Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81554553
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2322942 characters in sequence are not A, C, G, or T
File 221 of 253
Found at i:72459774 original size:27 final size:26
Alignment explanation
Indices: 72459708--72459804 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 26
72459698 AGAACAGATA
* * *
72459708 ATGTGACAGAGTCACCAGATACAAAT
1 ATGTGGCAGAGCCACCAGATAGAAAT
72459734 AATCGTGGCAGAGCCACCAGAATAGAAAT
1 -AT-GTGGCAGAGCCACCAG-ATAGAAAT
72459763 ATGTGGCAGAGCCACCAGATCAGATAAT
1 ATGTGGCAGAGCCACCAGAT-AGA-AAT
*
72459791 -TGTGGCATAGCCAC
1 ATGTGGCAGAGCCAC
72459805 TAGGACGCTT
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.03
27 34 0.55
28 19 0.31
29 7 0.11
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
ATGTGGCAGAGCCACCAGATAGAAAT
Found at i:72459796 original size:54 final size:54
Alignment explanation
Indices: 72459695--72459804 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
72459685 CAGCATGGCT
* *
72459695 ACCAGAACAGATAATGTGACAGAGTCACCAGATACAAATAATCGTGGCAGAGCC
1 ACCAGAACAGAAAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCC
* * * * *
72459749 ACCAGAATAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCC
1 ACCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCC
72459803 AC
1 AC
72459805 TAGGACGCTT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 30 0.62
55 18 0.38
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
ACCAGAACAGAAAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCC
Found at i:72461074 original size:22 final size:22
Alignment explanation
Indices: 72461047--72461089 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
72461037 ACAGAAGAAG
* *
72461047 AAAAGAATAACAAATGGAGAGA
1 AAAAGAAAAACAAAAGGAGAGA
*
72461069 AAAAGAAAAATAAAAGGAGAG
1 AAAAGAAAAACAAAAGGAGAG
72461090 GAAGAGTGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.23, T:0.07
Consensus pattern (22 bp):
AAAAGAAAAACAAAAGGAGAGA
Found at i:72478903 original size:20 final size:21
Alignment explanation
Indices: 72478856--72478901 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
72478846 AGTTGGTGAG
*
72478856 AAAAAA-TAAATATATATTAT
1 AAAAAATTAAATATAAATTAT
*
72478876 AAAAAATTAAATATAAATTTT
1 AAAAAATTAAATATAAATTAT
72478897 AAAAA
1 AAAAA
72478902 TTTTAAGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAAATTAAATATAAATTAT
Found at i:72481076 original size:17 final size:17
Alignment explanation
Indices: 72481023--72481086 Score: 85
Period size: 17 Copynumber: 3.6 Consensus size: 17
72481013 AATCAAATCT
72481023 TCTAAGATTGCATATCATA
1 TCTAAGATTG--TATCATA
72481042 TCTAAGATT-TCAATCATA
1 TCTAAGATTGT--ATCATA
72481060 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
72481077 TCTAAGATTG
1 TCTAAGATTG
72481087 CATATCATTG
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
16 1 0.02
17 16 0.38
18 15 0.36
19 10 0.24
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:72481079 original size:35 final size:37
Alignment explanation
Indices: 72481023--72481094 Score: 112
Period size: 35 Copynumber: 2.0 Consensus size: 37
72481013 AATCAAATCT
*
72481023 TCTAAGATTGCATATCATATCTAAGATTTCA-ATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCATATCATA
72481060 TCTAAGATTG-TATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGATATCATATCTAAGATTGCATATCAT
72481095 TGAAGATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 18 0.55
36 5 0.15
37 10 0.30
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
TCTAAGATTGATATCATATCTAAGATTGCATATCATA
Found at i:72481092 original size:14 final size:15
Alignment explanation
Indices: 72481055--72481092 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
72481045 AAGATTTCAA
72481055 TCATATCTAAGATTG
1 TCATATCTAAGATTG
72481070 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
72481087 -CATATC
1 TCATATC
72481093 ATTGAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:72481252 original size:21 final size:21
Alignment explanation
Indices: 72481213--72481253 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72481203 TTGGACTTCG
* **
72481213 TTTTTTTTTTTGGGTTTATTA
1 TTTTTGTTTTTGGACTTATTA
72481234 TTTTTGTTTTTGGACTTATT
1 TTTTTGTTTTTGGACTTATT
72481254 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.02, G:0.15, T:0.73
Consensus pattern (21 bp):
TTTTTGTTTTTGGACTTATTA
Found at i:72481534 original size:44 final size:45
Alignment explanation
Indices: 72481449--72481584 Score: 148
Period size: 45 Copynumber: 3.0 Consensus size: 45
72481439 AGGCGATATT
* * * * *
72481449 TGCTATCTTCGATCTACTCCCCATCTAATACAGAGACGCCAAATC
1 TGCTATCTCCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
** *
72481494 TGCT-TCTTTAATCTGCTCCCCGTCTAATACAAAGATGCCAAATC
1 TGCTATCTCCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
* * * * *
72481538 TGTTATCTCCGATTTGCTCCCCGGCTAATATAGAGATGCCAAATC
1 TGCTATCTCCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
72481583 TG
1 TG
72481585 TCATCTTGGA
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
44 37 0.49
45 39 0.51
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.30
Consensus pattern (45 bp):
TGCTATCTCCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
Found at i:72481759 original size:78 final size:78
Alignment explanation
Indices: 72481614--72481907 Score: 457
Period size: 78 Copynumber: 3.8 Consensus size: 78
72481604 ATGTAAACAC
* *
72481614 ATGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCC-CGTCTAATACAGAGATGCCAAATCATTT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
72481678 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
72481691 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATC
72481755 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
72481769 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
72481834 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * **
72481847 ATGAAGGTCAGATTTGCTATGTCTTCGATCTGCTCTTCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATC
72481908 TGTTTCTTCG
Statistics
Matches: 197, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
77 33 0.17
78 164 0.83
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:72487767 original size:30 final size:30
Alignment explanation
Indices: 72487720--72487779 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72487710 TTCCCGAGCC
72487720 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* * *
72487750 TAGGGGTAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGT-GTAATTATGCAAAAGTT
72487780 CGTATTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:72488324 original size:46 final size:47
Alignment explanation
Indices: 72488202--72488330 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
72488192 GGTTGAACAT
* * * *
72488202 CCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACGC
* *
72488249 CTGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCG-AACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACGC
* * *
72488295 CCGAGCTCTTTGAGTTGAGTCCAAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72488331 GCAGGTTACA
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 34 0.48
47 37 0.52
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAACGC
Found at i:72493640 original size:17 final size:19
Alignment explanation
Indices: 72493625--72493696 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
72493615 AATCATATCT
72493625 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
72493644 TCTAAGATTACA-ATCATA
1 TCTAAGATTGCATATCATA
72493662 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
72493679 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
72493697 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 16 0.33
18 15 0.31
19 17 0.35
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:72493661 original size:18 final size:17
Alignment explanation
Indices: 72493625--72493687 Score: 81
Period size: 17 Copynumber: 3.5 Consensus size: 17
72493615 AATCATATCT
72493625 TCTAAGATTGCATATCATA
1 TCTAAGATT-CA-ATCATA
72493644 TCTAAGATTACAATCATA
1 TCTAAGATT-CAATCATA
**
72493662 TCTAAGATTGTATCATA
1 TCTAAGATTCAATCATA
72493679 TCTAAGATT
1 TCTAAGATT
72493688 GCATATCATT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
17 15 0.37
18 15 0.37
19 11 0.27
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (17 bp):
TCTAAGATTCAATCATA
Found at i:72493681 original size:35 final size:37
Alignment explanation
Indices: 72493618--72493696 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 37
72493608 ATTATAAAAT
72493618 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTA
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTA
*
72493654 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTA
72493689 CATATCAT
1 CATATCAT
72493697 TGAAGATTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 21 0.54
36 8 0.21
37 10 0.26
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTA
Found at i:72493694 original size:14 final size:15
Alignment explanation
Indices: 72493657--72493694 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
72493647 AAGATTACAA
72493657 TCATATCTAAGATTG
1 TCATATCTAAGATTG
72493672 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
72493689 -CATATC
1 TCATATC
72493695 ATTGAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.29
17 15 0.71
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:72494540 original size:16 final size:16
Alignment explanation
Indices: 72494502--72494543 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
72494492 AGTGTATTAT
72494502 TATT-ATTATTAATTTA
1 TATTAATTA-TAATTTA
*
72494518 T-TAAATTATAATTTA
1 TATTAATTATAATTTA
72494533 TATTAATTATA
1 TATTAATTATA
72494544 TTATGAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTAATTATAATTTA
Found at i:72495868 original size:23 final size:22
Alignment explanation
Indices: 72495841--72495902 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
72495831 TTTGCTGATC
72495841 GGCACTTTATGTGTCGTATTTCA
1 GGCAC-TTATGTGTCGTATTTCA
**
72495864 GGCACCTCGTGTGTCG--TTTCA
1 GGCA-CTTATGTGTCGTATTTCA
72495885 GGCACTTATGTGTCGTAT
1 GGCACTTATGTGTCGTAT
72495903 ACTGATCAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 9 0.28
21 9 0.28
22 1 0.03
23 12 0.38
24 1 0.03
ACGTcount: A:0.15, C:0.21, G:0.26, T:0.39
Consensus pattern (22 bp):
GGCACTTATGTGTCGTATTTCA
Found at i:72497659 original size:30 final size:30
Alignment explanation
Indices: 72497625--72497685 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
72497615 GCTCGAACCA
*
72497625 TCCCAATTTTTTATCGTCTTTTCTAAATTT
1 TCCCAATTTTTTATCATCTTTTCTAAATTT
72497655 TCCCAATTTTTTATCATCTTTTCTAAATTT
1 TCCCAATTTTTTATCATCTTTTCTAAATTT
72497685 T
1 T
72497686 TTGAACTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.21, C:0.20, G:0.02, T:0.57
Consensus pattern (30 bp):
TCCCAATTTTTTATCATCTTTTCTAAATTT
Found at i:72507652 original size:22 final size:22
Alignment explanation
Indices: 72507624--72507668 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
72507614 TCCAATGTCA
72507624 TTCCCCATATGAAATTACTAGC
1 TTCCCCATATGAAATTACTAGC
72507646 TTCCCCATATGAAATTACTAGC
1 TTCCCCATATGAAATTACTAGC
72507668 T
1 T
72507669 AACTTTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (22 bp):
TTCCCCATATGAAATTACTAGC
Found at i:72513359 original size:12 final size:13
Alignment explanation
Indices: 72513337--72513376 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
72513327 CTAAAGAACA
*
72513337 AGAAAAAAATCAG
1 AGAAAATAATCAG
72513350 -GAAAATAATC-G
1 AGAAAATAATCAG
72513361 AGAAAATAATCA-
1 AGAAAATAATCAG
72513373 AGAA
1 AGAA
72513377 GCGAAACAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
11 1 0.04
12 23 0.96
ACGTcount: A:0.65, C:0.07, G:0.15, T:0.12
Consensus pattern (13 bp):
AGAAAATAATCAG
Found at i:72515595 original size:24 final size:23
Alignment explanation
Indices: 72515568--72515618 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 23
72515558 ACAGATAGGC
72515568 AGAGA-TTTACACACTTACACACAT
1 AGAGATTTTACACAC--ACACACAT
72515592 AGAGATTTTTACACACACACACAT
1 AGAGA-TTTTACACACACACACAT
72515616 AGA
1 AGA
72515619 AAAACACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 16 0.64
26 9 0.36
ACGTcount: A:0.43, C:0.24, G:0.10, T:0.24
Consensus pattern (23 bp):
AGAGATTTTACACACACACACAT
Found at i:72516436 original size:12 final size:13
Alignment explanation
Indices: 72516421--72516518 Score: 64
Period size: 12 Copynumber: 7.8 Consensus size: 13
72516411 TATTTTTATA
*
72516421 ATTAT-TTATTTT
1 ATTATATTATATT
*
72516433 ATTATCTTATATT
1 ATTATATTATATT
*
72516446 A-TATGTTAT-TT
1 ATTATATTATATT
*
72516457 ATTGTA-TATATT
1 ATTATATTATATT
72516469 ATTATATATATATT
1 ATTATAT-TATATT
* *
72516483 ATTATCCTTA-ACT
1 ATTAT-ATTATATT
*
72516496 ATTATATTTTATT
1 ATTATATTATATT
72516509 AATTA-ATTAT
1 -ATTATATTAT
72516519 TCATATACTA
Statistics
Matches: 67, Mismatches: 11, Indels: 15
0.72 0.12 0.16
Matches are distributed among these distances:
11 6 0.09
12 23 0.34
13 20 0.30
14 17 0.25
15 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (13 bp):
ATTATATTATATT
Found at i:72516480 original size:16 final size:15
Alignment explanation
Indices: 72516439--72516487 Score: 57
Period size: 14 Copynumber: 3.3 Consensus size: 15
72516429 TTTTATTATC
*
72516439 TTATATTATATGTTA
1 TTATATTATATATTA
72516454 TT-TATTGTATATATTA
1 TTATA-T-TATATATTA
72516470 TTATA-TATATATTA
1 TTATATTATATATTA
72516484 TTAT
1 TTAT
72516488 CCTTAACTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 15 0.50
15 3 0.10
16 10 0.33
17 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (15 bp):
TTATATTATATATTA
Found at i:72516631 original size:15 final size:16
Alignment explanation
Indices: 72516563--72516755 Score: 55
Period size: 16 Copynumber: 11.8 Consensus size: 16
72516553 TATATACTTC
*
72516563 TATATTATATATTATA
1 TATATTATTTATTATA
* *
72516579 TAATGATTTTATTTACTATG
1 T-AT-A--TTATTTATTATA
* *
72516599 TAAATTATTTATTTTA
1 TATATTATTTATTATA
72516615 TATATTA-TTATTATA
1 TATATTATTTATTATA
*
72516630 TAT-TTGAAATTATTAT-
1 TATATT--ATTTATTATA
* *
72516646 TAAAATATTATATTATA
1 TATATTATT-TATTATA
*
72516663 TGTTCATTATATTATTA-A
1 T-AT-ATTAT-TTATTATA
*
72516681 T-TACTTATTTTTTTATTA
1 TATA-TTA-TTTATTA-TA
* *
72516699 TGTATTATTT-TT-TC
1 TATATTATTTATTATA
*
72516713 TAAATTATTT-TT-TA
1 TATATTATTTATTATA
*
72516727 -AAATTATGTTATTATA
1 TATATTAT-TTATTATA
*
72516743 TATATTAATTATT
1 TATATTATTTATT
72516756 TTGTATTTTT
Statistics
Matches: 133, Mismatches: 22, Indels: 44
0.67 0.11 0.22
Matches are distributed among these distances:
13 7 0.05
14 16 0.12
15 15 0.11
16 43 0.32
17 20 0.15
18 9 0.07
19 12 0.09
20 11 0.08
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (16 bp):
TATATTATTTATTATA
Found at i:72516870 original size:29 final size:32
Alignment explanation
Indices: 72516827--72516901 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 32
72516817 TTTAGAATTG
* *
72516827 ATATATTTATATATTATTATTAT-TCT-TA-T
1 ATATATTAATGTATTATTATTATCTCTGTAGT
72516856 ATATATTAATGTATTATTATTATCTCTGTATGT
1 ATATATTAATGTATTATTATTATCTCTGTA-GT
72516889 ATATATTAA-GTAT
1 ATATATTAATGTAT
72516902 CATGCATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
29 21 0.52
30 3 0.08
31 2 0.05
32 4 0.10
33 10 0.25
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.56
Consensus pattern (32 bp):
ATATATTAATGTATTATTATTATCTCTGTAGT
Found at i:72527980 original size:289 final size:288
Alignment explanation
Indices: 72527343--72527894 Score: 822
Period size: 289 Copynumber: 1.9 Consensus size: 288
72527333 AAGCAAGATC
* * * * *
72527343 CAAGATGGTTTGGAATCCTTGTGCTTACAAGGAACAAATC-AAAGACATAGCTGATTTGGCTTTC
1 CAAGATGATTTGGCATCCTTGTGC-TACAAAGAACAAATCGAAA-CCATAGCAGATTTGGCTTTC
* *
72527407 ACGTGTTTACGTTGAAGTAAGTCTAAAATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAA
64 ACGTGTTTACGTTGAAGCAAGTCTAAAATGATTTGGCATCTCTATATTGTCAGAGAACAAATCAA
*
72527472 AGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTATG
129 AGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTATA
* * * ** *
72527537 CTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCAAGGACATAGCAG
194 CTAAAGTAGATCCAAGATGATTTGGCATCCTTATACTTACAAGGAACAAATCAAGAACATAGCAG
* * *
72527602 ATTTGACTATCAGATGTTCTCAAACAGATC
259 ATTTGACTATCAGATGTGCTCAAACAAATA
* *
72527632 CAAGATGATTTGGTATCCTTGTGCTTACAAAGAACAAATCGAAACCATAGCTGATTTGGCTTTCA
1 CAAGATGATTTGGCATCCTTGTGC-TACAAAGAACAAATCGAAACCATAGCAGATTTGGCTTTCA
* *
72527697 CGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAA
65 CGTGTTTACGTTGAAGCAAGTCTAAAATGATTTGGCATCTCTATATTGTCAGAGAACAAATCAAA
* * *
72527762 GTTTGGCGTCTCCATATTCGACGGAGGGCAGGCACATAGCAGATCTAACCTTTAGATGTTTATAC
130 GTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTATAC
*
72527827 TAAAGTAGATCCAAGATGA-TTGGCATCCTTATACTTACAAGGAACAAATCGAA-AACATAGCTG
195 TAAAGTAGATCCAAGATGATTTGGCATCCTTATACTTACAAGGAACAAATC-AAGAACATAGCAG
72527890 ATTTG
259 ATTTG
72527895 GCTTTCGTGT
Statistics
Matches: 242, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
288 40 0.17
289 199 0.82
290 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (288 bp):
CAAGATGATTTGGCATCCTTGTGCTACAAAGAACAAATCGAAACCATAGCAGATTTGGCTTTCAC
GTGTTTACGTTGAAGCAAGTCTAAAATGATTTGGCATCTCTATATTGTCAGAGAACAAATCAAAG
TTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACT
AAAGTAGATCCAAGATGATTTGGCATCCTTATACTTACAAGGAACAAATCAAGAACATAGCAGAT
TTGACTATCAGATGTGCTCAAACAAATA
Found at i:72528392 original size:9 final size:9
Alignment explanation
Indices: 72528378--72528403 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
72528368 AGGACTAAAG
72528378 TGGCCCAAC
1 TGGCCCAAC
72528387 TGGCCCAAC
1 TGGCCCAAC
72528396 TGGCCCAA
1 TGGCCCAA
72528404 ATTATTACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.42, G:0.23, T:0.12
Consensus pattern (9 bp):
TGGCCCAAC
Found at i:72528551 original size:21 final size:21
Alignment explanation
Indices: 72528516--72528556 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
72528506 TCGAGATGAC
*
72528516 CATCAATGCTCTGTCTCAGGT
1 CATCAATGCTCTGTCACAGGT
72528537 CATCAATGCAT-TGTCACAGG
1 CATCAATGC-TCTGTCACAGG
72528557 CCCTTCAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (21 bp):
CATCAATGCTCTGTCACAGGT
Found at i:72528904 original size:24 final size:22
Alignment explanation
Indices: 72528877--72528929 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 22
72528867 ACACAGATAG
72528877 ACAGAGATTTACACACTTACACAC
1 ACAGAGATTTACACAC--ACACAC
**
72528901 ACAGAGATTTTTACACACACAC
1 ACAGAGATTTACACACACACAC
72528923 ACAGAGA
1 ACAGAGA
72528930 AAAACACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 13 0.48
24 14 0.52
ACGTcount: A:0.43, C:0.26, G:0.11, T:0.19
Consensus pattern (22 bp):
ACAGAGATTTACACACACACAC
Found at i:72528923 original size:22 final size:22
Alignment explanation
Indices: 72528862--72528929 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
72528852 GGAACTGACG
* * *
72528862 TTTTTACACAGATAGACAGAGA
1 TTTTTACACACACACACAGAGA
**
72528884 TTTACACACTTACACACACAGAGA
1 TTTTTACAC--ACACACACAGAGA
72528908 TTTTTACACACACACACAGAGA
1 TTTTTACACACACACACAGAGA
72528930 AAAACACCAG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
22 20 0.54
24 17 0.46
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.24
Consensus pattern (22 bp):
TTTTTACACACACACACAGAGA
Found at i:72529803 original size:16 final size:15
Alignment explanation
Indices: 72529762--72529810 Score: 57
Period size: 14 Copynumber: 3.3 Consensus size: 15
72529752 TTTTATTATC
*
72529762 TTATATTATATGTTA
1 TTATATTATATATTA
72529777 TT-TATTGTATATATTA
1 TTATA-T-TATATATTA
72529793 TTATA-TATATATTA
1 TTATATTATATATTA
72529807 TTAT
1 TTAT
72529811 CCTTAACTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 15 0.50
15 3 0.10
16 10 0.33
17 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (15 bp):
TTATATTATATATTA
Found at i:72529954 original size:15 final size:16
Alignment explanation
Indices: 72529886--72530072 Score: 57
Period size: 16 Copynumber: 11.4 Consensus size: 16
72529876 TATATACTTC
*
72529886 TATATTATATATTATA
1 TATATTATTTATTATA
* *
72529902 TAATGATTTTATTTACTATG
1 T-AT-A--TTATTTATTATA
* *
72529922 TAAATTATTTATTTTA
1 TATATTATTTATTATA
72529938 TATATTA-TTATTATA
1 TATATTATTTATTATA
* *
72529953 TATTTTGAAATTATTAT-
1 TATATT--ATTTATTATA
* *
72529970 TAAAATATTATATTATA
1 TATATTATT-TATTATA
*
72529987 TGTTCATTATATTATTA-A
1 T-AT-ATTAT-TTATTATA
* *
72530005 T-TACTTATTTTTTTTA
1 TATA-TTATTTATTATA
* *
72530021 TGTATTATTT-TT-TC
1 TATATTATTTATTATA
* *
72530035 TAAATTATTT-TTTTA
1 TATATTATTTATTATA
*
72530050 -AAATTATGTTATTATA
1 TATATTAT-TTATTATA
72530066 TATATTA
1 TATATTA
72530073 ATTCTTTTGT
Statistics
Matches: 127, Mismatches: 25, Indels: 37
0.67 0.13 0.20
Matches are distributed among these distances:
14 18 0.14
15 24 0.19
16 39 0.31
17 14 0.11
18 11 0.09
19 10 0.08
20 11 0.09
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.59
Consensus pattern (16 bp):
TATATTATTTATTATA
Found at i:72530053 original size:14 final size:14
Alignment explanation
Indices: 72530024--72530056 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
72530014 TTTTTTATGT
72530024 ATTATTTTTTCTAA
1 ATTATTTTTTCTAA
72530038 ATTATTTTTT-TAAA
1 ATTATTTTTTCT-AA
72530052 ATTAT
1 ATTAT
72530057 GTTATTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 1 0.06
14 17 0.94
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (14 bp):
ATTATTTTTTCTAA
Found at i:72530192 original size:29 final size:32
Alignment explanation
Indices: 72530149--72530223 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 32
72530139 TTTAGAATTG
* *
72530149 ATATATTTATATATTATTATTAT-TCT-TA-T
1 ATATATTAATGTATTATTATTATCTCTGTAGT
72530178 ATATATTAATGTATTATTATTATCTCTGTATGT
1 ATATATTAATGTATTATTATTATCTCTGTA-GT
72530211 ATATATTAA-GTAT
1 ATATATTAATGTAT
72530224 CATGCATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
29 21 0.52
30 3 0.08
31 2 0.05
32 4 0.10
33 10 0.25
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.56
Consensus pattern (32 bp):
ATATATTAATGTATTATTATTATCTCTGTAGT
Found at i:72532574 original size:19 final size:20
Alignment explanation
Indices: 72532541--72532580 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
72532531 ATATGTATAT
72532541 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAAGAAAATGAAA
72532560 ATAAAATAACA-AAAATGAAA
1 ATAAAATAA-AGAAAATGAAA
72532580 A
1 A
72532581 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
ATAAAATAAAGAAAATGAAA
Found at i:72532861 original size:18 final size:19
Alignment explanation
Indices: 72532821--72532863 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
72532811 AGAGGTTAGG
72532821 TTTTTTTC-TTTTTCTTCA
1 TTTTTTTCTTTTTTCTTCA
* *
72532839 TTTTTTTCTTTTTTTTTTA
1 TTTTTTTCTTTTTTCTTCA
72532858 TTTTTT
1 TTTTTT
72532864 ATTTTGGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.05, C:0.09, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTTTCTTTTTTCTTCA
Found at i:72534342 original size:34 final size:33
Alignment explanation
Indices: 72534296--72534359 Score: 110
Period size: 34 Copynumber: 1.9 Consensus size: 33
72534286 GTTGGCATAT
72534296 ATATCTCAAAAGATATTGTATGATGCTGGTTTC
1 ATATCTCAAAAGATATTGTATGATGCTGGTTTC
*
72534329 ATATGTCATAAAGATATTGTATGATGCTGGT
1 ATATCTCA-AAAGATATTGTATGATGCTGGT
72534360 CTTCGTTCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 7 0.24
34 22 0.76
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (33 bp):
ATATCTCAAAAGATATTGTATGATGCTGGTTTC
Found at i:72538576 original size:13 final size:13
Alignment explanation
Indices: 72538560--72538590 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
72538550 ATTATTATGC
72538560 TATTTATTTATCT
1 TATTTATTTATCT
*
72538573 TATTTATTTATTT
1 TATTTATTTATCT
72538586 TATTT
1 TATTT
72538591 GACTTGGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (13 bp):
TATTTATTTATCT
Found at i:72539910 original size:18 final size:18
Alignment explanation
Indices: 72539884--72539918 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72539874 TAAATATTTT
*
72539884 TTTAAATCTATTAAATAC
1 TTTAAATCTATAAAATAC
*
72539902 TTTATATCTATAAAATA
1 TTTAAATCTATAAAATA
72539919 TTAATTATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTAAATCTATAAAATAC
Found at i:72539979 original size:17 final size:17
Alignment explanation
Indices: 72539923--72539980 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
72539913 AAAATATTAA
72539923 TTATAAATTGTATATTAT
1 TTATAAATTGTAT-TTAT
* * * *
72539941 TTATTATATTATTTTTAC
1 TTA-TAAATTGTATTTAT
72539959 TTATAAATTGTATTTAT
1 TTATAAATTGTATTTAT
72539976 TTATA
1 TTATA
72539981 TATTTTATAT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
17 15 0.48
18 9 0.29
19 7 0.23
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.60
Consensus pattern (17 bp):
TTATAAATTGTATTTAT
Found at i:72540140 original size:21 final size:19
Alignment explanation
Indices: 72540103--72540153 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 19
72540093 CATTACATTT
*
72540103 TATTA-TATATAT-TTTTA
1 TATTATTATATATGGTTTA
72540120 TATTACTTATTATATGGTTTA
1 TATTA-TTA-TATATGGTTTA
72540141 TATTATTATATAT
1 TATTATTATATAT
72540154 TTTGGTTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
17 5 0.17
19 7 0.24
20 8 0.28
21 9 0.31
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (19 bp):
TATTATTATATATGGTTTA
Found at i:72545379 original size:33 final size:33
Alignment explanation
Indices: 72545337--72545403 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
72545327 ATATAGGTGA
72545337 TTGTGGATCGCCTTACAAATAGTTCACACTTTT
1 TTGTGGATCGCCTTACAAATAGTTCACACTTTT
72545370 TTGTGGATCGCCTTACAAATAGTTCACACTTTT
1 TTGTGGATCGCCTTACAAATAGTTCACACTTTT
72545403 T
1 T
72545404 AGTAGTTCGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (33 bp):
TTGTGGATCGCCTTACAAATAGTTCACACTTTT
Found at i:72549526 original size:46 final size:45
Alignment explanation
Indices: 72549471--72549562 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 45
72549461 TTTGGATAAT
*
72549471 GATTAAGACAGATCTCAAAGATTGAAAGT-AATTTAGAATATTAGA
1 GATTAAGACACATCTCAAAGATTGAAAGTAAATTT-GAATATTAGA
72549516 GATTAAAGACACATCTCAAAGATTGAAAGTAAATTTGAATATTAGA
1 GATT-AAGACACATCTCAAAGATTGAAAGTAAATTTGAATATTAGA
72549562 G
1 G
72549563 TTTACTTTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
45 4 0.09
46 35 0.80
47 5 0.11
ACGTcount: A:0.47, C:0.08, G:0.17, T:0.28
Consensus pattern (45 bp):
GATTAAGACACATCTCAAAGATTGAAAGTAAATTTGAATATTAGA
Found at i:72550449 original size:19 final size:20
Alignment explanation
Indices: 72550405--72550449 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
72550395 TGTCCCTTGT
*
72550405 TATATATATATTAGAACTTG
1 TATATATATATTAGAACTTC
72550425 TA-ATATATATTA-AGA-TTC
1 TATATATATATTAGA-ACTTC
72550443 TATATAT
1 TATATAT
72550450 TTAGGGTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 5 0.23
19 15 0.68
20 2 0.09
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (20 bp):
TATATATATATTAGAACTTC
Found at i:72550798 original size:21 final size:20
Alignment explanation
Indices: 72550740--72550798 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
72550730 TGTGAATGGT
*
72550740 TTTAGGGTTTAAAGTTTGGG
1 TTTAGGGTTTAAGGTTTGGG
* *
72550760 GTTATGGGTTT-TGTGTTTGTGG
1 TTTA-GGGTTTAAG-GTTTG-GG
72550782 TTTAGGGTTTAAGGTTT
1 TTTAGGGTTTAAGGTTT
72550799 AGAGTATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
20 3 0.10
21 21 0.70
22 6 0.20
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.51
Consensus pattern (20 bp):
TTTAGGGTTTAAGGTTTGGG
Found at i:72550846 original size:15 final size:15
Alignment explanation
Indices: 72550826--72550857 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
72550816 TTTAATTTAA
72550826 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
72550841 AAGATAAATATATAT
1 AAGATAAATATAAAT
72550856 AA
1 AA
72550858 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:72550875 original size:18 final size:18
Alignment explanation
Indices: 72550852--72550912 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
72550842 AGATAAATAT
72550852 ATATAAATTATTATTTTA
1 ATATAAATTATTATTTTA
** **
72550870 ATATAAA-TAAGATCAATA
1 ATATAAATTATTAT-TTTA
72550888 TATATAAATTATTATTTTA
1 -ATATAAATTATTATTTTA
72550907 ATATAA
1 ATATAA
72550913 TATATATCAA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 4 0.12
18 15 0.47
19 9 0.28
20 4 0.12
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (18 bp):
ATATAAATTATTATTTTA
Found at i:72550922 original size:37 final size:37
Alignment explanation
Indices: 72550832--72550912 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
72550822 TTAAAAGATA
*
72550832 AATATAAATAAGATAAATATATATAAATTATTATTTT
1 AATATAAATAAGATCAATATATATAAATTATTATTTT
72550869 AATATAAATAAGATCAATATATATAAATTATTATTTT
1 AATATAAATAAGATCAATATATATAAATTATTATTTT
72550906 AATATAA
1 AATATAA
72550913 TATATATCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.42
Consensus pattern (37 bp):
AATATAAATAAGATCAATATATATAAATTATTATTTT
Found at i:72553321 original size:39 final size:39
Alignment explanation
Indices: 72553278--72553352 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
72553268 AGGTAGAAAA
* * *
72553278 CTTAAATTTGTTATTTTGCATGGTTATTTGATATCTACT
1 CTTAAATTTGTTATTCTGCATGATTATTTGAGATCTACT
72553317 CTTAAATTTGTTATTCTGCATGATTATTTGAGATCT
1 CTTAAATTTGTTATTCTGCATGATTATTTGAGATCT
72553353 GCTTCTGTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.52
Consensus pattern (39 bp):
CTTAAATTTGTTATTCTGCATGATTATTTGAGATCTACT
Found at i:72554710 original size:106 final size:106
Alignment explanation
Indices: 72554442--72554880 Score: 703
Period size: 106 Copynumber: 4.2 Consensus size: 106
72554432 ATTTTAAAAT
* *
72554442 TTTTATTTT-ATTTTTAAATTACCGAATTAAATTAAAATGTATTTAAAGTTTTATTTTGAATATT
1 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAAATGTATTTAAAGTTTTATTTTAAATATT
* *
72554506 TTATTTTATTTTAATTTAATCAC-AGAAAATATTTTGTCTAC
66 TTACTTGATTTTAATTTAATCACTA-AAAATATTTTGTCTAC
* *
72554547 TTTTA--TT--TTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAAATGTATTTAAAGTTTTATTTTAAATATT
72554608 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
66 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
*
72554649 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAAATGTATTTAAAGTTTTATTTTAAATATT
*
72554714 TTA-TTGGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
66 TTACTT-GATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* * *
72554755 TTTTATTTTATTTTTTAAATTACCTAACTAAATTAAAATGTCTTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAAATGTATTTAAAGTTTTATTTTAAATATT
72554820 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
66 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
*
72554861 TTTTATTTTATTTTTTAAAT
1 TTTTATTTTAATTTTTAAAT
72554881 ATTTTATTTT
Statistics
Matches: 314, Mismatches: 13, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
102 92 0.29
103 3 0.01
104 2 0.01
105 7 0.02
106 208 0.66
107 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.54
Consensus pattern (106 bp):
TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAAATGTATTTAAAGTTTTATTTTAAATATT
TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
Found at i:72554933 original size:19 final size:18
Alignment explanation
Indices: 72554911--72554951 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
72554901 TAAAATAATT
72554911 AATTAACCCTAAACTTGTA
1 AATTAA-CCTAAACTTGTA
*
72554930 AATTTAATCTAAACTTGTA
1 AA-TTAACCTAAACTTGTA
72554949 AAT
1 AAT
72554952 AATTAATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 15 0.75
20 4 0.20
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (18 bp):
AATTAACCTAAACTTGTA
Found at i:72554997 original size:9 final size:9
Alignment explanation
Indices: 72554983--72555262 Score: 100
Period size: 9 Copynumber: 30.7 Consensus size: 9
72554973 TCCCATCAAC
72554983 AACTTACAT
1 AACTTACAT
*
72554992 AACTTATAT
1 AACTTACAT
72555001 AA--TACAT
1 AACTTACAT
*
72555008 AAATATATATCAT
1 -AA-CT-TA-CAT
*
72555021 ATCTTACAT
1 AACTTACAT
*
72555030 AATTTACAT
1 AACTTACAT
** * *
72555039 AAGATAAAC
1 AACTTACAT
72555048 AACTTACAT
1 AACTTACAT
*
72555057 AATTTACAT
1 AACTTACAT
72555066 AACTTACAT
1 AACTTACAT
72555075 AA--TACAT
1 AACTTACAT
* *
72555082 AAGTATATATT
1 AACT-TACA-T
*
72555093 ATATCGTACAT
1 A-A-CTTACAT
*
72555104 AATTTACAT
1 AACTTACAT
72555113 AA-TT-CGGAT
1 AACTTAC--AT
*
72555122 AGCTTACAT
1 AACTTACAT
*
72555131 AATTTACAT
1 AACTTACAT
72555140 AACTTACAT
1 AACTTACAT
72555149 AA--TACAT
1 AACTTACAT
*
72555156 AAATATATATCAT
1 -AA-CT-TA-CAT
* *
72555169 ATCGTACAT
1 AACTTACAT
*
72555178 AATTTACAT
1 AACTTACAT
72555187 AA-TT-CGGAT
1 AACTTAC--AT
72555196 AACTTACAT
1 AACTTACAT
*
72555205 AATTTACAT
1 AACTTACAT
72555214 AACTTACAT
1 AACTTACAT
72555223 AA--TACAT
1 AACTTACAT
* *
72555230 AA-ATATAT
1 AACTTACAT
* *
72555238 ATCATATCAT
1 AACTTA-CAT
72555248 AACTTACAT
1 AACTTACAT
72555257 AACTTA
1 AACTTA
72555263 ATTATACTTA
Statistics
Matches: 203, Mismatches: 39, Indels: 58
0.68 0.13 0.19
Matches are distributed among these distances:
7 25 0.12
8 13 0.06
9 124 0.61
10 18 0.09
11 7 0.03
12 10 0.05
13 6 0.03
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (9 bp):
AACTTACAT
Found at i:72555069 original size:18 final size:18
Alignment explanation
Indices: 72555024--72555225 Score: 124
Period size: 18 Copynumber: 11.0 Consensus size: 18
72555014 ATATCATATC
* *
72555024 TTACATAATTTACATAAG
1 TTACATAACTTACATAAT
* * *
72555042 ATAAACAACTTACATAAT
1 TTACATAACTTACATAAT
72555060 TTACATAACTTACATAA-
1 TTACATAACTTACATAAT
* *
72555077 -TACATAAGTATATATTATAT
1 TTACATAACT-TACA-TA-AT
* *
72555097 CGTACATAATTTACATAAT
1 -TTACATAACTTACATAAT
*** *
72555116 TCGGATAGCTTACATAAT
1 TTACATAACTTACATAAT
72555134 TTACATAACTTACATAA-
1 TTACATAACTTACATAAT
* *
72555151 -TACATAAATATATATCATAT
1 TTACATAACT-TACAT-A-AT
* *
72555171 CGTACATAATTTACATAAT
1 -TTACATAACTTACATAAT
***
72555190 TCGGATAACTTACATAAT
1 TTACATAACTTACATAAT
72555208 TTACATAACTTACATAAT
1 TTACATAACTTACATAAT
72555226 ACATAAATAT
Statistics
Matches: 138, Mismatches: 34, Indels: 24
0.70 0.17 0.12
Matches are distributed among these distances:
16 16 0.12
17 7 0.05
18 83 0.60
19 6 0.04
20 3 0.02
21 7 0.05
22 16 0.12
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.37
Consensus pattern (18 bp):
TTACATAACTTACATAAT
Found at i:72555077 original size:74 final size:74
Alignment explanation
Indices: 72554986--72555245 Score: 423
Period size: 74 Copynumber: 3.5 Consensus size: 74
72554976 CATCAACAAC
* * * ** *
72554986 TTACATAACTTATATAATACATAAATATATATCATATCTTACATAATTTACATAAGAT-AAACAA
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAA-TTCGGATAA
72555050 CTTACATAAT
65 CTTACATAAT
* * *
72555060 TTACATAACTTACATAATACATAAGTATATATTATATCGTACATAATTTACATAATTCGGATAGC
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
72555125 TTACATAAT
66 TTACATAAT
72555134 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
72555199 TTACATAAT
66 TTACATAAT
72555208 TTACATAACTTACATAATACATAAATATATATCATATC
1 TTACATAACTTACATAATACATAAATATATATCATATC
72555246 ATAACTTACA
Statistics
Matches: 173, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
73 1 0.01
74 172 0.99
ACGTcount: A:0.45, C:0.14, G:0.03, T:0.37
Consensus pattern (74 bp):
TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
TTACATAAT
Found at i:72560321 original size:13 final size:14
Alignment explanation
Indices: 72560305--72560333 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72560295 TTATAAATAT
72560305 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
72560318 TTATAATGGTTTAA
1 TTATAATGGTTTAA
72560332 TT
1 TT
72560334 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:72560793 original size:21 final size:21
Alignment explanation
Indices: 72560743--72560797 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
72560733 ACTTAGAGCG
* *
72560743 GAGGCAGCAGAGAGGGAGGCA
1 GAGGCAGCAGCGAGAGAGGCA
* * *
72560764 GCGGTAGCAGCGAGAGAGGCT
1 GAGGCAGCAGCGAGAGAGGCA
72560785 GAGGCAGCAGCGA
1 GAGGCAGCAGCGA
72560798 TGGCAGTAGA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.18, G:0.49, T:0.04
Consensus pattern (21 bp):
GAGGCAGCAGCGAGAGAGGCA
Found at i:72562711 original size:6 final size:6
Alignment explanation
Indices: 72562700--72562733 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
72562690 CTAAATTAAT
72562700 AAAATA AAAATA AAAATA AAAATA AATAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AA-AATA AAA
72562734 CAAAATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:72562738 original size:18 final size:18
Alignment explanation
Indices: 72562700--72562738 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
72562690 CTAAATTAAT
*
72562700 AAAATAAAAATAAAAATA
1 AAAATAAAAATAAAAACA
72562718 AAAATAAATAAT-AAAACA
1 AAAATAAA-AATAAAAACA
72562736 AAA
1 AAA
72562739 TAATATCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (18 bp):
AAAATAAAAATAAAAACA
Found at i:72562739 original size:13 final size:13
Alignment explanation
Indices: 72562702--72562743 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
72562692 AAATTAATAA
72562702 AATAAAAATAAA-
1 AATAAAAATAAAT
72562714 AATAAAAATAAAT
1 AATAAAAATAAAT
72562727 AATAAAACA-AAAT
1 AATAAAA-ATAAAT
72562740 AATA
1 AATA
72562744 TCTTCTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.43
13 15 0.54
14 1 0.04
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (13 bp):
AATAAAAATAAAT
Found at i:72565216 original size:127 final size:127
Alignment explanation
Indices: 72565057--72565310 Score: 400
Period size: 127 Copynumber: 2.0 Consensus size: 127
72565047 TCCTCCAACC
* * * *
72565057 TATGAAACTCAAAGGCTAAGTACATGATTAATAATTACATTAATAACCAAATACATGCATCTAAT
1 TATGAAACTCAAAGACTAAGCACATGATTAATAATTACATTAATAACCAAATAAATACATCTAAT
* *
72565122 CTTACATACATAATTTCAAAATTCATACTTAATTAATTAAATACATGTAATTAATGTTCATT
66 CTTACATACATAATTTCAAAATTCATACTTAATTAATTAAATACATGCAATTAATATTCATT
* * * *
72565184 TATGTAACTGAAAGACTAAGCACATGATTAATAATTACATTAATGACCAAATAAATACATTTAAT
1 TATGAAACTCAAAGACTAAGCACATGATTAATAATTACATTAATAACCAAATAAATACATCTAAT
* *
72565249 CTTGCATGCATAATTTCAAAATTCATACTTAATTAATTAAATACATGCAATTAATATTCATT
66 CTTACATACATAATTTCAAAATTCATACTTAATTAATTAAATACATGCAATTAATATTCATT
72565311 CATGCACTAA
Statistics
Matches: 115, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
127 115 1.00
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (127 bp):
TATGAAACTCAAAGACTAAGCACATGATTAATAATTACATTAATAACCAAATAAATACATCTAAT
CTTACATACATAATTTCAAAATTCATACTTAATTAATTAAATACATGCAATTAATATTCATT
Found at i:72566424 original size:10 final size:10
Alignment explanation
Indices: 72566369--72566432 Score: 51
Period size: 10 Copynumber: 6.1 Consensus size: 10
72566359 AAATATATTT
72566369 ATAATTTCTT-
1 ATAATTT-TTA
72566379 ATAATTTTTA
1 ATAATTTTTA
*
72566389 ATCATTTTTA
1 ATAATTTTTA
*
72566399 GATAGCTTTTCT-
1 -ATA-ATTTT-TA
72566411 ATAATTTTTA
1 ATAATTTTTA
72566421 ATAATTATTTA
1 ATAATT-TTTA
72566432 A
1 A
72566433 AAAACTACTT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
9 3 0.07
10 26 0.59
11 10 0.23
12 4 0.09
13 1 0.02
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:72569128 original size:7 final size:7
Alignment explanation
Indices: 72569116--72569144 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
72569106 AACATCTATT
72569116 AGCTAAA
1 AGCTAAA
72569123 AGCTAAA
1 AGCTAAA
72569130 AGCTAAA
1 AGCTAAA
72569137 AGCTAAA
1 AGCTAAA
72569144 A
1 A
72569145 TTAATATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (7 bp):
AGCTAAA
Found at i:72569209 original size:34 final size:33
Alignment explanation
Indices: 72569166--72569232 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 33
72569156 TGTAGAGAGA
72569166 AATGGAACCATAAACACTAGTACTAAAATTTAAG
1 AATGGAACCATAAACACTAGTACT-AAATTTAAG
72569200 AATGGAACCATAAACACTAGTACTAAATTTAAG
1 AATGGAACCATAAACACTAGTACTAAATTTAAG
72569233 TATCCCACCA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 9 0.27
34 24 0.73
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (33 bp):
AATGGAACCATAAACACTAGTACTAAATTTAAG
Found at i:72569243 original size:33 final size:34
Alignment explanation
Indices: 72569171--72569243 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 34
72569161 AGAGAAATGG
**
72569171 AACCATAAACACTAGTACTAAAATTTAAGAATGG
1 AACCATAAACACTAGTACTAAAATTTAAGAATCC
*
72569205 AACCATAAACACTAGTACT-AAATTTAAGTATCC
1 AACCATAAACACTAGTACTAAAATTTAAGAATCC
*
72569238 CACCAT
1 AACCAT
72569244 TGAATTAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
33 16 0.46
34 19 0.54
ACGTcount: A:0.47, C:0.21, G:0.08, T:0.25
Consensus pattern (34 bp):
AACCATAAACACTAGTACTAAAATTTAAGAATCC
Found at i:72571126 original size:2 final size:2
Alignment explanation
Indices: 72571114--72571145 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
72571104 AATCAACAAA
72571114 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT A
72571146 GCAATCCAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:72574213 original size:22 final size:22
Alignment explanation
Indices: 72574185--72574233 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
72574175 AGCGCATCTT
72574185 GACTAACCATGAAGTCACTCTC
1 GACTAACCATGAAGTCACTCTC
72574207 GACTAACCATGAAGTCACTCTC
1 GACTAACCATGAAGTCACTCTC
72574229 GACTA
1 GACTA
72574234 GGCTATCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.33, C:0.31, G:0.14, T:0.22
Consensus pattern (22 bp):
GACTAACCATGAAGTCACTCTC
Found at i:72579290 original size:49 final size:49
Alignment explanation
Indices: 72579218--72579317 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
72579208 GAAAATCTCA
72579218 AAAATTAAGGCATGACCACTCTCTCTCGATTCACAAACTCAATTCTACT
1 AAAATTAAGGCATGACCACTCTCTCTCGATTCACAAACTCAATTCTACT
72579267 AAAATTAAGGCATGACCACTCTCTCTCGATTCACAAACTCAATTCTACT
1 AAAATTAAGGCATGACCACTCTCTCTCGATTCACAAACTCAATTCTACT
72579316 AA
1 AA
72579318 CCCTCGATTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (49 bp):
AAAATTAAGGCATGACCACTCTCTCTCGATTCACAAACTCAATTCTACT
Found at i:72587847 original size:31 final size:31
Alignment explanation
Indices: 72587809--72587869 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
72587799 AAAGATCTCT
72587809 CAAATATGGATGTTTTTTATGAAGAATCATA
1 CAAATATGGATGTTTTTTATGAAGAATCATA
72587840 CAAATATGGATGTTTTTTATGAAGAATCAT
1 CAAATATGGATGTTTTTTATGAAGAATCAT
72587870 TTGCTGAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (31 bp):
CAAATATGGATGTTTTTTATGAAGAATCATA
Found at i:72588158 original size:22 final size:22
Alignment explanation
Indices: 72588130--72588175 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
72588120 TCACATTCAT
72588130 TATTTAGGAATTAGAAAGTATA
1 TATTTAGGAATTAGAAAGTATA
72588152 TATTTAGGAATTAGAAAGTATA
1 TATTTAGGAATTAGAAAGTATA
72588174 TA
1 TA
72588176 GAAATGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (22 bp):
TATTTAGGAATTAGAAAGTATA
Found at i:72591649 original size:16 final size:16
Alignment explanation
Indices: 72591624--72591666 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
72591614 TTATATTCTA
*
72591624 TTTATTTTTAATTTTC
1 TTTATGTTTAATTTTC
72591640 TTTATGTTT-ATTTTC
1 TTTATGTTTAATTTTC
72591655 TATTATTGTTTA
1 T-TTA-TGTTTA
72591667 TATATATTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 7 0.30
16 11 0.48
17 5 0.22
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.72
Consensus pattern (16 bp):
TTTATGTTTAATTTTC
Found at i:72607208 original size:44 final size:44
Alignment explanation
Indices: 72607129--72607215 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
72607119 AGCCACCAGC
* ** *
72607129 CTTATTTCTCTGAGGTAGCAAAGGAGTAGGTTGAAGGTTGTAGT
1 CTTATTTCTCTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGT
* *
72607173 CTTATCTTCT-TGAGGTAGTAAGGGAGCAGACTGAAGATTGTAG
1 CTTAT-TTCTCTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAG
72607216 ATTTTGTCTC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
44 32 0.89
45 4 0.11
ACGTcount: A:0.26, C:0.10, G:0.31, T:0.32
Consensus pattern (44 bp):
CTTATTTCTCTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGT
Found at i:72607350 original size:178 final size:178
Alignment explanation
Indices: 72607081--72607514 Score: 586
Period size: 178 Copynumber: 2.4 Consensus size: 178
72607071 CAAAGACAAT
* * * * * * *
72607081 GAATTTTATCTTCCCGAGGTAGTAGGAGAGCAGATTTTAGCCACCAGCCTTATTTCTCTGAGGTA
1 GAATCTTATCTACTCGAAGTAGTAGGAGAGCAGATTTTAGTCATCAGCCTTATCTCTCTGAGGTA
* * * * * * *
72607146 GCAAAGGAGTAGGTTGAAGGTTGTAGTCTTATCTTCTTGAGGTAGTAAGGGAGCAGACTGAAGAT
66 GCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGTAAAGGAGCAGACTAAAGAT
* *
72607211 TGTAGATTTTGTCTCCTCGAGATATCAGTAGGGCAGATCGAAAGTGGC
131 TGTAGATTTTGTCTCCTCGAGACAGCAGTAGGGCAGATCGAAAGTGGC
* *
72607259 GACTCTTATCTTA-TCGAAGTAGTAGGAGAGCCGATTTTAGTCATCAGCCTTATCTCTCTGAGGT
1 GAATCTTATC-TACTCGAAGTAGTAGGAGAGCAGATTTTAGTCATCAGCCTTATCTCTCTGAGGT
72607323 AGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGTAAAGGAGCAGACTAAAGA
65 AGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGTAAAGGAGCAGACTAAAGA
*
72607388 TTGTAGATTTTGTCTCCTCGAGACAGCAGTGGGGCAGATCGAAAGTGGC
130 TTGTAGATTTTGTCTCCTCGAGACAGCAGTAGGGCAGATCGAAAGTGGC
* * * * * *
72607437 GAATCTTATCTACTCGAGGTAGTAGGCA-AACAGATTTAATTCATCAACCTTATCTCTCTAAGGT
1 GAATCTTATCTACTCGAAGTAGTAGG-AGAGCAGATTTTAGTCATCAGCCTTATCTCTCTGAGGT
*
72607501 TGC-AGTGGAGCAGG
65 AGCAAG-GGAGCAGG
72607515 TTCAAATCAC
Statistics
Matches: 224, Mismatches: 28, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
177 4 0.02
178 218 0.97
179 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (178 bp):
GAATCTTATCTACTCGAAGTAGTAGGAGAGCAGATTTTAGTCATCAGCCTTATCTCTCTGAGGTA
GCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGTAAAGGAGCAGACTAAAGAT
TGTAGATTTTGTCTCCTCGAGACAGCAGTAGGGCAGATCGAAAGTGGC
Found at i:72607355 original size:44 final size:44
Alignment explanation
Indices: 72607307--72607393 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
72607297 AGTCATCAGC
* * *
72607307 CTTATC-TCTCTGAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAAGGAGCAGACTAAAGATTGTAGT
*
72607351 CTTATCTTCCTGAGGTAGTAAAGGAGCAGACTAAAGATTGTAG
1 CTTATCTTCCTGAGGTAGCAAAGGAGCAGACTAAAGATTGTAG
72607394 ATTTTGTCTC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 36 0.95
45 2 0.05
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (44 bp):
CTTATCTTCCTGAGGTAGCAAAGGAGCAGACTAAAGATTGTAGT
Found at i:72609378 original size:28 final size:28
Alignment explanation
Indices: 72609308--72609368 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
72609298 GTTTTACTAG
72609308 TTATT-TAAAATAATTT-TATATACATCAT
1 TTATTCTAAAAT--TTTATATATACATCAT
* *
72609336 TTATTCTAAAATTTTATATATATATTAT
1 TTATTCTAAAATTTTATATATACATCAT
72609364 TTATT
1 TTATT
72609369 TTAGATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 3 0.10
28 20 0.69
29 6 0.21
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTATTCTAAAATTTTATATATACATCAT
Found at i:72612756 original size:22 final size:23
Alignment explanation
Indices: 72612731--72612826 Score: 83
Period size: 23 Copynumber: 4.2 Consensus size: 23
72612721 ACAAATACAT
* *
72612731 GAGCACATAAGTGCTAAA-TCAG
1 GAGCACAAAAGTGCTAAATTCAA
72612753 GAGCACAAAAGTGCTAAATTCAA
1 GAGCACAAAAGTGCTAAATTCAA
*
72612776 GAGCA-AGGAAA-TGCTAACTTCACA
1 GAGCACA--AAAGTGCTAAATTCA-A
* * *
72612800 -AGCACCAGAGTGCTAAATTCAC
1 GAGCACAAAAGTGCTAAATTCAA
72612822 GAGCA
1 GAGCA
72612827 TGCTATGGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
22 20 0.33
23 36 0.60
24 4 0.07
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.17
Consensus pattern (23 bp):
GAGCACAAAAGTGCTAAATTCAA
Found at i:72615342 original size:16 final size:16
Alignment explanation
Indices: 72615318--72615350 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
72615308 ATTACATGTC
72615318 AAATCTTAAGGCTTGA
1 AAATCTTAAGGCTTGA
*
72615334 AAATTTTAAGGCTTGA
1 AAATCTTAAGGCTTGA
72615350 A
1 A
72615351 TTAGGGAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.33
Consensus pattern (16 bp):
AAATCTTAAGGCTTGA
Found at i:72623004 original size:30 final size:32
Alignment explanation
Indices: 72622968--72623046 Score: 126
Period size: 32 Copynumber: 2.5 Consensus size: 32
72622958 TATATTTTCT
72622968 GTACTTGGCTAGGTTTTCTT-TTT-AAGAACA
1 GTACTTGGCTAGGTTTTCTTCTTTAAAGAACA
*
72622998 GTACTTGGCTAGGTTTTTTTCTTTAAAGAACA
1 GTACTTGGCTAGGTTTTCTTCTTTAAAGAACA
*
72623030 GTATTTGGCTAGGTTTT
1 GTACTTGGCTAGGTTTT
72623047 ATTAATCATA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 19 0.42
31 3 0.07
32 23 0.51
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.46
Consensus pattern (32 bp):
GTACTTGGCTAGGTTTTCTTCTTTAAAGAACA
Found at i:72624082 original size:22 final size:22
Alignment explanation
Indices: 72624033--72624083 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
72624023 TTAAGGTTAC
*
72624033 ATCATAGTGATTTTCTTTATAA
1 ATCATGGTGATTTTCTTTATAA
72624055 ATCATGGTGATTTTCTTTATAA
1 ATCATGGTGATTTTCTTTATAA
72624077 ATCATGG
1 ATCATGG
72624084 AATCTAAGCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (22 bp):
ATCATGGTGATTTTCTTTATAA
Found at i:72631018 original size:27 final size:27
Alignment explanation
Indices: 72630999--72631182 Score: 224
Period size: 27 Copynumber: 6.8 Consensus size: 27
72630989 ATTACCAAAG
* *
72630999 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
72631026 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
** * *
72631053 TACTATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
72631080 TACTCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
72631107 TATCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
72631134 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
72631161 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
72631183 TAAAATACCC
Statistics
Matches: 139, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:72631047 original size:54 final size:54
Alignment explanation
Indices: 72630999--72631182 Score: 251
Period size: 54 Copynumber: 3.4 Consensus size: 54
72630989 ATTACCAAAG
*
72630999 TACCCTCAATTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACCATTT
** * * * *
72631053 TACTATCGATTTATAGAATTACCGTTTTACTCTCGATTTATAGAATTACCATTT
1 TACCCTCAATTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACCATTT
* * * *
72631107 TATCCTCAATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACCATTT
* *
72631161 TACCCTCGATTTACAAAATTAC
1 TACCCTCAATTTACAGAATTAC
72631183 TAAAATACCC
Statistics
Matches: 110, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 110 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCAATTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACCATTT
Found at i:72631192 original size:54 final size:54
Alignment explanation
Indices: 72630999--72631210 Score: 244
Period size: 54 Copynumber: 3.9 Consensus size: 54
72630989 ATTACCAAAG
* * *
72630999 TACCCTCAATTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
** * * * * * *
72631053 TACTATCGATTTATAGAATTACCGTTTTACTCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
* *
72631107 TATCCTCAATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
* * *** * *
72631161 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACC
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACC
72631211 AAAATACCCC
Statistics
Matches: 132, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 132 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCGTTT
Found at i:72631201 original size:81 final size:81
Alignment explanation
Indices: 72630999--72631211 Score: 210
Period size: 81 Copynumber: 2.6 Consensus size: 81
72630989 ATTACCAAAG
* * **** * * *
72630999 TACCCTCAATTTACAGAATTACCGTTTTACCCTTGATTTATAGAATTACCGTTTTACTATCGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCATTTTACCATCGATT
*
72631064 TATAGAATTACCGTTT
66 TACAGAATTACCGTTT
* * * *** * ** * *
72631080 TACTCTCGATTTATAGAATTACCATTTTATCCTCAATTTACAGAATTACCATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCATTTTACCATCGATT
72631145 TACAGAATTACCGTTT
66 TACAGAATTACCGTTT
* * *
72631161 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCA
72631212 AAATACCCCT
Statistics
Matches: 107, Mismatches: 25, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCATTTTACCATCGATT
TACAGAATTACCGTTT
Found at i:72631219 original size:54 final size:55
Alignment explanation
Indices: 72631134--72631382 Score: 195
Period size: 54 Copynumber: 4.6 Consensus size: 55
72631124 ATTACCATTT
* * *** * *
72631134 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCGAAATACCCTCGACTTTGCAAAATTACCAAAA
* * * *
72631188 TACCCTTGGTTTACAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCGAAATACCCTCGACTTTGCAAAATTACCAAAA
*** * * *
72631242 TACCAC-TGGTTTGTGAAATTATCGAAATACCCTC-AATTTGTAAAATTACCAAAA
1 TACC-CTTGGTTTACAAAATTACCGAAATACCCTCGACTTTGCAAAATTACCAAAA
* * ** * *
72631296 TACCCCTGATTTACAAAATTATAGAAATACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGGTTTACAAAATTACCGAAATACCCTCGACTTTGC--AAAATTACCA-AAA
* *
72631352 TACCATTGGTTTACAAAATTACTGAAATACC
1 TACCCTTGGTTTACAAAATTACCGAAATACC
72631383 TTTGGTTTGT
Statistics
Matches: 157, Mismatches: 30, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
53 3 0.02
54 111 0.71
55 7 0.04
56 36 0.23
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (55 bp):
TACCCTTGGTTTACAAAATTACCGAAATACCCTCGACTTTGCAAAATTACCAAAA
Found at i:72631219 original size:81 final size:81
Alignment explanation
Indices: 72631060--72631316 Score: 178
Period size: 81 Copynumber: 3.2 Consensus size: 81
72631050 TTTTACTATC
* * * * *** * *
72631060 GATTTATAGAATTACCGTTTTACTCTCGATTTATAGAATTACCATTTTATCCTCAATTTACAGAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCAATTTACAAAA
***
72631125 TTACCATTTTACCCTT
66 TTACCAAAATACCCTT
* ***
72631141 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAA
1 GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCAATTTACAAAA
*
72631206 TTACCAAAATACCCCTA
66 TTACCAAAATA-CCCTT
* **** * *** * * **
72631223 GTTTGTA-A-AATTACCAAAATACCACT-GGTTTGTGAAATTATCGAAATACCCTCAATTTGTAA
1 GATT-TACAGAATTACCGTTTTACC-CTCGATTTACAAAATTACCAAAATACCCTCAATTTACAA
*
72631285 AATTACCAAAATACCCCT
64 AATTACCAAAATACCCTT
*
72631303 GATTTACAAAATTA
1 GATTTACAGAATTA
72631317 TAGAAATACC
Statistics
Matches: 134, Mismatches: 37, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
79 2 0.01
80 7 0.05
81 113 0.84
82 10 0.07
83 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.35
Consensus pattern (81 bp):
GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCAATTTACAAAA
TTACCAAAATACCCTT
Found at i:72631387 original size:27 final size:27
Alignment explanation
Indices: 72631161--72631390 Score: 146
Period size: 27 Copynumber: 8.4 Consensus size: 27
72631151 ATTACCGTTT
* *
72631161 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*
72631188 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
72631215 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*** *
72631242 TACCAC-TGGTTTGTGAAATTA-TCGAAA
1 TACC-CTTGGTTTACAAAATTACT-AAAA
*** ** *
72631269 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
72631296 TACCCCTGATTTACAAAATTA-TAGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
*
72631323 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACTA-AAA
* *
72631352 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*
72631379 TACCTTTGGTTT
1 TACCCTTGGTTT
72631391 GTAGATTTAC
Statistics
Matches: 164, Mismatches: 29, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
26 2 0.01
27 133 0.81
28 8 0.05
29 21 0.13
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:72631474 original size:27 final size:27
Alignment explanation
Indices: 72631431--72631504 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
72631421 AAATGACTAA
*
72631431 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
** *
72631458 AA-AGCCCCTGTAGGGTAAAGTGACTGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
*
72631485 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
72631505 TGATGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:72632350 original size:25 final size:24
Alignment explanation
Indices: 72632312--72632381 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
72632302 AGAAAGTACT
*
72632312 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
* *
72632336 GAAAAGGGATTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
72632361 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
72632382 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:72632394 original size:24 final size:24
Alignment explanation
Indices: 72632311--72632394 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
72632301 GAGAAAGTAC
* *
72632311 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* *
72632336 GAAAAGGGATTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
72632360 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
72632384 TAAAAGAGGCT
1 TAAAAG-GGCT
72632395 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.20
25 36 0.72
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:72632576 original size:42 final size:42
Alignment explanation
Indices: 72632529--72632620 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
72632519 TAGTCTCCCC
* *
72632529 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGACATTG
72632571 AAATGGGCTTGCATACATCCATTGACATTACATGTGACATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGACATTG
72632613 AAATGGGC
1 AAATGGGC
72632621 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGACATTG
Found at i:72632679 original size:31 final size:31
Alignment explanation
Indices: 72632644--72632758 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
72632634 CGTTTACAGT
72632644 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
72632675 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
72632706 AAATGCTTTGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
72632737 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
72632759 TCAAGACTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.06
31 74 0.94
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:72640558 original size:57 final size:57
Alignment explanation
Indices: 72640486--72640631 Score: 177
Period size: 57 Copynumber: 2.6 Consensus size: 57
72640476 AACTATCTAC
* *
72640486 GATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTATA-TCATCAAATCATCTTTT
1 GATGCCATAGCGTCTTTCAACTATGGTCTTACTCACTATACT-ATCAAATCATCTTTT
** * * *
72640543 GATGCCATAGCGTCTTTCAACTATGGTAGTACTCACTATACTGTCATATTATCTTTT
1 GATGCCATAGCGTCTTTCAACTATGGTCTTACTCACTATACTATCAAATCATCTTTT
* * * *
72640600 GATTCCATAGCATCTTTCAGCTATGATCTTAC
1 GATGCCATAGCGTCTTTCAACTATGGTCTTAC
72640632 ACAATATAAC
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
57 74 0.99
58 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.40
Consensus pattern (57 bp):
GATGCCATAGCGTCTTTCAACTATGGTCTTACTCACTATACTATCAAATCATCTTTT
Found at i:72642868 original size:18 final size:19
Alignment explanation
Indices: 72642831--72642868 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
72642821 ACTAATAGTA
*
72642831 TAATCATGATTAACTTAAT
1 TAATCATGATTAACTGAAT
72642850 TAATCATGA-TAACTGAAT
1 TAATCATGATTAACTGAAT
72642868 T
1 T
72642869 TGAAATACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (19 bp):
TAATCATGATTAACTGAAT
Found at i:72643828 original size:14 final size:14
Alignment explanation
Indices: 72643809--72643838 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72643799 TAGTTGACAT
*
72643809 GGTTGATCGCCTCC
1 GGTTGACCGCCTCC
72643823 GGTTGACCGCCTCC
1 GGTTGACCGCCTCC
72643837 GG
1 GG
72643839 ACATACCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.37, G:0.33, T:0.23
Consensus pattern (14 bp):
GGTTGACCGCCTCC
Found at i:72648716 original size:43 final size:43
Alignment explanation
Indices: 72648655--72648896 Score: 277
Period size: 43 Copynumber: 5.6 Consensus size: 43
72648645 TTATTTAAAA
* * *
72648655 AAACACCGCTAAAGACCATGACTTTTAGCGGCGCTTTTTTTAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTTAC
* * * *
72648698 AAACACTGCTAAAGACCATGACCTTTAGCGGCGTTTTTTTTAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTTAC
* * * *
72648741 AAACGCCGCTAAAGACTATGACCTTTAGCGGCACTTTTCCTGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTTAC
* * * * **
72648784 AAATGCCGCTAAGGACCATGGCCTTTAGCGGTGCTTTTCTCGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTTAC
* * *
72648827 AAACGCCGCTAAGGACCATGACCTTTAGCGGTGCTTTTCTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTTAC
* * *
72648870 AAACGCCGCTAAAAATCATGAACTTTA
1 AAACGCCGCTAAAGACCATGACCTTTA
72648897 AAAAAATTAT
Statistics
Matches: 173, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 173 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTTAC
Found at i:72648896 original size:129 final size:129
Alignment explanation
Indices: 72648660--72648896 Score: 314
Period size: 129 Copynumber: 1.8 Consensus size: 129
72648650 TAAAAAAACA
* * * *
72648660 CCGCTAAAGACCATGACTTTTAGCGGCGCTTTTTTTACAAACACTGCTAAAGACCATGACCTTTA
1 CCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACACCGCTAAAGACCATGACCTTTA
* * * * *
72648725 GCGGCGTTTTTTTTACAAACGCCGCTAAAGACTATGACCTTTAGCGGCACTTTTCCTGCAAATG
66 GCGGCGCTTTTCTCACAAACGCCGCTAAAAACTATGAACTTTAGCGGCACTTTTCCTGCAAATG
* * * * * *
72648789 CCGCTAAGGACCATGGCCTTTAGCGGTGCTTTTCTCGCAAACGCCGCTAAGGACCATGACCTTTA
1 CCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACACCGCTAAAGACCATGACCTTTA
*
72648854 GCGGTGCTTTTCTCACAAACGCCGCTAAAAA-TCATGAACTTTA
66 GCGGCGCTTTTCTCACAAACGCCGCTAAAAACT-ATGAACTTTA
72648897 AAAAAATTAT
Statistics
Matches: 91, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
128 1 0.01
129 90 0.99
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (129 bp):
CCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAACACCGCTAAAGACCATGACCTTTA
GCGGCGCTTTTCTCACAAACGCCGCTAAAAACTATGAACTTTAGCGGCACTTTTCCTGCAAATG
Found at i:72648945 original size:22 final size:23
Alignment explanation
Indices: 72648917--72648959 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
72648907 TTTATTTTAA
*
72648917 TTAAATAATAT-TTATTTTTATG
1 TTAAATAATATATTATGTTTATG
*
72648939 TTAAATATTATATTATGTTTA
1 TTAAATAATATATTATGTTTA
72648960 ATTTTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAAATAATATATTATGTTTATG
Found at i:72649967 original size:21 final size:21
Alignment explanation
Indices: 72649943--72649984 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
72649933 CTTTTGGAAG
72649943 TTAACCTTTAAACTTTCTGTA
1 TTAACCTTTAAACTTTCTGTA
72649964 TTAACCTTTAAACTTTCTGTA
1 TTAACCTTTAAACTTTCTGTA
72649985 GAGGATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.48
Consensus pattern (21 bp):
TTAACCTTTAAACTTTCTGTA
Found at i:72652048 original size:23 final size:23
Alignment explanation
Indices: 72652022--72652067 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
72652012 TTTTTAAATG
72652022 CCACCTAATC-CATTTTAACAGAT
1 CCACCTAATCTCA-TTTAACAGAT
*
72652045 CCACCTAATCTGATTTAACAGAT
1 CCACCTAATCTCATTTAACAGAT
72652068 GTTCTCTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (23 bp):
CCACCTAATCTCATTTAACAGAT
Found at i:72654204 original size:8 final size:7
Alignment explanation
Indices: 72654186--72654323 Score: 55
Period size: 7 Copynumber: 19.1 Consensus size: 7
72654176 ACTAATTAAT
72654186 CTAAACC
1 CTAAACC
72654193 CTAAATCC
1 CTAAA-CC
72654201 CT-AACC
1 CTAAACC
* *
72654207 TCTGACCC
1 -CTAAACC
72654215 CTAAACC
1 CTAAACC
* *
72654222 TTAAATC
1 CTAAACC
* *
72654229 ATAAAAC
1 CTAAACC
*
72654236 ATAAACC
1 CTAAACC
*
72654243 CTTAACCC
1 C-TAAACC
72654251 CTAAACC
1 CTAAACC
*
72654258 TTAAACC
1 CTAAACC
* *
72654265 CCAACCCC
1 CTAA-ACC
*
72654273 TCTAAAAC
1 -CTAAACC
*
72654281 TTAAACC
1 CTAAACC
72654288 CT-AACC
1 CTAAACC
**
72654294 CTTGACC
1 CTAAACC
72654301 CATAAACC
1 C-TAAACC
* *
72654309 ATAATCC
1 CTAAACC
72654316 CTAAACC
1 CTAAACC
72654323 C
1 C
72654324 ATAATCTATA
Statistics
Matches: 95, Mismatches: 28, Indels: 16
0.68 0.20 0.12
Matches are distributed among these distances:
6 8 0.08
7 64 0.67
8 20 0.21
9 3 0.03
ACGTcount: A:0.39, C:0.39, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:72654283 original size:23 final size:22
Alignment explanation
Indices: 72654230--72654294 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 22
72654220 CCTTAAATCA
*
72654230 TAAAACATAAACCCTTAA-CCCC
1 TAAAACTTAAACCC-TAACCCCC
* *
72654252 TAAACCTTAAACCCCAACCCCTC
1 TAAAACTTAAACCCTAACCCC-C
72654275 TAAAACTTAAACCCTAACCC
1 TAAAACTTAAACCCTAACCC
72654295 TTGACCCATA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 2 0.06
22 15 0.42
23 19 0.53
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.18
Consensus pattern (22 bp):
TAAAACTTAAACCCTAACCCCC
Found at i:72654819 original size:27 final size:27
Alignment explanation
Indices: 72654781--72654835 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
72654771 GCGTTTTCCC
72654781 AAAAGCGCCGCTAAAACCTAGATCTAT
1 AAAAGCGCCGCTAAAACCTAGATCTAT
*
72654808 AAAAGCGCCGCTAAAACCTCGATCTAT
1 AAAAGCGCCGCTAAAACCTAGATCTAT
72654835 A
1 A
72654836 GCGGCGTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.27, G:0.15, T:0.18
Consensus pattern (27 bp):
AAAAGCGCCGCTAAAACCTAGATCTAT
Found at i:72654865 original size:41 final size:41
Alignment explanation
Indices: 72654808--72654983 Score: 228
Period size: 41 Copynumber: 4.3 Consensus size: 41
72654798 CTAGATCTAT
*
72654808 AAAAGCGCCGCTAAAACCTCGATCTATAGCGGCGTTTTCCC
1 AAAAGCGCCGCTAAAACCTCGATCTATAGCGGCGTTTTTCC
* *
72654849 AAAAGCGCCGCTAAAACCTCGATCTATAGTGGCATTTTTCC
1 AAAAGCGCCGCTAAAACCTCGATCTATAGCGGCGTTTTTCC
* * * * * * *
72654890 AAAAGTGCTGCTAAAAACT-GAGCAATAGCAGCGTTTTTCA
1 AAAAGCGCCGCTAAAACCTCGATCTATAGCGGCGTTTTTCC
* * *
72654930 AAAAGCGCCGCTAAAAGCTCGACCTATAGCGGCGTTTTTAC
1 AAAAGCGCCGCTAAAACCTCGATCTATAGCGGCGTTTTTCC
72654971 AAAAGCGCCGCTA
1 AAAAGCGCCGCTA
72654984 TTGTTCAGTT
Statistics
Matches: 114, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
40 31 0.27
41 83 0.73
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (41 bp):
AAAAGCGCCGCTAAAACCTCGATCTATAGCGGCGTTTTTCC
Found at i:72655009 original size:40 final size:40
Alignment explanation
Indices: 72654956--72655085 Score: 154
Period size: 41 Copynumber: 3.2 Consensus size: 40
72654946 GCTCGACCTA
*
72654956 TAGCGGCGTTTTTACAAAAGCGCCGCTATTGTTCAGTTTT
1 TAGCGGCGTTTTTACAAAAGCGCCGCTATTGCTCAGTTTT
* * *
72654996 TAGCGGCGTTTTTACTAAAAACGCCACTATTACTCTA-TTTT
1 TAGCGGCGTTTTTAC-AAAAGCGCCGCTATTGCTC-AGTTTT
** *
72655037 TAGCGGCGTTTGGATCAAAAGCGTCGCTATTGCTCAGTTTT
1 TAGCGGCGTTTTTA-CAAAAGCGCCGCTATTGCTCAGTTTT
*
72655078 TTGCGGCG
1 TAGCGGCG
72655086 CTTTATTGCA
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
40 16 0.21
41 57 0.76
42 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (40 bp):
TAGCGGCGTTTTTACAAAAGCGCCGCTATTGCTCAGTTTT
Found at i:72657669 original size:12 final size:12
Alignment explanation
Indices: 72657652--72657682 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
72657642 GGTCAAACGC
72657652 CCGTGTGCTAGG
1 CCGTGTGCTAGG
72657664 CCGTGTGCTAGG
1 CCGTGTGCTAGG
72657676 CCGTGTG
1 CCGTGTG
72657683 GTAACTGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.26, G:0.42, T:0.26
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:72677506 original size:18 final size:18
Alignment explanation
Indices: 72677484--72677534 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
72677474 TAAATTTTGG
72677484 AAAAAAAAGAATAAA-T-A
1 AAAAAAAAGAA-AAATTGA
*
72677501 ACAAAAAAGGAAAAATTGA
1 A-AAAAAAAGAAAAATTGA
72677520 AAAAAAAAGAGAAAA
1 AAAAAAAAGA-AAAA
72677535 AGTTTTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 4 0.14
18 18 0.64
19 6 0.21
ACGTcount: A:0.78, C:0.02, G:0.12, T:0.08
Consensus pattern (18 bp):
AAAAAAAAGAAAAATTGA
Found at i:72678034 original size:15 final size:17
Alignment explanation
Indices: 72678000--72678036 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
72677990 TATATTTTTT
72678000 ATTTTATTTGTTTATGC
1 ATTTTATTTGTTTATGC
*
72678017 ATTTT-TTTG-TTATTC
1 ATTTTATTTGTTTATGC
72678032 ATTTT
1 ATTTT
72678037 CAATAGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 10 0.53
16 4 0.21
17 5 0.26
ACGTcount: A:0.16, C:0.05, G:0.08, T:0.70
Consensus pattern (17 bp):
ATTTTATTTGTTTATGC
Found at i:72683930 original size:17 final size:18
Alignment explanation
Indices: 72683910--72683945 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
72683900 TAATCTTGTT
72683910 TTAATAAATTAATA-GCA
1 TTAATAAATTAATATGCA
*
72683927 TTAATAATTTAATATGCA
1 TTAATAAATTAATATGCA
72683945 T
1 T
72683946 ATATTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAATAAATTAATATGCA
Found at i:72687795 original size:50 final size:48
Alignment explanation
Indices: 72687728--72687851 Score: 142
Period size: 48 Copynumber: 2.5 Consensus size: 48
72687718 CAACGCCATG
* * *
72687728 TCCCAGACATGGTCTTACACTGGC-TCTCACATCTCTGTGTCGATGTCATA
1 TCCCAGACATGGTCTTACACTGACACCT-ACAT-AC-GTGTCGATGTCATA
** * *
72687778 TCCCAGACATGGTCTTACACTGACACCTTTATACGTGTCGATGTTATG
1 TCCCAGACATGGTCTTACACTGACACCTACATACGTGTCGATGTCATA
*
72687826 TCCCAGACATGGTCTTACACTAACAC
1 TCCCAGACATGGTCTTACACTGACAC
72687852 ATCTCGTAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
48 37 0.57
49 1 0.02
50 25 0.38
51 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (48 bp):
TCCCAGACATGGTCTTACACTGACACCTACATACGTGTCGATGTCATA
Found at i:72694625 original size:49 final size:49
Alignment explanation
Indices: 72694568--72694813 Score: 276
Period size: 49 Copynumber: 5.0 Consensus size: 49
72694558 GTAGCTGAAG
** * *
72694568 CTATCTGGTATGCATAGTAGCCTGGACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
72694617 TTATCTGGTACACCTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * * * *
72694667 CCATTTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * * *
72694717 GTTATCAGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAA
1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
72694767 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
72694814 TCACAATAGC
Statistics
Matches: 162, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 79 0.49
50 47 0.29
51 36 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:72694809 original size:100 final size:99
Alignment explanation
Indices: 72694582--72694813 Score: 322
Period size: 100 Copynumber: 2.3 Consensus size: 99
72694572 CTGGTATGCA
* * * * *
72694582 TAGTAGCCTGGACTTAGTACTACACATGCGACCAATTATCTGGTACACCTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* * * *
72694647 GTACTACACACGTGACCTAACCATTTGATACACG
66 ATACTACACACGCGACCTAACAATCTGATACACG
* *
72694681 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* *
72694746 TAATACTACACATGCGACC-AACAATCTGGTACACG
64 TAATACTACACACGCGACCTAACAATCTGATACACG
72694781 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
72694814 TCACAATAGC
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 29 0.25
100 47 0.40
101 41 0.35
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
ATACTACACACGCGACCTAACAATCTGATACACG
Found at i:72695186 original size:35 final size:35
Alignment explanation
Indices: 72695135--72695201 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
72695125 ATATTTCATA
*
72695135 ATAACAATCTTCATATCATATAAATAACATTAATG
1 ATAACAATCATCATATCATATAAATAACATTAATG
*
72695170 ATAATAATCATCATATCATATAAATAACATTA
1 ATAACAATCATCATATCATATAAATAACATTA
72695202 TATTACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.34
Consensus pattern (35 bp):
ATAACAATCATCATATCATATAAATAACATTAATG
Found at i:72695204 original size:19 final size:19
Alignment explanation
Indices: 72695147--72695204 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
72695137 AACAATCTTC
72695147 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
72695166 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
72695182 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
72695201 ATAT
1 ATAT
72695205 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:72695428 original size:30 final size:30
Alignment explanation
Indices: 72695394--72695453 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
72695384 CTTTAATACG
72695394 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
72695424 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
72695454 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:72707155 original size:17 final size:17
Alignment explanation
Indices: 72707114--72707166 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
72707104 TGTTCCACAT
72707114 AAAAAAA-ATAAAAGAA
1 AAAAAAAGATAAAAGAA
72707130 AGAAAAAAGA-AAAAGAA
1 A-AAAAAAGATAAAAGAA
*
72707147 GAAAAAAAGTTAAAA-AA
1 -AAAAAAAGATAAAAGAA
72707164 AAA
1 AAA
72707167 GTTTGATGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
16 4 0.12
17 22 0.69
18 6 0.19
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (17 bp):
AAAAAAAGATAAAAGAA
Found at i:72710011 original size:37 final size:37
Alignment explanation
Indices: 72709960--72710156 Score: 191
Period size: 37 Copynumber: 5.3 Consensus size: 37
72709950 ATACTCCCTA
* * * *
72709960 ATTTGGCGTTTTATCAGGTAGATTATCTTTTATGAAC
1 ATTTGGCGTGTTATCAGGTGGATTAGCTCTTATGAAC
* * *
72709997 ATTTGGCTTGTTATCGGGTGGATTAGCTCTTATAGGA-
1 ATTTGGCGTGTTATCAGGTGGATTAGCTCTTAT-GAAC
* * * *
72710034 ATTTGGCGTGTTATCTGATGGATTAGCTCCTATGAGC
1 ATTTGGCGTGTTATCAGGTGGATTAGCTCTTATGAAC
* *
72710071 ATTTGGCGTGTCATCAGGTGGATTAGCTCTTATGAGC
1 ATTTGGCGTGTTATCAGGTGGATTAGCTCTTATGAAC
* * * *
72710108 ATTTGGCGTGTCATCAAGG-GAAGTAGCTCTTATGAGC
1 ATTTGGCGTGTTATC-AGGTGGATTAGCTCTTATGAAC
* *
72710145 AATTAGCGTGTT
1 ATTTGGCGTGTT
72710157 TTGGTTGGAT
Statistics
Matches: 135, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
36 1 0.01
37 129 0.96
38 5 0.04
ACGTcount: A:0.21, C:0.14, G:0.27, T:0.38
Consensus pattern (37 bp):
ATTTGGCGTGTTATCAGGTGGATTAGCTCTTATGAAC
Found at i:72711379 original size:15 final size:15
Alignment explanation
Indices: 72711358--72711392 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
72711348 ACTCTTTAAG
72711358 CTTTAGTTTAATTTA
1 CTTTAGTTTAATTTA
* *
72711373 TTTTAGTTTATTTTA
1 CTTTAGTTTAATTTA
72711388 CTTTA
1 CTTTA
72711393 AAATTGTCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.66
Consensus pattern (15 bp):
CTTTAGTTTAATTTA
Found at i:72714298 original size:20 final size:20
Alignment explanation
Indices: 72714273--72714313 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
72714263 ATACTAAGGT
72714273 CATTTAAGAGTATAATTAAA
1 CATTTAAGAGTATAATTAAA
72714293 CATTTAAGAGTATAATTAAA
1 CATTTAAGAGTATAATTAAA
72714313 C
1 C
72714314 CATGTTAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (20 bp):
CATTTAAGAGTATAATTAAA
Found at i:72720494 original size:18 final size:18
Alignment explanation
Indices: 72720459--72720492 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72720449 TTTGTTTTAT
72720459 ATTTTACTTCTTTCTTTG
1 ATTTTACTTCTTTCTTTG
*
72720477 ATTTTTCTT-TTTCTTT
1 ATTTTACTTCTTTCTTT
72720493 TGCATGCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.09, C:0.15, G:0.03, T:0.74
Consensus pattern (18 bp):
ATTTTACTTCTTTCTTTG
Found at i:72723881 original size:25 final size:25
Alignment explanation
Indices: 72723852--72723906 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
72723842 CACCACGACA
* *
72723852 GCTTTCCAAATGATACGCTATAAAG
1 GCTTTCCAAATGATACGCCACAAAG
72723877 GCTTTCCAAATGATACGCCACAAAG
1 GCTTTCCAAATGATACGCCACAAAG
72723902 GCTTT
1 GCTTT
72723907 TCAGGTAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (25 bp):
GCTTTCCAAATGATACGCCACAAAG
Done.