6
Alignment explanation
Indices: 71804077--71804130 Score: 90
Period size: 6 Copynumber: 9.0 Consensus size: 6
71804067 TTGTGGATTT
*
71804077 GTTTTC ATTTTC GTTTTC GTTTTC GTTTTC GTTTTC GTTTTC GTTTTC
1 GTTTTC GTTTTC GTTTTC GTTTTC GTTTTC GTTTTC GTTTTC GTTTTC
*
71804125 ATTTTC
1 GTTTTC
71804131 TTTATGCCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.04, C:0.17, G:0.13, T:0.67
Consensus pattern (6 bp):
GTTTTC
Found at i:71807199 original size:23 final size:25
Alignment explanation
Indices: 71807173--71807218 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
71807163 TATCATTCAT
*
71807173 TTCATTATAT-CA-ATATTTTATAC
1 TTCATCATATCCATATATTTTATAC
*
71807196 TTCATCATTTCCATATATTTTAT
1 TTCATCATATCCATATATTTTAT
71807219 GTATATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 2 0.11
25 9 0.47
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.54
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATAC
Found at i:71807648 original size:46 final size:46
Alignment explanation
Indices: 71807480--71807699 Score: 251
Period size: 46 Copynumber: 5.0 Consensus size: 46
71807470 TTTAACGTGA
* * * * * *
71807480 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
71807526 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
71807572 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
71807618 TGCCATGGTATCTTTCAACCATGGT-TT-TACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
71807656 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
71807700 AGAGCACACT
Statistics
Matches: 152, Mismatches: 13, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
38 30 0.20
39 3 0.02
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 7 0.05
46 104 0.68
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:71807664 original size:38 final size:38
Alignment explanation
Indices: 71807613--71807688 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
71807603 CATCTCATAT
*
71807613 CAGGTTGCCATGGTATCTTTCAACCATGGTTTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
71807651 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
71807689 TTTCATATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:71807851 original size:25 final size:25
Alignment explanation
Indices: 71807823--71807879 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
71807813 CTGCAACGAC
*
71807823 AATTACTCTAATGAACTTGGATCTG
1 AATTACCCTAATGAACTTGGATCTG
*
71807848 AATTACCCTAATGAGCTTGGATCTG
1 AATTACCCTAATGAACTTGGATCTG
71807873 AATTACC
1 AATTACC
71807880 AGTCCAGGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (25 bp):
AATTACCCTAATGAACTTGGATCTG
Found at i:71814520 original size:40 final size:40
Alignment explanation
Indices: 71814466--71814549 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
71814456 CGCCCAGTAC
71814466 CTCA-TCAGACAAATTGAAGTAATCCAACTGCACCCATAG
1 CTCATTCAGACAAATTGAAGTAATCCAACTGCACCCATAG
* * *
71814505 CTCATTCAGACAAATTGAAGTAATCCAATTGCGCCCATCG
1 CTCATTCAGACAAATTGAAGTAATCCAACTGCACCCATAG
71814545 CTCAT
1 CTCAT
71814550 CGATTTAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 4 0.10
40 37 0.90
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.24
Consensus pattern (40 bp):
CTCATTCAGACAAATTGAAGTAATCCAACTGCACCCATAG
Found at i:71822943 original size:30 final size:30
Alignment explanation
Indices: 71822907--71822965 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
71822897 TTTGTCATCC
* *
71822907 CGGATTGCTTGATAACAATGACTTACCACT
1 CGGATTGCTCGACAACAATGACTTACCACT
* *
71822937 CGGATTGCTCGACAATAATGGCTTACCAC
1 CGGATTGCTCGACAACAATGACTTACCAC
71822966 GCTACATTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (30 bp):
CGGATTGCTCGACAACAATGACTTACCACT
Found at i:71824726 original size:52 final size:53
Alignment explanation
Indices: 71824582--71824737 Score: 147
Period size: 52 Copynumber: 2.9 Consensus size: 53
71824572 TATGGTCTTA
* * *
71824582 CACAG-ATCACATATCATACCGATGCCATATCCCAGATATGGTCTTATACGGAAT
1 CACAGTATCACAT-T-ACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAT
* * ** * * * *
71824636 CACATTATCACATTATATTGATGCCTTGGCCCAACTATGGTCTTATATGGGAA-
1 CACAGTATCACATTACACCGATGCCATAGCCCAGCTATGGTCTTATA-CGGAAT
* *
71824689 CAC-GTATCACATTGCACCGATGCCATAGCCTAGCTATGGTCTTATACGG
1 CACAGTATCACATTACACCGATGCCATAGCCCAGCTATGGTCTTATACGG
71824738 GCATAAATAT
Statistics
Matches: 81, Mismatches: 19, Indels: 7
0.76 0.18 0.07
Matches are distributed among these distances:
51 2 0.02
52 34 0.42
53 29 0.36
54 9 0.11
55 7 0.09
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (53 bp):
CACAGTATCACATTACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAT
Found at i:71827160 original size:23 final size:23
Alignment explanation
Indices: 71827134--71827195 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
71827124 AAAAAAATTT
71827134 AGAATATGCCACAAAGGCATTAC
1 AGAATATGCCACAAAGGCATTAC
* * *
71827157 AGAATCTGCAACTAAGGCATTAC
1 AGAATATGCCACAAAGGCATTAC
* *
71827180 GGAATACGCCACAAAG
1 AGAATATGCCACAAAG
71827196 ACCCTATTTG
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16
Consensus pattern (23 bp):
AGAATATGCCACAAAGGCATTAC
Found at i:71828246 original size:29 final size:29
Alignment explanation
Indices: 71828204--71828278 Score: 150
Period size: 29 Copynumber: 2.6 Consensus size: 29
71828194 ACAAAGCCAA
71828204 CACACACGCCCGTGTGCCCTAAAAATGGC
1 CACACACGCCCGTGTGCCCTAAAAATGGC
71828233 CACACACGCCCGTGTGCCCTAAAAATGGC
1 CACACACGCCCGTGTGCCCTAAAAATGGC
71828262 CACACACGCCCGTGTGC
1 CACACACGCCCGTGTGC
71828279 TAGGCCGTGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.25, C:0.40, G:0.21, T:0.13
Consensus pattern (29 bp):
CACACACGCCCGTGTGCCCTAAAAATGGC
Found at i:71829453 original size:46 final size:46
Alignment explanation
Indices: 71829376--71829499 Score: 176
Period size: 46 Copynumber: 2.7 Consensus size: 46
71829366 CTCGCACCCT
* * *
71829376 AAGTGCCAATACATAGCCGAAGCTATTTCAATGAATCTTACACACG
1 AAGTGCCAATACATAGCTGAAGCTATCTCAATGAATCTCACACACG
* * **
71829422 AAGTGCCAATACATAGCTGAATCTATGTCAATGAATCTCGTACACG
1 AAGTGCCAATACATAGCTGAAGCTATCTCAATGAATCTCACACACG
*
71829468 AAGTGCCAATGCATAGCTGAAGCTATCTCAAT
1 AAGTGCCAATACATAGCTGAAGCTATCTCAAT
71829500 TATGCTCACT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (46 bp):
AAGTGCCAATACATAGCTGAAGCTATCTCAATGAATCTCACACACG
Found at i:71832504 original size:50 final size:51
Alignment explanation
Indices: 71832445--71832544 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 51
71832435 AAAAGAACTA
71832445 AATTGCATTAACCAATTGAAAGTTTAAGCTTTG-AAATCCCTAGGATGAAC
1 AATTGCATTAACCAATTGAAAGTTTAAGCTTTGAAAATCCCTAGGATGAAC
71832495 AATTGCATTAACCAATTGAAAGTTTAAGCTTTGAAAATCCCTAGGATGAA
1 AATTGCATTAACCAATTGAAAGTTTAAGCTTTGAAAATCCCTAGGATGAA
71832545 ACTTTTCTCT
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 33 0.67
51 16 0.33
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (51 bp):
AATTGCATTAACCAATTGAAAGTTTAAGCTTTGAAAATCCCTAGGATGAAC
Found at i:71835574 original size:49 final size:49
Alignment explanation
Indices: 71835495--71835682 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 49
71835485 TAGCCGAAGC
* * *
71835495 TATCTGGTACGCATAGTAGCTTGCAATTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * *** *
71835544 AATCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACATGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
71835595 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
** *
71835644 TATCCAGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
71835683 CGTGACCTCA
Statistics
Matches: 113, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 73 0.65
50 2 0.02
51 38 0.34
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:71835614 original size:100 final size:100
Alignment explanation
Indices: 71835500--71835683 Score: 314
Period size: 100 Copynumber: 1.8 Consensus size: 100
71835490 GAAGCTATCT
* **
71835500 GGTACGCATAGTAGCTTGCAATTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCAATTAGTACTACACATGCGACCAATAATCCAGTACACGTAGTAGCC
*
71835565 TGCATTTAGTACTACACACATGATCACAGTTTTCG
66 TGCACTTAGTACTACACACATGATCACAGTTTTCG
* *
71835600 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCAATTAGTACTACACATGCGACCAATAATCCAGTACACGTAGTAGCC
71835665 TGCACTTAGTACTACACAC
66 TGCACTTAGTACTACACAC
71835684 GTGACCTCAC
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCAATTAGTACTACACATGCGACCAATAATCCAGTACACGTAGTAGCC
TGCACTTAGTACTACACACATGATCACAGTTTTCG
Found at i:71845880 original size:24 final size:22
Alignment explanation
Indices: 71845853--71845896 Score: 52
Period size: 22 Copynumber: 1.9 Consensus size: 22
71845843 ATTTGTTAAT
71845853 TTTACTATTTAAATATATAAAATA
1 TTTA-TATTTAAAT-TATAAAATA
* *
71845877 TTTATTTTTACATTATAAAA
1 TTTATATTTAAATTATAAAA
71845897 ATTGTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 7 0.39
24 4 0.22
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTATATTTAAATTATAAAATA
Found at i:71849094 original size:3 final size:3
Alignment explanation
Indices: 71849086--71849120 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
71849076 TTATATTCTT
71849086 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
71849121 TTCATTCTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:71849696 original size:14 final size:15
Alignment explanation
Indices: 71849675--71849716 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
71849665 CGTAAATGAC
71849675 TAAAATATAACATT-
1 TAAAATATAACATTA
*
71849689 TCAAATATAA-ATTA
1 TAAAATATAACATTA
71849703 CTAAAATATAACAT
1 -TAAAATATAACAT
71849717 GAGATAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 3 0.13
14 9 0.39
15 9 0.39
16 2 0.09
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAAATATAACATTA
Found at i:71849711 original size:15 final size:15
Alignment explanation
Indices: 71849667--71849713 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
71849657 TACGTTAACG
*
71849667 TAAATGACTAAAATA
1 TAAATTACTAAAATA
*
71849682 TAACATT--TCAAATA
1 TAA-ATTACTAAAATA
71849696 TAAATTACTAAAATA
1 TAAATTACTAAAATA
71849711 TAA
1 TAA
71849714 CATGAGATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
13 3 0.12
14 9 0.35
15 12 0.46
16 2 0.08
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (15 bp):
TAAATTACTAAAATA
Found at i:71852829 original size:31 final size:31
Alignment explanation
Indices: 71852794--71852852 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
71852784 GTTCGTTTTG
*
71852794 ATTTTTCTATGTATTACTTATGTTAAAATAT
1 ATTTTTCTATATATTACTTATGTTAAAATAT
* * *
71852825 ATTTTTTTATATATTATTTATTTTAAAA
1 ATTTTTCTATATATTACTTATGTTAAAA
71852853 CTTTTATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (31 bp):
ATTTTTCTATATATTACTTATGTTAAAATAT
Found at i:71859139 original size:28 final size:29
Alignment explanation
Indices: 71859098--71859167 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
71859088 AAATATTTAA
*
71859098 TTAATTTATTAAAATA-ATTTTAAAATTTT
1 TTAATTT-TTAAAAAATATTTTAAAATTTT
* *
71859127 TT-ATTTTTAAAAAATATTTTATATTTTT
1 TTAATTTTTAAAAAATATTTTAAAATTTT
71859155 TTGAATTTTTAAA
1 TT-AATTTTTAAA
71859168 TTTTAAGTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 7 0.20
28 17 0.49
29 2 0.06
30 9 0.26
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (29 bp):
TTAATTTTTAAAAAATATTTTAAAATTTT
Found at i:71861388 original size:6 final size:6
Alignment explanation
Indices: 71861379--71861408 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
71861369 CAATGCCAAC
71861379 GCTAAG GCTAAG GCTAAG GCTAAG GCTAAG
1 GCTAAG GCTAAG GCTAAG GCTAAG GCTAAG
71861409 CCATTGCGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.17
Consensus pattern (6 bp):
GCTAAG
Found at i:71862327 original size:20 final size:21
Alignment explanation
Indices: 71862294--71862336 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
71862284 ATTTGAATTA
71862294 TTTCAAGAGAAAAAATCTGAT
1 TTTCAAGAGAAAAAATCTGAT
71862315 TTTCAAGAG-AAAAATCTGAT
1 TTTCAAGAGAAAAAATCTGAT
71862335 TT
1 TT
71862337 GTCATTCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (21 bp):
TTTCAAGAGAAAAAATCTGAT
Found at i:71863742 original size:19 final size:19
Alignment explanation
Indices: 71863705--71863744 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
71863695 GATAGTATAG
* *
71863705 ATACATATATAATATATAT
1 ATACATATATAACAAATAT
71863724 ATACATATATAACAAATAT
1 ATACATATATAACAAATAT
71863743 AT
1 AT
71863745 TTATTAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (19 bp):
ATACATATATAACAAATAT
Found at i:71869441 original size:101 final size:101
Alignment explanation
Indices: 71869280--71869480 Score: 402
Period size: 101 Copynumber: 2.0 Consensus size: 101
71869270 CATGGTTTCT
71869280 TTTAAAAGAGAAAGAAGCTGAAATAAATCTTTCTTTATTCATGCTTTATGAATCTTTATTTTATG
1 TTTAAAAGAGAAAGAAGCTGAAATAAATCTTTCTTTATTCATGCTTTATGAATCTTTATTTTATG
71869345 GGATAATATAATTTTTAGTCCCTAAATTTGATAATC
66 GGATAATATAATTTTTAGTCCCTAAATTTGATAATC
71869381 TTTAAAAGAGAAAGAAGCTGAAATAAATCTTTCTTTATTCATGCTTTATGAATCTTTATTTTATG
1 TTTAAAAGAGAAAGAAGCTGAAATAAATCTTTCTTTATTCATGCTTTATGAATCTTTATTTTATG
71869446 GGATAATATAATTTTTAGTCCCTAAATTTGATAAT
66 GGATAATATAATTTTTAGTCCCTAAATTTGATAAT
71869481 TAGGTCTATT
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 100 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (101 bp):
TTTAAAAGAGAAAGAAGCTGAAATAAATCTTTCTTTATTCATGCTTTATGAATCTTTATTTTATG
GGATAATATAATTTTTAGTCCCTAAATTTGATAATC
Found at i:71870449 original size:10 final size:10
Alignment explanation
Indices: 71870434--71870499 Score: 61
Period size: 9 Copynumber: 6.9 Consensus size: 10
71870424 AATATTAATT
71870434 ATTATAAAAA
1 ATTATAAAAA
71870444 ATTAT-AAAA
1 ATTATAAAAA
71870453 ATTAT--AAA
1 ATTATAAAAA
71870461 A-TATAAAAGA
1 ATTATAAAA-A
*
71870471 ATTATGAAAA
1 ATTATAAAAA
71870481 ATTA-AAAAA
1 ATTATAAAAA
*
71870490 TTTATGAAAA
1 ATTAT-AAAA
71870500 GACTAGACTT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
7 3 0.06
8 4 0.09
9 18 0.38
10 12 0.26
11 10 0.21
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (10 bp):
ATTATAAAAA
Found at i:71870461 original size:18 final size:19
Alignment explanation
Indices: 71870434--71870491 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
71870424 AATATTAATT
71870434 ATTATAAAAAATTATAAAA
1 ATTATAAAAAATTATAAAA
*
71870453 ATTATAAAATA-TA-AAAGA
1 ATTATAAAAAATTATAAA-A
*
71870471 ATTATGAAAAATTA-AAAA
1 ATTATAAAAAATTATAAAA
71870489 ATT
1 ATT
71870492 TATGAAAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 3 0.09
18 16 0.47
19 15 0.44
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
ATTATAAAAAATTATAAAA
Found at i:71870490 original size:8 final size:8
Alignment explanation
Indices: 71870438--71870491 Score: 54
Period size: 8 Copynumber: 6.1 Consensus size: 8
71870428 TTAATTATTA
71870438 TAAAAAAT
1 TAAAAAAT
71870446 TATAAAAAT
1 TA-AAAAAT
*
71870455 TATAAAAT
1 TAAAAAAT
71870463 ATAAAAGAAT
1 -TAAAA-AAT
71870473 TATGAAAAAT
1 TA--AAAAAT
71870483 TAAAAAAT
1 TAAAAAAT
71870491 T
1 T
71870492 TATGAAAAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
8 14 0.36
9 14 0.36
10 8 0.21
11 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (8 bp):
TAAAAAAT
Found at i:71870494 original size:19 final size:18
Alignment explanation
Indices: 71870434--71870499 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 18
71870424 AATATTAATT
*
71870434 ATTATAAAAAATTATAAAA
1 ATTATGAAAAATTA-AAAA
71870453 ATTAT--AAAATATAAAAGA
1 ATTATGAAAAAT-TAAAA-A
71870471 ATTATGAAAAATTAAAAA
1 ATTATGAAAAATTAAAAA
71870489 ATTTATGAAAA
1 A-TTATGAAAA
71870500 GACTAGACTT
Statistics
Matches: 42, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
17 8 0.19
18 10 0.24
19 19 0.45
20 5 0.12
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (18 bp):
ATTATGAAAAATTAAAAA
Found at i:71872249 original size:6 final size:6
Alignment explanation
Indices: 71872238--71872262 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
71872228 ATTTACCGTG
71872238 TTTGGT TTTGGT TTTGGT TTTGGT T
1 TTTGGT TTTGGT TTTGGT TTTGGT T
71872263 CTCTCGAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (6 bp):
TTTGGT
Found at i:71876549 original size:3 final size:3
Alignment explanation
Indices: 71876536--71876579 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
71876526 CTTTTATACT
71876536 TAA TAAA TAA TAA TAA T-A TAA TAA -AA TAA TAA -AA TAA TAA -AA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
71876578 TA
1 TA
71876580 TCTTATTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
2 8 0.22
3 25 0.69
4 3 0.08
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:71876563 original size:13 final size:13
Alignment explanation
Indices: 71876536--71876579 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
71876526 CTTTTATACT
71876536 TAATAAATAATAA
1 TAATAAATAATAA
71876549 TAATATAATAA-AA
1 TAATA-AATAATAA
71876562 TAATAAAATAATAA
1 TAAT-AAATAATAA
71876576 -AATA
1 TAATA
71876580 TCTTATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
12 1 0.04
13 19 0.68
14 8 0.29
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
TAATAAATAATAA
Found at i:71876592 original size:26 final size:26
Alignment explanation
Indices: 71876563--71876633 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 26
71876553 ATAATAAAAT
71876563 AATAAAATAATAAAATATCTTAT-TAA
1 AATAAAATAATAAAATATCTTATCT-A
*
71876589 AATATTAATAA-AAAATAT-TTATCTA
1 AATA-AAATAATAAAATATCTTATCTA
* *
71876614 ATTAATAATTATAAAATATC
1 AATAA-AATAATAAAATATC
71876634 ATCAACATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
25 12 0.33
26 19 0.53
27 5 0.14
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATAATAAAATATCTTATCTA
Found at i:71876596 original size:8 final size:8
Alignment explanation
Indices: 71876544--71876579 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
71876534 CTTAATAAAT
71876544 AATAATAA
1 AATAATAA
*
71876552 TATAATAA
1 AATAATAA
71876560 AATAATAA
1 AATAATAA
71876568 AATAATAA
1 AATAATAA
71876576 AATA
1 AATA
71876580 TCTTATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
AATAATAA
Found at i:71876899 original size:30 final size:31
Alignment explanation
Indices: 71876831--71876889 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
71876821 CACCCTTAAA
* * *
71876831 ATATTTTCACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAGCCCCTCAAATTTTTC
71876862 ATATTTACACT-TTAGCCCCTCAAATTTT
1 ATATTTACACTATTAGCCCCTCAAATTTT
71876890 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.27, C:0.22, G:0.03, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAGCCCCTCAAATTTTTC
Found at i:71878147 original size:235 final size:235
Alignment explanation
Indices: 71877724--71878190 Score: 864
Period size: 235 Copynumber: 2.0 Consensus size: 235
71877714 GCAGTGGTAC
71877724 TGTATATCCCAAGTAGTTTTCAGAAAAATCTAATATCTCTATTCAGAACCCATCTTCACTTATTA
1 TGTATATCCCAAGTAGTTTTCAGAAAAATCTAATATCTCTATTCAGAACCCATCTTCACTTATTA
71877789 ACTCATTCTCAGTTTTGACTACATTATCAGTTGCTCCACTATTGAACTTTTTCACTTTCACAGTT
66 ACTCATTCTCAGTTTTGACTACATTATCAGTTGCTCCACTATTGAACTTTTTCACTTTCACAGTT
* *
71877854 TTGAACTTAATCAATATAAATTTCATAAATTTCATTGCATATAACTGTACCGGTAAGGGGGTAGA
131 TTGAACTTAATCAATATAAATTTCATAAATTTCATTGCATATAACTGTACCAGTAAGGGAGTAGA
71877919 GATTATAAAGCCTAATAATTTAATTTTCATGTATTTACAT
196 GATTATAAAGCCTAATAATTTAATTTTCATGTATTTACAT
*
71877959 TGTATATCCCAAGTAGTTTTCAGAAAAATCTAATATCTCTATTCAGAACTCATCTTCACTTATTA
1 TGTATATCCCAAGTAGTTTTCAGAAAAATCTAATATCTCTATTCAGAACCCATCTTCACTTATTA
71878024 ACTCATTCTCAGTTTTGACTACATTATCAGTTGCTCCACTATTGAACTTTTTCACTTTCACAGTT
66 ACTCATTCTCAGTTTTGACTACATTATCAGTTGCTCCACTATTGAACTTTTTCACTTTCACAGTT
* *
71878089 TTGAACTTAATCAATAT-AATTCTCATAAATTTCATTGCATATAATTGTACTAGTAAGGGAGTAG
131 TTGAACTTAATCAATATAAATT-TCATAAATTTCATTGCATATAACTGTACCAGTAAGGGAGTAG
*
71878153 AGATTATAAAGCCTCATAATTTAATTTTCATGTATTTA
195 AGATTATAAAGCCTAATAATTTAATTTTCATGTATTTA
71878191 ATCATAAAAT
Statistics
Matches: 225, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
234 4 0.02
235 221 0.98
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (235 bp):
TGTATATCCCAAGTAGTTTTCAGAAAAATCTAATATCTCTATTCAGAACCCATCTTCACTTATTA
ACTCATTCTCAGTTTTGACTACATTATCAGTTGCTCCACTATTGAACTTTTTCACTTTCACAGTT
TTGAACTTAATCAATATAAATTTCATAAATTTCATTGCATATAACTGTACCAGTAAGGGAGTAGA
GATTATAAAGCCTAATAATTTAATTTTCATGTATTTACAT
Found at i:71879391 original size:20 final size:21
Alignment explanation
Indices: 71879366--71879445 Score: 63
Period size: 21 Copynumber: 3.8 Consensus size: 21
71879356 TTATCAGTAT
*
71879366 ACGACAGAT-AAGTGCCTGAA
1 ACGACACATGAAGTGCCTGAA
* *
71879386 ACGACACATGAGGTGCCTGAT
1 ACGACACATGAAGTGCCTGAA
* * * *
71879407 ATGACACACGAGGTGCCTAAAA
1 ACGACACATGAAGTGCCT-GAA
*
71879429 TACGACACATAAAGTGC
1 -ACGACACATGAAGTGC
71879446 TTGATCGGCA
Statistics
Matches: 46, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
20 8 0.17
21 25 0.54
22 1 0.02
23 12 0.26
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.16
Consensus pattern (21 bp):
ACGACACATGAAGTGCCTGAA
Found at i:71879403 original size:21 final size:21
Alignment explanation
Indices: 71879377--71879438 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
71879367 CGACAGATAA
71879377 GTGCCTGAAACGACACATGAG
1 GTGCCTGAAACGACACATGAG
* * *
71879398 GTGCCTGATATGACACACGAG
1 GTGCCTGAAACGACACATGAG
*
71879419 GTGCCTAAAATACGACACAT
1 GTGCCT-GAA-ACGACACAT
71879439 AAAGTGCTTG
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
21 24 0.75
22 1 0.03
23 7 0.22
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (21 bp):
GTGCCTGAAACGACACATGAG
Found at i:71887831 original size:21 final size:21
Alignment explanation
Indices: 71887807--71887850 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
71887797 ATTTTTAATT
71887807 AATTGACTAACCAAACGTTAA
1 AATTGACTAACCAAACGTTAA
** * *
71887828 AATTTTCTAACGAAACTTTAA
1 AATTGACTAACCAAACGTTAA
71887849 AA
1 AA
71887851 CTAACTTAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.48, C:0.16, G:0.07, T:0.30
Consensus pattern (21 bp):
AATTGACTAACCAAACGTTAA
Found at i:71888703 original size:16 final size:15
Alignment explanation
Indices: 71888682--71888723 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
71888672 TTATATTGAG
*
71888682 TGATTATGTATTGATT
1 TGATTATGTATTG-TA
71888698 TGATTATG-ATTGTA
1 TGATTATGTATTGTA
71888712 TGATTCATGTAT
1 TGATT-ATGTAT
71888724 AATTTGAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 6 0.26
15 7 0.30
16 10 0.43
ACGTcount: A:0.26, C:0.02, G:0.19, T:0.52
Consensus pattern (15 bp):
TGATTATGTATTGTA
Found at i:71889282 original size:27 final size:27
Alignment explanation
Indices: 71889243--71889294 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
71889233 CAACATAGAG
* * *
71889243 AGTCCATCAGGACACTAAACCCAGGGT
1 AGTCCACCAGGACAATAAACACAGGGT
*
71889270 AGTCCACCGGGACAATAAACACAGG
1 AGTCCACCAGGACAATAAACACAGG
71889295 AAAGTCTGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.37, C:0.29, G:0.23, T:0.12
Consensus pattern (27 bp):
AGTCCACCAGGACAATAAACACAGGGT
Found at i:71889300 original size:27 final size:27
Alignment explanation
Indices: 71889243--71889300 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
71889233 CAACATAGAG
* * * **
71889243 AGTCCATCAGGACACTAAACCCAGGGT
1 AGTCCACCAGGACAATAAACACAGGAA
*
71889270 AGTCCACCGGGACAATAAACACAGGAA
1 AGTCCACCAGGACAATAAACACAGGAA
71889297 AGTC
1 AGTC
71889301 TGTCAATACG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.28, G:0.22, T:0.12
Consensus pattern (27 bp):
AGTCCACCAGGACAATAAACACAGGAA
Found at i:71892876 original size:46 final size:45
Alignment explanation
Indices: 71892816--71893035 Score: 237
Period size: 46 Copynumber: 4.8 Consensus size: 45
71892806 TATTTAGGCA
* * *
71892816 TCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATACGAAC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAC
* * * * * *
71892861 GTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTA-ACTAGGC
1 -TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACGA-AC
* *
71892908 ATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 -TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAC
*
71892954 TCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 T-CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAC
* *
71893000 TCCCGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTAT
1 T-CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
71893036 AGGCGGGTTA
Statistics
Matches: 149, Mismatches: 19, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
45 2 0.01
46 112 0.75
47 34 0.23
48 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAC
Found at i:71892920 original size:93 final size:93
Alignment explanation
Indices: 71892810--71892983 Score: 296
Period size: 93 Copynumber: 1.9 Consensus size: 93
71892800 TTCGGATATT
71892810 TAGGCATCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATACGAACGT-CCGAACTCGTT
1 TAGGCATCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATACGAAC-TCCCGAACTCGTT
71892874 GAGTTGAGTCCGAGTTCGTGAGATGTAAC
65 GAGTTGAGTCCGAGTTCGTGAGATGTAAC
* * * *
71892903 TAGGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTCCCGAGCTCGTTG
1 TAGGCATCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATACGAACTCCCGAACTCGTTG
71892968 AGTTGAGTCCGAGTTC
66 AGTTGAGTCCGAGTTC
71892984 ACTTATGGAT
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
TAGGCATCCGAACTCATTGAGTTAAGTCCGAGTTCACTTATGGATACGAACTCCCGAACTCGTTG
AGTTGAGTCCGAGTTCGTGAGATGTAAC
Found at i:71896768 original size:31 final size:31
Alignment explanation
Indices: 71896730--71896791 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
71896720 CTATGCATGC
71896730 TATATCTAAGATGGGCTAAGGCCCTAAGTTG
1 TATATCTAAGATGGGCTAAGGCCCTAAGTTG
71896761 TATATCTAAGATGGGCTAAGGCCCTAAGTTG
1 TATATCTAAGATGGGCTAAGGCCCTAAGTTG
71896792 CATCTGATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (31 bp):
TATATCTAAGATGGGCTAAGGCCCTAAGTTG
Found at i:71904568 original size:29 final size:29
Alignment explanation
Indices: 71904527--71904584 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
71904517 CCTTGTGTAG
71904527 GAGAGAACCATAATCCTTGACCATGTCAA
1 GAGAGAACCATAATCCTTGACCATGTCAA
71904556 GAGAGAACCATAATCCTTGACCATGTCAA
1 GAGAGAACCATAATCCTTGACCATGTCAA
71904585 TTATTGTACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (29 bp):
GAGAGAACCATAATCCTTGACCATGTCAA
Found at i:71913149 original size:18 final size:18
Alignment explanation
Indices: 71913113--71913150 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
71913103 GAAATATTTA
*
71913113 TTTTGATGTTTTTAGTAT
1 TTTTGATGTTTATAGTAT
71913131 TTTTGATGTATTATA-TAT
1 TTTTGATGT-TTATAGTAT
71913149 TT
1 TT
71913151 AAAAATAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.66
Consensus pattern (18 bp):
TTTTGATGTTTATAGTAT
Found at i:71915954 original size:47 final size:47
Alignment explanation
Indices: 71915845--71915955 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 47
71915835 CCGGGATAAG
* * * *
71915845 CACATAGTGCTTCATCGGAATAAATCTGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
71915892 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
71915939 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
71915956 ACTCAATGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.02
47 50 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:71925984 original size:29 final size:29
Alignment explanation
Indices: 71925934--71926003 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
71925924 CTTTACTAGT
* * *
71925934 AAAACGCGTCCAACACAACGCGCTGAAGA
1 AAAATGCGTCTAACACAACGCGATGAAGA
* * *
71925963 AAAATGCGTCTAACTCAGCGCGATGAGGA
1 AAAATGCGTCTAACACAACGCGATGAAGA
*
71925992 AAAATACGTCTA
1 AAAATGCGTCTA
71926004 GATTAGCACA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.14
Consensus pattern (29 bp):
AAAATGCGTCTAACACAACGCGATGAAGA
Found at i:71926104 original size:42 final size:42
Alignment explanation
Indices: 71926050--71926159 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
71926040 AATTGTTTAA
* *
71926050 TTAAGGTTTATTAAATTAGGGTTTTATTCTTTTAATTAGTAT
1 TTAAGGTTTATTAAATTAGGGTTTTAGTCTTTTAATTAATAT
* * * *
71926092 TTAAGGTTTATTAAATTAAGGTTTTAGTGTTTTATTTAATTT
1 TTAAGGTTTATTAAATTAGGGTTTTAGTCTTTTAATTAATAT
** *
71926134 TTATTGTTTATT-AATTAGTGTTTTAG
1 TTAAGGTTTATTAAATTAGGGTTTTAG
71926160 GGTTTTAGGA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
41 12 0.21
42 46 0.79
ACGTcount: A:0.27, C:0.01, G:0.15, T:0.57
Consensus pattern (42 bp):
TTAAGGTTTATTAAATTAGGGTTTTAGTCTTTTAATTAATAT
Found at i:71927453 original size:18 final size:18
Alignment explanation
Indices: 71927430--71927464 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
71927420 CAGGGGAAAG
*
71927430 AAAGAAGGAAGGAAAAAA
1 AAAGAAAGAAGGAAAAAA
71927448 AAAGAAAGAAGGAAAAA
1 AAAGAAAGAAGGAAAAA
71927465 GGGAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (18 bp):
AAAGAAAGAAGGAAAAAA
Found at i:71929573 original size:46 final size:46
Alignment explanation
Indices: 71929521--71929703 Score: 303
Period size: 46 Copynumber: 4.0 Consensus size: 46
71929511 GTGTGCTCTC
** *
71929521 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACT
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
**
71929567 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
71929613 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* *
71929659 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
71929704 ATGACAGAAA
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 132 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:71929709 original size:46 final size:46
Alignment explanation
Indices: 71929535--71929756 Score: 275
Period size: 46 Copynumber: 4.7 Consensus size: 46
71929525 ATGAAATGTG
* * * **
71929535 TAAGACCATGGTTGAAAGATACCATGGCAACTTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAA
* * *
71929581 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAA
*
71929627 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAA
71929673 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAATGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA-G-A--A
* * * *
71929722 GTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 -TAAGACCATGGTTGAAAGATACCATGGCAACATG
71929757 TCAAAGATAA
Statistics
Matches: 161, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
45 5 0.03
46 124 0.77
47 1 0.01
49 1 0.01
50 30 0.19
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAA
Found at i:71932337 original size:20 final size:20
Alignment explanation
Indices: 71932269--71932340 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
71932259 TTTAACTATA
* *
71932269 ATTAAATTTAATTACTTTAAT
1 ATTAAA-TTAATAAATTTAAT
71932290 ATTAAATT--T-AATTTAAT
1 ATTAAATTAATAAATTTAAT
*
71932307 ATCAAGA-TAATAAATTTAAT
1 ATTAA-ATTAATAAATTTAAT
71932327 ATTAAATTAATAAA
1 ATTAAATTAATAAA
71932341 ATACTATTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
17 12 0.28
18 2 0.05
19 2 0.05
20 21 0.49
21 6 0.14
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (20 bp):
ATTAAATTAATAAATTTAAT
Found at i:71937408 original size:22 final size:22
Alignment explanation
Indices: 71937382--71937428 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
71937372 AGTAAAAAAA
*
71937382 TTTAAGAAAGAATTTGAGATAT
1 TTTAAGAAAGAATTTGACATAT
* *
71937404 TTTAAGAGAGGATTTGACATAT
1 TTTAAGAAAGAATTTGACATAT
71937426 TTT
1 TTT
71937429 TTTAGAGTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (22 bp):
TTTAAGAAAGAATTTGACATAT
Found at i:71945901 original size:23 final size:23
Alignment explanation
Indices: 71945871--71945914 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
71945861 GTGACATAAT
71945871 TTTTTTTATTAATTTGGTATGAA
1 TTTTTTTATTAATTTGGTATGAA
71945894 TTTTTTTATTAATTTGGTATG
1 TTTTTTTATTAATTTGGTATG
71945915 TTGATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.14, T:0.64
Consensus pattern (23 bp):
TTTTTTTATTAATTTGGTATGAA
Found at i:71947161 original size:21 final size:21
Alignment explanation
Indices: 71947135--71947174 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
71947125 AAAATTACTA
71947135 TTTTTTTACTGTTTTCTTGCT
1 TTTTTTTACTGTTTTCTTGCT
*
71947156 TTTTTTTATTGTTTTCTTG
1 TTTTTTTACTGTTTTCTTG
71947175 TTGTTATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.10, G:0.10, T:0.75
Consensus pattern (21 bp):
TTTTTTTACTGTTTTCTTGCT
Found at i:71951826 original size:26 final size:26
Alignment explanation
Indices: 71951797--71951904 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
71951787 TGGTACAAAT
71951797 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* **
71951823 TGATAATGGATTAGGTAAATACTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
71951849 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
71951875 TGATAATGGTTTAGGTAAATGTTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
71951901 TGAT
1 TGAT
71951905 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:71955520 original size:12 final size:12
Alignment explanation
Indices: 71955503--71955529 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
71955493 TTTCCCTTTT
71955503 CTTTTTCTTTCC
1 CTTTTTCTTTCC
71955515 CTTTTTCTTTCC
1 CTTTTTCTTTCC
71955527 CTT
1 CTT
71955530 GTTTTGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (12 bp):
CTTTTTCTTTCC
Found at i:71955623 original size:8 final size:8
Alignment explanation
Indices: 71955610--71955636 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
71955600 TAATAGTAAT
71955610 ATAATATA
1 ATAATATA
71955618 ATAATATA
1 ATAATATA
71955626 ATAATATA
1 ATAATATA
71955634 ATA
1 ATA
71955637 TTATTTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:71955624 original size:13 final size:13
Alignment explanation
Indices: 71955599--71955637 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
71955589 TCATTTAATT
71955599 ATAATAGTAATATA
1 ATAATA-TAATATA
71955613 AT-ATAATAATATA
1 ATAAT-ATAATATA
71955626 ATAATATAATAT
1 ATAATATAATAT
71955638 TATTTTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 18 0.78
14 5 0.22
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (13 bp):
ATAATATAATATA
Found at i:71962078 original size:13 final size:13
Alignment explanation
Indices: 71962060--71962085 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71962050 AAGCATTGCA
71962060 TTTAATTAAAAGT
1 TTTAATTAAAAGT
71962073 TTTAATTAAAAGT
1 TTTAATTAAAAGT
71962086 ATTTTTCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTAATTAAAAGT
Found at i:71964565 original size:22 final size:23
Alignment explanation
Indices: 71964513--71964565 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
71964503 CTCATTGAGC
* *
71964513 TTAACAGGTAGCTCCGAAAGTTA
1 TTAACAGGGAGCTCCGAAAGTCA
71964536 TTAACAGGGAGCTCCGAATAG-CA
1 TTAACAGGGAGCTCCGAA-AGTCA
71964559 -TAACAGG
1 TTAACAGG
71964566 AAGTTCAAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 7 0.26
23 18 0.67
24 2 0.07
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (23 bp):
TTAACAGGGAGCTCCGAAAGTCA
Found at i:71964613 original size:24 final size:24
Alignment explanation
Indices: 71964576--71964627 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
71964566 AAGTTCAAGC
71964576 GAGCCATGTCAGGAAGCTCAT-AA
1 GAGCCATGTCAGGAAGCTCATGAA
* *
71964599 GAGCCTATGTTAGGATGCTCATGAA
1 GAGCC-ATGTCAGGAAGCTCATGAA
71964624 GAGC
1 GAGC
71964628 TGCGTTTGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.20
24 14 0.56
25 6 0.24
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (24 bp):
GAGCCATGTCAGGAAGCTCATGAA
Found at i:71967967 original size:38 final size:39
Alignment explanation
Indices: 71967862--71967979 Score: 161
Period size: 39 Copynumber: 3.1 Consensus size: 39
71967852 TTATATTACC
* *
71967862 AGCACAAAGCCTGCAGGACTTTAGCCCAGATACATTTCCT
1 AGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT-CT
* * *
71967902 -GCACGAAGCCTACGGGACTTTAGCCCGGATAAATTTCT
1 AGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTTCT
71967940 AGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTT-T
1 AGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTTCT
71967977 AGC
1 AGC
71967980 CCGGATACAT
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
37 4 0.06
38 23 0.33
39 43 0.61
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
AGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTTCT
Found at i:71967979 original size:16 final size:16
Alignment explanation
Indices: 71967958--71967991 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
71967948 GCCTGCGGAC
71967958 TTTAGCCCGGATACAT
1 TTTAGCCCGGATACAT
71967974 TTTAGCCCGGATACAT
1 TTTAGCCCGGATACAT
71967990 TT
1 TT
71967992 CCAGCACGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (16 bp):
TTTAGCCCGGATACAT
Found at i:71967984 original size:54 final size:55
Alignment explanation
Indices: 71967920--71968030 Score: 197
Period size: 54 Copynumber: 2.0 Consensus size: 55
71967910 CCTACGGGAC
*
71967920 TTTAGCCCGGATAAATTTCTAGCACGAAGCCTGCG-GACTTTAGCCCGGATACAT
1 TTTAGCCCGGATAAATTTCCAGCACGAAGCCTGCGAGACTTTAGCCCGGATACAT
*
71967974 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGAGACTTTAGCCCGGATACAT
1 TTTAGCCCGGATAAATTTCCAGCACGAAGCCTGCGAGACTTTAGCCCGGATACAT
71968029 TT
1 TT
71968031 CCAGTATCTT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
54 33 0.61
55 21 0.39
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (55 bp):
TTTAGCCCGGATAAATTTCCAGCACGAAGCCTGCGAGACTTTAGCCCGGATACAT
Found at i:71969029 original size:34 final size:34
Alignment explanation
Indices: 71968964--71969041 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 34
71968954 CAAATAAATG
* *
71968964 TATATATATATTCACCTTCGGTGATATCAAACCA
1 TATATATATATTCACCTTCGATGATACCAAACCA
* * * * *
71968998 TATATATGTATTCACTTTTGATTATACCAAACTA
1 TATATATATATTCACCTTCGATGATACCAAACCA
*
71969032 TACATATATA
1 TATATATATA
71969042 ATTATGTACT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.37, C:0.17, G:0.06, T:0.40
Consensus pattern (34 bp):
TATATATATATTCACCTTCGATGATACCAAACCA
Found at i:71969797 original size:20 final size:19
Alignment explanation
Indices: 71969767--71969808 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
71969757 AGGCAAGTGG
* *
71969767 TTTTATTTTATTCCTTTTA
1 TTTTATTTTATTACTTTCA
71969786 TTTTATTTTTATTACTTTCA
1 TTTTA-TTTTATTACTTTCA
71969806 TTT
1 TTT
71969809 CATATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTATTTTATTACTTTCA
Found at i:71976207 original size:29 final size:29
Alignment explanation
Indices: 71976165--71976398 Score: 345
Period size: 29 Copynumber: 8.3 Consensus size: 29
71976155 GTGTACAATT
* *
71976165 TGAAAAGGGATAGCTTCGACTATCAAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
*
71976194 TGAAAAGGGATAGCTTTGGCTATCGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
71976223 TGAAAAGGGATAGCTTCGGCTATCGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
* * *
71976252 TAAAAAAGGACAGCTTCGGCTATCGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
*
71976281 TGAAAAAGGATAGCTTCGGCTATCGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
*
71976310 TGAAAAGGGATA------GCTATCGAATT
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
*
71976333 TGAAAAGGGATAGCTTCGGCTATAGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
71976362 TGAAAAGGGATAGCTTCGGCTATCGAATG
1 TGAAAAGGGATAGCTTCGGCTATCGAATG
71976391 TGAAAAGG
1 TGAAAAGG
71976399 AAAGGTATAC
Statistics
Matches: 185, Mismatches: 14, Indels: 12
0.88 0.07 0.06
Matches are distributed among these distances:
23 22 0.12
29 163 0.88
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (29 bp):
TGAAAAGGGATAGCTTCGGCTATCGAATG
Found at i:71976329 original size:23 final size:23
Alignment explanation
Indices: 71976299--71976347 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
71976289 GATAGCTTCG
71976299 GCTATCGAATGTGAAAAGGGATA
1 GCTATCGAATGTGAAAAGGGATA
*
71976322 GCTATCGAATTTGAAAAGGGATA
1 GCTATCGAATGTGAAAAGGGATA
71976345 GCT
1 GCT
71976348 TCGGCTATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.24
Consensus pattern (23 bp):
GCTATCGAATGTGAAAAGGGATA
Found at i:71976373 original size:81 final size:82
Alignment explanation
Indices: 71976161--71976398 Score: 336
Period size: 81 Copynumber: 2.9 Consensus size: 82
71976151 TTGTGTGTAC
* *
71976161 AATTTGAAAAGGGATAGCTTCGACTATCA-AATGTGAAAAGGGATAGCTTTGGCTATCGAATGTG
1 AATTTGAAAAGGGATAGCTTCGGCTAT-AGAATGTGAAAAGGGATAGCTTCGGCTATCGAATGTG
71976225 AAAAGGGATAGCTTCGGCTATCG
65 AAAAGGGATA----C-GCTATCG
* * * * * *
71976248 AATGTAAAAAAGGACAGCTTCGGCTATCGAATGTGAAAAAGGATAGCTTCGGCTATCGAATGTGA
1 AATTTGAAAAGGGATAGCTTCGGCTATAGAATGTGAAAAGGGATAGCTTCGGCTATCGAATGTGA
71976313 AAAGGGATA-GCTATCG
66 AAAGGGATACGCTATCG
71976329 AATTTGAAAAGGGATAGCTTCGGCTATAGAATGTGAAAAGGGATAGCTTCGGCTATCGAATGTGA
1 AATTTGAAAAGGGATAGCTTCGGCTATAGAATGTGAAAAGGGATAGCTTCGGCTATCGAATGTGA
71976394 AAAGG
66 AAAGG
71976399 AAAGGTATAC
Statistics
Matches: 136, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
81 71 0.52
87 65 0.48
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.24
Consensus pattern (82 bp):
AATTTGAAAAGGGATAGCTTCGGCTATAGAATGTGAAAAGGGATAGCTTCGGCTATCGAATGTGA
AAAGGGATACGCTATCG
Found at i:71976377 original size:110 final size:111
Alignment explanation
Indices: 71976165--71976396 Score: 340
Period size: 110 Copynumber: 2.1 Consensus size: 111
71976155 GTGTACAATT
*
71976165 TGAAAAGGGATAGCTTCGACTATCAAATGTGAAAAGGGATAGCTTTGGCTATCGAATGTGAAAAG
1 TGAAAAAGGATAGCTTCGACTATCAAATGTGAAAAGGGATA----T-GCTATCGAATGTGAAAAG
*
71976230 GGATAGCTTCGGCTATCGAATGTAAAAAAGGACAGCTTCGGCTATCGAATG
61 GGATAGCTTCGGCTATAGAATGTAAAAAAGGACAGCTTCGGCTATCGAATG
* * *
71976281 TGAAAAAGGATAGCTTCGGCTATCGAATGTGAAAAGGGATA-GCTATCGAATTTGAAAAGGGATA
1 TGAAAAAGGATAGCTTCGACTATCAAATGTGAAAAGGGATATGCTATCGAATGTGAAAAGGGATA
* * *
71976345 GCTTCGGCTATAGAATGTGAAAAGGGATAGCTTCGGCTATCGAATG
66 GCTTCGGCTATAGAATGTAAAAAAGGACAGCTTCGGCTATCGAATG
71976391 TGAAAA
1 TGAAAA
71976397 GGAAAGGTAT
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
110 70 0.65
116 38 0.35
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.24
Consensus pattern (111 bp):
TGAAAAAGGATAGCTTCGACTATCAAATGTGAAAAGGGATATGCTATCGAATGTGAAAAGGGATA
GCTTCGGCTATAGAATGTAAAAAAGGACAGCTTCGGCTATCGAATG
Found at i:71976429 original size:33 final size:33
Alignment explanation
Indices: 71976391--71976554 Score: 213
Period size: 33 Copynumber: 5.0 Consensus size: 33
71976381 CTATCGAATG
71976391 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
* * *
71976424 AGAAAAGGAAATGTATACTTTGTGTATACCATT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
* * * *
71976457 TGAAAAGGATATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
* ** *
71976489 TGGAAAGGTTAGGTATACTTTGTGTATACCATT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
*
71976522 TGAAAAGGAAAGGTATACTTTGTGTGTACCACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
71976555 CGGAAAGAAA
Statistics
Matches: 111, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
32 26 0.23
33 85 0.77
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.34
Consensus pattern (33 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCACT
Found at i:71976513 original size:65 final size:66
Alignment explanation
Indices: 71976391--71976561 Score: 245
Period size: 65 Copynumber: 2.6 Consensus size: 66
71976381 CTATCGAATG
* * *
71976391 TGAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAATGTATACTTTGTGTATACCAT
1 TGAAAAGGAAAGGTATACTTTGTGTGTACCACTAGGAAAGGAAAGGTATACTTTGTGTATACCAT
71976456 T
66 T
* * * * **
71976457 TGAAAAGGATATGTACACTTTGTGTGTA-CACTTGGAAAGGTTAGGTATACTTTGTGTATACCAT
1 TGAAAAGGAAAGGTATACTTTGTGTGTACCACTAGGAAAGGAAAGGTATACTTTGTGTATACCAT
71976521 T
66 T
*
71976522 TGAAAAGGAAAGGTATACTTTGTGTGTACCACTCGGAAAG
1 TGAAAAGGAAAGGTATACTTTGTGTGTACCACTAGGAAAG
71976562 AAACATACAC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
65 57 0.63
66 34 0.37
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (66 bp):
TGAAAAGGAAAGGTATACTTTGTGTGTACCACTAGGAAAGGAAAGGTATACTTTGTGTATACCAT
T
Found at i:71976594 original size:98 final size:99
Alignment explanation
Indices: 71976392--71976596 Score: 236
Period size: 98 Copynumber: 2.1 Consensus size: 99
71976382 TATCGAATGT
* *
71976392 GAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAATGTATACTTTGTGTATACCATT
1 GAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGTGTATACCACT
* * ** * * * *
71976457 TGAAAAGGATATGTACACTTTGTGTGTACACTTG
66 CGAAAAGGAAACATACACCTCGAGTGTACACTGG
** * * *
71976491 G-AAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTGTACCACT
1 GAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGTGTATACCACT
*
71976555 CGGAAA-GAAACATACACCTCGAGTGTACAAC-GG
66 CGAAAAGGAAACATACACCTCGAGTGTAC-ACTGG
71976588 GAAAAGGAA
1 GAAAAGGAA
71976597 CTCAGAAATT
Statistics
Matches: 86, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
97 18 0.21
98 67 0.78
99 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (99 bp):
GAAAAGGAAAGGTATACTTTGTGTATACCACTAGAAAAGGAAAGGTATACTTTGTGTATACCACT
CGAAAAGGAAACATACACCTCGAGTGTACACTGG
Found at i:71983388 original size:24 final size:25
Alignment explanation
Indices: 71983356--71983416 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 25
71983346 AATTGTGAAT
* *
71983356 AAGTGTACATTTGGGATGTAAAA-A
1 AAGTATACAATTGGGATGTAAAACA
71983380 AAGTATACAATTGGGATGTAAAACA
1 AAGTATACAATTGGGATGTAAAACA
*
71983405 AAATATACAATT
1 AAGTATACAATT
71983417 TCGGAAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 21 0.64
25 12 0.36
ACGTcount: A:0.48, C:0.07, G:0.18, T:0.28
Consensus pattern (25 bp):
AAGTATACAATTGGGATGTAAAACA
Found at i:71985637 original size:28 final size:28
Alignment explanation
Indices: 71985618--71985672 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
71985608 TTTAGAATCT
*
71985618 AAAATAAAAAATCGAGAATTAATAATTG
1 AAAATAAAAAATCGAGAATTAAGAATTG
* *
71985646 AAAATAAAAAATTGAGAATTGAGAATT
1 AAAATAAAAAATCGAGAATTAAGAATT
71985673 AAGTTGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.25
Consensus pattern (28 bp):
AAAATAAAAAATCGAGAATTAAGAATTG
Found at i:71985660 original size:14 final size:14
Alignment explanation
Indices: 71985618--71985660 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
71985608 TTTAGAATCT
*
71985618 AAAATAAAAAATCG
1 AAAATAAAAAATTG
* * *
71985632 AGAATTAATAATTG
1 AAAATAAAAAATTG
71985646 AAAATAAAAAATTG
1 AAAATAAAAAATTG
71985660 A
1 A
71985661 GAATTGAGAA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.23
Consensus pattern (14 bp):
AAAATAAAAAATTG
Found at i:71991393 original size:46 final size:46
Alignment explanation
Indices: 71991326--71991420 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
71991316 CCAAAATTCG
71991326 CCAAAAAACCATTCACGTCTTATGACACTATTGGATATAGACAATA
1 CCAAAAAACCATTCACGTCTTATGACACTATTGGATATAGACAATA
71991372 CCAAAAAACCATTCACGTCTTATGACACTATTGGATATAGACAATA
1 CCAAAAAACCATTCACGTCTTATGACACTATTGGATATAGACAATA
71991418 CCA
1 CCA
71991421 TTCACGTCTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.41, C:0.23, G:0.11, T:0.25
Consensus pattern (46 bp):
CCAAAAAACCATTCACGTCTTATGACACTATTGGATATAGACAATA
Found at i:71993956 original size:11 final size:11
Alignment explanation
Indices: 71993942--71993993 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
71993932 TCTTTCAATA
71993942 TTCTCTCAAAT
1 TTCTCTCAAAT
71993953 TTCTCTCAAA-
1 TTCTCTCAAAT
71993963 -TCTCTCAAAT
1 TTCTCTCAAAT
*
71993973 TTCTCTTAAAT
1 TTCTCTCAAAT
*
71993984 TCCTCTCAAA
1 TTCTCTCAAA
71993994 AATCTCGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:71993968 original size:20 final size:21
Alignment explanation
Indices: 71993936--71993993 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 21
71993926 CTTCAATCTT
71993936 TCAATATTCTCTCAAATTTCTC
1 TCAA-ATTCTCTCAAATTTCTC
71993958 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTTCTC
*
71993978 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
71993994 AATCTCGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 19 0.58
21 2 0.06
22 12 0.36
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTTCTC
Found at i:71994049 original size:16 final size:15
Alignment explanation
Indices: 71994020--71994050 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
71994010 TCAAAAAATC
*
71994020 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
71994035 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
71994050 T
1 T
71994051 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:71995723 original size:30 final size:30
Alignment explanation
Indices: 71995678--71995736 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
71995668 GCAGGCTCAT
71995678 CAACAGCACCCACACAATCACCCGGCCCAG
1 CAACAGCACCCACACAATCACCCGGCCCAG
* * * *
71995708 CAACAGGACCTACACAGTCACCGGGCCCA
1 CAACAGCACCCACACAATCACCCGGCCCA
71995737 ACAGTTCAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.46, G:0.17, T:0.05
Consensus pattern (30 bp):
CAACAGCACCCACACAATCACCCGGCCCAG
Found at i:71996421 original size:54 final size:54
Alignment explanation
Indices: 71996248--71996548 Score: 200
Period size: 54 Copynumber: 5.3 Consensus size: 54
71996238 TAAAAGGTTG
* * *
71996248 TTTTAAATAAAGTAATTGTAATTTACTTTTATATTTTTAATAAAATGGAAATTA
1 TTTTAAATAAAGTAATTATAATTTATTTTTATATTTTTAATAAAATGAAAATTA
* * * * *
71996302 TTTTAAATAATGCAAAATTTTGAA--TATTTTTATATTATTTCATGAATTAGAT-AAAAGGTTG
1 TTTTAAATAAAG--TAATTAT-AATTTATTTTTATATT-TTTAAT-AA--A-ATGAAAA--TTA
* * *
71996363 TTTTAAATAAAGTAATTGTAATTTATTTTTACATTTTTAATAAAATGGAAATTA
1 TTTTAAATAAAGTAATTATAATTTATTTTTATATTTTTAATAAAATGAAAATTA
* * * * *
71996417 TTTTAAATAAGGCAACATTTTGAA--TATTTTTATATTATTTCATGTGATAATAT-AAAAGGTTG
1 TTTTAAATAAAG-TA-ATTAT-AATTTATTTTTATATT-TTT-A----ATAAAATGAAAA--TTA
* *
71996479 TTTTAAATAAAGTGATTATAATTTACTTTTATATTTTTAATAAAATGAAAATTA
1 TTTTAAATAAAGTAATTATAATTTATTTTTATATTTTTAATAAAATGAAAATTA
*
71996533 TTTTAAATAAAATAAT
1 TTTTAAATAAAGTAAT
71996549 ATTTTGAATA
Statistics
Matches: 190, Mismatches: 30, Indels: 54
0.69 0.11 0.20
Matches are distributed among these distances:
54 40 0.21
55 31 0.16
56 25 0.13
57 7 0.04
58 4 0.02
59 17 0.09
60 23 0.12
61 30 0.16
62 13 0.07
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.47
Consensus pattern (54 bp):
TTTTAAATAAAGTAATTATAATTTATTTTTATATTTTTAATAAAATGAAAATTA
Found at i:71996535 original size:116 final size:116
Alignment explanation
Indices: 71996199--71996582 Score: 608
Period size: 116 Copynumber: 3.3 Consensus size: 116
71996189 TATTTGTACA
* * *
71996199 AACATTTTGAATCTTTTTATATTATTTCATGAAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
71996264 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAATGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAAGC
* *
71996315 AAAATTTTGAATATTTTTATATTATTTCATG-AATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
* * *
71996379 TGTAATTTATTTTTACATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAAGC
* * *
71996430 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTGAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
* * **
71996495 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAAT
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAAGC
*
71996546 AATATTTTGAATATTTTTATATTATTTCATGTAATAA
1 AACATTTTGAATATTTTTATATTATTTCATGTAATAA
71996583 AATATAAATA
Statistics
Matches: 248, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
115 111 0.45
116 137 0.55
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATAAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAAGC
Found at i:71996585 original size:61 final size:61
Alignment explanation
Indices: 71996400--71996585 Score: 176
Period size: 61 Copynumber: 3.1 Consensus size: 61
71996390 TTTACATTTT
* * *
71996400 TAATAAAATGGAAATTATTTTAAATAAGGCAACATTTTGAATATTTTTATATTATTTCATG
1 TAATAAAATGAAAATTATTTTAAATAAAGTAACATTTTGAATATTTTTATATTATTTCATG
* * * * *
71996461 TGATAATAT-AAAAGGTTGTTTTAAATAAAGT--GATTAT-AAT-TTACTTT-TA-TATTT--T-
1 TAATAAAATGAAAA--TTATTTTAAATAAAGTAACATTTTGAATATT--TTTATATTATTTCATG
* *
71996516 TAATAAAATGAAAATTATTTTAAATAAAATAATATTTTGAATATTTTTATATTATTTCATG
1 TAATAAAATGAAAATTATTTTAAATAAAGTAACATTTTGAATATTTTTATATTATTTCATG
71996577 TAATAAAAT
1 TAATAAAAT
71996586 ATAAATAATA
Statistics
Matches: 97, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 12 0.12
57 5 0.05
58 14 0.14
59 5 0.05
60 11 0.11
61 16 0.16
62 13 0.13
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (61 bp):
TAATAAAATGAAAATTATTTTAAATAAAGTAACATTTTGAATATTTTTATATTATTTCATG
Found at i:71999830 original size:126 final size:126
Alignment explanation
Indices: 71999609--71999892 Score: 462
Period size: 126 Copynumber: 2.3 Consensus size: 126
71999599 TTCAAAAACC
* * *
71999609 ACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCATGCT
*
71999674 TGAAGCGTTTTTACCACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
66 TGAAGCGTTTTTACCACTATTTACGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
* *
71999735 ACTGTAGCAAAAGAGCTTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCATGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCATGCT
* * *
71999800 TGAAGCGTTTTTGA-CACTATTTATGTAGACACGTCTTCTCAAATTTATTTTTTCAGAGACT
66 TGAAGCGTTTTT-ACCACTATTTACGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
*
71999861 ACTGTAGCAAAAGAGCGTCCACGTAGAAGCTT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTT
71999893 TTTTAGATTA
Statistics
Matches: 146, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
126 145 0.99
127 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (126 bp):
ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCATGCT
TGAAGCGTTTTTACCACTATTTACGCAGACACGTCTTCTCAAAATTATTTTTTCAGAGACT
Found at i:71999989 original size:15 final size:15
Alignment explanation
Indices: 71999969--71999998 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71999959 TTTCTTAAAT
71999969 ACCCTAAAACCCTAA
1 ACCCTAAAACCCTAA
*
71999984 ACCCTAAAATCCTAA
1 ACCCTAAAACCCTAA
71999999 TCTAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (15 bp):
ACCCTAAAACCCTAA
Done.